Cow genome map


           Conread name:
           rspl34_m15.y1
        

               Conread position:
               1-159
               

               Cow position:
               chr1:91811790-91811949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               66, 12
               

               Conread position:
               1-186
               

               Cow position:
               chr1:6381780-6381970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               12, 74
               

               Conread position:
               1-192
               

               Cow position:
               chr1:82337768-82337580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               66, 13
               

               Conread position:
               1-192
               

               Cow position:
               chr1:100474242-100474439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               1-198
               

               Cow position:
               chr1:49433256-49433055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               1-199
               

               Cow position:
               chr1:2075342-2075143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               19, 99
               

               Conread position:
               1-199
               

               Cow position:
               chr1:24777981-24777777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               63, 13
               

               Conread position:
               1-199
               

               Cow position:
               chr1:49980718-49980915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               12, 51
               

               Conread position:
               1-201
               

               Cow position:
               chr1:242565-242761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               12, 117
               

               Conread position:
               1-201
               

               Cow position:
               chr1:731968-731761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               13, 175
               

               Conread position:
               1-201
               

               Cow position:
               chr1:98380289-98380087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               13, 20
               

               Conread position:
               1-201
               

               Cow position:
               chr1:102266260-102266062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               19, 13
               

               Conread position:
               1-202
               

               Cow position:
               chr1:6731188-6731387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               12, 125
               

               Conread position:
               1-203
               

               Cow position:
               chr1:30035232-30035435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               13, 78
               

               Conread position:
               1-204
               

               Cow position:
               chr1:40303555-40303758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               25, 134
               

               Conread position:
               1-207
               

               Cow position:
               chr1:874658-874879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               1-208
               

               Cow position:
               chr1:71664884-71664680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               64, 16
               

               Conread position:
               1-214
               

               Cow position:
               chr1:1802177-1802392 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               1-214
               

               Cow position:
               chr1:3685607-3685811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               154
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               1-215
               

               Cow position:
               chr1:74084180-74083968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               35, 12
               

               Conread position:
               1-217
               

               Cow position:
               chr1:34001051-34001265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               25, 112
               

               Conread position:
               1-218
               

               Cow position:
               chr1:22192777-22192995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               14, 122
               

               Conread position:
               1-218
               

               Cow position:
               chr1:98557113-98556893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               15, 119
               

               Conread position:
               1-219
               

               Cow position:
               chr1:1347629-1347407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               14, 145
               

               Conread position:
               1-219
               

               Cow position:
               chr1:36998193-36998410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               12, 113
               

               Conread position:
               1-219
               

               Cow position:
               chr1:77425110-77425336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               12, 175
               

               Conread position:
               1-220
               

               Cow position:
               chr1:72034916-72034700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               12, 105
               

               Conread position:
               1-221
               

               Cow position:
               chr1:96081488-96081703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               153
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               12, 112
               

               Conread position:
               1-223
               

               Cow position:
               chr1:64804094-64803867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               12, 201
               

               Conread position:
               1-223
               

               Cow position:
               chr1:67529063-67529289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               12, 48
               

               Conread position:
               1-225
               

               Cow position:
               chr1:83972772-83973000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               12, 164
               

               Conread position:
               1-233
               

               Cow position:
               chr1:72068827-72068593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               12, 184
               

               Conread position:
               2-204
               

               Cow position:
               chr1:87095209-87095001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               156
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               24, 190
               

               Conread position:
               2-221
               

               Cow position:
               chr1:55428944-55428725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 23
               

               Conread position:
               2-222
               

               Cow position:
               chr1:1489397-1489174 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               37, 23
               

               Conread position:
               3-185
               

               Cow position:
               chr1:34856622-34856432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               3-185
               

               Cow position:
               chr1:96518699-96518895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               18, 39
               

               Conread position:
               3-199
               

               Cow position:
               chr1:86057066-86056871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 52
               

               Conread position:
               3-199
               

               Cow position:
               chr1:95558043-95558246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               22, 184
               

               Conread position:
               3-200
               

               Cow position:
               chr1:17056000-17056198 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               26, 92
               

               Conread position:
               3-201
               

               Cow position:
               chr1:19515613-19515407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               151
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               17, 156
               

               Conread position:
               3-204
               

               Cow position:
               chr1:1878026-1878234 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               22, 201
               

               Conread position:
               3-204
               

               Cow position:
               chr1:71790142-71789937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               22, 68
               

               Conread position:
               3-204
               

               Cow position:
               chr1:102468611-102468410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               148
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               22, 157
               

               Conread position:
               3-206
               

               Cow position:
               chr1:86340458-86340243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               23, 50
               

               Conread position:
               3-207
               

               Cow position:
               chr1:10942088-10941882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               22, 128
               

               Conread position:
               3-207
               

               Cow position:
               chr1:10964298-10964504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               22, 128
               

               Conread position:
               3-207
               

               Cow position:
               chr1:31819117-31819319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               19, 98
               

               Conread position:
               3-212
               

               Cow position:
               chr1:57089673-57089459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               23, 84
               

               Conread position:
               3-213
               

               Cow position:
               chr1:87888395-87888609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               36, 22
               

               Conread position:
               3-214
               

               Cow position:
               chr1:99322556-99322349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               22, 75
               

               Conread position:
               3-215
               

               Cow position:
               chr1:50765618-50765835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 200
               

               Conread position:
               3-215
               

               Cow position:
               chr1:70422310-70422523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               20, 168
               

               Conread position:
               3-217
               

               Cow position:
               chr1:29474341-29474128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               24, 50
               

               Conread position:
               3-218
               

               Cow position:
               chr1:41289771-41289556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               20, 125
               

               Conread position:
               3-219
               

               Cow position:
               chr1:46030966-46031186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               21, 103
               

               Conread position:
               3-219
               

               Cow position:
               chr1:77647964-77647744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               23, 58
               

               Conread position:
               3-220
               

               Cow position:
               chr1:7442982-7443211 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               3-220
               

               Cow position:
               chr1:97231966-97232197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               22, 178
               

               Conread position:
               3-221
               

               Cow position:
               chr1:63994549-63994330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               176
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               20, 109
               

               Conread position:
               3-222
               

               Cow position:
               chr1:31794999-31794781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               19, 57
               

               Conread position:
               3-223
               

               Cow position:
               chr1:38706848-38706624 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               23, 114
               

               Conread position:
               3-223
               

               Cow position:
               chr1:63992330-63992105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               23, 69
               

               Conread position:
               3-223
               

               Cow position:
               chr1:86061979-86061748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               62, 22
               

               Conread position:
               3-224
               

               Cow position:
               chr1:81390928-81391153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               20, 78
               

               Conread position:
               3-231
               

               Cow position:
               chr1:96964324-96964558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               3-233
               

               Cow position:
               chr1:71770303-71770067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               23, 192
               

               Conread position:
               3-236
               

               Cow position:
               chr1:17875701-17875469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               20, 124
               

               Conread position:
               4-147
               

               Cow position:
               chr1:32001306-32001167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               61, 21
               

               Conread position:
               4-185
               

               Cow position:
               chr1:11729188-11729365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               16, 8
               

               Conread position:
               4-185
               

               Cow position:
               chr1:88391110-88391294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               22, 105
               

               Conread position:
               4-186
               

               Cow position:
               chr1:95618649-95618835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               21, 113
               

               Conread position:
               4-192
               

               Cow position:
               chr1:22035618-22035808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               22, 126
               

               Conread position:
               4-192
               

               Cow position:
               chr1:65638921-65639123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               21, 98
               

               Conread position:
               4-192
               

               Cow position:
               chr1:73721373-73721564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               4-199
               

               Cow position:
               chr1:8287623-8287424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               22, 89
               

               Conread position:
               4-199
               

               Cow position:
               chr1:73551497-73551295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               4-199
               

               Cow position:
               chr1:101280727-101280531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               22, 114
               

               Conread position:
               4-199
               

               Cow position:
               chr1:102648285-102648486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               21, 138
               

               Conread position:
               4-201
               

               Cow position:
               chr1:96558836-96558637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               4-204
               

               Cow position:
               chr1:42868929-42868739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               20, 105
               

               Conread position:
               4-204
               

               Cow position:
               chr1:84594895-84595101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               17, 197
               

               Conread position:
               4-205
               

               Cow position:
               chr1:3323875-3324085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               22, 95
               

               Conread position:
               4-205
               

               Cow position:
               chr1:6166254-6166445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               61, 20
               

               Conread position:
               4-214
               

               Cow position:
               chr1:100823051-100823260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               61, 21
               

               Conread position:
               4-215
               

               Cow position:
               chr1:48444183-48443968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               4-216
               

               Cow position:
               chr1:73020649-73020438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               62, 99
               

               Conread position:
               4-217
               

               Cow position:
               chr1:52435285-52435501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               17, 12
               

               Conread position:
               4-218
               

               Cow position:
               chr1:6394568-6394781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               8, 114
               

               Conread position:
               4-218
               

               Cow position:
               chr1:49334379-49334167 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               59, 12
               

               Conread position:
               4-218
               

               Cow position:
               chr1:71665925-71665710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               22, 82
               

               Conread position:
               4-218
               

               Cow position:
               chr1:72841348-72841567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               17, 7
               

               Conread position:
               4-218
               

               Cow position:
               chr1:77739729-77739949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               17, 97
               

               Conread position:
               4-218
               

               Cow position:
               chr1:102768188-102768400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               17, 114
               

               Conread position:
               4-219
               

               Cow position:
               chr1:18936827-18936611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               22, 98
               

               Conread position:
               4-219
               

               Cow position:
               chr1:81228321-81228107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               16, 7
               

               Conread position:
               4-220
               

               Cow position:
               chr1:89437707-89437500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               23, 63
               

               Conread position:
               4-221
               

               Cow position:
               chr1:22823912-22824138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               177
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               4-221
               

               Cow position:
               chr1:84104048-84103829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               4-222
               

               Cow position:
               chr1:6590046-6590267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               16, 7
               

               Conread position:
               4-222
               

               Cow position:
               chr1:75250122-75250337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               16, 153
               

               Conread position:
               4-223
               

               Cow position:
               chr1:16060997-16060781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               22, 108
               

               Conread position:
               4-223
               

               Cow position:
               chr1:38419036-38419260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               62, 163
               

               Conread position:
               4-226
               

               Cow position:
               chr1:95835785-95835561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 22
               

               Conread position:
               4-231
               

               Cow position:
               chr1:97144457-97144229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               21, 115
               

               Conread position:
               4-233
               

               Cow position:
               chr1:59518929-59519151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               63, 21
               

               Conread position:
               4-237
               

               Cow position:
               chr1:69411685-69411454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               177
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               16, 153
               

               Conread position:
               5-200
               

               Cow position:
               chr1:87149807-87149608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               21, 117
               

               Conread position:
               5-204
               

               Cow position:
               chr1:60603569-60603360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               21, 200
               

               Conread position:
               5-214
               

               Cow position:
               chr1:86840910-86841121 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               15, 143
               

               Conread position:
               5-216
               

               Cow position:
               chr1:5751321-5751539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               19, 139
               

               Conread position:
               5-218
               

               Cow position:
               chr1:43855309-43855515 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               31, 19
               

               Conread position:
               5-218
               

               Cow position:
               chr1:79631521-79631308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               60, 34
               

               Conread position:
               5-232
               

               Cow position:
               chr1:83222003-83222229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               60, 20
               

               Conread position:
               6-192
               

               Cow position:
               chr1:51860552-51860364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               20, 126
               

               Conread position:
               6-192
               

               Cow position:
               chr1:68710290-68710484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               25, 13
               

               Conread position:
               6-194
               

               Cow position:
               chr1:100421838-100422022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               137
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               7, 61
               

               Conread position:
               6-198
               

               Cow position:
               chr1:88359891-88360091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               6-204
               

               Cow position:
               chr1:6790782-6790985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               15, 196
               

               Conread position:
               6-207
               

               Cow position:
               chr1:98467811-98468017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               6-214
               

               Cow position:
               chr1:81515246-81515459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               7, 194
               

               Conread position:
               6-218
               

               Cow position:
               chr1:101267994-101267775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               19, 32
               

               Conread position:
               6-220
               

               Cow position:
               chr1:81858888-81858676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               158
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               7, 109
               

               Conread position:
               6-222
               

               Cow position:
               chr1:46004293-46004503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               15, 118
               

               Conread position:
               6-225
               

               Cow position:
               chr1:78794218-78794003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               7, 112
               

               Conread position:
               6-230
               

               Cow position:
               chr1:5284216-5283988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               59, 13
               

               Conread position:
               7-201
               

               Cow position:
               chr1:95049852-95049656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               8, 160
               

               Conread position:
               7-202
               

               Cow position:
               chr1:94823380-94823181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               8, 192
               

               Conread position:
               8-186
               

               Cow position:
               chr1:30983479-30983298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               59, 11
               

               Conread position:
               8-194
               

               Cow position:
               chr1:60045001-60045189 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               8, 26
               

               Conread position:
               8-195
               

               Cow position:
               chr1:16767071-16766883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               57, 109
               

               Conread position:
               8-201
               

               Cow position:
               chr1:79718821-79719015 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               17, 81
               

               Conread position:
               8-206
               

               Cow position:
               chr1:3815668-3815469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               11, 32
               

               Conread position:
               8-207
               

               Cow position:
               chr1:87072712-87072909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               13, 45
               

               Conread position:
               8-207
               

               Cow position:
               chr1:90820458-90820267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               56, 5
               

               Conread position:
               8-220
               

               Cow position:
               chr1:53370098-53370311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               7, 159
               

               Conread position:
               8-220
               

               Cow position:
               chr1:92524027-92524244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               7, 188
               

               Conread position:
               8-225
               

               Cow position:
               chr1:101834832-101835047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               56, 160
               

               Conread position:
               8-226
               

               Cow position:
               chr1:88913333-88913551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               18, 46
               

               Conread position:
               9-178
               

               Cow position:
               chr1:1053593-1053768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               9-222
               

               Cow position:
               chr1:36018765-36018555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               54, 140
               

               Conread position:
               10-204
               

               Cow position:
               chr1:15333908-15334100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               12, 104
               

               Conread position:
               10-204
               

               Cow position:
               chr1:85622542-85622744 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               149
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               10-220
               

               Cow position:
               chr1:12090363-12090570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               43, 19
               

               Conread position:
               10-220
               

               Cow position:
               chr1:30862396-30862184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               55, 19
               

               Conread position:
               10-223
               

               Cow position:
               chr1:48447486-48447698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               150
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               61, 15
               

               Conread position:
               10-230
               

               Cow position:
               chr1:68961341-68961566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               41, 16
               

               Conread position:
               10-239
               

               Cow position:
               chr1:31340758-31340525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               13, 186
               

               Conread position:
               11-204
               

               Cow position:
               chr1:62997813-62998014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               11-212
               

               Cow position:
               chr1:7965867-7966067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               56, 14
               

               Conread position:
               11-216
               

               Cow position:
               chr1:24133046-24132837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               15, 108
               

               Conread position:
               12-214
               

               Cow position:
               chr1:72105425-72105622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               15, 113
               

               Conread position:
               12-219
               

               Cow position:
               chr1:50432469-50432252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               13-233
               

               Cow position:
               chr1:69250457-69250674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               52, 13
               

               Conread position:
               14-199
               

               Cow position:
               chr1:34731067-34731256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               14-225
               

               Cow position:
               chr1:43352634-43352416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               15-214
               

               Cow position:
               chr1:83246448-83246646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               19, 10
               

               Conread position:
               16-185
               

               Cow position:
               chr1:69691689-69691519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               49, 9
               

               Conread position:
               16-192
               

               Cow position:
               chr1:78030006-78029826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               47, 9
               

               Conread position:
               16-201
               

               Cow position:
               chr1:102797972-102797792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               49, 9
               

               Conread position:
               16-203
               

               Cow position:
               chr1:4573749-4573937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               49, 9
               

               Conread position:
               16-214
               

               Cow position:
               chr1:63212232-63212037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               108, 6
               

               Conread position:
               16-218
               

               Cow position:
               chr1:94713140-94712937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               49, 88
               

               Conread position:
               16-219
               

               Cow position:
               chr1:79684410-79684208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               49, 9
               

               Conread position:
               16-223
               

               Cow position:
               chr1:74751605-74751397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               49, 9
               

               Conread position:
               18-216
               

               Cow position:
               chr1:45099786-45099977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               8, 89
               

               Conread position:
               18-223
               

               Cow position:
               chr1:41022446-41022645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               47, 108
               

               Conread position:
               19-183
               

               Cow position:
               chr1:101525897-101525729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               46, 77
               

               Conread position:
               19-185
               

               Cow position:
               chr1:6941496-6941659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               48, 97
               

               Conread position:
               19-185
               

               Cow position:
               chr1:6958909-6959072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               48, 97
               

               Conread position:
               19-185
               

               Cow position:
               chr1:33409597-33409430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               47, 80
               

               Conread position:
               19-185
               

               Cow position:
               chr1:72813644-72813810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               46, 132
               

               Conread position:
               19-185
               

               Cow position:
               chr1:78793975-78793810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               46, 94
               

               Conread position:
               19-197
               

               Cow position:
               chr1:19599333-19599155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               47, 81
               

               Conread position:
               19-199
               

               Cow position:
               chr1:62519391-62519573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               19-201
               

               Cow position:
               chr1:90267748-90267932 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               46, 180
               

               Conread position:
               19-203
               

               Cow position:
               chr1:11489130-11488948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               46, 17
               

               Conread position:
               19-204
               

               Cow position:
               chr1:12222579-12222391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               19-204
               

               Cow position:
               chr1:15875688-15875871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               46, 87
               

               Conread position:
               19-208
               

               Cow position:
               chr1:74919951-74919760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               44, 180
               

               Conread position:
               19-212
               

               Cow position:
               chr1:21955345-21955154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               44, 79
               

               Conread position:
               19-212
               

               Cow position:
               chr1:76740649-76740454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               45, 181
               

               Conread position:
               19-213
               

               Cow position:
               chr1:49825036-49824846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               48, 105
               

               Conread position:
               19-214
               

               Cow position:
               chr1:102730734-102730535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               19-216
               

               Cow position:
               chr1:500203-500400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               47, 115
               

               Conread position:
               19-216
               

               Cow position:
               chr1:21508421-21508621 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               19-217
               

               Cow position:
               chr1:4444814-4444614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               19-218
               

               Cow position:
               chr1:53402809-53403009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               158
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               47, 189
               

               Conread position:
               19-219
               

               Cow position:
               chr1:51394446-51394643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               48, 81
               

               Conread position:
               19-219
               

               Cow position:
               chr1:52674148-52673948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               47, 152
               

               Conread position:
               19-219
               

               Cow position:
               chr1:83677296-83677100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               46, 75
               

               Conread position:
               19-220
               

               Cow position:
               chr1:36921046-36921250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               19-221
               

               Cow position:
               chr1:55753188-55752987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               45, 97
               

               Conread position:
               19-221
               

               Cow position:
               chr1:64457993-64458199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               44, 188
               

               Conread position:
               19-223
               

               Cow position:
               chr1:99637226-99637020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               19-224
               

               Cow position:
               chr1:37695874-37695673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               46, 95
               

               Conread position:
               19-228
               

               Cow position:
               chr1:66898470-66898259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               48, 170
               

               Conread position:
               20-213
               

               Cow position:
               chr1:86113370-86113175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               47, 5
               

               Conread position:
               22-218
               

               Cow position:
               chr1:61005530-61005335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               45, 14
               

               Conread position:
               24-178
               

               Cow position:
               chr1:6031657-6031814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               24-192
               

               Cow position:
               chr1:759385-759212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               24-201
               

               Cow position:
               chr1:86503331-86503153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               139
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               41, 129
               

               Conread position:
               24-204
               

               Cow position:
               chr1:7245924-7245742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               24-208
               

               Cow position:
               chr1:852203-852389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               24-217
               

               Cow position:
               chr1:22448222-22448017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               24-225
               

               Cow position:
               chr1:46795791-46795991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               183, 113
               

               Conread position:
               25-147
               

               Cow position:
               chr1:67539594-67539717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               40, 11
               

               Conread position:
               25-169
               

               Cow position:
               chr1:70146877-70146731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               109
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               25-183
               

               Cow position:
               chr1:23372893-23373052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               41, 86
               

               Conread position:
               25-185
               

               Cow position:
               chr1:2971951-2972113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               25-185
               

               Cow position:
               chr1:61134446-61134608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               25-192
               

               Cow position:
               chr1:21093151-21093319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               38, 70
               

               Conread position:
               25-192
               

               Cow position:
               chr1:38753957-38754117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               41, 81
               

               Conread position:
               25-192
               

               Cow position:
               chr1:55327019-55326850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               25-192
               

               Cow position:
               chr1:84815164-84815334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               37, 166
               

               Conread position:
               25-198
               

               Cow position:
               chr1:33206847-33206668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               25-199
               

               Cow position:
               chr1:20950748-20950924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               40, 64
               

               Conread position:
               25-199
               

               Cow position:
               chr1:63460912-63461085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               40, 80
               

               Conread position:
               25-199
               

               Cow position:
               chr1:63530592-63530766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               42, 71
               

               Conread position:
               25-200
               

               Cow position:
               chr1:65318609-65318785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               40, 67
               

               Conread position:
               25-200
               

               Cow position:
               chr1:77986385-77986208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               122
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               25-201
               

               Cow position:
               chr1:4618709-4618534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               24, 29
               

               Conread position:
               25-201
               

               Cow position:
               chr1:22828536-22828364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               40, 101
               

               Conread position:
               25-201
               

               Cow position:
               chr1:52139594-52139419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               40, 97
               

               Conread position:
               25-201
               

               Cow position:
               chr1:53374467-53374636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               25-201
               

               Cow position:
               chr1:73458065-73457887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               127
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               38, 172
               

               Conread position:
               25-204
               

               Cow position:
               chr1:47658379-47658560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               25-204
               

               Cow position:
               chr1:51435813-51435991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               41, 143
               

               Conread position:
               25-204
               

               Cow position:
               chr1:53442078-53441903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               88, 40
               

               Conread position:
               25-204
               

               Cow position:
               chr1:54569732-54569913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               25-204
               

               Cow position:
               chr1:64421575-64421748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               40, 104
               

               Conread position:
               25-204
               

               Cow position:
               chr1:91066117-91065946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               39, 25
               

               Conread position:
               25-205
               

               Cow position:
               chr1:100800735-100800556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               19, 87
               

               Conread position:
               25-207
               

               Cow position:
               chr1:38277994-38277810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               38, 74
               

               Conread position:
               25-208
               

               Cow position:
               chr1:5872745-5872559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               42, 169
               

               Conread position:
               25-208
               

               Cow position:
               chr1:20125826-20126011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               23, 27
               

               Conread position:
               25-208
               

               Cow position:
               chr1:70227660-70227477 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               131
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               40, 164
               

               Conread position:
               25-208
               

               Cow position:
               chr1:97986415-97986228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               25-212
               

               Cow position:
               chr1:81568994-81568811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               40, 67
               

               Conread position:
               25-213
               

               Cow position:
               chr1:32014230-32014414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               38, 91
               

               Conread position:
               25-214
               

               Cow position:
               chr1:14567603-14567419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               180, 40
               

               Conread position:
               25-214
               

               Cow position:
               chr1:92996857-92996664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               42, 74
               

               Conread position:
               25-215
               

               Cow position:
               chr1:7229652-7229463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               45, 80
               

               Conread position:
               25-215
               

               Cow position:
               chr1:47966989-47966796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               25-215
               

               Cow position:
               chr1:96019262-96019451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               41, 143
               

               Conread position:
               25-217
               

               Cow position:
               chr1:60403800-60403991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               40, 164
               

               Conread position:
               25-217
               

               Cow position:
               chr1:77685947-77685752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               25-218
               

               Cow position:
               chr1:47790628-47790442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               25-218
               

               Cow position:
               chr1:49297685-49297876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               40, 79
               

               Conread position:
               25-218
               

               Cow position:
               chr1:102423827-102424022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               40, 138
               

               Conread position:
               25-219
               

               Cow position:
               chr1:43296685-43296487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               148
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               41, 167
               

               Conread position:
               25-219
               

               Cow position:
               chr1:43311738-43311537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               25-219
               

               Cow position:
               chr1:47468047-47467853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               40, 167
               

               Conread position:
               25-219
               

               Cow position:
               chr1:75247800-75247996 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               41, 74
               

               Conread position:
               25-220
               

               Cow position:
               chr1:23186764-23186571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               41, 25
               

               Conread position:
               25-220
               

               Cow position:
               chr1:55230010-55230200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               38, 101
               

               Conread position:
               25-220
               

               Cow position:
               chr1:72422374-72422178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               153
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               40, 31
               

               Conread position:
               25-221
               

               Cow position:
               chr1:87934237-87934051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               38, 92
               

               Conread position:
               25-223
               

               Cow position:
               chr1:59651688-59651484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               25-223
               

               Cow position:
               chr1:61247398-61247598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               42, 0
               

               Conread position:
               25-223
               

               Cow position:
               chr1:71350693-71350494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               38, 164
               

               Conread position:
               25-223
               

               Cow position:
               chr1:73545877-73545676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               25-223
               

               Cow position:
               chr1:81364294-81364491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               40, 180
               

               Conread position:
               25-223
               

               Cow position:
               chr1:90879702-90879513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               40, 51
               

               Conread position:
               25-223
               

               Cow position:
               chr1:98415621-98415821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               40, 172
               

               Conread position:
               25-224
               

               Cow position:
               chr1:42482236-42482431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               145, 40
               

               Conread position:
               25-224
               

               Cow position:
               chr1:77620580-77620781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               26, 48
               

               Conread position:
               25-224
               

               Cow position:
               chr1:91937751-91937947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               91, 26
               

               Conread position:
               25-225
               

               Cow position:
               chr1:76739876-76739680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               41, 98
               

               Conread position:
               25-226
               

               Cow position:
               chr1:70416726-70416528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               42, 90
               

               Conread position:
               25-227
               

               Cow position:
               chr1:92187991-92188193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               147
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               41, 102
               

               Conread position:
               25-231
               

               Cow position:
               chr1:85688212-85688424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               88, 143
               

               Conread position:
               26-221
               

               Cow position:
               chr1:71946049-71945853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               142
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               40, 139
               

               Conread position:
               28-152
               

               Cow position:
               chr1:37543749-37543622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               128
               

               Alignm identity:
               98
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               28-178
               

               Cow position:
               chr1:31630250-31630097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               116
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               28-186
               

               Cow position:
               chr1:23633893-23633733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               28-191
               

               Cow position:
               chr1:29671187-29671021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               39, 144
               

               Conread position:
               28-192
               

               Cow position:
               chr1:97717535-97717376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               41, 90
               

               Conread position:
               28-197
               

               Cow position:
               chr1:54258604-54258774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               140
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               28-197
               

               Cow position:
               chr1:61846181-61846363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               28-199
               

               Cow position:
               chr1:8652-8825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               28-200
               

               Cow position:
               chr1:25383705-25383877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               39, 84
               

               Conread position:
               28-201
               

               Cow position:
               chr1:21577846-21578019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               38, 76
               

               Conread position:
               28-201
               

               Cow position:
               chr1:53603793-53603968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               121
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-201
               

               Cow position:
               chr1:76613098-76612923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               28-203
               

               Cow position:
               chr1:22461201-22461028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               37, 88
               

               Conread position:
               28-203
               

               Cow position:
               chr1:32217279-32217449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               38, 20
               

               Conread position:
               28-203
               

               Cow position:
               chr1:73534604-73534432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               39, 72
               

               Conread position:
               28-204
               

               Cow position:
               chr1:26895774-26895600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               38, 80
               

               Conread position:
               28-204
               

               Cow position:
               chr1:31231705-31231529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               38, 141
               

               Conread position:
               28-204
               

               Cow position:
               chr1:82336715-82336883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               38, 53
               

               Conread position:
               28-204
               

               Cow position:
               chr1:88397808-88397630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-208
               

               Cow position:
               chr1:52912860-52912677 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               134
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               36, 172
               

               Conread position:
               28-212
               

               Cow position:
               chr1:524845-525024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               133
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               39, 78
               

               Conread position:
               28-212
               

               Cow position:
               chr1:69442481-69442294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               28-213
               

               Cow position:
               chr1:42887240-42887060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               39, 64
               

               Conread position:
               28-213
               

               Cow position:
               chr1:45315599-45315410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               142
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               28-214
               

               Cow position:
               chr1:5821550-5821740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               28-214
               

               Cow position:
               chr1:11772048-11771860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               28-214
               

               Cow position:
               chr1:57880747-57880560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               133
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               38, 162
               

               Conread position:
               28-215
               

               Cow position:
               chr1:90621469-90621285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               20, 89
               

               Conread position:
               28-216
               

               Cow position:
               chr1:3666994-3666809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               143
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               38, 143
               

               Conread position:
               28-216
               

               Cow position:
               chr1:36688341-36688159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               145
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               37, 59
               

               Conread position:
               28-217
               

               Cow position:
               chr1:150888-150696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               38, 84
               

               Conread position:
               28-217
               

               Cow position:
               chr1:10368115-10367923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               28-217
               

               Cow position:
               chr1:22231685-22231876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-217
               

               Cow position:
               chr1:25022038-25021853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               143
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               37, 97
               

               Conread position:
               28-217
               

               Cow position:
               chr1:55297134-55296944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               37, 176
               

               Conread position:
               28-217
               

               Cow position:
               chr1:83659241-83659049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               28-217
               

               Cow position:
               chr1:86486713-86486904 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-217
               

               Cow position:
               chr1:90904719-90904530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               135
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               37, 97
               

               Conread position:
               28-217
               

               Cow position:
               chr1:96304932-96304748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               143
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               38, 98
               

               Conread position:
               28-218
               

               Cow position:
               chr1:1085494-1085687 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               134
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               38, 168
               

               Conread position:
               28-218
               

               Cow position:
               chr1:9637066-9637256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               28-218
               

               Cow position:
               chr1:20871522-20871334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               37, 170
               

               Conread position:
               28-218
               

               Cow position:
               chr1:51609413-51609604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               37, 137
               

               Conread position:
               28-218
               

               Cow position:
               chr1:84906026-84905834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-218
               

               Cow position:
               chr1:91023430-91023244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               39, 97
               

               Conread position:
               28-219
               

               Cow position:
               chr1:21681500-21681310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               37, 170
               

               Conread position:
               28-219
               

               Cow position:
               chr1:69346942-69346749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               28-220
               

               Cow position:
               chr1:3244248-3244440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               37, 170
               

               Conread position:
               28-220
               

               Cow position:
               chr1:10616926-10617119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               142
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               37, 22
               

               Conread position:
               28-220
               

               Cow position:
               chr1:10952919-10953112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               38, 76
               

               Conread position:
               28-220
               

               Cow position:
               chr1:21561049-21561248 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               28-220
               

               Cow position:
               chr1:36079861-36080056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-220
               

               Cow position:
               chr1:78092074-78092272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               144
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               28-220
               

               Cow position:
               chr1:89146837-89146645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               37, 11
               

               Conread position:
               28-220
               

               Cow position:
               chr1:93499658-93499844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               39, 67
               

               Conread position:
               28-221
               

               Cow position:
               chr1:56719377-56719566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               37, 63
               

               Conread position:
               28-222
               

               Cow position:
               chr1:28058930-28058733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               135
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               38, 71
               

               Conread position:
               28-222
               

               Cow position:
               chr1:31765337-31765139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               28-222
               

               Cow position:
               chr1:70483297-70483105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               143
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               40, 98
               

               Conread position:
               28-222
               

               Cow position:
               chr1:78857292-78857099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               39, 167
               

               Conread position:
               28-223
               

               Cow position:
               chr1:63596017-63595819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-223
               

               Cow position:
               chr1:69905843-69905646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 137
               

               Conread position:
               28-223
               

               Cow position:
               chr1:87083666-87083859 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               38, 137
               

               Conread position:
               28-224
               

               Cow position:
               chr1:1495152-1495353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               35, 128
               

               Conread position:
               28-224
               

               Cow position:
               chr1:4582588-4582785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               38, 11
               

               Conread position:
               28-224
               

               Cow position:
               chr1:24792824-24793022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               28-224
               

               Cow position:
               chr1:42175764-42175960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               39, 58
               

               Conread position:
               28-224
               

               Cow position:
               chr1:67919172-67919362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               38, 76
               

               Conread position:
               28-224
               

               Cow position:
               chr1:68897234-68897034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-224
               

               Cow position:
               chr1:81471392-81471582 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               146
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               35, 92
               

               Conread position:
               28-226
               

               Cow position:
               chr1:8172289-8172087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-227
               

               Cow position:
               chr1:69378562-69378364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               39, 67
               

               Conread position:
               28-227
               

               Cow position:
               chr1:76518459-76518656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               38, 165
               

               Conread position:
               28-230
               

               Cow position:
               chr1:15206835-15206644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               35, 48
               

               Conread position:
               28-231
               

               Cow position:
               chr1:65323607-65323404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               38, 175
               

               Conread position:
               28-233
               

               Cow position:
               chr1:3757611-3757401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-233
               

               Cow position:
               chr1:5776180-5776389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               28-233
               

               Cow position:
               chr1:33720138-33720344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               37, 201
               

               Conread position:
               28-233
               

               Cow position:
               chr1:75411802-75411595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               29-183
               

               Cow position:
               chr1:17196589-17196434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               39, 86
               

               Conread position:
               29-184
               

               Cow position:
               chr1:25955933-25956088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               35, 85
               

               Conread position:
               29-185
               

               Cow position:
               chr1:40181587-40181428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               29-207
               

               Cow position:
               chr1:31846035-31846212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               167, 0
               

               Conread position:
               29-212
               

               Cow position:
               chr1:4294382-4294565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               36, 73
               

               Conread position:
               29-214
               

               Cow position:
               chr1:52496809-52496992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               141
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               38, 21
               

               Conread position:
               29-215
               

               Cow position:
               chr1:39684106-39683922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               96, 166
               

               Conread position:
               29-218
               

               Cow position:
               chr1:1380035-1380227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               36, 0
               

               Conread position:
               29-220
               

               Cow position:
               chr1:648363-648560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               37, 189
               

               Conread position:
               29-220
               

               Cow position:
               chr1:20537243-20537430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               36, 94
               

               Conread position:
               29-221
               

               Cow position:
               chr1:42796915-42797110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               37, 95
               

               Conread position:
               29-223
               

               Cow position:
               chr1:709862-709671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               141
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               102, 36
               

               Conread position:
               29-223
               

               Cow position:
               chr1:30028194-30028002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               37, 77
               

               Conread position:
               29-223
               

               Cow position:
               chr1:79178666-79178860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               36, 183
               

               Conread position:
               29-225
               

               Cow position:
               chr1:46245702-46245506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               28, 41
               

               Conread position:
               29-226
               

               Cow position:
               chr1:98619237-98619440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               139
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               30-186
               

               Cow position:
               chr1:47886441-47886286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               129
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               33, 86
               

               Conread position:
               30-219
               

               Cow position:
               chr1:59551476-59551666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               37, 101
               

               Conread position:
               33-214
               

               Cow position:
               chr1:94425656-94425473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               15, 19
               

               Conread position:
               35-181
               

               Cow position:
               chr1:2975950-2975800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               35-201
               

               Cow position:
               chr1:43379318-43379152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               31, 91
               

               Conread position:
               35-204
               

               Cow position:
               chr1:628010-628179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               31, 71
               

               Conread position:
               35-204
               

               Cow position:
               chr1:33846525-33846359 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               28, 64
               

               Conread position:
               35-204
               

               Cow position:
               chr1:36237825-36237991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               35-208
               

               Cow position:
               chr1:26984053-26984227 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               132
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               28, 157
               

               Conread position:
               35-211
               

               Cow position:
               chr1:37726376-37726196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               133
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               30, 160
               

               Conread position:
               35-211
               

               Cow position:
               chr1:95703849-95704025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               126
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               28, 70
               

               Conread position:
               35-213
               

               Cow position:
               chr1:484423-484243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               31, 164
               

               Conread position:
               35-213
               

               Cow position:
               chr1:53394118-53394297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               99, 42
               

               Conread position:
               35-213
               

               Cow position:
               chr1:92792095-92792272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               30, 16
               

               Conread position:
               35-214
               

               Cow position:
               chr1:67674559-67674388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               135
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               30, 71
               

               Conread position:
               36-186
               

               Cow position:
               chr1:78034859-78034711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               115
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               36-191
               

               Cow position:
               chr1:10523745-10523898 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               29, 75
               

               Conread position:
               36-192
               

               Cow position:
               chr1:41027119-41027272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               31, 76
               

               Conread position:
               36-192
               

               Cow position:
               chr1:60987034-60987193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               122
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               36-199
               

               Cow position:
               chr1:26178766-26178601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               116
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               36-199
               

               Cow position:
               chr1:44321553-44321390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               30, 66
               

               Conread position:
               36-199
               

               Cow position:
               chr1:81481337-81481177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               31, 81
               

               Conread position:
               36-204
               

               Cow position:
               chr1:3130504-3130335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               29, 63
               

               Conread position:
               36-204
               

               Cow position:
               chr1:100512940-100513109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               128
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               30, 51
               

               Conread position:
               36-205
               

               Cow position:
               chr1:18764576-18764412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               124
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               30, 51
               

               Conread position:
               36-205
               

               Cow position:
               chr1:23050477-23050648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               30, 40
               

               Conread position:
               36-213
               

               Cow position:
               chr1:46693609-46693427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               133
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               30, 59
               

               Conread position:
               36-214
               

               Cow position:
               chr1:802270-802090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               36-214
               

               Cow position:
               chr1:3435930-3436113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               6, 0
               

               Conread position:
               36-214
               

               Cow position:
               chr1:48301406-48301229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               30, 76
               

               Conread position:
               36-214
               

               Cow position:
               chr1:68688236-68688417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               36-214
               

               Cow position:
               chr1:84782706-84782525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               36-216
               

               Cow position:
               chr1:61884958-61885132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               31, 66
               

               Conread position:
               36-219
               

               Cow position:
               chr1:28563524-28563335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               137
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               30, 60
               

               Conread position:
               36-219
               

               Cow position:
               chr1:101883349-101883163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               36-223
               

               Cow position:
               chr1:2122525-2122336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               36-223
               

               Cow position:
               chr1:46939840-46939644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               141
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               37-213
               

               Cow position:
               chr1:89298065-89297889 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               8, 166
               

               Conread position:
               37-213
               

               Cow position:
               chr1:89301674-89301498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               8, 166
               

               Conread position:
               37-214
               

               Cow position:
               chr1:5597167-5596992 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               5, 89
               

               Conread position:
               37-216
               

               Cow position:
               chr1:4587832-4587650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               28, 165
               

               Conread position:
               37-220
               

               Cow position:
               chr1:54156689-54156505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               143
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               30, 76
               

               Conread position:
               37-225
               

               Cow position:
               chr1:5431108-5431294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               136
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               28, 58
               

               Conread position:
               37-229
               

               Cow position:
               chr1:73584364-73584166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               29, 58
               

               Conread position:
               38-201
               

               Cow position:
               chr1:90192463-90192629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               124
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               38-205
               

               Cow position:
               chr1:99629211-99629376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               149, 60
               

               Conread position:
               38-211
               

               Cow position:
               chr1:65030113-65030291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               39-199
               

               Cow position:
               chr1:99609416-99609574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               25, 78
               

               Conread position:
               39-215
               

               Cow position:
               chr1:82861853-82862031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               128
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               40-206
               

               Cow position:
               chr1:74929662-74929495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               25, 158
               

               Conread position:
               40-211
               

               Cow position:
               chr1:47190946-47190774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               8, 12
               

               Conread position:
               40-212
               

               Cow position:
               chr1:41953953-41953780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               23, 158
               

               Conread position:
               40-218
               

               Cow position:
               chr1:6102854-6102676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               126
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               24, 155
               

               Conread position:
               40-218
               

               Cow position:
               chr1:64887462-64887285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               25, 75
               

               Conread position:
               40-220
               

               Cow position:
               chr1:4180905-4180727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               25, 158
               

               Conread position:
               40-223
               

               Cow position:
               chr1:45579596-45579412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               25, 142
               

               Conread position:
               41-218
               

               Cow position:
               chr1:71228142-71228324 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               41-222
               

               Cow position:
               chr1:42592236-42592056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               132
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               23, 61
               

               Conread position:
               41-225
               

               Cow position:
               chr1:95152921-95153104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               24, 169
               

               Conread position:
               42-198
               

               Cow position:
               chr1:67772130-67771977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               116
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               22, 119
               

               Conread position:
               42-204
               

               Cow position:
               chr1:29329592-29329758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               42-227
               

               Cow position:
               chr1:30469832-30470018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               136
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               21, 156
               

               Conread position:
               43-205
               

               Cow position:
               chr1:7739999-7740156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               21, 73
               

               Conread position:
               43-219
               

               Cow position:
               chr1:53540413-53540592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               23, 133
               

               Conread position:
               43-235
               

               Cow position:
               chr1:71119573-71119765 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               23, 34
               

               Conread position:
               44-198
               

               Cow position:
               chr1:74305029-74304873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               22, 0
               

               Conread position:
               46-185
               

               Cow position:
               chr1:67743681-67743545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               19, 66
               

               Conread position:
               47-200
               

               Cow position:
               chr1:77704885-77704733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               50-185
               

               Cow position:
               chr1:50708209-50708346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               104
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               50-187
               

               Cow position:
               chr1:49082802-49082941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               50-199
               

               Cow position:
               chr1:20202362-20202507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               15, 45
               

               Conread position:
               50-201
               

               Cow position:
               chr1:3535129-3535278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               119
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               15, 45
               

               Conread position:
               50-204
               

               Cow position:
               chr1:50853967-50854126 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               50-206
               

               Cow position:
               chr1:4391212-4391054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               50-207
               

               Cow position:
               chr1:57395448-57395289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               122
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               14, 62
               

               Conread position:
               50-208
               

               Cow position:
               chr1:58420260-58420412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               15, 76
               

               Conread position:
               50-216
               

               Cow position:
               chr1:64811294-64811461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               16, 83
               

               Conread position:
               50-218
               

               Cow position:
               chr1:1915968-1915800 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               13, 40
               

               Conread position:
               50-218
               

               Cow position:
               chr1:80423673-80423508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               17, 75
               

               Conread position:
               50-219
               

               Cow position:
               chr1:3271204-3271378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               130
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               50-219
               

               Cow position:
               chr1:73375043-73374869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               50-220
               

               Cow position:
               chr1:48695490-48695322 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               17, 51
               

               Conread position:
               50-221
               

               Cow position:
               chr1:55260177-55260006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               126
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               16, 80
               

               Conread position:
               50-222
               

               Cow position:
               chr1:49540729-49540558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               13, 152
               

               Conread position:
               50-223
               

               Cow position:
               chr1:12749121-12748946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               16, 139
               

               Conread position:
               50-223
               

               Cow position:
               chr1:91649359-91649184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               50-224
               

               Cow position:
               chr1:66445021-66445193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               15, 71
               

               Conread position:
               50-226
               

               Cow position:
               chr1:73398015-73397837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               141
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               51-199
               

               Cow position:
               chr1:44814610-44814456 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               51-223
               

               Cow position:
               chr1:68696468-68696639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               7, 145
               

               Conread position:
               53-184
               

               Cow position:
               chr1:22394613-22394481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               103
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               12, 60
               

               Conread position:
               53-209
               

               Cow position:
               chr1:1606074-1605914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               14, 0
               

               Conread position:
               53-219
               

               Cow position:
               chr1:79630854-79630695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               14, 59
               

               Conread position:
               53-232
               

               Cow position:
               chr1:91651289-91651108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               12, 140
               

               Conread position:
               54-223
               

               Cow position:
               chr1:57155358-57155190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               11, 26
               

               Conread position:
               55-220
               

               Cow position:
               chr1:34767352-34767520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               8, 143
               

               Conread position:
               55-225
               

               Cow position:
               chr1:34952308-34952471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               7, 31
               

               Conread position:
               56-223
               

               Cow position:
               chr1:63190546-63190714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               55, 107
               

               Conread position:
               57-199
               

               Cow position:
               chr1:100152343-100152493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               118
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               59-221
               

               Cow position:
               chr1:36090149-36089988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               126
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               15, 144
               

               Conread position:
               61-202
               

               Cow position:
               chr1:8133995-8134136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               116
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               133, 36
               

               Conread position:
               62-185
               

               Cow position:
               chr1:66693828-66693708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               62-197
               

               Cow position:
               chr1:4361984-4361847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               103
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               62-199
               

               Cow position:
               chr1:101490261-101490398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               62-203
               

               Cow position:
               chr1:102501044-102500902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               42, 26
               

               Conread position:
               62-204
               

               Cow position:
               chr1:36625588-36625729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               134, 0
               

               Conread position:
               62-206
               

               Cow position:
               chr1:45289924-45290062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               62-206
               

               Cow position:
               chr1:76222649-76222505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               113
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               113, 140
               

               Conread position:
               62-211
               

               Cow position:
               chr1:50642997-50642851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               111
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               62-214
               

               Cow position:
               chr1:22637351-22637205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               62-215
               

               Cow position:
               chr1:17443957-17444112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               141, 42
               

               Conread position:
               62-218
               

               Cow position:
               chr1:5010763-5010608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               121
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               149, 134
               

               Conread position:
               62-220
               

               Cow position:
               chr1:70344113-70344274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               50, 110
               

               Conread position:
               62-220
               

               Cow position:
               chr1:89213280-89213123 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               128, 0
               

               Conread position:
               62-223
               

               Cow position:
               chr1:64705972-64706128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               62-223
               

               Cow position:
               chr1:65160201-65160363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               150, 8
               

               Conread position:
               62-223
               

               Cow position:
               chr1:73904097-73904258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               100, 126
               

               Conread position:
               62-223
               

               Cow position:
               chr1:95829060-95828905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               163
               

               Alignm identity:
               119
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               42, 57
               

               Conread position:
               62-224
               

               Cow position:
               chr1:89335327-89335162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               119
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               62-225
               

               Cow position:
               chr1:3215618-3215455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               117
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               62-225
               

               Cow position:
               chr1:7962735-7962895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               124
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               147, 85
               

               Conread position:
               62-225
               

               Cow position:
               chr1:31801846-31801686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               122
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               140, 52
               

               Conread position:
               62-225
               

               Cow position:
               chr1:45573487-45573644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               120
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               62-226
               

               Cow position:
               chr1:52509693-52509526 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               123
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               140, 92
               

               Conread position:
               62-240
               

               Cow position:
               chr1:16785319-16785145 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               63-191
               

               Cow position:
               chr1:95809623-95809754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               104
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               63-200
               

               Cow position:
               chr1:15102957-15103092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               63-200
               

               Cow position:
               chr1:61564852-61564989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               138
               

               Alignm identity:
               105
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               63-201
               

               Cow position:
               chr1:33080738-33080602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               105
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               63-203
               

               Cow position:
               chr1:61560427-61560285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               63-211
               

               Cow position:
               chr1:82538002-82538144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               63-219
               

               Cow position:
               chr1:50906606-50906458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               59, 0
               

               Conread position:
               63-223
               

               Cow position:
               chr1:67160216-67160058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               125, 105
               

               Conread position:
               63-225
               

               Cow position:
               chr1:43340560-43340396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               134, 51
               

               Conread position:
               64-185
               

               Cow position:
               chr1:72650490-72650368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               46, 0
               
64-214UCSC Genome Browser

               Conread position:
               
               

               Cow position:
               chr1:57087918-57088072 (view  custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               38, 132
               
64-222UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:716512-716353 (view  custom track)

               
               
               
Alignm length:161

               
               
               
Alignm identity:119

               
               
               
Alignm E-value:9e-25

               
               
               
Alignm gaps (pig, cow):128, 51
64-223UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:chr1:3749506-3749350 (view  custom track)

               
               
               
Alignm length:160

               
               
               
Alignm identity:116

               
               
               
Alignm E-value:2e-22

               
               
               
Alignm gaps (pig, cow):99, 0

               
               
               Conread position:65-195
               
               
               Cow position:chr1:100400130-100400001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:65-201
               
               
               Cow position:chr1:31274914-31274778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-207
               
               
               Cow position:chr1:82115912-82115775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:65-215
               
               
               Cow position:chr1:60907487-60907639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:66-204
               
               
               Cow position:chr1:8778258-8778126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:66-213
               
               
               Cow position:chr1:66862898-66863040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):134, 58

               
               
               Conread position:66-214
               
               
               Cow position:chr1:69911180-69911334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:66-222
               
               
               Cow position:chr1:84950156-84950312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):139, 75

               
               
               Conread position:66-225
               
               
               Cow position:chr1:6440472-6440310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 154

               
               
               Conread position:67-207
               
               
               Cow position:chr1:54199317-54199177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):114, 82

               
               
               Conread position:67-223
               
               
               Cow position:chr1:99221555-99221405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:68-211
               
               
               Cow position:chr1:78801900-78801758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:68-216
               
               
               Cow position:chr1:20550967-20551116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 23

               
               
               Conread position:68-216
               
               
               Cow position:chr1:78782064-78782210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:68-223
               
               
               Cow position:chr1:25076158-25076000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:68-230
               
               
               Cow position:chr1:52085816-52085656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:69-185
               
               
               Cow position:chr1:6039297-6039184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:69-221
               
               
               Cow position:chr1:5598988-5599139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 130

               
               
               Conread position:71-212
               
               
               Cow position:chr1:78079809-78079942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:73-183
               
               
               Cow position:chr1:1056127-1056017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-199
               
               
               Cow position:chr1:95966397-95966268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:75-211
               
               
               Cow position:chr1:14067358-14067224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:75-218
               
               
               Cow position:chr1:36306761-36306902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:75-223
               
               
               Cow position:chr1:7597583-7597725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:79-215
               
               
               Cow position:chr1:24876603-24876740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):11, 24

               
               
               Conread position:80-204
               
               
               Cow position:chr1:101860050-101859926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-183
               
               
               Cow position:chr1:91648769-91648871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-217
               
               
               Cow position:chr1:9478393-9478261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:81-219
               
               
               Cow position:chr1:101867738-101867874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:82-204
               
               
               Cow position:chr1:85597266-85597381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:82-219
               
               
               Cow position:chr1:73642351-73642215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 113

               
               
               Conread position:82-232
               
               
               Cow position:chr1:20217501-20217347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):80, 117

               
               
               Conread position:85-185
               
               
               Cow position:chr1:75197997-75198096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:85-186
               
               
               Cow position:chr1:67585644-67585745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-204
               
               
               Cow position:chr1:80312157-80312036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:85-213
               
               
               Cow position:chr1:4303345-4303219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:88-201
               
               
               Cow position:chr1:73576774-73576887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:88-214
               
               
               Cow position:chr1:68664023-68664148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:88-224
               
               
               Cow position:chr1:85223245-85223380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):111, 14

               
               
               Conread position:88-224
               
               
               Cow position:chr1:91912429-91912561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 31

               
               
               Conread position:89-201
               
               
               Cow position:chr1:13167311-13167201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:91-204
               
               
               Cow position:chr1:40192606-40192491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:92-205
               
               
               Cow position:chr1:43144434-43144550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:92-231
               
               
               Cow position:chr1:26447849-26447984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:93-218
               
               
               Cow position:chr1:68400169-68400040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:94-221
               
               
               Cow position:chr1:71319705-71319830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:102-204
               
               
               Cow position:chr1:25699124-25699226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:85
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:102-214
               
               
               Cow position:chr1:5766990-5767103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:108-217
               
               
               Cow position:chr1:22261592-22261702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:108-218
               
               
               Cow position:chr1:60707800-60707911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:111-214
               
               
               Cow position:chr1:5240879-5240776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:117-219
               
               
               Cow position:chr1:22466720-22466619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:119-224
               
               
               Cow position:chr1:47883468-47883364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr10:33915087-33914904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 121

               
               
               Conread position:1-198
               
               
               Cow position:chr10:30261624-30261431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:1-199
               
               
               Cow position:chr10:6436038-6436234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:1-199
               
               
               Cow position:chr10:22616661-22616464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:1-199
               
               
               Cow position:chr10:32928954-32929163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-200
               
               
               Cow position:chr10:31527953-31528145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 61

               
               
               Conread position:1-204
               
               
               Cow position:chr10:19372358-19372152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:1-204
               
               
               Cow position:chr10:50332572-50332774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:1-212
               
               
               Cow position:chr10:28223192-28223405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:1-217
               
               
               Cow position:chr10:5543274-5543056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:1-219
               
               
               Cow position:chr10:11463686-11463464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):64, 200

               
               
               Conread position:1-220
               
               
               Cow position:chr10:64438146-64438368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):66, 89

               
               
               Conread position:1-223
               
               
               Cow position:chr10:48814449-48814228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:2-202
               
               
               Cow position:chr10:19709357-19709564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:2-220
               
               
               Cow position:chr10:46934806-46934580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:2-220
               
               
               Cow position:chr10:64182431-64182639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):61, 8

               
               
               Conread position:3-180
               
               
               Cow position:chr10:47182592-47182408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):23, 90

               
               
               Conread position:3-184
               
               
               Cow position:chr10:51727443-51727264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:3-192
               
               
               Cow position:chr10:40147657-40147460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr10:35981566-35981774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:3-204
               
               
               Cow position:chr10:45871491-45871698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):23, 198

               
               
               Conread position:3-212
               
               
               Cow position:chr10:5889786-5889570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 144

               
               
               Conread position:3-213
               
               
               Cow position:chr10:10027551-10027764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:3-213
               
               
               Cow position:chr10:56733010-56733219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:3-214
               
               
               Cow position:chr10:23379110-23379322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:3-214
               
               
               Cow position:chr10:35249158-35248947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:3-217
               
               
               Cow position:chr10:52881642-52881422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):23, 172

               
               
               Conread position:3-218
               
               
               Cow position:chr10:20391462-20391236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr10:37989279-37989486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 48

               
               
               Conread position:3-218
               
               
               Cow position:chr10:45295166-45294944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 180

               
               
               Conread position:3-219
               
               
               Cow position:chr10:10152986-10153198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 80

               
               
               Conread position:3-219
               
               
               Cow position:chr10:19539846-19539631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:3-219
               
               
               Cow position:chr10:47159191-47159403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:3-220
               
               
               Cow position:chr10:21923544-21923322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 199

               
               
               Conread position:3-221
               
               
               Cow position:chr10:31718407-31718184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):19, 109

               
               
               Conread position:3-223
               
               
               Cow position:chr10:25342575-25342782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr10:63484617-63484837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 123

               
               
               Conread position:3-224
               
               
               Cow position:chr10:16830410-16830185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:4-185
               
               
               Cow position:chr10:33195019-33195208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-187
               
               
               Cow position:chr10:17691251-17691072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 10

               
               
               Conread position:4-192
               
               
               Cow position:chr10:45658123-45658309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 117

               
               
               Conread position:4-201
               
               
               Cow position:chr10:39258511-39258312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):62, 73

               
               
               Conread position:4-204
               
               
               Cow position:chr10:50049887-50050079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:4-204
               
               
               Cow position:chr10:50183066-50182871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:4-207
               
               
               Cow position:chr10:10752011-10751802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:4-208
               
               
               Cow position:chr10:1976336-1976134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 113

               
               
               Conread position:4-208
               
               
               Cow position:chr10:20372147-20371946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:4-212
               
               
               Cow position:chr10:44758786-44758997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:4-212
               
               
               Cow position:chr10:48316969-48316754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:168
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-213
               
               
               Cow position:chr10:24096393-24096175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:4-214
               
               
               Cow position:chr10:52061804-52062020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:4-215
               
               
               Cow position:chr10:6516675-6516894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):20, 207

               
               
               Conread position:4-215
               
               
               Cow position:chr10:22341559-22341768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 123

               
               
               Conread position:4-218
               
               
               Cow position:chr10:38370477-38370256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):22, 101

               
               
               Conread position:4-218
               
               
               Cow position:chr10:62454386-62454169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):61, 156

               
               
               Conread position:4-221
               
               
               Cow position:chr10:41132242-41132461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:4-224
               
               
               Cow position:chr10:26670871-26671085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 68

               
               
               Conread position:4-224
               
               
               Cow position:chr10:31005038-31004815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:4-224
               
               
               Cow position:chr10:51306320-51306535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 103

               
               
               Conread position:4-225
               
               
               Cow position:chr10:29373391-29373172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:4-228
               
               
               Cow position:chr10:17568124-17567900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 131

               
               
               Conread position:5-187
               
               
               Cow position:chr10:21564731-21564914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 62

               
               
               Conread position:5-204
               
               
               Cow position:chr10:52296476-52296678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:5-208
               
               
               Cow position:chr10:54848760-54848964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:5-214
               
               
               Cow position:chr10:10488772-10488570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:5-215
               
               
               Cow position:chr10:19238894-19238687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:5-215
               
               
               Cow position:chr10:57059298-57059083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 195

               
               
               Conread position:5-218
               
               
               Cow position:chr10:38195994-38195780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):19, 71

               
               
               Conread position:5-218
               
               
               Cow position:chr10:46829844-46830068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr10:55382297-55382514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:6-186
               
               
               Cow position:chr10:58149186-58149006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:6-188
               
               
               Cow position:chr10:45476239-45476053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:6-192
               
               
               Cow position:chr10:10137848-10138030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:6-199
               
               
               Cow position:chr10:30787646-30787448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:6-204
               
               
               Cow position:chr10:59203592-59203791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:6-217
               
               
               Cow position:chr10:8476322-8476536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:6-217
               
               
               Cow position:chr10:24871148-24871362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 197

               
               
               Conread position:6-218
               
               
               Cow position:chr10:6718953-6719172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):17, 198

               
               
               Conread position:6-223
               
               
               Cow position:chr10:7291828-7291615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 43

               
               
               Conread position:6-223
               
               
               Cow position:chr10:58637997-58638205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:6-224
               
               
               Cow position:chr10:10575300-10575510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:8-183
               
               
               Cow position:chr10:55122788-55122970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 147

               
               
               Conread position:8-185
               
               
               Cow position:chr10:20133891-20133711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 91

               
               
               Conread position:8-199
               
               
               Cow position:chr10:847240-847051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:8-204
               
               
               Cow position:chr10:41626577-41626774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 157

               
               
               Conread position:8-218
               
               
               Cow position:chr10:40737980-40738184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:8-219
               
               
               Cow position:chr10:37014617-37014833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):7, 154

               
               
               Conread position:8-220
               
               
               Cow position:chr10:53972120-53971907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:9-201
               
               
               Cow position:chr10:18155309-18155500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:9-240
               
               
               Cow position:chr10:43442117-43441888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):57, 112

               
               
               Conread position:10-186
               
               
               Cow position:chr10:17797738-17797554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 100

               
               
               Conread position:10-198
               
               
               Cow position:chr10:38241066-38241256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:10-198
               
               
               Cow position:chr10:64227377-64227565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):21, 39

               
               
               Conread position:10-204
               
               
               Cow position:chr10:38799827-38800022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):55, 171

               
               
               Conread position:10-211
               
               
               Cow position:chr10:19895382-19895583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:10-218
               
               
               Cow position:chr10:66127842-66128043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):54, 19

               
               
               Conread position:10-220
               
               
               Cow position:chr10:29558810-29558590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:10-223
               
               
               Cow position:chr10:19402418-19402633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 9

               
               
               Conread position:10-223
               
               
               Cow position:chr10:25149882-25150088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:10-228
               
               
               Cow position:chr10:18013677-18013898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):56, 22

               
               
               Conread position:11-215
               
               
               Cow position:chr10:21546154-21546360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:11-216
               
               
               Cow position:chr10:14947246-14947447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:11-219
               
               
               Cow position:chr10:47543065-47543266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 154

               
               
               Conread position:11-223
               
               
               Cow position:chr10:19191744-19191951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 14

               
               
               Conread position:12-214
               
               
               Cow position:chr10:54799895-54800105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 177

               
               
               Conread position:12-220
               
               
               Cow position:chr10:12960308-12960098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:14-192
               
               
               Cow position:chr10:33573253-33573077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:14-202
               
               
               Cow position:chr10:19394580-19394387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:14-211
               
               
               Cow position:chr10:8277544-8277744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):6, 20

               
               
               Conread position:14-213
               
               
               Cow position:chr10:9797916-9797721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:14-224
               
               
               Cow position:chr10:52152789-52152999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):49, 10

               
               
               Conread position:15-218
               
               
               Cow position:chr10:7786765-7786968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):49, 14

               
               
               Conread position:16-187
               
               
               Cow position:chr10:48257283-48257111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 33

               
               
               Conread position:16-196
               
               
               Cow position:chr10:44764499-44764316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:16-204
               
               
               Cow position:chr10:34705273-34705459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-213
               
               
               Cow position:chr10:3708120-3708330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:16-219
               
               
               Cow position:chr10:32649247-32649053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):182, 9

               
               
               Conread position:16-223
               
               
               Cow position:chr10:8847155-8847374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:16-232
               
               
               Cow position:chr10:27544449-27544661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:18-219
               
               
               Cow position:chr10:37748383-37748185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:19-183
               
               
               Cow position:chr10:22593919-22594084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:19-189
               
               
               Cow position:chr10:61982384-61982557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-192
               
               
               Cow position:chr10:37174454-37174283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:19-195
               
               
               Cow position:chr10:54776544-54776719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 146

               
               
               Conread position:19-201
               
               
               Cow position:chr10:17844765-17844942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:19-201
               
               
               Cow position:chr10:35638141-35637963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 29

               
               
               Conread position:19-204
               
               
               Cow position:chr10:3985888-3986072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:19-204
               
               
               Cow position:chr10:15298502-15298326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr10:34674016-34674196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:19-206
               
               
               Cow position:chr10:46228687-46228868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 29

               
               
               Conread position:19-213
               
               
               Cow position:chr10:14188612-14188422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:19-214
               
               
               Cow position:chr10:49902573-49902765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:19-216
               
               
               Cow position:chr10:60960933-60961139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 185

               
               
               Conread position:19-220
               
               
               Cow position:chr10:37512240-37512043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:19-220
               
               
               Cow position:chr10:58642313-58642109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-222
               
               
               Cow position:chr10:50390766-50390969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):187, 90

               
               
               Conread position:19-223
               
               
               Cow position:chr10:46318975-46319180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:19-230
               
               
               Cow position:chr10:15249044-15248836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 176

               
               
               Conread position:21-220
               
               
               Cow position:chr10:17518847-17518647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:22-185
               
               
               Cow position:chr10:30929883-30929722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 93

               
               
               Conread position:24-162
               
               
               Cow position:chr10:13197828-13197684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-188
               
               
               Cow position:chr10:23071742-23071576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:24-201
               
               
               Cow position:chr10:24861314-24861491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 106

               
               
               Conread position:24-204
               
               
               Cow position:chr10:45379001-45378820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 172

               
               
               Conread position:24-204
               
               
               Cow position:chr10:61588257-61588076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 174

               
               
               Conread position:24-221
               
               
               Cow position:chr10:25827-26020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 84

               
               
               Conread position:24-223
               
               
               Cow position:chr10:43273041-43272841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 142

               
               
               Conread position:24-223
               
               
               Cow position:chr10:53698410-53698611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 163

               
               
               Conread position:24-227
               
               
               Cow position:chr10:27136685-27136485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-179
               
               
               Cow position:chr10:46575515-46575663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:25-185
               
               
               Cow position:chr10:2708876-2709031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:25-185
               
               
               Cow position:chr10:55319500-55319656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):33, 101

               
               
               Conread position:25-185
               
               
               Cow position:chr10:66194300-66194140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 124

               
               
               Conread position:25-192
               
               
               Cow position:chr10:39387458-39387618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:25-193
               
               
               Cow position:chr10:18042184-18042353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 145

               
               
               Conread position:25-199
               
               
               Cow position:chr10:15383331-15383507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr10:59010131-59009962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):43, 101

               
               
               Conread position:25-199
               
               
               Cow position:chr10:64877706-64877530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:25-202
               
               
               Cow position:chr10:23127982-23127803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 122

               
               
               Conread position:25-204
               
               
               Cow position:chr10:9656518-9656343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:25-204
               
               
               Cow position:chr10:16986336-16986517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr10:22980974-22980798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:25-204
               
               
               Cow position:chr10:30837032-30836851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 172

               
               
               Conread position:25-204
               
               
               Cow position:chr10:35605054-35605224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 100

               
               
               Conread position:25-205
               
               
               Cow position:chr10:35486434-35486250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-208
               
               
               Cow position:chr10:19503279-19503094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 69

               
               
               Conread position:25-208
               
               
               Cow position:chr10:52125680-52125505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):180, 40

               
               
               Conread position:25-212
               
               
               Cow position:chr10:8870819-8871006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:25-212
               
               
               Cow position:chr10:20485555-20485370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:25-212
               
               
               Cow position:chr10:48377393-48377202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:25-213
               
               
               Cow position:chr10:37765038-37765228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-213
               
               
               Cow position:chr10:45965504-45965683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:25-214
               
               
               Cow position:chr10:41268789-41268975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:25-214
               
               
               Cow position:chr10:41618477-41618287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 51

               
               
               Conread position:25-214
               
               
               Cow position:chr10:42637237-42637422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:25-215
               
               
               Cow position:chr10:16598693-16598885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:158
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:25-215
               
               
               Cow position:chr10:21528792-21528986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:25-215
               
               
               Cow position:chr10:44771654-44771838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:25-217
               
               
               Cow position:chr10:1698740-1698547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-217
               
               
               Cow position:chr10:4626528-4626719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:25-217
               
               
               Cow position:chr10:16645182-16644992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-218
               
               
               Cow position:chr10:4184200-4184399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-218
               
               
               Cow position:chr10:51873479-51873287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 153

               
               
               Conread position:25-219
               
               
               Cow position:chr10:44730474-44730279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-219
               
               
               Cow position:chr10:46042998-46043193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):177, 40

               
               
               Conread position:25-223
               
               
               Cow position:chr10:30121410-30121614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 72

               
               
               Conread position:25-223
               
               
               Cow position:chr10:36856127-36855929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:25-225
               
               
               Cow position:chr10:36531725-36531523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 172

               
               
               Conread position:25-228
               
               
               Cow position:chr10:15868256-15868464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-238
               
               
               Cow position:chr10:38944261-38944471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:26-224
               
               
               Cow position:chr10:51283990-51284194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:27-185
               
               
               Cow position:chr10:30801325-30801485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-174
               
               
               Cow position:chr10:38942439-38942587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr10:8281271-8281430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-191
               
               
               Cow position:chr10:23576554-23576709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 87

               
               
               Conread position:28-192
               
               
               Cow position:chr10:55600149-55599984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:28-195
               
               
               Cow position:chr10:48620004-48619841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:28-198
               
               
               Cow position:chr10:25466074-25466246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr10:40163926-40163758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:28-201
               
               
               Cow position:chr10:10148656-10148827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-201
               
               
               Cow position:chr10:22972998-22972825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-201
               
               
               Cow position:chr10:44834179-44834354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr10:4143234-4143057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 76

               
               
               Conread position:28-204
               
               
               Cow position:chr10:7309445-7309267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr10:22390604-22390777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):36, 68

               
               
               Conread position:28-204
               
               
               Cow position:chr10:34607569-34607746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-204
               
               
               Cow position:chr10:46849871-46850049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr10:56996700-56996529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 8

               
               
               Conread position:28-204
               
               
               Cow position:chr10:58044121-58043947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-212
               
               
               Cow position:chr10:28843365-28843548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:28-212
               
               
               Cow position:chr10:31625966-31626153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr10:53945011-53945201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr10:61509936-61509757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:28-216
               
               
               Cow position:chr10:13368360-13368551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr10:11060520-11060337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:28-218
               
               
               Cow position:chr10:32358421-32358615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr10:45337687-45337880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr10:46150878-46151063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:28-218
               
               
               Cow position:chr10:63675228-63675034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr10:41737298-41737491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):178, 140

               
               
               Conread position:28-220
               
               
               Cow position:chr10:5784247-5784057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:28-220
               
               
               Cow position:chr10:9959223-9959416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:28-220
               
               
               Cow position:chr10:26829802-26829608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr10:53706629-53706824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-220
               
               
               Cow position:chr10:59424606-59424800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 139

               
               
               Conread position:28-220
               
               
               Cow position:chr10:61171265-61171456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:28-220
               
               
               Cow position:chr10:61511188-61511383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr10:66379339-66379144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 113

               
               
               Conread position:28-221
               
               
               Cow position:chr10:15602174-15601979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr10:27716833-27716637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr10:67443110-67442922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):176, 70

               
               
               Conread position:28-223
               
               
               Cow position:chr10:32492058-32492256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):21, 185

               
               
               Conread position:28-223
               
               
               Cow position:chr10:46876045-46876242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:28-223
               
               
               Cow position:chr10:62919485-62919287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:28-223
               
               
               Cow position:chr10:66365302-66365504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 176

               
               
               Conread position:28-224
               
               
               Cow position:chr10:24756419-24756613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:28-224
               
               
               Cow position:chr10:39124140-39124335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:28-225
               
               
               Cow position:chr10:20291266-20291062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 178

               
               
               Conread position:28-225
               
               
               Cow position:chr10:33881776-33881576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 192

               
               
               Conread position:28-230
               
               
               Cow position:chr10:44717-44514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:28-232
               
               
               Cow position:chr10:37822602-37822383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-233
               
               
               Cow position:chr10:8811948-8811738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 186

               
               
               Conread position:28-238
               
               
               Cow position:chr10:46266507-46266299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 155

               
               
               Conread position:29-199
               
               
               Cow position:chr10:48353926-48353765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 61

               
               
               Conread position:29-203
               
               
               Cow position:chr10:49142498-49142326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:29-204
               
               
               Cow position:chr10:5607959-5608137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 112

               
               
               Conread position:29-212
               
               
               Cow position:chr10:35731519-35731337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:29-214
               
               
               Cow position:chr10:62219842-62220032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-217
               
               
               Cow position:chr10:24312878-24312697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:29-227
               
               
               Cow position:chr10:2328196-2328392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:31-192
               
               
               Cow position:chr10:60251068-60250901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:32-214
               
               
               Cow position:chr10:51804038-51803856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:32-218
               
               
               Cow position:chr10:69049035-69048846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:33-220
               
               
               Cow position:chr10:15569894-15570084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:33-223
               
               
               Cow position:chr10:37258856-37258665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 106

               
               
               Conread position:35-183
               
               
               Cow position:chr10:64394093-64394243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-201
               
               
               Cow position:chr10:40933772-40933942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 149

               
               
               Conread position:35-220
               
               
               Cow position:chr10:32829244-32829429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:35-225
               
               
               Cow position:chr10:49846789-49846978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 133

               
               
               Conread position:35-226
               
               
               Cow position:chr10:8853566-8853755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:35-232
               
               
               Cow position:chr10:33772461-33772656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:36-192
               
               
               Cow position:chr10:2857063-2857217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:36-198
               
               
               Cow position:chr10:64140285-64140122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:36-199
               
               
               Cow position:chr10:9576033-9575872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 88

               
               
               Conread position:36-199
               
               
               Cow position:chr10:24831066-24830896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 149

               
               
               Conread position:36-204
               
               
               Cow position:chr10:14093227-14093069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr10:19402924-19403095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr10:25968183-25968348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:36-204
               
               
               Cow position:chr10:67379308-67379478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:36-205
               
               
               Cow position:chr10:43460037-43459873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 91

               
               
               Conread position:36-212
               
               
               Cow position:chr10:57095185-57095017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:36-214
               
               
               Cow position:chr10:18011192-18011374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr10:45371071-45371247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:36-216
               
               
               Cow position:chr10:40998872-40999051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 89

               
               
               Conread position:36-220
               
               
               Cow position:chr10:35978944-35979130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr10:52569607-52569793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-226
               
               
               Cow position:chr10:7844565-7844762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):6, 167

               
               
               Conread position:36-233
               
               
               Cow position:chr10:37287160-37286962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 166

               
               
               Conread position:36-234
               
               
               Cow position:chr10:60955500-60955298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 162

               
               
               Conread position:37-221
               
               
               Cow position:chr10:43487729-43487914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):26, 149

               
               
               Conread position:37-222
               
               
               Cow position:chr10:50052060-50051871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:38-236
               
               
               Cow position:chr10:43450880-43450676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:39-199
               
               
               Cow position:chr10:52169109-52168938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-204
               
               
               Cow position:chr10:69934762-69934601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:39-217
               
               
               Cow position:chr10:8161522-8161699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 44

               
               
               Conread position:39-220
               
               
               Cow position:chr10:26750373-26750553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:40-204
               
               
               Cow position:chr10:55050898-55051064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:40-211
               
               
               Cow position:chr10:55577344-55577515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 157

               
               
               Conread position:40-211
               
               
               Cow position:chr10:61146564-61146736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 126

               
               
               Conread position:40-214
               
               
               Cow position:chr10:18154104-18154281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 152

               
               
               Conread position:40-218
               
               
               Cow position:chr10:34603625-34603449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):25, 122

               
               
               Conread position:40-218
               
               
               Cow position:chr10:53766361-53766539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 149

               
               
               Conread position:40-220
               
               
               Cow position:chr10:11282145-11281963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-225
               
               
               Cow position:chr10:7304585-7304766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:41-204
               
               
               Cow position:chr10:47673297-47673125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:42-207
               
               
               Cow position:chr10:20447942-20448102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:42-227
               
               
               Cow position:chr10:35017754-35017943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:50-181
               
               
               Cow position:chr10:32799229-32799098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:50-199
               
               
               Cow position:chr10:24035991-24035842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:50-199
               
               
               Cow position:chr10:28571428-28571579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-204
               
               
               Cow position:chr10:5108826-5108670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-204
               
               
               Cow position:chr10:6964388-6964232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-208
               
               
               Cow position:chr10:25462855-25463009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:50-223
               
               
               Cow position:chr10:45300237-45300067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:51-192
               
               
               Cow position:chr10:24422146-24422002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:53-203
               
               
               Cow position:chr10:57877503-57877655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 146

               
               
               Conread position:54-198
               
               
               Cow position:chr10:33574432-33574285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 62

               
               
               Conread position:54-204
               
               
               Cow position:chr10:31534771-31534920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 61

               
               
               Conread position:54-226
               
               
               Cow position:chr10:17304338-17304165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 110

               
               
               Conread position:56-220
               
               
               Cow position:chr10:35820300-35820139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):156, 80

               
               
               Conread position:58-199
               
               
               Cow position:chr10:55235577-55235434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:58-201
               
               
               Cow position:chr10:4711634-4711778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):7, 140

               
               
               Conread position:58-231
               
               
               Cow position:chr10:36945763-36945587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:60-203
               
               
               Cow position:chr10:65071360-65071501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:61-215
               
               
               Cow position:chr10:32336061-32336215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):139, 43

               
               
               Conread position:61-223
               
               
               Cow position:chr10:14622421-14622585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:62-187
               
               
               Cow position:chr10:63031924-63032049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr10:52574241-52574103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr10:28721819-28721960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr10:35772761-35772620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr10:63758011-63757866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr10:66940800-66940657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 127

               
               
               Conread position:62-207
               
               
               Cow position:chr10:14396613-14396474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr10:4485036-4485181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr10:27328434-27328286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr10:18849566-18849714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):48, 66

               
               
               Conread position:62-217
               
               
               Cow position:chr10:24863063-24862909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr10:37534633-37534783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 63

               
               
               Conread position:62-218
               
               
               Cow position:chr10:48567641-48567797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):19, 136

               
               
               Conread position:62-219
               
               
               Cow position:chr10:11569678-11569837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr10:27262432-27262277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):72, 42

               
               
               Conread position:62-225
               
               
               Cow position:chr10:35720152-35720316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):85, 81

               
               
               Conread position:62-227
               
               
               Cow position:chr10:58606394-58606558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:62-228
               
               
               Cow position:chr10:65681668-65681501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):145, 134

               
               
               Conread position:62-238
               
               
               Cow position:chr10:64863908-64864082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:63-191
               
               
               Cow position:chr10:29713187-29713319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:63-204
               
               
               Cow position:chr10:42312948-42313088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:63-210
               
               
               Cow position:chr10:25475577-25475719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:63-213
               
               
               Cow position:chr10:48130061-48130204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:63-214
               
               
               Cow position:chr10:56303617-56303765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:63-219
               
               
               Cow position:chr10:35715545-35715386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):143, 52

               
               
               Conread position:63-224
               
               
               Cow position:chr10:23346259-23346107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:63-225
               
               
               Cow position:chr10:54263266-54263423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:64-204
               
               
               Cow position:chr10:17983926-17984066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-209
               
               
               Cow position:chr10:14817119-14816974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-213
               
               
               Cow position:chr10:661973-662123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:64-214
               
               
               Cow position:chr10:51690928-51691071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):141, 43

               
               
               Conread position:64-223
               
               
               Cow position:chr10:49686790-49686942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 61

               
               
               Conread position:65-212
               
               
               Cow position:chr10:55013421-55013570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:65-217
               
               
               Cow position:chr10:43909804-43909650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:66-213
               
               
               Cow position:chr10:69621529-69621675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 44

               
               
               Conread position:66-219
               
               
               Cow position:chr10:69937400-69937248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:67-204
               
               
               Cow position:chr10:13363831-13363694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-218
               
               
               Cow position:chr10:53771095-53770941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:67-222
               
               
               Cow position:chr10:33122535-33122379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:67-223
               
               
               Cow position:chr10:69973910-69973752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:68-204
               
               
               Cow position:chr10:2462430-2462297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:68-212
               
               
               Cow position:chr10:35717226-35717082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:71-204
               
               
               Cow position:chr10:13365017-13364884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:73-216
               
               
               Cow position:chr10:42467413-42467557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 139

               
               
               Conread position:74-223
               
               
               Cow position:chr10:24560937-24560789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:80-199
               
               
               Cow position:chr10:22359791-22359664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:80-204
               
               
               Cow position:chr10:55194693-55194575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:80-213
               
               
               Cow position:chr10:40164315-40164186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 44

               
               
               Conread position:80-233
               
               
               Cow position:chr10:38292993-38293144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:82-219
               
               
               Cow position:chr10:37428018-37427881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):132, 114

               
               
               Conread position:85-200
               
               
               Cow position:chr10:6486494-6486607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:85-237
               
               
               Cow position:chr10:15750877-15751030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:88-220
               
               
               Cow position:chr10:6174239-6174108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:90-215
               
               
               Cow position:chr10:1073022-1072895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):107, 19

               
               
               Conread position:91-203
               
               
               Cow position:chr10:52364865-52364978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:91-204
               
               
               Cow position:chr10:50151479-50151366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:91-224
               
               
               Cow position:chr10:24072216-24072085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:104-219
               
               
               Cow position:chr10:19394368-19394257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:104-219
               
               
               Cow position:chr10:41408348-41408464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:104-238
               
               
               Cow position:chr10:42574111-42574241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:108-224
               
               
               Cow position:chr10:53696193-53696309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-170
               
               
               Cow position:chr11:35139892-35140066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr11:49207696-49207883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:1-197
               
               
               Cow position:chr11:35352054-35351850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 38

               
               
               Conread position:1-206
               
               
               Cow position:chr11:47310999-47310793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):65, 197

               
               
               Conread position:1-215
               
               
               Cow position:chr11:62889909-62889690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:1-216
               
               
               Cow position:chr11:15366986-15366775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):64, 121

               
               
               Conread position:1-218
               
               
               Cow position:chr11:3739938-3740168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-218
               
               
               Cow position:chr11:66939608-66939391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 196

               
               
               Conread position:1-218
               
               
               Cow position:chr11:73940575-73940359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 15

               
               
               Conread position:1-223
               
               
               Cow position:chr11:70206305-70206525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:1-224
               
               
               Cow position:chr11:12555325-12555095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):25, 200

               
               
               Conread position:1-226
               
               
               Cow position:chr11:21830227-21829998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 116

               
               
               Conread position:1-228
               
               
               Cow position:chr11:8496019-8496247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):65, 89

               
               
               Conread position:1-235
               
               
               Cow position:chr11:8669995-8670236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):12, 233

               
               
               Conread position:2-186
               
               
               Cow position:chr11:77705744-77705922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:2-204
               
               
               Cow position:chr11:36112409-36112610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 12

               
               
               Conread position:2-216
               
               
               Cow position:chr11:47784760-47784980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 199

               
               
               Conread position:2-226
               
               
               Cow position:chr11:30165497-30165719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:3-182
               
               
               Cow position:chr11:4199258-4199442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):10, 18

               
               
               Conread position:3-186
               
               
               Cow position:chr11:22676098-22676284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 68

               
               
               Conread position:3-192
               
               
               Cow position:chr11:34644638-34644836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr11:64029280-64029083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 94

               
               
               Conread position:3-203
               
               
               Cow position:chr11:68909863-68909665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:3-204
               
               
               Cow position:chr11:1980281-1980076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):10, 198

               
               
               Conread position:3-204
               
               
               Cow position:chr11:62230163-62230378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-211
               
               
               Cow position:chr11:6245301-6245518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 111

               
               
               Conread position:3-211
               
               
               Cow position:chr11:25783695-25783912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:3-211
               
               
               Cow position:chr11:78381078-78380874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 124

               
               
               Conread position:3-213
               
               
               Cow position:chr11:19247216-19247006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:3-214
               
               
               Cow position:chr11:27907763-27907969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:3-216
               
               
               Cow position:chr11:36520857-36521082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):26, 120

               
               
               Conread position:3-217
               
               
               Cow position:chr11:53816840-53817057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 194

               
               
               Conread position:3-217
               
               
               Cow position:chr11:53888653-53888448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):81, 26

               
               
               Conread position:3-217
               
               
               Cow position:chr11:75480037-75479824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:3-217
               
               
               Cow position:chr11:80370103-80370315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):60, 36

               
               
               Conread position:3-218
               
               
               Cow position:chr11:14649331-14649105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr11:41134083-41133879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr11:55333892-55334120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 206

               
               
               Conread position:3-218
               
               
               Cow position:chr11:70483869-70483652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:3-223
               
               
               Cow position:chr11:4221301-4221522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:3-223
               
               
               Cow position:chr11:32777662-32777880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:3-223
               
               
               Cow position:chr11:63396801-63397027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 191

               
               
               Conread position:3-224
               
               
               Cow position:chr11:16314855-16315084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr11:45742360-45742577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:3-225
               
               
               Cow position:chr11:10956890-10956665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):20, 116

               
               
               Conread position:3-225
               
               
               Cow position:chr11:23272019-23271797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 136

               
               
               Conread position:3-225
               
               
               Cow position:chr11:56288528-56288752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:3-225
               
               
               Cow position:chr11:57503465-57503690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:3-227
               
               
               Cow position:chr11:4150934-4151153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:3-228
               
               
               Cow position:chr11:68883701-68883932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):20, 201

               
               
               Conread position:4-169
               
               
               Cow position:chr11:18792084-18791908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr11:34144930-34144750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:4-183
               
               
               Cow position:chr11:44016964-44017153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:4-185
               
               
               Cow position:chr11:35109554-35109369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:4-185
               
               
               Cow position:chr11:35149382-35149573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):22, 81

               
               
               Conread position:4-191
               
               
               Cow position:chr11:29786509-29786316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-201
               
               
               Cow position:chr11:81041986-81041775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-204
               
               
               Cow position:chr11:53510516-53510306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):17, 203

               
               
               Conread position:4-206
               
               
               Cow position:chr11:64408960-64409157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 47

               
               
               Conread position:4-211
               
               
               Cow position:chr11:23251607-23251403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:4-213
               
               
               Cow position:chr11:5559274-5559479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):62, 31

               
               
               Conread position:4-213
               
               
               Cow position:chr11:41576884-41576673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:4-217
               
               
               Cow position:chr11:53778600-53778821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 199

               
               
               Conread position:4-217
               
               
               Cow position:chr11:77013768-77013976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 91

               
               
               Conread position:4-218
               
               
               Cow position:chr11:63065641-63065854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 131

               
               
               Conread position:4-218
               
               
               Cow position:chr11:64009711-64009928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:4-219
               
               
               Cow position:chr11:13864119-13863897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 190

               
               
               Conread position:4-219
               
               
               Cow position:chr11:40395423-40395640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 121

               
               
               Conread position:4-219
               
               
               Cow position:chr11:84385653-84385435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 168

               
               
               Conread position:4-223
               
               
               Cow position:chr11:15369371-15369601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-223
               
               
               Cow position:chr11:48776327-48776101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:4-223
               
               
               Cow position:chr11:78820141-78820356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:4-230
               
               
               Cow position:chr11:70756466-70756687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):17, 109

               
               
               Conread position:5-183
               
               
               Cow position:chr11:39855029-39854853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 127

               
               
               Conread position:5-199
               
               
               Cow position:chr11:30638959-30638767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):6, 21

               
               
               Conread position:5-199
               
               
               Cow position:chr11:68326879-68326677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:5-203
               
               
               Cow position:chr11:34778451-34778253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:5-208
               
               
               Cow position:chr11:9836466-9836261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:5-213
               
               
               Cow position:chr11:37100184-37099975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):19, 108

               
               
               Conread position:5-213
               
               
               Cow position:chr11:42497835-42498041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 45

               
               
               Conread position:5-219
               
               
               Cow position:chr11:19592010-19591793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):20, 169

               
               
               Conread position:5-221
               
               
               Cow position:chr11:3714810-3715028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):15, 208

               
               
               Conread position:5-221
               
               
               Cow position:chr11:30172294-30172505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):20, 107

               
               
               Conread position:5-223
               
               
               Cow position:chr11:87172092-87171868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):21, 136

               
               
               Conread position:6-186
               
               
               Cow position:chr11:8545031-8544845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 177

               
               
               Conread position:6-192
               
               
               Cow position:chr11:46998972-46999164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):61, 7

               
               
               Conread position:6-199
               
               
               Cow position:chr11:35723954-35724155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:6-214
               
               
               Cow position:chr11:54428609-54428821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-214
               
               
               Cow position:chr11:63975119-63975334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-219
               
               
               Cow position:chr11:13940178-13940390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:6-223
               
               
               Cow position:chr11:12079822-12080052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:6-223
               
               
               Cow position:chr11:27913274-27913491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 121

               
               
               Conread position:6-224
               
               
               Cow position:chr11:21507992-21508219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 201

               
               
               Conread position:6-224
               
               
               Cow position:chr11:77745264-77745038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:7-191
               
               
               Cow position:chr11:68660624-68660437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):19, 176

               
               
               Conread position:7-204
               
               
               Cow position:chr11:10066341-10066539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:7-204
               
               
               Cow position:chr11:26823102-26823302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:7-227
               
               
               Cow position:chr11:35434677-35434441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-130
               
               
               Cow position:chr11:62168341-62168214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 91

               
               
               Conread position:8-197
               
               
               Cow position:chr11:80413025-80412826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:9-183
               
               
               Cow position:chr11:35926914-35926740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:10-192
               
               
               Cow position:chr11:21844143-21843961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):12, 63

               
               
               Conread position:10-204
               
               
               Cow position:chr11:19549474-19549666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):16, 103

               
               
               Conread position:10-204
               
               
               Cow position:chr11:46747871-46747669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-212
               
               
               Cow position:chr11:47110242-47110452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:10-219
               
               
               Cow position:chr11:41980215-41979997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 166

               
               
               Conread position:10-219
               
               
               Cow position:chr11:62742653-62742441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:10-223
               
               
               Cow position:chr11:30370099-30370320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):16, 104

               
               
               Conread position:11-219
               
               
               Cow position:chr11:48296024-48296227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:12-199
               
               
               Cow position:chr11:30209828-30209638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 156

               
               
               Conread position:12-212
               
               
               Cow position:chr11:63407691-63407890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:12-225
               
               
               Cow position:chr11:5328780-5328995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:14-166
               
               
               Cow position:chr11:17807962-17807809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:14-227
               
               
               Cow position:chr11:24438222-24438007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:16-201
               
               
               Cow position:chr11:6594238-6594043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 39

               
               
               Conread position:16-203
               
               
               Cow position:chr11:77241708-77241890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:16-224
               
               
               Cow position:chr11:47411842-47412051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):53, 192

               
               
               Conread position:19-167
               
               
               Cow position:chr11:34136245-34136394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:19-186
               
               
               Cow position:chr11:32782879-32782702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-199
               
               
               Cow position:chr11:21421932-21421753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:19-200
               
               
               Cow position:chr11:70458046-70458230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 81

               
               
               Conread position:19-202
               
               
               Cow position:chr11:63499126-63498942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:19-203
               
               
               Cow position:chr11:41986041-41985859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 111

               
               
               Conread position:19-204
               
               
               Cow position:chr11:32260538-32260721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):126, 48

               
               
               Conread position:19-204
               
               
               Cow position:chr11:37778821-37778628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):46, 184

               
               
               Conread position:19-204
               
               
               Cow position:chr11:60296735-60296928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 20

               
               
               Conread position:19-204
               
               
               Cow position:chr11:62811302-62811486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):51, 106

               
               
               Conread position:19-205
               
               
               Cow position:chr11:58102756-58102567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 37

               
               
               Conread position:19-207
               
               
               Cow position:chr11:69417406-69417595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):46, 184

               
               
               Conread position:19-208
               
               
               Cow position:chr11:42786683-42786488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:19-214
               
               
               Cow position:chr11:29659564-29659761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:19-216
               
               
               Cow position:chr11:33368087-33368271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-216
               
               
               Cow position:chr11:42066869-42067064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):48, 94

               
               
               Conread position:19-217
               
               
               Cow position:chr11:19579011-19578820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:19-218
               
               
               Cow position:chr11:13500020-13500214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:19-218
               
               
               Cow position:chr11:32710519-32710720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-219
               
               
               Cow position:chr11:64781091-64781295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-220
               
               
               Cow position:chr11:23220367-23220565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 96

               
               
               Conread position:19-220
               
               
               Cow position:chr11:40794347-40794141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):45, 76

               
               
               Conread position:19-220
               
               
               Cow position:chr11:81614509-81614318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:19-221
               
               
               Cow position:chr11:21124606-21124406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:19-223
               
               
               Cow position:chr11:18509026-18508818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-225
               
               
               Cow position:chr11:6395758-6395963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 67

               
               
               Conread position:19-225
               
               
               Cow position:chr11:42016634-42016429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):46, 16

               
               
               Conread position:20-204
               
               
               Cow position:chr11:25620384-25620200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):45, 13

               
               
               Conread position:22-204
               
               
               Cow position:chr11:27413804-27413620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):83, 29

               
               
               Conread position:22-214
               
               
               Cow position:chr11:11483318-11483521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:22-216
               
               
               Cow position:chr11:69168594-69168789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:24-204
               
               
               Cow position:chr11:30708516-30708693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 41

               
               
               Conread position:24-204
               
               
               Cow position:chr11:79548928-79548743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:24-204
               
               
               Cow position:chr11:83397915-83398098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:24-216
               
               
               Cow position:chr11:9237837-9237648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 139

               
               
               Conread position:24-220
               
               
               Cow position:chr11:1380685-1380882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 187

               
               
               Conread position:25-181
               
               
               Cow position:chr11:60486408-60486249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 137

               
               
               Conread position:25-183
               
               
               Cow position:chr11:26633003-26632844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 145

               
               
               Conread position:25-185
               
               
               Cow position:chr11:2835869-2836031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr11:39554181-39554018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-186
               
               
               Cow position:chr11:13043135-13042976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):45, 99

               
               
               Conread position:25-186
               
               
               Cow position:chr11:20234695-20234858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-186
               
               
               Cow position:chr11:26343112-26343274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:25-186
               
               
               Cow position:chr11:36920566-36920406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:25-186
               
               
               Cow position:chr11:60720445-60720282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-195
               
               
               Cow position:chr11:35981131-35980960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:25-197
               
               
               Cow position:chr11:31875103-31875277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr11:49149059-49149231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):20, 95

               
               
               Conread position:25-199
               
               
               Cow position:chr11:85723708-85723879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:25-201
               
               
               Cow position:chr11:5176366-5176194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:25-201
               
               
               Cow position:chr11:29677217-29677393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:25-201
               
               
               Cow position:chr11:42084665-42084487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:25-203
               
               
               Cow position:chr11:38223777-38223604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 58

               
               
               Conread position:25-203
               
               
               Cow position:chr11:38334534-38334709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-204
               
               
               Cow position:chr11:1067429-1067249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 164

               
               
               Conread position:25-204
               
               
               Cow position:chr11:19148126-19147952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:25-204
               
               
               Cow position:chr11:26144085-26143909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 140

               
               
               Conread position:25-204
               
               
               Cow position:chr11:33373976-33374156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 132

               
               
               Conread position:25-204
               
               
               Cow position:chr11:40459118-40459295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 141

               
               
               Conread position:25-204
               
               
               Cow position:chr11:46922875-46922697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):43, 72

               
               
               Conread position:25-204
               
               
               Cow position:chr11:48659945-48660120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 104

               
               
               Conread position:25-204
               
               
               Cow position:chr11:50472327-50472508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-204
               
               
               Cow position:chr11:70600818-70600638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr11:75749490-75749655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-205
               
               
               Cow position:chr11:41213059-41213243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:25-207
               
               
               Cow position:chr11:18924756-18924938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 178

               
               
               Conread position:25-207
               
               
               Cow position:chr11:41215743-41215924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 130

               
               
               Conread position:25-207
               
               
               Cow position:chr11:71854268-71854088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):163, 41

               
               
               Conread position:25-212
               
               
               Cow position:chr11:2327696-2327884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:25-212
               
               
               Cow position:chr11:42884775-42884588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:25-213
               
               
               Cow position:chr11:6006323-6006509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:25-213
               
               
               Cow position:chr11:35347742-35347554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 164

               
               
               Conread position:25-214
               
               
               Cow position:chr11:37435977-37435786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):41, 98

               
               
               Conread position:25-214
               
               
               Cow position:chr11:45619363-45619550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:25-216
               
               
               Cow position:chr11:49396515-49396322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-217
               
               
               Cow position:chr11:2084154-2084349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-217
               
               
               Cow position:chr11:53773692-53773883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:25-218
               
               
               Cow position:chr11:5219150-5218965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:25-218
               
               
               Cow position:chr11:7874149-7874344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):41, 174

               
               
               Conread position:25-218
               
               
               Cow position:chr11:17517409-17517603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 145

               
               
               Conread position:25-218
               
               
               Cow position:chr11:43914302-43914498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-218
               
               
               Cow position:chr11:65058602-65058409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:25-218
               
               
               Cow position:chr11:66041289-66041477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:25-219
               
               
               Cow position:chr11:17889720-17889523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):28, 173

               
               
               Conread position:25-219
               
               
               Cow position:chr11:25791684-25791488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr11:39462634-39462825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:25-219
               
               
               Cow position:chr11:45350501-45350303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr11:10563019-10563208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:25-220
               
               
               Cow position:chr11:18119512-18119706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):28, 138

               
               
               Conread position:25-220
               
               
               Cow position:chr11:79666251-79666059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:25-223
               
               
               Cow position:chr11:17676362-17676165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:25-223
               
               
               Cow position:chr11:47314421-47314215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 7

               
               
               Conread position:25-224
               
               
               Cow position:chr11:42835940-42835746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:25-224
               
               
               Cow position:chr11:77017252-77017443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:25-225
               
               
               Cow position:chr11:15772703-15772508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:25-228
               
               
               Cow position:chr11:66099852-66099644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):41, 191

               
               
               Conread position:25-229
               
               
               Cow position:chr11:13592746-13592952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-230
               
               
               Cow position:chr11:81066039-81065840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-239
               
               
               Cow position:chr11:21590395-21590613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):11, 175

               
               
               Conread position:27-210
               
               
               Cow position:chr11:7250104-7250291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:27-213
               
               
               Cow position:chr11:35733071-35732883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:27-214
               
               
               Cow position:chr11:71110905-71111097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:27-220
               
               
               Cow position:chr11:32800638-32800833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:27-228
               
               
               Cow position:chr11:23217582-23217785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:28-180
               
               
               Cow position:chr11:8684066-8683912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr11:55117458-55117613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 140

               
               
               Conread position:28-186
               
               
               Cow position:chr11:21173424-21173265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:28-192
               
               
               Cow position:chr11:63484951-63485110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:28-195
               
               
               Cow position:chr11:78544297-78544466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-198
               
               
               Cow position:chr11:35182975-35182803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr11:1625210-1625038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:28-199
               
               
               Cow position:chr11:6580846-6581019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr11:37804540-37804366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-201
               
               
               Cow position:chr11:30322479-30322308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:28-204
               
               
               Cow position:chr11:20684558-20684380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr11:59471115-59471294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr11:70950884-70951057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-206
               
               
               Cow position:chr11:30808580-30808405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 137

               
               
               Conread position:28-207
               
               
               Cow position:chr11:31024793-31024608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-208
               
               
               Cow position:chr11:36092903-36092725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):19, 82

               
               
               Conread position:28-212
               
               
               Cow position:chr11:3896687-3896502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 168

               
               
               Conread position:28-213
               
               
               Cow position:chr11:5416898-5417085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-213
               
               
               Cow position:chr11:26442491-26442305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):37, 164

               
               
               Conread position:28-213
               
               
               Cow position:chr11:86664768-86664583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 169

               
               
               Conread position:28-214
               
               
               Cow position:chr11:44619968-44620153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:28-214
               
               
               Cow position:chr11:55636212-55636022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr11:81300607-81300420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:28-215
               
               
               Cow position:chr11:23278951-23278764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 118

               
               
               Conread position:28-216
               
               
               Cow position:chr11:63999078-63998890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 167

               
               
               Conread position:28-216
               
               
               Cow position:chr11:75090205-75090018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:28-218
               
               
               Cow position:chr11:41239177-41238987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:28-218
               
               
               Cow position:chr11:48315383-48315197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:28-218
               
               
               Cow position:chr11:55744481-55744673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):38, 185

               
               
               Conread position:28-218
               
               
               Cow position:chr11:81673439-81673631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 176

               
               
               Conread position:28-219
               
               
               Cow position:chr11:2788407-2788598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:28-219
               
               
               Cow position:chr11:6857742-6857936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 165

               
               
               Conread position:28-219
               
               
               Cow position:chr11:23518606-23518412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr11:41438173-41437980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr11:77758747-77758552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:28-220
               
               
               Cow position:chr11:8437680-8437484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 151

               
               
               Conread position:28-220
               
               
               Cow position:chr11:35562733-35562926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:28-220
               
               
               Cow position:chr11:38226256-38226452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:28-220
               
               
               Cow position:chr11:46884387-46884586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr11:32254203-32254010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:28-221
               
               
               Cow position:chr11:32653302-32653499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr11:36058810-36059006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr11:52132808-52132612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:28-222
               
               
               Cow position:chr11:5075214-5075022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:28-223
               
               
               Cow position:chr11:26535800-26535992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-223
               
               
               Cow position:chr11:35923868-35924067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr11:67571886-67572081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:28-224
               
               
               Cow position:chr11:7652053-7651856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 155

               
               
               Conread position:28-224
               
               
               Cow position:chr11:18425227-18425027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr11:29308594-29308792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:28-225
               
               
               Cow position:chr11:34968600-34968402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr11:59024346-59024141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:28-227
               
               
               Cow position:chr11:26057637-26057434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-228
               
               
               Cow position:chr11:3597131-3597335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-229
               
               
               Cow position:chr11:35444058-35444260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-230
               
               
               Cow position:chr11:35924074-35924278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:28-232
               
               
               Cow position:chr11:48672726-48672934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-233
               
               
               Cow position:chr11:55399138-55398936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:28-238
               
               
               Cow position:chr11:30894990-30894785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:29-198
               
               
               Cow position:chr11:6233865-6233694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-204
               
               
               Cow position:chr11:1485212-1485044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:29-204
               
               
               Cow position:chr11:66188302-66188131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 66

               
               
               Conread position:29-206
               
               
               Cow position:chr11:58048346-58048524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:29-208
               
               
               Cow position:chr11:49486793-49486983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-212
               
               
               Cow position:chr11:80008053-80007867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 61

               
               
               Conread position:29-214
               
               
               Cow position:chr11:46314025-46314211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 166

               
               
               Conread position:29-217
               
               
               Cow position:chr11:40012175-40011985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:29-219
               
               
               Cow position:chr11:33369165-33369362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-219
               
               
               Cow position:chr11:36847182-36847370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:30-218
               
               
               Cow position:chr11:31554763-31554573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 58

               
               
               Conread position:30-223
               
               
               Cow position:chr11:6320117-6319921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:30-224
               
               
               Cow position:chr11:63435536-63435734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:32-204
               
               
               Cow position:chr11:70382673-70382499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-220
               
               
               Cow position:chr11:32108671-32108481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:32-223
               
               
               Cow position:chr11:3920286-3920092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:33-203
               
               
               Cow position:chr11:73637873-73638044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:33-210
               
               
               Cow position:chr11:43641405-43641585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-218
               
               
               Cow position:chr11:68913159-68913346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:35-198
               
               
               Cow position:chr11:36300561-36300400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:35-204
               
               
               Cow position:chr11:10095364-10095533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):28, 78

               
               
               Conread position:35-204
               
               
               Cow position:chr11:38236272-38236435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 114

               
               
               Conread position:35-218
               
               
               Cow position:chr11:62606437-62606621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:35-221
               
               
               Cow position:chr11:57608439-57608259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:35-224
               
               
               Cow position:chr11:83028014-83028205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:35-226
               
               
               Cow position:chr11:46010233-46010048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:36-198
               
               
               Cow position:chr11:67208274-67208433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:36-204
               
               
               Cow position:chr11:31525900-31526070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr11:36914545-36914364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr11:63475651-63475474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 148

               
               
               Conread position:36-218
               
               
               Cow position:chr11:25968832-25968650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):30, 17

               
               
               Conread position:36-218
               
               
               Cow position:chr11:37564894-37565073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 91

               
               
               Conread position:36-219
               
               
               Cow position:chr11:38833-39024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:36-219
               
               
               Cow position:chr11:63849930-63849747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):29, 174

               
               
               Conread position:36-220
               
               
               Cow position:chr11:171695-171509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr11:36977827-36978015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr11:76896353-76896166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-221
               
               
               Cow position:chr11:81143520-81143337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:36-222
               
               
               Cow position:chr11:36182716-36182903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:36-222
               
               
               Cow position:chr11:57767211-57767399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:36-223
               
               
               Cow position:chr11:80893802-80893992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-224
               
               
               Cow position:chr11:49210800-49210611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):29, 63

               
               
               Conread position:36-225
               
               
               Cow position:chr11:36976395-36976586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 15

               
               
               Conread position:36-228
               
               
               Cow position:chr11:71303600-71303790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:36-231
               
               
               Cow position:chr11:3728506-3728703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:37-212
               
               
               Cow position:chr11:63483964-63484136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 81

               
               
               Conread position:37-213
               
               
               Cow position:chr11:40517094-40516915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-219
               
               
               Cow position:chr11:36194319-36194499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):28, 89

               
               
               Conread position:37-219
               
               
               Cow position:chr11:70422572-70422390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:37-222
               
               
               Cow position:chr11:34646611-34646805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:37-222
               
               
               Cow position:chr11:62620398-62620582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):5, 94

               
               
               Conread position:37-224
               
               
               Cow position:chr11:47905841-47905654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 18

               
               
               Conread position:39-204
               
               
               Cow position:chr11:68570356-68570193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:39-220
               
               
               Cow position:chr11:34616284-34616467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-220
               
               
               Cow position:chr11:62102423-62102240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-223
               
               
               Cow position:chr11:18777575-18777382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 187

               
               
               Conread position:39-223
               
               
               Cow position:chr11:52690496-52690315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 60

               
               
               Conread position:39-225
               
               
               Cow position:chr11:44176620-44176797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:40-203
               
               
               Cow position:chr11:45277126-45276960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):28, 160

               
               
               Conread position:40-204
               
               
               Cow position:chr11:41281070-41281236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-205
               
               
               Cow position:chr11:19657188-19657025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:40-214
               
               
               Cow position:chr11:17553055-17552881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:40-214
               
               
               Cow position:chr11:41140912-41141082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:40-218
               
               
               Cow position:chr11:73573671-73573850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):8, 12

               
               
               Conread position:40-221
               
               
               Cow position:chr11:36361617-36361433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr11:4363888-4363702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:41-185
               
               
               Cow position:chr11:45872284-45872139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:41-197
               
               
               Cow position:chr11:63695819-63695655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-198
               
               
               Cow position:chr11:27248517-27248672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:41-211
               
               
               Cow position:chr11:30964369-30964537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:41-215
               
               
               Cow position:chr11:75285733-75285557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):24, 159

               
               
               Conread position:41-218
               
               
               Cow position:chr11:62964520-62964698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:41-220
               
               
               Cow position:chr11:35805685-35805866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:42-223
               
               
               Cow position:chr11:64126238-64126422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:44-214
               
               
               Cow position:chr11:33271460-33271629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):21, 62

               
               
               Conread position:44-221
               
               
               Cow position:chr11:23297691-23297869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:48-220
               
               
               Cow position:chr11:23279124-23278949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):17, 150

               
               
               Conread position:49-208
               
               
               Cow position:chr11:28078528-28078683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:50-176
               
               
               Cow position:chr11:63202213-63202085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-180
               
               
               Cow position:chr11:86925925-86925797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:50-204
               
               
               Cow position:chr11:41278221-41278377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-216
               
               
               Cow position:chr11:63491053-63491220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:50-218
               
               
               Cow position:chr11:24551426-24551595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):44, 162

               
               
               Conread position:50-219
               
               
               Cow position:chr11:17508515-17508349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:50-220
               
               
               Cow position:chr11:17369566-17369731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):15, 73

               
               
               Conread position:51-192
               
               
               Cow position:chr11:8828044-8828188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:51-214
               
               
               Cow position:chr11:22102719-22102558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:53-204
               
               
               Cow position:chr11:51683254-51683406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:53-213
               
               
               Cow position:chr11:2830695-2830855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:53-213
               
               
               Cow position:chr11:69035197-69035358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 143

               
               
               Conread position:53-224
               
               
               Cow position:chr11:30874319-30874492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:54-185
               
               
               Cow position:chr11:64023065-64022939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 38

               
               
               Conread position:54-215
               
               
               Cow position:chr11:13261238-13261404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:56-235
               
               
               Cow position:chr11:35544126-35544307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 139

               
               
               Conread position:59-225
               
               
               Cow position:chr11:1159857-1160023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:60-212
               
               
               Cow position:chr11:58022068-58021913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 109

               
               
               Conread position:62-184
               
               
               Cow position:chr11:899483-899606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr11:53460746-53460883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 43

               
               
               Conread position:62-204
               
               
               Cow position:chr11:18574806-18574664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr11:36940546-36940404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr11:38657134-38656994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr11:68592067-68592208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr11:69120726-69120575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr11:1265494-1265342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr11:5217412-5217261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 68

               
               
               Conread position:62-216
               
               
               Cow position:chr11:32817767-32817618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr11:70634736-70634898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr11:7464986-7464830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr11:4995308-4995150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr11:7571674-7571826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):143, 45

               
               
               Conread position:62-219
               
               
               Cow position:chr11:9088067-9087914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:62-219
               
               
               Cow position:chr11:13397458-13397305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:62-220
               
               
               Cow position:chr11:290471-290312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr11:15745036-15744881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):117, 42

               
               
               Conread position:62-220
               
               
               Cow position:chr11:65436270-65436427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:62-221
               
               
               Cow position:chr11:83042194-83042034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 136

               
               
               Conread position:62-221
               
               
               Cow position:chr11:84757882-84758034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):140, 84

               
               
               Conread position:62-222
               
               
               Cow position:chr11:35922148-35921992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr11:13279217-13279376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr11:80695193-80695034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:62-226
               
               
               Cow position:chr11:75557880-75557710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):55, 141

               
               
               Conread position:62-228
               
               
               Cow position:chr11:65939813-65939648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:62-233
               
               
               Cow position:chr11:49192408-49192238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 135

               
               
               Conread position:62-235
               
               
               Cow position:chr11:76890095-76890259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:62-237
               
               
               Cow position:chr11:5961355-5961524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:63-212
               
               
               Cow position:chr11:81175648-81175794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:63-214
               
               
               Cow position:chr11:30986689-30986834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:63-215
               
               
               Cow position:chr11:9691055-9691212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):52, 102

               
               
               Conread position:63-218
               
               
               Cow position:chr11:30528649-30528806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):58, 149

               
               
               Conread position:63-219
               
               
               Cow position:chr11:70821095-70821249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:63-220
               
               
               Cow position:chr11:1932439-1932280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 49

               
               
               Conread position:63-220
               
               
               Cow position:chr11:65431569-65431724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):45, 62

               
               
               Conread position:63-221
               
               
               Cow position:chr11:32587073-32586917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):135, 51

               
               
               Conread position:64-184
               
               
               Cow position:chr11:80504111-80503991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-212
               
               
               Cow position:chr11:81167981-81167835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:64-219
               
               
               Cow position:chr11:36136156-36136312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 134

               
               
               Conread position:64-220
               
               
               Cow position:chr11:67345612-67345458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:65-214
               
               
               Cow position:chr11:85571753-85571606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:65-220
               
               
               Cow position:chr11:64607198-64607039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:65-223
               
               
               Cow position:chr11:39337373-39337534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:66-204
               
               
               Cow position:chr11:67931439-67931301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-221
               
               
               Cow position:chr11:63519046-63519201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):138, 117

               
               
               Conread position:66-233
               
               
               Cow position:chr11:56449388-56449220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:67-183
               
               
               Cow position:chr11:57873863-57873977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:67-201
               
               
               Cow position:chr11:4436388-4436519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:67-217
               
               
               Cow position:chr11:79467135-79466987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:68-192
               
               
               Cow position:chr11:43594373-43594250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:68-197
               
               
               Cow position:chr11:14447565-14447694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-225
               
               
               Cow position:chr11:8259131-8259288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:70-185
               
               
               Cow position:chr11:67417866-67417980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:75-185
               
               
               Cow position:chr11:48888300-48888192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:75-204
               
               
               Cow position:chr11:28850311-28850438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:75-214
               
               
               Cow position:chr11:43737045-43736910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 14

               
               
               Conread position:76-223
               
               
               Cow position:chr11:68028934-68029081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:77-215
               
               
               Cow position:chr11:77383091-77383227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:80-186
               
               
               Cow position:chr11:70273528-70273633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:80-217
               
               
               Cow position:chr11:9293862-9293999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 25

               
               
               Conread position:81-212
               
               
               Cow position:chr11:43627997-43627871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:85-218
               
               
               Cow position:chr11:60143021-60142888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):8, 120

               
               
               Conread position:85-220
               
               
               Cow position:chr11:28092522-28092656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:85-224
               
               
               Cow position:chr11:81043461-81043320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:87-217
               
               
               Cow position:chr11:60488354-60488484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:88-204
               
               
               Cow position:chr11:21637526-21637412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:88-216
               
               
               Cow position:chr11:68909460-68909333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:88-236
               
               
               Cow position:chr11:20823804-20823656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-208
               
               
               Cow position:chr11:85262593-85262710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:90-213
               
               
               Cow position:chr11:30111682-30111812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:91-185
               
               
               Cow position:chr11:17221486-17221392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:80
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:91-206
               
               
               Cow position:chr11:866357-866472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:92-212
               
               
               Cow position:chr11:71481946-71481824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:93-191
               
               
               Cow position:chr11:33345597-33345694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:93-240
               
               
               Cow position:chr11:41295143-41294993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):124, 23

               
               
               Conread position:94-215
               
               
               Cow position:chr11:55830147-55830027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:97-224
               
               
               Cow position:chr11:54438101-54437973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:101-217
               
               
               Cow position:chr11:72568379-72568264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:102-232
               
               
               Cow position:chr11:58185960-58186090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 92

               
               
               Conread position:104-223
               
               
               Cow position:chr11:59744086-59744207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:108-212
               
               
               Cow position:chr11:4785898-4786002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:114-223
               
               
               Cow position:chr11:36299751-36299863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:115-212
               
               
               Cow position:chr11:37982447-37982349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:115-213
               
               
               Cow position:chr11:34623315-34623413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:81
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-175
               
               
               Cow position:chr12:4866781-4866953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-184
               
               
               Cow position:chr12:30946707-30946894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-199
               
               
               Cow position:chr12:43619248-43619446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):62, 16

               
               
               Conread position:1-204
               
               
               Cow position:chr12:32051474-32051688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 96

               
               
               Conread position:1-204
               
               
               Cow position:chr12:36790848-36790647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 129

               
               
               Conread position:1-218
               
               
               Cow position:chr12:4719911-4720126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:1-218
               
               
               Cow position:chr12:5635489-5635268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-223
               
               
               Cow position:chr12:42181165-42180942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-225
               
               
               Cow position:chr12:31269118-31269349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 168

               
               
               Conread position:1-234
               
               
               Cow position:chr12:23105901-23106138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:2-214
               
               
               Cow position:chr12:9866264-9866052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:3-185
               
               
               Cow position:chr12:36241412-36241238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:3-204
               
               
               Cow position:chr12:4193790-4194003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 181

               
               
               Conread position:3-204
               
               
               Cow position:chr12:6206295-6206501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:3-207
               
               
               Cow position:chr12:15389033-15389241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 131

               
               
               Conread position:3-214
               
               
               Cow position:chr12:1089420-1089214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):60, 19

               
               
               Conread position:3-214
               
               
               Cow position:chr12:43974255-43974469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):23, 202

               
               
               Conread position:3-215
               
               
               Cow position:chr12:13643193-13643416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr12:18413533-18413333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr12:21393668-21393891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 143

               
               
               Conread position:3-216
               
               
               Cow position:chr12:25193012-25193221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:3-218
               
               
               Cow position:chr12:10942249-10942475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):23, 203

               
               
               Conread position:3-219
               
               
               Cow position:chr12:25823265-25823045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):18, 108

               
               
               Conread position:3-220
               
               
               Cow position:chr12:25456370-25456606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 226

               
               
               Conread position:3-220
               
               
               Cow position:chr12:25989245-25989031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:3-222
               
               
               Cow position:chr12:40200663-40200879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:3-223
               
               
               Cow position:chr12:43474722-43474946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:3-224
               
               
               Cow position:chr12:27894809-27894581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:3-226
               
               
               Cow position:chr12:27385452-27385674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):23, 61

               
               
               Conread position:4-131
               
               
               Cow position:chr12:7920205-7920338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 125

               
               
               Conread position:4-160
               
               
               Cow position:chr12:41159553-41159714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-161
               
               
               Cow position:chr12:7457580-7457415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-167
               
               
               Cow position:chr12:21389840-21390005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:4-171
               
               
               Cow position:chr12:42254631-42254804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 8

               
               
               Conread position:4-185
               
               
               Cow position:chr12:10834161-10833983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-185
               
               
               Cow position:chr12:47267342-47267159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 110

               
               
               Conread position:4-192
               
               
               Cow position:chr12:11587737-11587925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 123

               
               
               Conread position:4-192
               
               
               Cow position:chr12:37255983-37256174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:4-192
               
               
               Cow position:chr12:43854857-43855046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):18, 117

               
               
               Conread position:4-199
               
               
               Cow position:chr12:37008740-37008547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 114

               
               
               Conread position:4-208
               
               
               Cow position:chr12:10895584-10895384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-214
               
               
               Cow position:chr12:23916809-23917017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):17, 123

               
               
               Conread position:4-214
               
               
               Cow position:chr12:45002104-45001896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):22, 97

               
               
               Conread position:4-216
               
               
               Cow position:chr12:1952836-1952625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):17, 24

               
               
               Conread position:4-219
               
               
               Cow position:chr12:42749403-42749625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):32, 213

               
               
               Conread position:4-220
               
               
               Cow position:chr12:15495867-15496078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 139

               
               
               Conread position:4-223
               
               
               Cow position:chr12:21780125-21780352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:4-225
               
               
               Cow position:chr12:26868844-26868630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):62, 35

               
               
               Conread position:5-192
               
               
               Cow position:chr12:33851325-33851512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 113

               
               
               Conread position:5-201
               
               
               Cow position:chr12:41776062-41776260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:5-207
               
               
               Cow position:chr12:18938836-18939046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:5-215
               
               
               Cow position:chr12:24437671-24437455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 20

               
               
               Conread position:6-170
               
               
               Cow position:chr12:11106610-11106444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:6-206
               
               
               Cow position:chr12:24397194-24396995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:6-220
               
               
               Cow position:chr12:7110166-7110392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):7, 217

               
               
               Conread position:6-220
               
               
               Cow position:chr12:17479073-17478852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 8

               
               
               Conread position:6-221
               
               
               Cow position:chr12:29966070-29966291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:6-227
               
               
               Cow position:chr12:31602851-31602631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):59, 120

               
               
               Conread position:6-227
               
               
               Cow position:chr12:35652893-35652674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):100, 8

               
               
               Conread position:8-198
               
               
               Cow position:chr12:31841538-31841732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:8-212
               
               
               Cow position:chr12:40158053-40157851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:8-217
               
               
               Cow position:chr12:43788995-43789208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:8-220
               
               
               Cow position:chr12:18103640-18103432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:9-214
               
               
               Cow position:chr12:30937045-30936839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):27, 93

               
               
               Conread position:10-204
               
               
               Cow position:chr12:9465216-9465014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-204
               
               
               Cow position:chr12:34333079-34333283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:10-204
               
               
               Cow position:chr12:38774274-38774077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:10-204
               
               
               Cow position:chr12:42966969-42967163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):16, 93

               
               
               Conread position:10-222
               
               
               Cow position:chr12:20479362-20479160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):57, 14

               
               
               Conread position:10-227
               
               
               Cow position:chr12:19258249-19258468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 19

               
               
               Conread position:12-203
               
               
               Cow position:chr12:15050645-15050458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:12-203
               
               
               Cow position:chr12:32808633-32808450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 24

               
               
               Conread position:12-221
               
               
               Cow position:chr12:20356835-20356626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):12, 156

               
               
               Conread position:13-186
               
               
               Cow position:chr12:18561512-18561688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:16-200
               
               
               Cow position:chr12:20355197-20355388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:16-219
               
               
               Cow position:chr12:27176622-27176818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-219
               
               
               Cow position:chr12:27192382-27192186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:18-220
               
               
               Cow position:chr12:43782992-43782790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 135

               
               
               Conread position:19-181
               
               
               Cow position:chr12:12532507-12532346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:19-199
               
               
               Cow position:chr12:46144037-46144216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 61

               
               
               Conread position:19-204
               
               
               Cow position:chr12:3579469-3579650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:19-204
               
               
               Cow position:chr12:4596448-4596640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):50, 181

               
               
               Conread position:19-212
               
               
               Cow position:chr12:14222965-14223159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 108

               
               
               Conread position:19-212
               
               
               Cow position:chr12:16493373-16493180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:19-214
               
               
               Cow position:chr12:4954811-4954999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:19-214
               
               
               Cow position:chr12:26749968-26749774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):46, 149

               
               
               Conread position:19-216
               
               
               Cow position:chr12:42951704-42951513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 110

               
               
               Conread position:19-218
               
               
               Cow position:chr12:35241121-35240925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):46, 80

               
               
               Conread position:19-220
               
               
               Cow position:chr12:38126540-38126336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):29, 33

               
               
               Conread position:19-221
               
               
               Cow position:chr12:11857659-11857450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-223
               
               
               Cow position:chr12:7539799-7539597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):181, 57

               
               
               Conread position:19-223
               
               
               Cow position:chr12:37696409-37696203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 115

               
               
               Conread position:19-223
               
               
               Cow position:chr12:39150068-39149862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-223
               
               
               Cow position:chr12:39339695-39339898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:19-225
               
               
               Cow position:chr12:22047904-22048110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:163
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):12, 180

               
               
               Conread position:22-183
               
               
               Cow position:chr12:43351921-43352084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:22-201
               
               
               Cow position:chr12:19272701-19272524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:22-223
               
               
               Cow position:chr12:13995811-13995607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:24-203
               
               
               Cow position:chr12:35771032-35770858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:24-219
               
               
               Cow position:chr12:11230224-11230417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:24-219
               
               
               Cow position:chr12:11583698-11583905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 153

               
               
               Conread position:24-219
               
               
               Cow position:chr12:25343770-25343963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 172

               
               
               Conread position:24-219
               
               
               Cow position:chr12:27718551-27718749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):42, 127

               
               
               Conread position:24-222
               
               
               Cow position:chr12:25280513-25280317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 85

               
               
               Conread position:25-192
               
               
               Cow position:chr12:10593755-10593920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):43, 137

               
               
               Conread position:25-192
               
               
               Cow position:chr12:25814143-25814313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr12:26147180-26147012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:25-199
               
               
               Cow position:chr12:29880159-29879983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-200
               
               
               Cow position:chr12:15122316-15122489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:25-204
               
               
               Cow position:chr12:6242189-6242007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:25-204
               
               
               Cow position:chr12:10827775-10827954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:25-205
               
               
               Cow position:chr12:38552184-38552362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:25-207
               
               
               Cow position:chr12:15060468-15060285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:25-208
               
               
               Cow position:chr12:3057077-3057259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:25-208
               
               
               Cow position:chr12:41218680-41218496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 22

               
               
               Conread position:25-210
               
               
               Cow position:chr12:22515742-22515563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:25-212
               
               
               Cow position:chr12:1443613-1443428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:25-212
               
               
               Cow position:chr12:12637193-12637008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 56

               
               
               Conread position:25-212
               
               
               Cow position:chr12:29057379-29057565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:25-213
               
               
               Cow position:chr12:29899433-29899246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 164

               
               
               Conread position:25-213
               
               
               Cow position:chr12:31948105-31948289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:25-214
               
               
               Cow position:chr12:1998811-1998619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr12:16056868-16056677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr12:30042715-30042907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr12:43427812-43427620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr12:15103263-15103454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 172

               
               
               Conread position:25-216
               
               
               Cow position:chr12:23446710-23446895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:25-216
               
               
               Cow position:chr12:24152328-24152523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:25-217
               
               
               Cow position:chr12:9129899-9130084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:25-218
               
               
               Cow position:chr12:6188124-6187928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 175

               
               
               Conread position:25-218
               
               
               Cow position:chr12:13911591-13911394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:25-218
               
               
               Cow position:chr12:22323284-22323086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):41, 191

               
               
               Conread position:25-219
               
               
               Cow position:chr12:6958209-6958401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:25-219
               
               
               Cow position:chr12:31237971-31237775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:25-219
               
               
               Cow position:chr12:37480845-37480659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr12:4182297-4182107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr12:7884691-7884496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:25-220
               
               
               Cow position:chr12:27563387-27563194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:25-220
               
               
               Cow position:chr12:35368632-35368827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:25-221
               
               
               Cow position:chr12:13988359-13988558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 189

               
               
               Conread position:25-222
               
               
               Cow position:chr12:26357381-26357180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr12:40910299-40910097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:25-225
               
               
               Cow position:chr12:35310695-35310493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-225
               
               
               Cow position:chr12:35469457-35469262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:25-225
               
               
               Cow position:chr12:44542256-44542454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):45, 87

               
               
               Conread position:26-226
               
               
               Cow position:chr12:3473007-3472804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 189

               
               
               Conread position:27-184
               
               
               Cow position:chr12:43961488-43961650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr12:41221016-41220864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-186
               
               
               Cow position:chr12:5459242-5459402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-186
               
               
               Cow position:chr12:42879687-42879849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:28-200
               
               
               Cow position:chr12:987140-987327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr12:13587274-13587448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr12:12198919-12198741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr12:19261188-19261363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:28-208
               
               
               Cow position:chr12:33976192-33976375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr12:6121589-6121775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 142

               
               
               Conread position:28-215
               
               
               Cow position:chr12:26356718-26356528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr12:17490208-17490390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr12:14396792-14396612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:28-217
               
               
               Cow position:chr12:14986742-14986928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 71

               
               
               Conread position:28-218
               
               
               Cow position:chr12:6241312-6241507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr12:34029134-34028942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:28-219
               
               
               Cow position:chr12:42924120-42923925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-220
               
               
               Cow position:chr12:12165644-12165839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr12:41801920-41802114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:28-223
               
               
               Cow position:chr12:9766884-9766698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:28-223
               
               
               Cow position:chr12:18123662-18123849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 92

               
               
               Conread position:28-223
               
               
               Cow position:chr12:20207829-20208026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 182

               
               
               Conread position:28-223
               
               
               Cow position:chr12:29675149-29674952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr12:30590760-30590956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:28-223
               
               
               Cow position:chr12:30803988-30803791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr12:33495226-33495423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:28-223
               
               
               Cow position:chr12:33625413-33625213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr12:38679042-38679233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-224
               
               
               Cow position:chr12:42434747-42434547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-236
               
               
               Cow position:chr12:22752618-22752829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):35, 187

               
               
               Conread position:29-181
               
               
               Cow position:chr12:9514355-9514513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-191
               
               
               Cow position:chr12:48415522-48415365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:29-207
               
               
               Cow position:chr12:8943230-8943043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:30-214
               
               
               Cow position:chr12:3526395-3526582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:31-223
               
               
               Cow position:chr12:45782222-45782408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:32-214
               
               
               Cow position:chr12:8842301-8842116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:32-215
               
               
               Cow position:chr12:9710211-9710025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-219
               
               
               Cow position:chr12:41684504-41684686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:32-223
               
               
               Cow position:chr12:9065552-9065748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr12:34877830-34878005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 166

               
               
               Conread position:35-204
               
               
               Cow position:chr12:42561901-42562065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 75

               
               
               Conread position:35-213
               
               
               Cow position:chr12:46064862-46065040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:35-224
               
               
               Cow position:chr12:9482305-9482113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:36-185
               
               
               Cow position:chr12:42944135-42944286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr12:31925853-31926023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr12:38032139-38031965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:36-215
               
               
               Cow position:chr12:37123651-37123832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 69

               
               
               Conread position:36-218
               
               
               Cow position:chr12:3994932-3995114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 162

               
               
               Conread position:36-218
               
               
               Cow position:chr12:26782872-26783057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-221
               
               
               Cow position:chr12:29731315-29731495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:36-222
               
               
               Cow position:chr12:9866763-9866574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-225
               
               
               Cow position:chr12:21315015-21315209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-225
               
               
               Cow position:chr12:22485807-22486001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 171

               
               
               Conread position:36-230
               
               
               Cow position:chr12:42160558-42160362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:37-219
               
               
               Cow position:chr12:11272825-11272645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 45

               
               
               Conread position:37-220
               
               
               Cow position:chr12:23714676-23714854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):5, 80

               
               
               Conread position:37-221
               
               
               Cow position:chr12:46122664-46122852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-230
               
               
               Cow position:chr12:12166451-12166254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:38-178
               
               
               Cow position:chr12:17744861-17744722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):28, 74

               
               
               Conread position:39-213
               
               
               Cow position:chr12:20404152-20404328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-219
               
               
               Cow position:chr12:38155067-38154885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-223
               
               
               Cow position:chr12:3454698-3454884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):26, 128

               
               
               Conread position:40-201
               
               
               Cow position:chr12:16107404-16107567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 159

               
               
               Conread position:40-203
               
               
               Cow position:chr12:24532620-24532455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:40-203
               
               
               Cow position:chr12:41420861-41420692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-214
               
               
               Cow position:chr12:28699775-28699604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 78

               
               
               Conread position:40-216
               
               
               Cow position:chr12:35136923-35137102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-217
               
               
               Cow position:chr12:6685323-6685142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:40-221
               
               
               Cow position:chr12:12699636-12699457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):26, 164

               
               
               Conread position:40-233
               
               
               Cow position:chr12:40043016-40043202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:40-236
               
               
               Cow position:chr12:36118970-36119167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):26, 171

               
               
               Conread position:41-218
               
               
               Cow position:chr12:44861254-44861074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:42-204
               
               
               Cow position:chr12:2835410-2835573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 44

               
               
               Conread position:45-197
               
               
               Cow position:chr12:29289797-29289948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:45-222
               
               
               Cow position:chr12:29195305-29195481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 85

               
               
               Conread position:50-207
               
               
               Cow position:chr12:28010658-28010501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 61

               
               
               Conread position:50-214
               
               
               Cow position:chr12:27663978-27663814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):19, 139

               
               
               Conread position:50-214
               
               
               Cow position:chr12:44892222-44892387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:50-215
               
               
               Cow position:chr12:38002139-38002317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:50-219
               
               
               Cow position:chr12:7887950-7888117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 152

               
               
               Conread position:50-220
               
               
               Cow position:chr12:37718756-37718581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:50-220
               
               
               Cow position:chr12:37742313-37742488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:52-218
               
               
               Cow position:chr12:39738282-39738117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):13, 35

               
               
               Conread position:55-237
               
               
               Cow position:chr12:14360662-14360843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 91

               
               
               Conread position:57-236
               
               
               Cow position:chr12:42350465-42350292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:58-223
               
               
               Cow position:chr12:5344106-5343941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 112

               
               
               Conread position:62-186
               
               
               Cow position:chr12:41317084-41316960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-187
               
               
               Cow position:chr12:31276633-31276763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr12:37945919-37945781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr12:10456167-10456312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr12:25299388-25299530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr12:39320417-39320559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:62-211
               
               
               Cow position:chr12:6426924-6427074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr12:26670092-26670243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr12:8481814-8481667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr12:9055390-9055237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr12:27421482-27421636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr12:38343579-38343733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr12:41989656-41989500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:62-222
               
               
               Cow position:chr12:42575622-42575465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):91, 101

               
               
               Conread position:62-223
               
               
               Cow position:chr12:16386428-16386263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):120, 59

               
               
               Conread position:62-224
               
               
               Cow position:chr12:22888198-22888035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:62-229
               
               
               Cow position:chr12:18576108-18575945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:62-231
               
               
               Cow position:chr12:37420477-37420304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:63-213
               
               
               Cow position:chr12:45207470-45207620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-219
               
               
               Cow position:chr12:11659951-11660106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:63-220
               
               
               Cow position:chr12:43930779-43930935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:63-221
               
               
               Cow position:chr12:583480-583319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:63-223
               
               
               Cow position:chr12:5246940-5247100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):102, 49

               
               
               Conread position:63-223
               
               
               Cow position:chr12:17254172-17254325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:64-186
               
               
               Cow position:chr12:23939249-23939369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:65-216
               
               
               Cow position:chr12:4093740-4093589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-225
               
               
               Cow position:chr12:6719419-6719578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:66-203
               
               
               Cow position:chr12:17331900-17332041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:66-217
               
               
               Cow position:chr12:39282672-39282522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:69-220
               
               
               Cow position:chr12:44576273-44576427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):56, 76

               
               
               Conread position:75-204
               
               
               Cow position:chr12:24482286-24482415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-211
               
               
               Cow position:chr12:35779881-35779746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:75-220
               
               
               Cow position:chr12:11167908-11168048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:80-203
               
               
               Cow position:chr12:4109090-4109213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-221
               
               
               Cow position:chr12:15938223-15938084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):121, 83

               
               
               Conread position:81-200
               
               
               Cow position:chr12:5657979-5657860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-213
               
               
               Cow position:chr12:11676382-11676513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-192
               
               
               Cow position:chr12:8143764-8143657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-217
               
               
               Cow position:chr12:29947658-29947531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:85-217
               
               
               Cow position:chr12:45135958-45135826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-218
               
               
               Cow position:chr12:7086230-7086363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-220
               
               
               Cow position:chr12:10491570-10491694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:88-218
               
               
               Cow position:chr12:6107123-6106991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:88-223
               
               
               Cow position:chr12:17929029-17928894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:91-199
               
               
               Cow position:chr12:35685115-35685008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:96-207
               
               
               Cow position:chr12:23470566-23470456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:99-218
               
               
               Cow position:chr12:7514938-7515057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:105-221
               
               
               Cow position:chr12:31711813-31711695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):100, 91

               
               
               Conread position:109-220
               
               
               Cow position:chr12:37701604-37701714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:117-223
               
               
               Cow position:chr12:41364819-41364710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1-187
               
               
               Cow position:chr13:26369506-26369316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:1-199
               
               
               Cow position:chr13:6974144-6973947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 96

               
               
               Conread position:1-199
               
               
               Cow position:chr13:52055609-52055807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:1-208
               
               
               Cow position:chr13:16908200-16907987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr13:5279210-5279438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1-216
               
               
               Cow position:chr13:25926773-25926554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 127

               
               
               Conread position:1-217
               
               
               Cow position:chr13:9124907-9124695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-218
               
               
               Cow position:chr13:28071854-28071642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:1-218
               
               
               Cow position:chr13:37592963-37593177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 166

               
               
               Conread position:1-219
               
               
               Cow position:chr13:12875992-12876211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:1-222
               
               
               Cow position:chr13:28439392-28439164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:1-223
               
               
               Cow position:chr13:28605409-28605635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1-224
               
               
               Cow position:chr13:20879843-20880064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):65, 111

               
               
               Conread position:1-237
               
               
               Cow position:chr13:20137806-20137568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:2-184
               
               
               Cow position:chr13:37521764-37521949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:2-186
               
               
               Cow position:chr13:48597890-48597707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 125

               
               
               Conread position:2-192
               
               
               Cow position:chr13:6926499-6926304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:2-199
               
               
               Cow position:chr13:15621793-15621594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):13, 135

               
               
               Conread position:2-199
               
               
               Cow position:chr13:15991247-15991446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 128

               
               
               Conread position:2-200
               
               
               Cow position:chr13:18166714-18166516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:2-229
               
               
               Cow position:chr13:17974983-17975205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):63, 115

               
               
               Conread position:3-185
               
               
               Cow position:chr13:19174708-19174896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr13:6442125-6442318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:3-195
               
               
               Cow position:chr13:26291294-26291099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 145

               
               
               Conread position:3-200
               
               
               Cow position:chr13:19223632-19223435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-204
               
               
               Cow position:chr13:19033541-19033335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):28, 107

               
               
               Conread position:3-204
               
               
               Cow position:chr13:34873574-34873364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr13:49824008-49823804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 36

               
               
               Conread position:3-205
               
               
               Cow position:chr13:49356064-49356270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:3-211
               
               
               Cow position:chr13:4790132-4790349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:3-212
               
               
               Cow position:chr13:20042280-20042490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:3-212
               
               
               Cow position:chr13:24094332-24094544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:3-213
               
               
               Cow position:chr13:25941278-25941490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:3-214
               
               
               Cow position:chr13:55081127-55080907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:3-215
               
               
               Cow position:chr13:41157390-41157166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr13:28536337-28536554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):21, 210

               
               
               Conread position:3-218
               
               
               Cow position:chr13:50457843-50457619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 204

               
               
               Conread position:3-218
               
               
               Cow position:chr13:51015194-51015419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr13:45593902-45593686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 50

               
               
               Conread position:3-223
               
               
               Cow position:chr13:17822970-17823188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):18, 118

               
               
               Conread position:3-223
               
               
               Cow position:chr13:47675950-47676175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:3-224
               
               
               Cow position:chr13:27550724-27550491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr13:46516046-46515818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):23, 174

               
               
               Conread position:3-227
               
               
               Cow position:chr13:10279900-10279682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-233
               
               
               Cow position:chr13:56034875-56035107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:4-185
               
               
               Cow position:chr13:56958952-56958776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:4-196
               
               
               Cow position:chr13:37751083-37751282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:4-199
               
               
               Cow position:chr13:43787853-43788064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:4-201
               
               
               Cow position:chr13:10989090-10989290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:4-203
               
               
               Cow position:chr13:62008091-62007888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:4-204
               
               
               Cow position:chr13:6486267-6486474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:4-204
               
               
               Cow position:chr13:20579892-20579698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:4-204
               
               
               Cow position:chr13:22122690-22122489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:4-204
               
               
               Cow position:chr13:50646651-50646847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 124

               
               
               Conread position:4-204
               
               
               Cow position:chr13:60509142-60509345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:4-206
               
               
               Cow position:chr13:10522918-10522717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:4-206
               
               
               Cow position:chr13:43839692-43839908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 205

               
               
               Conread position:4-207
               
               
               Cow position:chr13:42672445-42672653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):22, 7

               
               
               Conread position:4-208
               
               
               Cow position:chr13:6663775-6663979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:4-213
               
               
               Cow position:chr13:46347115-46346902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 197

               
               
               Conread position:4-213
               
               
               Cow position:chr13:54236787-54236581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):19, 63

               
               
               Conread position:4-214
               
               
               Cow position:chr13:37985760-37985978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-214
               
               
               Cow position:chr13:43595125-43595337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:4-216
               
               
               Cow position:chr13:14576195-14575983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):11, 113

               
               
               Conread position:4-216
               
               
               Cow position:chr13:53865620-53865403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 167

               
               
               Conread position:4-219
               
               
               Cow position:chr13:1363672-1363451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:4-219
               
               
               Cow position:chr13:52640970-52641183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:4-223
               
               
               Cow position:chr13:13796827-13797058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:176
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-223
               
               
               Cow position:chr13:17057864-17058094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:4-223
               
               
               Cow position:chr13:46349924-46350147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:4-224
               
               
               Cow position:chr13:46111949-46111729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):18, 49

               
               
               Conread position:4-225
               
               
               Cow position:chr13:15997018-15996795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:4-226
               
               
               Cow position:chr13:20088731-20088961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 197

               
               
               Conread position:4-232
               
               
               Cow position:chr13:34728863-34729092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:4-237
               
               
               Cow position:chr13:49796007-49795787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:5-215
               
               
               Cow position:chr13:37069324-37069111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):8, 200

               
               
               Conread position:5-218
               
               
               Cow position:chr13:26959822-26960031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:5-222
               
               
               Cow position:chr13:15083642-15083426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 96

               
               
               Conread position:5-222
               
               
               Cow position:chr13:50768579-50768356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:171
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):15, 213

               
               
               Conread position:5-223
               
               
               Cow position:chr13:21127358-21127579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:6-191
               
               
               Cow position:chr13:11260250-11260070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:6-199
               
               
               Cow position:chr13:9900136-9899931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 74

               
               
               Conread position:6-201
               
               
               Cow position:chr13:8362766-8362964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):32, 19

               
               
               Conread position:6-204
               
               
               Cow position:chr13:620271-620468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):19, 75

               
               
               Conread position:6-212
               
               
               Cow position:chr13:30315485-30315273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:6-223
               
               
               Cow position:chr13:17813449-17813234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 130

               
               
               Conread position:6-225
               
               
               Cow position:chr13:40491195-40490976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:6-231
               
               
               Cow position:chr13:44003683-44003454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:7-203
               
               
               Cow position:chr13:43576990-43576792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):19, 192

               
               
               Conread position:7-218
               
               
               Cow position:chr13:369146-369359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:8-185
               
               
               Cow position:chr13:8667595-8667414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:8-216
               
               
               Cow position:chr13:55765200-55765408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 90

               
               
               Conread position:10-199
               
               
               Cow position:chr13:54627466-54627266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-204
               
               
               Cow position:chr13:584896-585094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:10-204
               
               
               Cow position:chr13:1155726-1155925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 171

               
               
               Conread position:10-204
               
               
               Cow position:chr13:47243577-47243773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 109

               
               
               Conread position:10-204
               
               
               Cow position:chr13:52010862-52011066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:10-225
               
               
               Cow position:chr13:18995100-18994881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:11-192
               
               
               Cow position:chr13:26100360-26100180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 54

               
               
               Conread position:11-219
               
               
               Cow position:chr13:12923851-12923638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):10, 138

               
               
               Conread position:11-223
               
               
               Cow position:chr13:52464715-52464502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:12-205
               
               
               Cow position:chr13:44278324-44278125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):11, 172

               
               
               Conread position:13-214
               
               
               Cow position:chr13:42302065-42302270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 79

               
               
               Conread position:14-186
               
               
               Cow position:chr13:9492738-9492574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:14-220
               
               
               Cow position:chr13:20578846-20578638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 5

               
               
               Conread position:14-225
               
               
               Cow position:chr13:13781147-13780939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:14-225
               
               
               Cow position:chr13:21024955-21024741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:16-201
               
               
               Cow position:chr13:20378355-20378532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-216
               
               
               Cow position:chr13:23805046-23805250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 186

               
               
               Conread position:16-220
               
               
               Cow position:chr13:17135248-17135457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:18-218
               
               
               Cow position:chr13:24107584-24107778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 99

               
               
               Conread position:19-183
               
               
               Cow position:chr13:19778890-19779054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:19-185
               
               
               Cow position:chr13:14035032-14035200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-186
               
               
               Cow position:chr13:18615347-18615169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-189
               
               
               Cow position:chr13:16834567-16834741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr13:54128633-54128815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:147
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):44, 76

               
               
               Conread position:19-207
               
               
               Cow position:chr13:8637661-8637471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-211
               
               
               Cow position:chr13:25978230-25978420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):72, 46

               
               
               Conread position:19-211
               
               
               Cow position:chr13:28695823-28695631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):34, 81

               
               
               Conread position:19-220
               
               
               Cow position:chr13:17498179-17497984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:19-220
               
               
               Cow position:chr13:32017549-32017751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 193

               
               
               Conread position:19-220
               
               
               Cow position:chr13:41190068-41189866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 192

               
               
               Conread position:19-221
               
               
               Cow position:chr13:21866670-21866868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:19-233
               
               
               Cow position:chr13:5263318-5263524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:20-204
               
               
               Cow position:chr13:20520276-20520090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:21-224
               
               
               Cow position:chr13:37946428-37946629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:22-215
               
               
               Cow position:chr13:17158918-17159112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 174

               
               
               Conread position:22-223
               
               
               Cow position:chr13:13533703-13533900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 67

               
               
               Conread position:22-226
               
               
               Cow position:chr13:21170485-21170285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):45, 10

               
               
               Conread position:24-199
               
               
               Cow position:chr13:14940759-14940582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-204
               
               
               Cow position:chr13:17624280-17624097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:24-207
               
               
               Cow position:chr13:16163540-16163366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:24-217
               
               
               Cow position:chr13:5910938-5911124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 59

               
               
               Conread position:24-217
               
               
               Cow position:chr13:33256457-33256267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:24-226
               
               
               Cow position:chr13:1339183-1339386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):42, 165

               
               
               Conread position:25-176
               
               
               Cow position:chr13:1037596-1037445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-183
               
               
               Cow position:chr13:20795252-20795407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:25-186
               
               
               Cow position:chr13:52027180-52027338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:25-192
               
               
               Cow position:chr13:20261373-20261542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-194
               
               
               Cow position:chr13:50715107-50714936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:25-198
               
               
               Cow position:chr13:24215717-24215891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:25-199
               
               
               Cow position:chr13:14411852-14411676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-199
               
               
               Cow position:chr13:25520958-25521139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-203
               
               
               Cow position:chr13:19180468-19180647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr13:12768962-12769143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr13:16476814-16476634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-204
               
               
               Cow position:chr13:26093573-26093392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):40, 142

               
               
               Conread position:25-204
               
               
               Cow position:chr13:34261188-34261016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:25-207
               
               
               Cow position:chr13:13775286-13775476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-207
               
               
               Cow position:chr13:28552545-28552363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:25-207
               
               
               Cow position:chr13:42113976-42113792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-213
               
               
               Cow position:chr13:9707792-9707975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:25-213
               
               
               Cow position:chr13:41115799-41115611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:25-214
               
               
               Cow position:chr13:10220918-10220725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr13:24230171-24229983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 157

               
               
               Conread position:25-215
               
               
               Cow position:chr13:34532975-34533157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:25-215
               
               
               Cow position:chr13:37517220-37517419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:25-216
               
               
               Cow position:chr13:3153707-3153517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-216
               
               
               Cow position:chr13:20360236-20360046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 174

               
               
               Conread position:25-217
               
               
               Cow position:chr13:3149474-3149664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:25-218
               
               
               Cow position:chr13:4417068-4416872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:25-218
               
               
               Cow position:chr13:9846505-9846698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:25-218
               
               
               Cow position:chr13:53357790-53357595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-219
               
               
               Cow position:chr13:20156136-20155941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 173

               
               
               Conread position:25-219
               
               
               Cow position:chr13:23685042-23685238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr13:26316929-26317126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr13:45352988-45352791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-222
               
               
               Cow position:chr13:15993343-15993146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 172

               
               
               Conread position:25-222
               
               
               Cow position:chr13:52894104-52893911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-223
               
               
               Cow position:chr13:6861138-6860933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr13:7076214-7076004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 186

               
               
               Conread position:25-223
               
               
               Cow position:chr13:8537779-8537581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 164

               
               
               Conread position:25-223
               
               
               Cow position:chr13:18999492-18999291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr13:48127065-48126867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:25-224
               
               
               Cow position:chr13:21275816-21275617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):39, 129

               
               
               Conread position:25-238
               
               
               Cow position:chr13:62251887-62252097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:27-204
               
               
               Cow position:chr13:27027947-27028124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:27-204
               
               
               Cow position:chr13:27871728-27871551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 82

               
               
               Conread position:27-220
               
               
               Cow position:chr13:10423476-10423284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:27-224
               
               
               Cow position:chr13:43102937-43102741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 16

               
               
               Conread position:28-180
               
               
               Cow position:chr13:52637255-52637101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr13:26847874-26848031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:28-192
               
               
               Cow position:chr13:2776242-2776076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-192
               
               
               Cow position:chr13:20115202-20115036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-194
               
               
               Cow position:chr13:35557157-35557321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-195
               
               
               Cow position:chr13:17338383-17338214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr13:14351536-14351364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr13:43183203-43183028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr13:4968594-4968772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr13:5175551-5175381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:28-204
               
               
               Cow position:chr13:5277088-5276911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:28-204
               
               
               Cow position:chr13:14544089-14543915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:28-204
               
               
               Cow position:chr13:23399720-23399546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:28-204
               
               
               Cow position:chr13:39376476-39376298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr13:48222594-48222769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 126

               
               
               Conread position:28-207
               
               
               Cow position:chr13:37614242-37614418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:28-212
               
               
               Cow position:chr13:8682410-8682223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr13:11103245-11103436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr13:1791472-1791661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr13:18058296-18058475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:28-214
               
               
               Cow position:chr13:19023894-19024082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr13:37775253-37775435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:28-215
               
               
               Cow position:chr13:19178132-19177937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr13:35730725-35730914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 135

               
               
               Conread position:28-215
               
               
               Cow position:chr13:52477693-52477873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:28-216
               
               
               Cow position:chr13:6616805-6616995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr13:18877160-18876969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr13:54582826-54582643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 21

               
               
               Conread position:28-218
               
               
               Cow position:chr13:2822824-2822632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:28-218
               
               
               Cow position:chr13:12045384-12045580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr13:17845442-17845250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr13:45499183-45499000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:28-219
               
               
               Cow position:chr13:390686-390874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:28-219
               
               
               Cow position:chr13:5447509-5447316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 157

               
               
               Conread position:28-219
               
               
               Cow position:chr13:6189646-6189834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-220
               
               
               Cow position:chr13:7059416-7059223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:28-220
               
               
               Cow position:chr13:14878997-14879194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr13:19279049-19278863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:28-221
               
               
               Cow position:chr13:21288131-21288324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:28-222
               
               
               Cow position:chr13:22729449-22729641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):37, 7

               
               
               Conread position:28-223
               
               
               Cow position:chr13:10408911-10408712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr13:10511747-10511946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr13:10924967-10925163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:28-223
               
               
               Cow position:chr13:16203623-16203424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr13:17223278-17223083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:28-223
               
               
               Cow position:chr13:25579236-25579430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 150

               
               
               Conread position:28-223
               
               
               Cow position:chr13:53850778-53850579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-226
               
               
               Cow position:chr13:1642032-1642233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:28-227
               
               
               Cow position:chr13:6930092-6929891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 185

               
               
               Conread position:28-230
               
               
               Cow position:chr13:40541151-40541354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):36, 190

               
               
               Conread position:28-232
               
               
               Cow position:chr13:11933648-11933851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 174

               
               
               Conread position:28-236
               
               
               Cow position:chr13:14063567-14063770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:29-192
               
               
               Cow position:chr13:13320750-13320589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:29-199
               
               
               Cow position:chr13:42200572-42200405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:29-204
               
               
               Cow position:chr13:6113573-6113750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):34, 165

               
               
               Conread position:29-214
               
               
               Cow position:chr13:15162679-15162866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-214
               
               
               Cow position:chr13:16096527-16096345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 119

               
               
               Conread position:29-214
               
               
               Cow position:chr13:16711302-16711119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:29-216
               
               
               Cow position:chr13:53619957-53619771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:29-218
               
               
               Cow position:chr13:40483025-40483215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 67

               
               
               Conread position:29-219
               
               
               Cow position:chr13:43811893-43811696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 175

               
               
               Conread position:29-220
               
               
               Cow position:chr13:33518003-33518197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:29-226
               
               
               Cow position:chr13:7716733-7716935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:29-226
               
               
               Cow position:chr13:52459527-52459714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 106

               
               
               Conread position:32-200
               
               
               Cow position:chr13:6972333-6972164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):32, 124

               
               
               Conread position:32-204
               
               
               Cow position:chr13:7038286-7038113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:32-214
               
               
               Cow position:chr13:5825981-5826166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:32-236
               
               
               Cow position:chr13:17979034-17979239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:33-214
               
               
               Cow position:chr13:15041524-15041703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:33-225
               
               
               Cow position:chr13:10986552-10986746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 167

               
               
               Conread position:33-226
               
               
               Cow position:chr13:10055371-10055176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 157

               
               
               Conread position:34-230
               
               
               Cow position:chr13:9551309-9551119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:35-185
               
               
               Cow position:chr13:58149247-58149101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-198
               
               
               Cow position:chr13:54127880-54128045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 52

               
               
               Conread position:35-203
               
               
               Cow position:chr13:28376613-28376781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:35-215
               
               
               Cow position:chr13:26377469-26377651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 61

               
               
               Conread position:35-223
               
               
               Cow position:chr13:11147004-11146814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-223
               
               
               Cow position:chr13:21246762-21246950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:35-223
               
               
               Cow position:chr13:32283075-32282889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 139

               
               
               Conread position:36-199
               
               
               Cow position:chr13:20288284-20288123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:36-201
               
               
               Cow position:chr13:8699791-8699959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:36-204
               
               
               Cow position:chr13:6377653-6377483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr13:14796155-14795986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 156

               
               
               Conread position:36-204
               
               
               Cow position:chr13:24160398-24160229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:36-204
               
               
               Cow position:chr13:29665967-29665797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-212
               
               
               Cow position:chr13:20214385-20214206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-213
               
               
               Cow position:chr13:1347220-1347397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:36-214
               
               
               Cow position:chr13:5659821-5659995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:36-214
               
               
               Cow position:chr13:11700389-11700206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:36-214
               
               
               Cow position:chr13:19588818-19588638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:36-220
               
               
               Cow position:chr13:20537566-20537379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-223
               
               
               Cow position:chr13:23975221-23975403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-224
               
               
               Cow position:chr13:55162158-55161966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:36-226
               
               
               Cow position:chr13:20174688-20174498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):6, 87

               
               
               Conread position:37-185
               
               
               Cow position:chr13:26109948-26109796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-223
               
               
               Cow position:chr13:18894258-18894073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 74

               
               
               Conread position:37-230
               
               
               Cow position:chr13:47651471-47651659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:39-226
               
               
               Cow position:chr13:31398402-31398218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 48

               
               
               Conread position:40-198
               
               
               Cow position:chr13:28587800-28587960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-203
               
               
               Cow position:chr13:16247590-16247426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:40-203
               
               
               Cow position:chr13:46391297-46391137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:40-213
               
               
               Cow position:chr13:17994431-17994601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 60

               
               
               Conread position:40-213
               
               
               Cow position:chr13:20367937-20368111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):24, 158

               
               
               Conread position:40-213
               
               
               Cow position:chr13:48373376-48373544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:40-214
               
               
               Cow position:chr13:53847179-53847349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:40-218
               
               
               Cow position:chr13:2776801-2776624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:40-219
               
               
               Cow position:chr13:17787681-17787861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:40-224
               
               
               Cow position:chr13:2420590-2420405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 158

               
               
               Conread position:40-224
               
               
               Cow position:chr13:21280555-21280742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-199
               
               
               Cow position:chr13:5092453-5092610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:41-199
               
               
               Cow position:chr13:9108734-9108886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 58

               
               
               Conread position:41-216
               
               
               Cow position:chr13:20331156-20330980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 127

               
               
               Conread position:41-218
               
               
               Cow position:chr13:21886736-21886915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:41-218
               
               
               Cow position:chr13:23823093-23823264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 49

               
               
               Conread position:41-224
               
               
               Cow position:chr13:37554932-37555109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:42-214
               
               
               Cow position:chr13:28081662-28081488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 155

               
               
               Conread position:45-218
               
               
               Cow position:chr13:10389998-10390173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 101

               
               
               Conread position:50-185
               
               
               Cow position:chr13:49476010-49475870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-186
               
               
               Cow position:chr13:24591529-24591392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:50-192
               
               
               Cow position:chr13:11439095-11439232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:50-204
               
               
               Cow position:chr13:15869046-15868888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-215
               
               
               Cow position:chr13:50545478-50545314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:50-218
               
               
               Cow position:chr13:2529018-2529183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):13, 56

               
               
               Conread position:51-233
               
               
               Cow position:chr13:20698352-20698535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:52-220
               
               
               Cow position:chr13:8230085-8229918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 60

               
               
               Conread position:54-205
               
               
               Cow position:chr13:19182743-19182890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):9, 58

               
               
               Conread position:56-205
               
               
               Cow position:chr13:16718426-16718576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):9, 140

               
               
               Conread position:56-223
               
               
               Cow position:chr13:21012894-21012726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:58-192
               
               
               Cow position:chr13:15257443-15257575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 67

               
               
               Conread position:60-198
               
               
               Cow position:chr13:24292741-24292874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:61-222
               
               
               Cow position:chr13:24759412-24759582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):60, 159

               
               
               Conread position:62-183
               
               
               Cow position:chr13:24155432-24155311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-184
               
               
               Cow position:chr13:19470621-19470743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr13:18929447-18929324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-188
               
               
               Cow position:chr13:26261870-26261996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-198
               
               
               Cow position:chr13:15114389-15114253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr13:21955147-21955285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr13:22115596-22115459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr13:55007854-55007986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr13:29507535-29507390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr13:57002644-57002502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr13:9906649-9906501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr13:27146742-27146591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr13:9587663-9587813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):140, 101

               
               
               Conread position:62-215
               
               
               Cow position:chr13:1322581-1322431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr13:19222591-19222443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr13:18814662-18814505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr13:22046093-22046238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr13:12416716-12416868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr13:13504349-13504502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr13:20370750-20370900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr13:20854538-20854692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):53, 35

               
               
               Conread position:62-218
               
               
               Cow position:chr13:56019076-56019234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):138, 71

               
               
               Conread position:62-219
               
               
               Cow position:chr13:3387870-3388029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr13:20789599-20789754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr13:19376292-19376133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):126, 149

               
               
               Conread position:62-220
               
               
               Cow position:chr13:55327359-55327200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):137, 13

               
               
               Conread position:62-222
               
               
               Cow position:chr13:9702378-9702218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr13:8423323-8423163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:62-224
               
               
               Cow position:chr13:18127687-18127848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr13:242553-242391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr13:39775566-39775734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-229
               
               
               Cow position:chr13:23680730-23680562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:63-185
               
               
               Cow position:chr13:21070926-21070804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-213
               
               
               Cow position:chr13:23478819-23478674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:63-214
               
               
               Cow position:chr13:48128925-48129078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:63-217
               
               
               Cow position:chr13:12770271-12770425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 134

               
               
               Conread position:63-223
               
               
               Cow position:chr13:57475489-57475656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:63-224
               
               
               Cow position:chr13:27230385-27230535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:64-203
               
               
               Cow position:chr13:43577907-43577769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:64-217
               
               
               Cow position:chr13:52929351-52929200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:67-222
               
               
               Cow position:chr13:11410622-11410471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:68-215
               
               
               Cow position:chr13:34606605-34606459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 66

               
               
               Conread position:72-219
               
               
               Cow position:chr13:9800431-9800286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:75-202
               
               
               Cow position:chr13:30809468-30809591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:75-204
               
               
               Cow position:chr13:1643978-1644110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:75-213
               
               
               Cow position:chr13:30396624-30396490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:75-223
               
               
               Cow position:chr13:8779161-8779020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:80-221
               
               
               Cow position:chr13:18875036-18874895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-204
               
               
               Cow position:chr13:18686764-18686886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:81-223
               
               
               Cow position:chr13:25380847-25380709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:82-216
               
               
               Cow position:chr13:39347327-39347457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:85-221
               
               
               Cow position:chr13:21009727-21009591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 126

               
               
               Conread position:85-229
               
               
               Cow position:chr13:40109887-40109740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:87-207
               
               
               Cow position:chr13:4622210-4622092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:88-204
               
               
               Cow position:chr13:47340222-47340103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:88-204
               
               
               Cow position:chr13:51198705-51198590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:89-224
               
               
               Cow position:chr13:18997290-18997158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:90-201
               
               
               Cow position:chr13:26482889-26482999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:92-220
               
               
               Cow position:chr13:37030241-37030114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:94-224
               
               
               Cow position:chr13:62017748-62017615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:95-219
               
               
               Cow position:chr13:14383965-14383841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:99-223
               
               
               Cow position:chr13:20653977-20654100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:102-220
               
               
               Cow position:chr13:17745138-17745024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:103-217
               
               
               Cow position:chr13:8482038-8481925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr14:7695307-7695118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:1-191
               
               
               Cow position:chr14:19594097-19594286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:1-192
               
               
               Cow position:chr14:20481803-20482004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 47

               
               
               Conread position:1-199
               
               
               Cow position:chr14:5958947-5959152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-199
               
               
               Cow position:chr14:50519141-50519336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 113

               
               
               Conread position:1-215
               
               
               Cow position:chr14:50362834-50362620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 156

               
               
               Conread position:1-240
               
               
               Cow position:chr14:20712652-20712882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 41

               
               
               Conread position:2-224
               
               
               Cow position:chr14:7094018-7094248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):11, 199

               
               
               Conread position:3-191
               
               
               Cow position:chr14:30756885-30756690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-192
               
               
               Cow position:chr14:42419231-42419431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 177

               
               
               Conread position:3-198
               
               
               Cow position:chr14:7127900-7127702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:3-204
               
               
               Cow position:chr14:27364619-27364414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):19, 198

               
               
               Conread position:3-213
               
               
               Cow position:chr14:12081092-12081299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:3-218
               
               
               Cow position:chr14:14812178-14812403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr14:20234151-20234366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 126

               
               
               Conread position:3-218
               
               
               Cow position:chr14:22865828-22866053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 53

               
               
               Conread position:3-218
               
               
               Cow position:chr14:23103959-23104171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 127

               
               
               Conread position:3-218
               
               
               Cow position:chr14:45955323-45955112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:3-219
               
               
               Cow position:chr14:29965061-29964840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 209

               
               
               Conread position:3-219
               
               
               Cow position:chr14:39452251-39452031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr14:10609722-10609498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 168

               
               
               Conread position:3-220
               
               
               Cow position:chr14:45312834-45312620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 105

               
               
               Conread position:3-221
               
               
               Cow position:chr14:26919039-26918814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 193

               
               
               Conread position:3-222
               
               
               Cow position:chr14:25986558-25986334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):20, 202

               
               
               Conread position:3-223
               
               
               Cow position:chr14:35065731-35065502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr14:3949059-3949290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 218

               
               
               Conread position:3-224
               
               
               Cow position:chr14:27338382-27338152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr14:18941244-18941470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 198

               
               
               Conread position:3-225
               
               
               Cow position:chr14:26628481-26628713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):20, 218

               
               
               Conread position:3-226
               
               
               Cow position:chr14:18559019-18559241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 98

               
               
               Conread position:4-185
               
               
               Cow position:chr14:12520263-12520449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 130

               
               
               Conread position:4-198
               
               
               Cow position:chr14:20466971-20466778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 37

               
               
               Conread position:4-201
               
               
               Cow position:chr14:19832356-19832553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:4-204
               
               
               Cow position:chr14:33329001-33328803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 118

               
               
               Conread position:4-212
               
               
               Cow position:chr14:34775711-34775919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 185

               
               
               Conread position:4-212
               
               
               Cow position:chr14:36425370-36425576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):9, 115

               
               
               Conread position:4-214
               
               
               Cow position:chr14:10920529-10920743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-214
               
               
               Cow position:chr14:15428519-15428306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):22, 141

               
               
               Conread position:4-214
               
               
               Cow position:chr14:19851895-19852111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-214
               
               
               Cow position:chr14:28924209-28923990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-215
               
               
               Cow position:chr14:22916256-22916468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 26

               
               
               Conread position:4-216
               
               
               Cow position:chr14:11056692-11056907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:4-220
               
               
               Cow position:chr14:145476-145689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 98

               
               
               Conread position:5-204
               
               
               Cow position:chr14:49817649-49817848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):8, 130

               
               
               Conread position:5-212
               
               
               Cow position:chr14:1715771-1715558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 196

               
               
               Conread position:5-218
               
               
               Cow position:chr14:4481706-4481500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:5-219
               
               
               Cow position:chr14:24748182-24748409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:5-219
               
               
               Cow position:chr14:38747711-38747498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 24

               
               
               Conread position:5-220
               
               
               Cow position:chr14:12244344-12244561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:6-201
               
               
               Cow position:chr14:23419833-23419633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):7, 196

               
               
               Conread position:6-204
               
               
               Cow position:chr14:26825226-26825024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-211
               
               
               Cow position:chr14:48496106-48496319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:6-212
               
               
               Cow position:chr14:44713454-44713243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-217
               
               
               Cow position:chr14:5222256-5222462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:6-218
               
               
               Cow position:chr14:31130336-31130555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):19, 127

               
               
               Conread position:6-219
               
               
               Cow position:chr14:35651750-35651960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):7, 120

               
               
               Conread position:6-220
               
               
               Cow position:chr14:28957925-28957706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:7-234
               
               
               Cow position:chr14:11285616-11285383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 141

               
               
               Conread position:8-219
               
               
               Cow position:chr14:11470116-11470328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):6, 97

               
               
               Conread position:9-217
               
               
               Cow position:chr14:36442984-36443195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):6, 119

               
               
               Conread position:10-220
               
               
               Cow position:chr14:12511866-12512074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:12-207
               
               
               Cow position:chr14:30023170-30023367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-218
               
               
               Cow position:chr14:16344122-16344321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 11

               
               
               Conread position:12-221
               
               
               Cow position:chr14:7271221-7271438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):11, 193

               
               
               Conread position:14-213
               
               
               Cow position:chr14:27999010-27999213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:14-217
               
               
               Cow position:chr14:21357583-21357381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:16-199
               
               
               Cow position:chr14:45052465-45052281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-220
               
               
               Cow position:chr14:38144085-38144291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-223
               
               
               Cow position:chr14:23078770-23078972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:18-217
               
               
               Cow position:chr14:16237491-16237686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 108

               
               
               Conread position:19-185
               
               
               Cow position:chr14:26886722-26886890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-203
               
               
               Cow position:chr14:7581897-7582083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 136

               
               
               Conread position:19-204
               
               
               Cow position:chr14:15211946-15211770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:19-208
               
               
               Cow position:chr14:2794091-2794280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):94, 65

               
               
               Conread position:19-213
               
               
               Cow position:chr14:7480030-7479835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 178

               
               
               Conread position:19-214
               
               
               Cow position:chr14:7198518-7198321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-214
               
               
               Cow position:chr14:16287502-16287311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:19-214
               
               
               Cow position:chr14:22941708-22941914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-217
               
               
               Cow position:chr14:20016687-20016888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-217
               
               
               Cow position:chr14:34613026-34613236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-220
               
               
               Cow position:chr14:33066510-33066717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-220
               
               
               Cow position:chr14:35381610-35381408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):45, 20

               
               
               Conread position:19-224
               
               
               Cow position:chr14:13515972-13516174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:19-226
               
               
               Cow position:chr14:27823452-27823245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):45, 149

               
               
               Conread position:19-233
               
               
               Cow position:chr14:23237650-23237857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:20-208
               
               
               Cow position:chr14:23465031-23465219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 12

               
               
               Conread position:20-211
               
               
               Cow position:chr14:26655116-26655305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:20-216
               
               
               Cow position:chr14:7290818-7290622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):182, 5

               
               
               Conread position:22-220
               
               
               Cow position:chr14:29282772-29282576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:22-225
               
               
               Cow position:chr14:36559209-36559409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:23-220
               
               
               Cow position:chr14:10440944-10440742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 180

               
               
               Conread position:24-204
               
               
               Cow position:chr14:13385383-13385202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:24-218
               
               
               Cow position:chr14:42439894-42440100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 192

               
               
               Conread position:24-219
               
               
               Cow position:chr14:40754232-40754423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:25-126
               
               
               Cow position:chr14:19129520-19129417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-181
               
               
               Cow position:chr14:41191081-41191239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 135

               
               
               Conread position:25-184
               
               
               Cow position:chr14:48744529-48744371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:25-185
               
               
               Cow position:chr14:20513244-20513082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr14:27733616-27733456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-198
               
               
               Cow position:chr14:27330750-27330574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 55

               
               
               Conread position:25-199
               
               
               Cow position:chr14:40347632-40347801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:25-204
               
               
               Cow position:chr14:4227208-4227387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 119

               
               
               Conread position:25-204
               
               
               Cow position:chr14:28378373-28378195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:25-204
               
               
               Cow position:chr14:37436696-37436886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-205
               
               
               Cow position:chr14:5668104-5668286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-207
               
               
               Cow position:chr14:46432084-46431900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-211
               
               
               Cow position:chr14:25979286-25979101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:25-213
               
               
               Cow position:chr14:11079466-11079283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-214
               
               
               Cow position:chr14:26116075-26115886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:25-215
               
               
               Cow position:chr14:6541710-6541901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:25-216
               
               
               Cow position:chr14:40230621-40230811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 102

               
               
               Conread position:25-217
               
               
               Cow position:chr14:30760231-30760042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 72

               
               
               Conread position:25-218
               
               
               Cow position:chr14:2937658-2937464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-218
               
               
               Cow position:chr14:6360410-6360215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-218
               
               
               Cow position:chr14:10937687-10937492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr14:1708642-1708837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-219
               
               
               Cow position:chr14:8083212-8083016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:25-219
               
               
               Cow position:chr14:20245155-20245345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:25-220
               
               
               Cow position:chr14:7316808-7316612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:25-220
               
               
               Cow position:chr14:24785672-24785481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-220
               
               
               Cow position:chr14:30450647-30450451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:25-220
               
               
               Cow position:chr14:49941025-49940832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-221
               
               
               Cow position:chr14:19851012-19851210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:25-221
               
               
               Cow position:chr14:27303672-27303468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 186

               
               
               Conread position:25-221
               
               
               Cow position:chr14:35420750-35420943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:25-223
               
               
               Cow position:chr14:18270375-18270175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:25-225
               
               
               Cow position:chr14:7036343-7036547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-226
               
               
               Cow position:chr14:20914963-20915168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:25-226
               
               
               Cow position:chr14:28465201-28465405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-226
               
               
               Cow position:chr14:41623332-41623141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:25-238
               
               
               Cow position:chr14:11508221-11508439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:26-218
               
               
               Cow position:chr14:10387673-10387480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:27-192
               
               
               Cow position:chr14:3795223-3795056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 25

               
               
               Conread position:28-178
               
               
               Cow position:chr14:42423102-42422950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr14:20035733-20035573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:28-200
               
               
               Cow position:chr14:20010300-20010474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 116

               
               
               Conread position:28-202
               
               
               Cow position:chr14:26222751-26222574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 50

               
               
               Conread position:28-203
               
               
               Cow position:chr14:2975078-2975247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:28-204
               
               
               Cow position:chr14:10706887-10706714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:28-204
               
               
               Cow position:chr14:15518389-15518567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr14:25285009-25284829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 145

               
               
               Conread position:28-204
               
               
               Cow position:chr14:32784104-32784282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr14:39415172-39414994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-207
               
               
               Cow position:chr14:15313572-15313391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr14:11043480-11043668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr14:22202119-22202304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:28-213
               
               
               Cow position:chr14:437461-437645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 137

               
               
               Conread position:28-213
               
               
               Cow position:chr14:8027549-8027739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:28-213
               
               
               Cow position:chr14:24597765-24597954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr14:6965773-6965584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr14:12496496-12496308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 115

               
               
               Conread position:28-214
               
               
               Cow position:chr14:40952282-40952092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:28-215
               
               
               Cow position:chr14:6865011-6864822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:28-215
               
               
               Cow position:chr14:37103221-37103031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr14:6599946-6600129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 53

               
               
               Conread position:28-216
               
               
               Cow position:chr14:44615137-44615328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr14:18485243-18485432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:28-217
               
               
               Cow position:chr14:41809642-41809831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:28-218
               
               
               Cow position:chr14:18412580-18412771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):38, 184

               
               
               Conread position:28-218
               
               
               Cow position:chr14:20010494-20010686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr14:20984349-20984158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 48

               
               
               Conread position:28-220
               
               
               Cow position:chr14:6490688-6490883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr14:20301990-20302185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr14:33546345-33546541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-222
               
               
               Cow position:chr14:4848359-4848172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 137

               
               
               Conread position:28-222
               
               
               Cow position:chr14:27885029-27884833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-222
               
               
               Cow position:chr14:44237712-44237909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 107

               
               
               Conread position:28-223
               
               
               Cow position:chr14:12146469-12146666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 73

               
               
               Conread position:28-223
               
               
               Cow position:chr14:26172383-26172579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 190

               
               
               Conread position:28-223
               
               
               Cow position:chr14:28694705-28694902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:28-223
               
               
               Cow position:chr14:37106614-37106419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:28-224
               
               
               Cow position:chr14:20640618-20640810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:28-225
               
               
               Cow position:chr14:14949202-14949398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 102

               
               
               Conread position:28-238
               
               
               Cow position:chr14:15931887-15931677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 170

               
               
               Conread position:29-200
               
               
               Cow position:chr14:18937140-18937314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-217
               
               
               Cow position:chr14:21592991-21593178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:29-220
               
               
               Cow position:chr14:6899085-6898892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:29-221
               
               
               Cow position:chr14:8949660-8949475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:29-222
               
               
               Cow position:chr14:37243385-37243579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 170

               
               
               Conread position:29-224
               
               
               Cow position:chr14:14104380-14104181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:29-233
               
               
               Cow position:chr14:11981477-11981271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:31-183
               
               
               Cow position:chr14:22230900-22231051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 75

               
               
               Conread position:32-219
               
               
               Cow position:chr14:8590841-8591022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:32-224
               
               
               Cow position:chr14:15877772-15877968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:35-197
               
               
               Cow position:chr14:36151329-36151167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):32, 91

               
               
               Conread position:35-204
               
               
               Cow position:chr14:12036822-12036993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:35-223
               
               
               Cow position:chr14:47894120-47893932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 177

               
               
               Conread position:36-192
               
               
               Cow position:chr14:39422879-39423047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr14:10693251-10693421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr14:28244862-28245032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-208
               
               
               Cow position:chr14:49501003-49501176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:36-209
               
               
               Cow position:chr14:37504518-37504343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-211
               
               
               Cow position:chr14:4282503-4282681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 131

               
               
               Conread position:36-213
               
               
               Cow position:chr14:31342215-31342038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 159

               
               
               Conread position:36-215
               
               
               Cow position:chr14:12342835-12343017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:36-218
               
               
               Cow position:chr14:38719205-38719023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 172

               
               
               Conread position:36-219
               
               
               Cow position:chr14:4047751-4047567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:36-220
               
               
               Cow position:chr14:6234217-6234403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr14:19703538-19703726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-223
               
               
               Cow position:chr14:33457040-33457226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:36-223
               
               
               Cow position:chr14:37151937-37152116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 36

               
               
               Conread position:36-224
               
               
               Cow position:chr14:35498487-35498679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 123

               
               
               Conread position:36-225
               
               
               Cow position:chr14:6151358-6151548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):30, 137

               
               
               Conread position:36-226
               
               
               Cow position:chr14:6159766-6159962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-226
               
               
               Cow position:chr14:22989037-22988851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 88

               
               
               Conread position:37-207
               
               
               Cow position:chr14:19774217-19774382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 69

               
               
               Conread position:38-213
               
               
               Cow position:chr14:26824675-26824851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 29

               
               
               Conread position:38-218
               
               
               Cow position:chr14:15795919-15796098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 160

               
               
               Conread position:39-216
               
               
               Cow position:chr14:24732237-24732055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-217
               
               
               Cow position:chr14:41289249-41289427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):26, 159

               
               
               Conread position:39-223
               
               
               Cow position:chr14:48492797-48492985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 52

               
               
               Conread position:40-198
               
               
               Cow position:chr14:47200125-47200292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-199
               
               
               Cow position:chr14:20483699-20483864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-205
               
               
               Cow position:chr14:14224567-14224404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 144

               
               
               Conread position:40-213
               
               
               Cow position:chr14:21371787-21371956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-213
               
               
               Cow position:chr14:35421083-35421260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:40-214
               
               
               Cow position:chr14:6420612-6420780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-214
               
               
               Cow position:chr14:12072957-12073129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:40-215
               
               
               Cow position:chr14:24744936-24744758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-215
               
               
               Cow position:chr14:37798744-37798922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-216
               
               
               Cow position:chr14:40474564-40474387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:40-218
               
               
               Cow position:chr14:10939862-10940043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-218
               
               
               Cow position:chr14:27355395-27355217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:41-174
               
               
               Cow position:chr14:21530075-21530210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-185
               
               
               Cow position:chr14:11280115-11280258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:41-219
               
               
               Cow position:chr14:24746464-24746276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-226
               
               
               Cow position:chr14:41871589-41871776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-233
               
               
               Cow position:chr14:9052253-9052444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 105

               
               
               Conread position:42-202
               
               
               Cow position:chr14:25912648-25912492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:42-202
               
               
               Cow position:chr14:37966940-37966780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 153

               
               
               Conread position:42-219
               
               
               Cow position:chr14:39097505-39097327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):24, 162

               
               
               Conread position:42-220
               
               
               Cow position:chr14:24922097-24921917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 76

               
               
               Conread position:42-224
               
               
               Cow position:chr14:31228097-31228272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:43-214
               
               
               Cow position:chr14:27919739-27919908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:44-219
               
               
               Cow position:chr14:13839646-13839824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 101

               
               
               Conread position:47-185
               
               
               Cow position:chr14:24543582-24543720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):129, 13

               
               
               Conread position:50-204
               
               
               Cow position:chr14:21305765-21305609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-216
               
               
               Cow position:chr14:21968520-21968684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:50-219
               
               
               Cow position:chr14:5044660-5044497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:50-223
               
               
               Cow position:chr14:28401799-28401624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-224
               
               
               Cow position:chr14:33414231-33414408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:50-225
               
               
               Cow position:chr14:16593371-16593193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 62

               
               
               Conread position:52-230
               
               
               Cow position:chr14:6388900-6389071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:53-217
               
               
               Cow position:chr14:11577054-11576896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:58-226
               
               
               Cow position:chr14:25890076-25889920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:62-203
               
               
               Cow position:chr14:33229425-33229562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr14:37236345-37236204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):125, 104

               
               
               Conread position:62-212
               
               
               Cow position:chr14:3573750-3573601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):54, 135

               
               
               Conread position:62-214
               
               
               Cow position:chr14:7009436-7009588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr14:25516970-25517122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr14:6409343-6409496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr14:11472253-11472407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr14:12071549-12071703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr14:10895716-10895871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:62-219
               
               
               Cow position:chr14:28304810-28304964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr14:12137992-12137836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):143, 100

               
               
               Conread position:62-220
               
               
               Cow position:chr14:29011068-29011225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr14:19988084-19988249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr14:36723385-36723221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:62-226
               
               
               Cow position:chr14:10838835-10838673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):139, 47

               
               
               Conread position:62-226
               
               
               Cow position:chr14:18795207-18795042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):110, 35

               
               
               Conread position:62-226
               
               
               Cow position:chr14:24754931-24754763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:62-227
               
               
               Cow position:chr14:7382913-7383071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):161, 54

               
               
               Conread position:62-227
               
               
               Cow position:chr14:19592433-19592264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 129

               
               
               Conread position:62-229
               
               
               Cow position:chr14:21946367-21946200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):113, 47

               
               
               Conread position:63-193
               
               
               Cow position:chr14:48427048-48426919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:63-208
               
               
               Cow position:chr14:35503334-35503193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):136, 69

               
               
               Conread position:63-214
               
               
               Cow position:chr14:26800273-26800123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:63-219
               
               
               Cow position:chr14:12141940-12142094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:63-225
               
               
               Cow position:chr14:16769891-16770052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:64-213
               
               
               Cow position:chr14:21081807-21081659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:65-223
               
               
               Cow position:chr14:15944691-15944849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):65, 137

               
               
               Conread position:67-194
               
               
               Cow position:chr14:29592742-29592870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:67-225
               
               
               Cow position:chr14:19924058-19924219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:68-185
               
               
               Cow position:chr14:41706451-41706568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-215
               
               
               Cow position:chr14:16490327-16490468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:75-183
               
               
               Cow position:chr14:44649271-44649163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-224
               
               
               Cow position:chr14:7342425-7342281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:75-228
               
               
               Cow position:chr14:14393844-14393697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:77-220
               
               
               Cow position:chr14:18479988-18479845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):125, 32

               
               
               Conread position:80-219
               
               
               Cow position:chr14:13006484-13006347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:80-219
               
               
               Cow position:chr14:38411258-38411126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:81-229
               
               
               Cow position:chr14:48884868-48885018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:82-212
               
               
               Cow position:chr14:1803162-1803294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 72

               
               
               Conread position:82-215
               
               
               Cow position:chr14:28987648-28987516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 115

               
               
               Conread position:85-214
               
               
               Cow position:chr14:41756111-41755983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):122, 108

               
               
               Conread position:85-225
               
               
               Cow position:chr14:49528598-49528456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 33

               
               
               Conread position:89-223
               
               
               Cow position:chr14:45077095-45076961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):116, 21

               
               
               Conread position:90-221
               
               
               Cow position:chr14:18717255-18717131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:91-199
               
               
               Cow position:chr14:14710280-14710388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:93-204
               
               
               Cow position:chr14:27044842-27044954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:93-214
               
               
               Cow position:chr14:23100559-23100439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:93-214
               
               
               Cow position:chr14:24986908-24987032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 105

               
               
               Conread position:93-214
               
               
               Cow position:chr14:42079969-42080091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:94-207
               
               
               Cow position:chr14:28306473-28306364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:95-225
               
               
               Cow position:chr14:25235334-25235464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:97-204
               
               
               Cow position:chr14:18835450-18835559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:98-220
               
               
               Cow position:chr14:36792040-36791920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:99-218
               
               
               Cow position:chr14:13176489-13176607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:102-223
               
               
               Cow position:chr14:17705830-17705709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 115

               
               
               Conread position:103-220
               
               
               Cow position:chr14:7704648-7704530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:105-223
               
               
               Cow position:chr14:34330886-34331006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:107-218
               
               
               Cow position:chr14:2003216-2003107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:107-223
               
               
               Cow position:chr14:40107179-40107294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:1-192
               
               
               Cow position:chr15:4500792-4500593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-199
               
               
               Cow position:chr15:16112487-16112282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 97

               
               
               Conread position:1-201
               
               
               Cow position:chr15:22939238-22939438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:1-207
               
               
               Cow position:chr15:39286322-39286531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:1-217
               
               
               Cow position:chr15:23572603-23572819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:1-218
               
               
               Cow position:chr15:225717-225934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 114

               
               
               Conread position:1-219
               
               
               Cow position:chr15:608231-608010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1-219
               
               
               Cow position:chr15:16928007-16928218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-223
               
               
               Cow position:chr15:34552798-34553027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-235
               
               
               Cow position:chr15:45584816-45584577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:2-195
               
               
               Cow position:chr15:9921684-9921872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:2-198
               
               
               Cow position:chr15:5072001-5072209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:2-198
               
               
               Cow position:chr15:32205069-32205268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 169

               
               
               Conread position:2-224
               
               
               Cow position:chr15:22321232-22321006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 191

               
               
               Conread position:3-180
               
               
               Cow position:chr15:2953045-2953226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:3-193
               
               
               Cow position:chr15:12785517-12785321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 16

               
               
               Conread position:3-201
               
               
               Cow position:chr15:9979189-9978990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:3-201
               
               
               Cow position:chr15:17233282-17233072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr15:40798338-40798531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 22

               
               
               Conread position:3-202
               
               
               Cow position:chr15:19942681-19942483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:3-204
               
               
               Cow position:chr15:37381713-37381512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 106

               
               
               Conread position:3-211
               
               
               Cow position:chr15:40379303-40379089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):23, 207

               
               
               Conread position:3-212
               
               
               Cow position:chr15:7955983-7956208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:3-212
               
               
               Cow position:chr15:38652512-38652726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 80

               
               
               Conread position:3-212
               
               
               Cow position:chr15:42888747-42888959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 197

               
               
               Conread position:3-214
               
               
               Cow position:chr15:5444073-5443853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr15:1857813-1857600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:3-216
               
               
               Cow position:chr15:38837836-38837617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 197

               
               
               Conread position:3-217
               
               
               Cow position:chr15:6227093-6227305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):22, 121

               
               
               Conread position:3-217
               
               
               Cow position:chr15:44401870-44402080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:3-219
               
               
               Cow position:chr15:36435294-36435070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr15:12045448-12045674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):19, 199

               
               
               Conread position:3-223
               
               
               Cow position:chr15:42381017-42380789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):19, 171

               
               
               Conread position:3-223
               
               
               Cow position:chr15:46364861-46364640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:3-229
               
               
               Cow position:chr15:19771221-19770998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:3-232
               
               
               Cow position:chr15:35419505-35419737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):33, 198

               
               
               Conread position:3-233
               
               
               Cow position:chr15:38862182-38861956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:4-174
               
               
               Cow position:chr15:52432426-52432251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:4-184
               
               
               Cow position:chr15:50552447-50552631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:4-190
               
               
               Cow position:chr15:21803573-21803768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-192
               
               
               Cow position:chr15:16667415-16667603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-192
               
               
               Cow position:chr15:32324120-32324313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:4-199
               
               
               Cow position:chr15:36643774-36643957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:4-201
               
               
               Cow position:chr15:39473847-39474049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:4-207
               
               
               Cow position:chr15:794933-795136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 115

               
               
               Conread position:4-211
               
               
               Cow position:chr15:43626557-43626343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 200

               
               
               Conread position:4-213
               
               
               Cow position:chr15:10088405-10088196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 116

               
               
               Conread position:4-214
               
               
               Cow position:chr15:22443900-22444114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-216
               
               
               Cow position:chr15:49274041-49273833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:4-217
               
               
               Cow position:chr15:6168448-6168664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:4-217
               
               
               Cow position:chr15:21821836-21822057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-218
               
               
               Cow position:chr15:5408818-5409023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:4-219
               
               
               Cow position:chr15:19403081-19402873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):136, 21

               
               
               Conread position:4-219
               
               
               Cow position:chr15:21582836-21583062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-219
               
               
               Cow position:chr15:44810153-44809934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 196

               
               
               Conread position:4-222
               
               
               Cow position:chr15:13554191-13553966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:4-222
               
               
               Cow position:chr15:17100622-17100835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:4-222
               
               
               Cow position:chr15:53116579-53116359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:4-223
               
               
               Cow position:chr15:8665512-8665742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):21, 201

               
               
               Conread position:4-223
               
               
               Cow position:chr15:15177398-15177181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:4-223
               
               
               Cow position:chr15:25595446-25595661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:4-223
               
               
               Cow position:chr15:30001776-30001559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):61, 123

               
               
               Conread position:4-225
               
               
               Cow position:chr15:7750830-7751048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 135

               
               
               Conread position:4-225
               
               
               Cow position:chr15:15154382-15154161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-232
               
               
               Cow position:chr15:17853640-17853863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):62, 115

               
               
               Conread position:5-186
               
               
               Cow position:chr15:10245910-10246094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 110

               
               
               Conread position:5-186
               
               
               Cow position:chr15:48095449-48095257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:5-200
               
               
               Cow position:chr15:20370373-20370565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):15, 125

               
               
               Conread position:5-208
               
               
               Cow position:chr15:11564379-11564180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 55

               
               
               Conread position:5-219
               
               
               Cow position:chr15:20422695-20422897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:6-184
               
               
               Cow position:chr15:43606880-43607061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:6-193
               
               
               Cow position:chr15:52482746-52482933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:6-193
               
               
               Cow position:chr15:53164103-53163916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:6-203
               
               
               Cow position:chr15:17124386-17124586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):8, 194

               
               
               Conread position:6-213
               
               
               Cow position:chr15:31857673-31857465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 142

               
               
               Conread position:6-214
               
               
               Cow position:chr15:5717796-5717592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 81

               
               
               Conread position:6-222
               
               
               Cow position:chr15:5626952-5627174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-223
               
               
               Cow position:chr15:39405825-39405607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):7, 45

               
               
               Conread position:6-224
               
               
               Cow position:chr15:20534366-20534588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):9, 193

               
               
               Conread position:6-226
               
               
               Cow position:chr15:22553462-22553678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):5, 20

               
               
               Conread position:7-204
               
               
               Cow position:chr15:44119388-44119585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):56, 150

               
               
               Conread position:8-223
               
               
               Cow position:chr15:2968420-2968200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 194

               
               
               Conread position:9-195
               
               
               Cow position:chr15:6647532-6647342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 119

               
               
               Conread position:10-192
               
               
               Cow position:chr15:12913421-12913604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):10, 126

               
               
               Conread position:10-196
               
               
               Cow position:chr15:38935490-38935295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:10-199
               
               
               Cow position:chr15:41527894-41528079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):10, 115

               
               
               Conread position:10-207
               
               
               Cow position:chr15:26158517-26158721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:10-216
               
               
               Cow position:chr15:4138214-4138008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:10-218
               
               
               Cow position:chr15:43114647-43114848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):55, 16

               
               
               Conread position:10-219
               
               
               Cow position:chr15:53104-52887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-221
               
               
               Cow position:chr15:21893860-21893647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 111

               
               
               Conread position:10-223
               
               
               Cow position:chr15:4333841-4334044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:11-213
               
               
               Cow position:chr15:20566208-20566003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 27

               
               
               Conread position:11-216
               
               
               Cow position:chr15:8444550-8444341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:11-222
               
               
               Cow position:chr15:11320721-11320938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):9, 85

               
               
               Conread position:12-177
               
               
               Cow position:chr15:6102084-6102251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 9

               
               
               Conread position:14-214
               
               
               Cow position:chr15:38883221-38883016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 5

               
               
               Conread position:14-216
               
               
               Cow position:chr15:7811457-7811657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 92

               
               
               Conread position:14-223
               
               
               Cow position:chr15:36605149-36605360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:16-215
               
               
               Cow position:chr15:34284341-34284533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:16-220
               
               
               Cow position:chr15:6083186-6083392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:16-226
               
               
               Cow position:chr15:35642084-35641877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):51, 185

               
               
               Conread position:16-233
               
               
               Cow position:chr15:33693300-33693518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:18-186
               
               
               Cow position:chr15:38386656-38386487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:18-204
               
               
               Cow position:chr15:26618007-26617818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:18-219
               
               
               Cow position:chr15:15147147-15147340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:18-221
               
               
               Cow position:chr15:7478928-7479136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):45, 168

               
               
               Conread position:19-185
               
               
               Cow position:chr15:4485221-4485050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-190
               
               
               Cow position:chr15:33662581-33662408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr15:5158441-5158261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr15:31928829-31929008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:19-198
               
               
               Cow position:chr15:21520218-21520031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:19-202
               
               
               Cow position:chr15:25452077-25451887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 185

               
               
               Conread position:19-204
               
               
               Cow position:chr15:4918999-4919187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr15:6037388-6037562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:19-204
               
               
               Cow position:chr15:24462594-24462405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr15:36793427-36793609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):39, 146

               
               
               Conread position:19-204
               
               
               Cow position:chr15:52792004-52791822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):175, 47

               
               
               Conread position:19-213
               
               
               Cow position:chr15:43633967-43634155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:19-214
               
               
               Cow position:chr15:21943122-21942926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:19-214
               
               
               Cow position:chr15:26896627-26896826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-215
               
               
               Cow position:chr15:2931501-2931697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:19-215
               
               
               Cow position:chr15:44977883-44977686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 177

               
               
               Conread position:19-217
               
               
               Cow position:chr15:19857838-19857641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:19-218
               
               
               Cow position:chr15:49922201-49922006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:19-218
               
               
               Cow position:chr15:53028430-53028233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:19-219
               
               
               Cow position:chr15:5964035-5964245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:19-219
               
               
               Cow position:chr15:8549416-8549628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-219
               
               
               Cow position:chr15:31137399-31137596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-223
               
               
               Cow position:chr15:4248215-4248014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:19-223
               
               
               Cow position:chr15:20856409-20856615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-224
               
               
               Cow position:chr15:11614025-11614233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):29, 33

               
               
               Conread position:20-204
               
               
               Cow position:chr15:25365997-25366182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:20-213
               
               
               Cow position:chr15:21710043-21710234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):44, 5

               
               
               Conread position:20-215
               
               
               Cow position:chr15:25846139-25845941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:20-217
               
               
               Cow position:chr15:3026731-3026933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 120

               
               
               Conread position:20-228
               
               
               Cow position:chr15:16415363-16415153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 150

               
               
               Conread position:22-204
               
               
               Cow position:chr15:17590022-17590207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:24-185
               
               
               Cow position:chr15:16644724-16644886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 122

               
               
               Conread position:24-191
               
               
               Cow position:chr15:38196017-38196181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:24-220
               
               
               Cow position:chr15:50953604-50953796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:25-183
               
               
               Cow position:chr15:10333070-10332905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr15:9465738-9465576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-186
               
               
               Cow position:chr15:16230283-16230130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:25-191
               
               
               Cow position:chr15:85185-85350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-192
               
               
               Cow position:chr15:38860067-38860237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-198
               
               
               Cow position:chr15:24031261-24031085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:25-199
               
               
               Cow position:chr15:11995966-11996140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:25-199
               
               
               Cow position:chr15:20459247-20459423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr15:25358296-25358119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:25-204
               
               
               Cow position:chr15:4295824-4295643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 161

               
               
               Conread position:25-204
               
               
               Cow position:chr15:4418339-4418518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 77

               
               
               Conread position:25-204
               
               
               Cow position:chr15:26919214-26919385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-209
               
               
               Cow position:chr15:44089102-44089285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:25-212
               
               
               Cow position:chr15:12974400-12974210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:25-212
               
               
               Cow position:chr15:29928027-29927841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:25-212
               
               
               Cow position:chr15:31495162-31495342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-214
               
               
               Cow position:chr15:39892764-39892957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr15:30470911-30471105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 174

               
               
               Conread position:25-217
               
               
               Cow position:chr15:27900449-27900635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:25-217
               
               
               Cow position:chr15:43673883-43674073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 119

               
               
               Conread position:25-218
               
               
               Cow position:chr15:21941785-21941978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-218
               
               
               Cow position:chr15:36388352-36388168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:25-218
               
               
               Cow position:chr15:45574575-45574759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:25-219
               
               
               Cow position:chr15:10423256-10423051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-224
               
               
               Cow position:chr15:8715121-8715318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:25-225
               
               
               Cow position:chr15:17196209-17196004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-227
               
               
               Cow position:chr15:19186557-19186764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:25-232
               
               
               Cow position:chr15:10953098-10952888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:28-192
               
               
               Cow position:chr15:48052546-48052703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:28-198
               
               
               Cow position:chr15:36887893-36887728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:28-198
               
               
               Cow position:chr15:49483686-49483513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:28-200
               
               
               Cow position:chr15:34273859-34273685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-203
               
               
               Cow position:chr15:38420494-38420671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr15:16530710-16530888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr15:17084267-17084089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr15:37865424-37865243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:28-204
               
               
               Cow position:chr15:39299257-39299434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:28-204
               
               
               Cow position:chr15:43914037-43914215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr15:44671279-44671457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:28-204
               
               
               Cow position:chr15:47844035-47844205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:28-211
               
               
               Cow position:chr15:31028599-31028784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr15:2620513-2620696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:28-213
               
               
               Cow position:chr15:11987349-11987537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):37, 103

               
               
               Conread position:28-213
               
               
               Cow position:chr15:23275600-23275410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 166

               
               
               Conread position:28-213
               
               
               Cow position:chr15:52317113-52316936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:28-214
               
               
               Cow position:chr15:33740053-33740241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr15:34223924-34223743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 95

               
               
               Conread position:28-214
               
               
               Cow position:chr15:41320899-41321078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:28-214
               
               
               Cow position:chr15:45479060-45478872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr15:6082539-6082730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr15:19553866-19554053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:28-216
               
               
               Cow position:chr15:4861846-4862037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr15:11560457-11560646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:28-216
               
               
               Cow position:chr15:40231179-40230988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr15:28924697-28924894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):37, 104

               
               
               Conread position:28-218
               
               
               Cow position:chr15:8464072-8464263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):23, 19

               
               
               Conread position:28-218
               
               
               Cow position:chr15:9314784-9314596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:28-219
               
               
               Cow position:chr15:7916504-7916697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr15:13846510-13846700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 104

               
               
               Conread position:28-220
               
               
               Cow position:chr15:31416111-31416303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 182

               
               
               Conread position:28-222
               
               
               Cow position:chr15:37069828-37070024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:28-223
               
               
               Cow position:chr15:14760582-14760773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:28-223
               
               
               Cow position:chr15:15512067-15511870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr15:16246654-16246458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:28-224
               
               
               Cow position:chr15:22930292-22930490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:28-225
               
               
               Cow position:chr15:14474401-14474202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 197

               
               
               Conread position:28-226
               
               
               Cow position:chr15:27230820-27230623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-226
               
               
               Cow position:chr15:36353726-36353534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-235
               
               
               Cow position:chr15:698040-697831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-235
               
               
               Cow position:chr15:16018094-16017889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:28-235
               
               
               Cow position:chr15:41624836-41625045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:28-236
               
               
               Cow position:chr15:13184563-13184765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):185, 37

               
               
               Conread position:28-237
               
               
               Cow position:chr15:45245486-45245691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:29-204
               
               
               Cow position:chr15:12546179-12546356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-204
               
               
               Cow position:chr15:18703878-18704050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 63

               
               
               Conread position:29-204
               
               
               Cow position:chr15:28099168-28098996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:29-212
               
               
               Cow position:chr15:20290005-20290183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:30-199
               
               
               Cow position:chr15:36457564-36457729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:30-222
               
               
               Cow position:chr15:4284430-4284236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:31-214
               
               
               Cow position:chr15:22242459-22242275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:31-223
               
               
               Cow position:chr15:44256499-44256305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:31-224
               
               
               Cow position:chr15:37719537-37719723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:32-201
               
               
               Cow position:chr15:30956269-30956438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 73

               
               
               Conread position:32-216
               
               
               Cow position:chr15:19002226-19002413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:35-214
               
               
               Cow position:chr15:40562631-40562810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):30, 78

               
               
               Conread position:36-187
               
               
               Cow position:chr15:33751054-33751201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 40

               
               
               Conread position:36-198
               
               
               Cow position:chr15:12723139-12722973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-201
               
               
               Cow position:chr15:17621268-17621434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:36-202
               
               
               Cow position:chr15:52747576-52747410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):164, 102

               
               
               Conread position:36-204
               
               
               Cow position:chr15:7430020-7429849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-213
               
               
               Cow position:chr15:5523007-5522821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr15:18762989-18763169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:36-215
               
               
               Cow position:chr15:17139973-17140146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:36-217
               
               
               Cow position:chr15:27975821-27976000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 152

               
               
               Conread position:36-218
               
               
               Cow position:chr15:11908898-11909077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:36-219
               
               
               Cow position:chr15:8679706-8679891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-219
               
               
               Cow position:chr15:38811685-38811870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 14

               
               
               Conread position:36-220
               
               
               Cow position:chr15:19950528-19950350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:36-220
               
               
               Cow position:chr15:40494422-40494608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 36

               
               
               Conread position:36-224
               
               
               Cow position:chr15:872953-872764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 140

               
               
               Conread position:36-224
               
               
               Cow position:chr15:41049412-41049598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 82

               
               
               Conread position:36-227
               
               
               Cow position:chr15:18718409-18718605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:37-204
               
               
               Cow position:chr15:50333030-50332858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:37-215
               
               
               Cow position:chr15:25571759-25571941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):5, 152

               
               
               Conread position:39-199
               
               
               Cow position:chr15:29291908-29292070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:39-221
               
               
               Cow position:chr15:18942077-18941902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:40-204
               
               
               Cow position:chr15:36391720-36391554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:40-214
               
               
               Cow position:chr15:45133894-45134069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:40-219
               
               
               Cow position:chr15:26522778-26522957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:40-219
               
               
               Cow position:chr15:27555604-27555783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 170

               
               
               Conread position:40-221
               
               
               Cow position:chr15:15680795-15680977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:40-223
               
               
               Cow position:chr15:24616617-24616435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:41-204
               
               
               Cow position:chr15:29026835-29027000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:42-215
               
               
               Cow position:chr15:12034641-12034823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:43-186
               
               
               Cow position:chr15:16657516-16657371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:43-204
               
               
               Cow position:chr15:27657148-27656984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 94

               
               
               Conread position:45-203
               
               
               Cow position:chr15:11548502-11548343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 62

               
               
               Conread position:47-223
               
               
               Cow position:chr15:33784786-33784960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:49-203
               
               
               Cow position:chr15:36798760-36798610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):148, 36

               
               
               Conread position:50-196
               
               
               Cow position:chr15:38228173-38228026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):16, 41

               
               
               Conread position:50-204
               
               
               Cow position:chr15:13863697-13863850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 130

               
               
               Conread position:50-204
               
               
               Cow position:chr15:20905996-20906146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 79

               
               
               Conread position:50-214
               
               
               Cow position:chr15:27280675-27280511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:50-218
               
               
               Cow position:chr15:11630066-11630232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 64

               
               
               Conread position:50-221
               
               
               Cow position:chr15:26380708-26380879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:50-224
               
               
               Cow position:chr15:32300413-32300241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:53-197
               
               
               Cow position:chr15:41348407-41348260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:53-212
               
               
               Cow position:chr15:28549646-28549807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:55-222
               
               
               Cow position:chr15:16492484-16492319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):139, 55

               
               
               Conread position:56-212
               
               
               Cow position:chr15:19742491-19742334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):10, 118

               
               
               Conread position:57-204
               
               
               Cow position:chr15:36846156-36846302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 137

               
               
               Conread position:58-213
               
               
               Cow position:chr15:43827742-43827896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 48

               
               
               Conread position:60-224
               
               
               Cow position:chr15:6332440-6332601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):144, 86

               
               
               Conread position:61-185
               
               
               Cow position:chr15:4357071-4356950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr15:51831767-51831904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr15:8007003-8006861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr15:32699203-32699341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr15:9888605-9888459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr15:16072706-16072861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr15:33729913-33729759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:62-218
               
               
               Cow position:chr15:45402-45554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr15:7026283-7026442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr15:25667200-25667353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr15:43590237-43590079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr15:11635434-11635281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr15:43020607-43020774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 139

               
               
               Conread position:62-224
               
               
               Cow position:chr15:25877464-25877303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr15:22938740-22938906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 164

               
               
               Conread position:63-198
               
               
               Cow position:chr15:52728428-52728566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:63-203
               
               
               Cow position:chr15:35577223-35577077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:63-204
               
               
               Cow position:chr15:25208736-25208876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:64-204
               
               
               Cow position:chr15:26127806-26127949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 136

               
               
               Conread position:66-201
               
               
               Cow position:chr15:13680759-13680894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-223
               
               
               Cow position:chr15:13513550-13513401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:66-224
               
               
               Cow position:chr15:47990746-47990900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:67-204
               
               
               Cow position:chr15:36539961-36539828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:67-217
               
               
               Cow position:chr15:10512047-10511900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:68-215
               
               
               Cow position:chr15:32948736-32948582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:68-240
               
               
               Cow position:chr15:37717140-37717317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):57, 131

               
               
               Conread position:69-221
               
               
               Cow position:chr15:36904321-36904170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):107, 141

               
               
               Conread position:70-220
               
               
               Cow position:chr15:37237682-37237532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):124, 5

               
               
               Conread position:74-218
               
               
               Cow position:chr15:16958142-16957998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):116, 124

               
               
               Conread position:80-205
               
               
               Cow position:chr15:20649572-20649448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:80-223
               
               
               Cow position:chr15:17122777-17122918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):107, 71

               
               
               Conread position:81-220
               
               
               Cow position:chr15:51811108-51810973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:83-222
               
               
               Cow position:chr15:40010541-40010678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:84-209
               
               
               Cow position:chr15:28047761-28047882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 77

               
               
               Conread position:85-222
               
               
               Cow position:chr15:53275753-53275891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:88-185
               
               
               Cow position:chr15:1690149-1690246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:88-204
               
               
               Cow position:chr15:42142872-42142756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:88-216
               
               
               Cow position:chr15:18206787-18206908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:89-217
               
               
               Cow position:chr15:667171-667047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:89-221
               
               
               Cow position:chr15:40159650-40159780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:89-223
               
               
               Cow position:chr15:241942-242077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:90-218
               
               
               Cow position:chr15:20900319-20900191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 44

               
               
               Conread position:93-223
               
               
               Cow position:chr15:18784756-18784628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:93-232
               
               
               Cow position:chr15:25690684-25690548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:94-212
               
               
               Cow position:chr15:32022323-32022442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:102-225
               
               
               Cow position:chr15:33227854-33227731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):119, 59

               
               
               Conread position:107-225
               
               
               Cow position:chr15:24282912-24283031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:115-214
               
               
               Cow position:chr15:10737808-10737906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:118-228
               
               
               Cow position:chr15:38845893-38845782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr16:11957575-11957389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:1-186
               
               
               Cow position:chr16:15905247-15905055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 175

               
               
               Conread position:1-195
               
               
               Cow position:chr16:6262851-6262651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr16:50286516-50286714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):12, 142

               
               
               Conread position:1-204
               
               
               Cow position:chr16:22842054-22841840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:1-208
               
               
               Cow position:chr16:42444159-42444370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:1-213
               
               
               Cow position:chr16:29712424-29712632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:1-214
               
               
               Cow position:chr16:45139674-45139877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:1-214
               
               
               Cow position:chr16:50409254-50409464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-216
               
               
               Cow position:chr16:38905231-38905009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 140

               
               
               Conread position:1-218
               
               
               Cow position:chr16:13306869-13306655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-220
               
               
               Cow position:chr16:3032714-3032492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):12, 199

               
               
               Conread position:1-220
               
               
               Cow position:chr16:19053880-19053667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):16, 124

               
               
               Conread position:1-220
               
               
               Cow position:chr16:38743031-38743252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:1-221
               
               
               Cow position:chr16:7665640-7665864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:173
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-223
               
               
               Cow position:chr16:38243658-38243440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):62, 190

               
               
               Conread position:1-232
               
               
               Cow position:chr16:24617073-24617304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):52, 145

               
               
               Conread position:1-236
               
               
               Cow position:chr16:23472752-23472979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 100

               
               
               Conread position:2-223
               
               
               Cow position:chr16:27051045-27051273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 200

               
               
               Conread position:2-228
               
               
               Cow position:chr16:11359155-11359377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:3-164
               
               
               Cow position:chr16:43185298-43185466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr16:22850330-22850516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr16:34223452-34223640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:3-186
               
               
               Cow position:chr16:7442097-7441911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:3-192
               
               
               Cow position:chr16:20205462-20205659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr16:2750982-2751176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:3-199
               
               
               Cow position:chr16:8231352-8231161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:3-199
               
               
               Cow position:chr16:14210771-14210580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:3-199
               
               
               Cow position:chr16:18048154-18047950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr16:42539587-42539378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 182

               
               
               Conread position:3-199
               
               
               Cow position:chr16:45700484-45700278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:3-203
               
               
               Cow position:chr16:11003564-11003357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 201

               
               
               Conread position:3-204
               
               
               Cow position:chr16:29557627-29557418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:3-204
               
               
               Cow position:chr16:32142091-32142299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:3-204
               
               
               Cow position:chr16:53720341-53720132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:3-205
               
               
               Cow position:chr16:30186646-30186852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):21, 68

               
               
               Conread position:3-205
               
               
               Cow position:chr16:44138491-44138283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):23, 191

               
               
               Conread position:3-207
               
               
               Cow position:chr16:15714110-15714322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-207
               
               
               Cow position:chr16:47632864-47633083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):14, 94

               
               
               Conread position:3-213
               
               
               Cow position:chr16:31573255-31573458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):19, 80

               
               
               Conread position:3-214
               
               
               Cow position:chr16:22984757-22984967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 126

               
               
               Conread position:3-215
               
               
               Cow position:chr16:15407556-15407338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:3-215
               
               
               Cow position:chr16:36982397-36982189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:3-216
               
               
               Cow position:chr16:29159125-29159328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):19, 120

               
               
               Conread position:3-216
               
               
               Cow position:chr16:30662268-30662054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:3-219
               
               
               Cow position:chr16:46655285-46655501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:3-220
               
               
               Cow position:chr16:20476536-20476754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:3-221
               
               
               Cow position:chr16:13696681-13696455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr16:23740025-23739805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:3-222
               
               
               Cow position:chr16:7583398-7583623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):18, 116

               
               
               Conread position:3-222
               
               
               Cow position:chr16:8065887-8065663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 208

               
               
               Conread position:3-223
               
               
               Cow position:chr16:10032868-10033090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 196

               
               
               Conread position:3-223
               
               
               Cow position:chr16:49336229-49336444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:3-225
               
               
               Cow position:chr16:26702913-26702687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):63, 26

               
               
               Conread position:3-226
               
               
               Cow position:chr16:56082364-56082139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 198

               
               
               Conread position:3-232
               
               
               Cow position:chr16:55683301-55683535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:4-175
               
               
               Cow position:chr16:1220176-1220000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 113

               
               
               Conread position:4-185
               
               
               Cow position:chr16:4910517-4910334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:4-186
               
               
               Cow position:chr16:33632673-33632489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):22, 73

               
               
               Conread position:4-192
               
               
               Cow position:chr16:49215990-49215814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-201
               
               
               Cow position:chr16:13483573-13483374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 96

               
               
               Conread position:4-202
               
               
               Cow position:chr16:35074570-35074769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 192

               
               
               Conread position:4-204
               
               
               Cow position:chr16:30908939-30908741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 102

               
               
               Conread position:4-204
               
               
               Cow position:chr16:34153565-34153364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):17, 155

               
               
               Conread position:4-207
               
               
               Cow position:chr16:42433103-42432906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):62, 108

               
               
               Conread position:4-214
               
               
               Cow position:chr16:9596372-9596586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 127

               
               
               Conread position:4-214
               
               
               Cow position:chr16:22776414-22776202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:4-214
               
               
               Cow position:chr16:43758644-43758430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):18, 166

               
               
               Conread position:4-215
               
               
               Cow position:chr16:44654279-44654066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:4-216
               
               
               Cow position:chr16:8522383-8522172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):25, 48

               
               
               Conread position:4-218
               
               
               Cow position:chr16:16842520-16842308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:4-221
               
               
               Cow position:chr16:18243744-18243961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:4-223
               
               
               Cow position:chr16:12458078-12457858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:4-223
               
               
               Cow position:chr16:38663708-38663484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):16, 52

               
               
               Conread position:4-225
               
               
               Cow position:chr16:23811126-23811358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-229
               
               
               Cow position:chr16:19282018-19282244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:177
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):45, 23

               
               
               Conread position:4-233
               
               
               Cow position:chr16:56615495-56615267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):61, 76

               
               
               Conread position:5-185
               
               
               Cow position:chr16:15023624-15023446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:5-191
               
               
               Cow position:chr16:29037922-29038111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:5-199
               
               
               Cow position:chr16:14242374-14242570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 50

               
               
               Conread position:5-199
               
               
               Cow position:chr16:23681370-23681563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):18, 40

               
               
               Conread position:5-212
               
               
               Cow position:chr16:28199032-28199239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):24, 125

               
               
               Conread position:5-216
               
               
               Cow position:chr16:21974955-21974740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):61, 170

               
               
               Conread position:6-180
               
               
               Cow position:chr16:4192423-4192248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:6-184
               
               
               Cow position:chr16:14568481-14568304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:6-184
               
               
               Cow position:chr16:56265508-56265690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:6-199
               
               
               Cow position:chr16:28444482-28444286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 192

               
               
               Conread position:6-199
               
               
               Cow position:chr16:47852585-47852396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:6-204
               
               
               Cow position:chr16:8469685-8469887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-211
               
               
               Cow position:chr16:8448646-8448445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):19, 96

               
               
               Conread position:6-214
               
               
               Cow position:chr16:42734003-42733804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 109

               
               
               Conread position:7-222
               
               
               Cow position:chr16:49252543-49252343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 20

               
               
               Conread position:8-185
               
               
               Cow position:chr16:9958837-9959017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:8-185
               
               
               Cow position:chr16:31241282-31241104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:8-199
               
               
               Cow position:chr16:11083004-11083198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 121

               
               
               Conread position:8-212
               
               
               Cow position:chr16:47662740-47662941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):58, 157

               
               
               Conread position:8-214
               
               
               Cow position:chr16:21442599-21442394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):57, 69

               
               
               Conread position:8-224
               
               
               Cow position:chr16:24202857-24202634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:9-217
               
               
               Cow position:chr16:17923294-17923085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:10-178
               
               
               Cow position:chr16:12523064-12523239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):13, 152

               
               
               Conread position:10-205
               
               
               Cow position:chr16:19670345-19670150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:10-220
               
               
               Cow position:chr16:34998611-34998398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):21, 9

               
               
               Conread position:10-224
               
               
               Cow position:chr16:33236275-33236060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 145

               
               
               Conread position:10-225
               
               
               Cow position:chr16:30290316-30290542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:10-238
               
               
               Cow position:chr16:38355419-38355192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 100

               
               
               Conread position:11-217
               
               
               Cow position:chr16:30305803-30305602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:12-225
               
               
               Cow position:chr16:33411715-33411926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):53, 13

               
               
               Conread position:14-233
               
               
               Cow position:chr16:38384470-38384258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):51, 11

               
               
               Conread position:15-204
               
               
               Cow position:chr16:23088865-23089048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:15-215
               
               
               Cow position:chr16:23823009-23822811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):6, 67

               
               
               Conread position:15-218
               
               
               Cow position:chr16:53553699-53553488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 9

               
               
               Conread position:16-214
               
               
               Cow position:chr16:37154236-37154444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:16-220
               
               
               Cow position:chr16:18205980-18206178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-223
               
               
               Cow position:chr16:56912667-56912457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):49, 25

               
               
               Conread position:17-205
               
               
               Cow position:chr16:52325578-52325388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:18-220
               
               
               Cow position:chr16:13796290-13796488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 145

               
               
               Conread position:18-231
               
               
               Cow position:chr16:10011831-10011618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:19-185
               
               
               Cow position:chr16:31565721-31565553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-197
               
               
               Cow position:chr16:55965206-55965386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr16:12543012-12543191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:19-199
               
               
               Cow position:chr16:15370709-15370885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:19-205
               
               
               Cow position:chr16:8953660-8953465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:19-207
               
               
               Cow position:chr16:36286661-36286479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):46, 96

               
               
               Conread position:19-212
               
               
               Cow position:chr16:5243109-5243301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 150

               
               
               Conread position:19-212
               
               
               Cow position:chr16:20743291-20743098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 118

               
               
               Conread position:19-213
               
               
               Cow position:chr16:12057074-12057266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:19-214
               
               
               Cow position:chr16:9497245-9497043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:19-214
               
               
               Cow position:chr16:32426701-32426508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-214
               
               
               Cow position:chr16:50841262-50841460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-217
               
               
               Cow position:chr16:17745859-17746061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-218
               
               
               Cow position:chr16:9730183-9729977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 27

               
               
               Conread position:19-220
               
               
               Cow position:chr16:8090509-8090305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-226
               
               
               Cow position:chr16:7011092-7011303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-229
               
               
               Cow position:chr16:24674655-24674441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 173

               
               
               Conread position:20-185
               
               
               Cow position:chr16:42200924-42201093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 5

               
               
               Conread position:20-216
               
               
               Cow position:chr16:30646536-30646727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 96

               
               
               Conread position:21-221
               
               
               Cow position:chr16:24128729-24128929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):10, 67

               
               
               Conread position:22-213
               
               
               Cow position:chr16:33771698-33771889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:23-227
               
               
               Cow position:chr16:49388420-49388615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:24-199
               
               
               Cow position:chr16:49734117-49733943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 8

               
               
               Conread position:24-201
               
               
               Cow position:chr16:42253370-42253202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:24-204
               
               
               Cow position:chr16:33073853-33073680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-214
               
               
               Cow position:chr16:38244592-38244401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:24-218
               
               
               Cow position:chr16:17617335-17617143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 168

               
               
               Conread position:25-158
               
               
               Cow position:chr16:22927551-22927683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:25-172
               
               
               Cow position:chr16:33267742-33267896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-177
               
               
               Cow position:chr16:43866819-43866666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:25-183
               
               
               Cow position:chr16:6802661-6802496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:25-183
               
               
               Cow position:chr16:11654071-11654230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:25-183
               
               
               Cow position:chr16:29060406-29060570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-184
               
               
               Cow position:chr16:48145373-48145219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:25-185
               
               
               Cow position:chr16:9242230-9242396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr16:15949479-15949320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:25-185
               
               
               Cow position:chr16:26676657-26676501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:25-185
               
               
               Cow position:chr16:51143828-51143987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 84

               
               
               Conread position:25-191
               
               
               Cow position:chr16:43308532-43308371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:25-192
               
               
               Cow position:chr16:12077458-12077286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 149

               
               
               Conread position:25-192
               
               
               Cow position:chr16:35297437-35297597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr16:40029855-40029690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-195
               
               
               Cow position:chr16:15762127-15761953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr16:4852083-4851913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:25-199
               
               
               Cow position:chr16:12379323-12379141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):40, 178

               
               
               Conread position:25-201
               
               
               Cow position:chr16:31575173-31575350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr16:336559-336378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr16:5382210-5382393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr16:9578462-9578287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:25-204
               
               
               Cow position:chr16:10249790-10249610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr16:11019486-11019308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:25-204
               
               
               Cow position:chr16:12091634-12091446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):42, 181

               
               
               Conread position:25-204
               
               
               Cow position:chr16:13996167-13995989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:25-204
               
               
               Cow position:chr16:16968673-16968501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:25-204
               
               
               Cow position:chr16:33302213-33302391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:25-204
               
               
               Cow position:chr16:45278565-45278745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:25-205
               
               
               Cow position:chr16:56670890-56670701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-207
               
               
               Cow position:chr16:12324484-12324662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:25-207
               
               
               Cow position:chr16:28233276-28233095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):41, 143

               
               
               Conread position:25-211
               
               
               Cow position:chr16:12276459-12276275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 166

               
               
               Conread position:25-213
               
               
               Cow position:chr16:33290413-33290602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:25-214
               
               
               Cow position:chr16:9560466-9560268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr16:14841388-14841581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr16:39683072-39682883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:25-216
               
               
               Cow position:chr16:8810065-8809879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:25-216
               
               
               Cow position:chr16:42038091-42038284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 157

               
               
               Conread position:25-217
               
               
               Cow position:chr16:34257009-34256817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-218
               
               
               Cow position:chr16:21044325-21044517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-218
               
               
               Cow position:chr16:22323782-22323592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 115

               
               
               Conread position:25-218
               
               
               Cow position:chr16:44394309-44394509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr16:889340-889157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 23

               
               
               Conread position:25-219
               
               
               Cow position:chr16:6343880-6343687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-219
               
               
               Cow position:chr16:10032668-10032863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:25-219
               
               
               Cow position:chr16:14343608-14343800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 157

               
               
               Conread position:25-219
               
               
               Cow position:chr16:42398863-42398667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr16:45348414-45348614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr16:10020574-10020765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 18

               
               
               Conread position:25-220
               
               
               Cow position:chr16:49860266-49860457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:25-221
               
               
               Cow position:chr16:50442577-50442776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-222
               
               
               Cow position:chr16:48455708-48455893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr16:2223368-2223168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr16:7343401-7343201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:25-223
               
               
               Cow position:chr16:8288918-8288723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:25-223
               
               
               Cow position:chr16:18429616-18429814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:25-223
               
               
               Cow position:chr16:22773008-22773198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:25-223
               
               
               Cow position:chr16:41530271-41530083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:25-223
               
               
               Cow position:chr16:45193780-45193584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:25-225
               
               
               Cow position:chr16:7152142-7151947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 94

               
               
               Conread position:25-226
               
               
               Cow position:chr16:9097052-9097256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-227
               
               
               Cow position:chr16:6609475-6609279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:25-229
               
               
               Cow position:chr16:44428912-44429111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:27-185
               
               
               Cow position:chr16:27759575-27759412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:27-208
               
               
               Cow position:chr16:7910772-7910581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:27-220
               
               
               Cow position:chr16:31011358-31011554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:28-178
               
               
               Cow position:chr16:42864705-42864554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:28-183
               
               
               Cow position:chr16:12939652-12939803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:28-185
               
               
               Cow position:chr16:7812722-7812881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr16:32512274-32512115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr16:33646047-33646203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:28-185
               
               
               Cow position:chr16:50395403-50395561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:28-198
               
               
               Cow position:chr16:12220713-12220887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr16:10171570-10171746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-201
               
               
               Cow position:chr16:17665685-17665857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:28-204
               
               
               Cow position:chr16:9729227-9729405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr16:19047402-19047226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:28-204
               
               
               Cow position:chr16:22972742-22972563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr16:23483314-23483488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:28-204
               
               
               Cow position:chr16:25369418-25369596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr16:31117583-31117414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-208
               
               
               Cow position:chr16:25419222-25419040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-209
               
               
               Cow position:chr16:17027556-17027739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr16:29815005-29815189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):174, 23

               
               
               Conread position:28-212
               
               
               Cow position:chr16:31484629-31484453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:28-213
               
               
               Cow position:chr16:258250-258067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:148
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr16:16545470-16545658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr16:16552593-16552783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr16:25109343-25109159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:28-214
               
               
               Cow position:chr16:35343441-35343254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-215
               
               
               Cow position:chr16:22318919-22318732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):179, 81

               
               
               Conread position:28-215
               
               
               Cow position:chr16:45122067-45122261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr16:46548237-46548044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr16:53813621-53813431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 122

               
               
               Conread position:28-216
               
               
               Cow position:chr16:3049122-3048936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 92

               
               
               Conread position:28-216
               
               
               Cow position:chr16:4277522-4277336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:28-217
               
               
               Cow position:chr16:5654531-5654724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-217
               
               
               Cow position:chr16:8738097-8738288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:28-217
               
               
               Cow position:chr16:33299426-33299625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr16:7928353-7928164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:28-218
               
               
               Cow position:chr16:55042536-55042343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 129

               
               
               Conread position:28-220
               
               
               Cow position:chr16:11094795-11094596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr16:12493083-12492888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:28-220
               
               
               Cow position:chr16:15927267-15927461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-222
               
               
               Cow position:chr16:30935891-30936089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr16:9987036-9986833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 176

               
               
               Conread position:28-223
               
               
               Cow position:chr16:15981362-15981165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:28-223
               
               
               Cow position:chr16:18573022-18572828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:28-223
               
               
               Cow position:chr16:26610671-26610870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr16:37117107-37117303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:28-223
               
               
               Cow position:chr16:44744101-44743903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr16:45943734-45943540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):37, 135

               
               
               Conread position:28-224
               
               
               Cow position:chr16:52357507-52357309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-240
               
               
               Cow position:chr16:12819027-12819244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-192
               
               
               Cow position:chr16:18668993-18669156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:29-199
               
               
               Cow position:chr16:50569296-50569462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:29-204
               
               
               Cow position:chr16:11365027-11364850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-213
               
               
               Cow position:chr16:2224590-2224402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:29-214
               
               
               Cow position:chr16:50078726-50078539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:29-219
               
               
               Cow position:chr16:51610801-51610605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 180

               
               
               Conread position:29-223
               
               
               Cow position:chr16:27327092-27326892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-223
               
               
               Cow position:chr16:43371780-43371973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:32-220
               
               
               Cow position:chr16:11775958-11775778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:33-224
               
               
               Cow position:chr16:50282395-50282205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:34-218
               
               
               Cow position:chr16:47304087-47303893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 165

               
               
               Conread position:35-202
               
               
               Cow position:chr16:29311562-29311732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):30, 165

               
               
               Conread position:35-204
               
               
               Cow position:chr16:44144427-44144598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 71

               
               
               Conread position:35-215
               
               
               Cow position:chr16:51531373-51531192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):30, 146

               
               
               Conread position:35-216
               
               
               Cow position:chr16:26551002-26550824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:35-217
               
               
               Cow position:chr16:14959-14778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):29, 129

               
               
               Conread position:35-217
               
               
               Cow position:chr16:47274688-47274506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):29, 163

               
               
               Conread position:35-222
               
               
               Cow position:chr16:17180198-17180388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:36-174
               
               
               Cow position:chr16:13578821-13578678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-185
               
               
               Cow position:chr16:13698554-13698706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:36-198
               
               
               Cow position:chr16:46552834-46552993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):29, 76

               
               
               Conread position:36-204
               
               
               Cow position:chr16:4857062-4856892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr16:20614538-20614703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):28, 34

               
               
               Conread position:36-204
               
               
               Cow position:chr16:36651631-36651799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:36-204
               
               
               Cow position:chr16:56595350-56595182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):30, 159

               
               
               Conread position:36-206
               
               
               Cow position:chr16:32301966-32301793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-215
               
               
               Cow position:chr16:5396777-5396598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:36-219
               
               
               Cow position:chr16:14990268-14990458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:36-219
               
               
               Cow position:chr16:42107669-42107851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 133

               
               
               Conread position:36-220
               
               
               Cow position:chr16:11584365-11584186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:36-223
               
               
               Cow position:chr16:30561410-30561587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):6, 32

               
               
               Conread position:36-223
               
               
               Cow position:chr16:31701643-31701820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):6, 32

               
               
               Conread position:36-224
               
               
               Cow position:chr16:30581079-30580891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:37-200
               
               
               Cow position:chr16:21450887-21451053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:39-183
               
               
               Cow position:chr16:46184200-46184347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:39-192
               
               
               Cow position:chr16:34753917-34753758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:39-204
               
               
               Cow position:chr16:9615175-9615008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:39-240
               
               
               Cow position:chr16:55613461-55613257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:40-191
               
               
               Cow position:chr16:23564176-23564332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-192
               
               
               Cow position:chr16:12275748-12275596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:40-217
               
               
               Cow position:chr16:11467644-11467819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 152

               
               
               Conread position:40-217
               
               
               Cow position:chr16:15992947-15992766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-218
               
               
               Cow position:chr16:8493947-8493771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:40-218
               
               
               Cow position:chr16:16542893-16543072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:40-218
               
               
               Cow position:chr16:50943430-50943605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 47

               
               
               Conread position:40-220
               
               
               Cow position:chr16:38581046-38581226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):24, 156

               
               
               Conread position:40-223
               
               
               Cow position:chr16:12133671-12133492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 120

               
               
               Conread position:40-223
               
               
               Cow position:chr16:48580968-48581151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):25, 163

               
               
               Conread position:40-228
               
               
               Cow position:chr16:4615101-4615292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 174

               
               
               Conread position:41-217
               
               
               Cow position:chr16:42992261-42992440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-218
               
               
               Cow position:chr16:24138707-24138532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):22, 49

               
               
               Conread position:41-220
               
               
               Cow position:chr16:43909794-43909611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:42-218
               
               
               Cow position:chr16:51393345-51393169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:42-222
               
               
               Cow position:chr16:12507216-12507033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:42-224
               
               
               Cow position:chr16:27117350-27117532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 153

               
               
               Conread position:44-217
               
               
               Cow position:chr16:12102583-12102753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 61

               
               
               Conread position:50-186
               
               
               Cow position:chr16:51500983-51501117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 67

               
               
               Conread position:50-195
               
               
               Cow position:chr16:41653027-41653170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 56

               
               
               Conread position:50-202
               
               
               Cow position:chr16:8083876-8083722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):15, 93

               
               
               Conread position:50-204
               
               
               Cow position:chr16:28775667-28775512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 94

               
               
               Conread position:50-216
               
               
               Cow position:chr16:56874177-56874014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:50-218
               
               
               Cow position:chr16:4077993-4077824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):61, 18

               
               
               Conread position:50-221
               
               
               Cow position:chr16:12274123-12274298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 15

               
               
               Conread position:50-223
               
               
               Cow position:chr16:5285953-5286122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:50-225
               
               
               Cow position:chr16:26842800-26842973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 146

               
               
               Conread position:52-204
               
               
               Cow position:chr16:24672805-24672653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 33

               
               
               Conread position:52-221
               
               
               Cow position:chr16:7727987-7727819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:53-229
               
               
               Cow position:chr16:23881154-23880982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):14, 62

               
               
               Conread position:54-204
               
               
               Cow position:chr16:23053881-23054033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 142

               
               
               Conread position:54-211
               
               
               Cow position:chr16:17142992-17143151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):13, 150

               
               
               Conread position:57-214
               
               
               Cow position:chr16:52227005-52226849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:59-213
               
               
               Cow position:chr16:41115926-41115777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:60-225
               
               
               Cow position:chr16:30368761-30368596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):6, 29

               
               
               Conread position:61-204
               
               
               Cow position:chr16:12251086-12251229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):59, 131

               
               
               Conread position:61-224
               
               
               Cow position:chr16:24203091-24202929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr16:7270470-7270347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr16:56690071-56689938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:62-198
               
               
               Cow position:chr16:39516530-39516395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr16:9017940-9018078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:62-205
               
               
               Cow position:chr16:1856669-1856812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr16:9616781-9616633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:62-211
               
               
               Cow position:chr16:12096787-12096638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:62-213
               
               
               Cow position:chr16:956819-956670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr16:12256023-12256173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:62-214
               
               
               Cow position:chr16:16232124-16232276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr16:23761815-23761969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr16:30055034-30054885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr16:31558969-31559124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr16:41095797-41095947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr16:16935450-16935303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr16:21002307-21002152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr16:4911378-4911230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr16:5360202-5360043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr16:56126713-56126556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr16:23718907-23718753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr16:31090379-31090535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):149, 114

               
               
               Conread position:62-222
               
               
               Cow position:chr16:19756709-19756555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):103, 65

               
               
               Conread position:62-224
               
               
               Cow position:chr16:23058368-23058208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 77

               
               
               Conread position:62-232
               
               
               Cow position:chr16:21315005-21315178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:63-200
               
               
               Cow position:chr16:48875843-48875701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):62, 137

               
               
               Conread position:63-210
               
               
               Cow position:chr16:24671982-24671829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 134

               
               
               Conread position:63-218
               
               
               Cow position:chr16:31149446-31149594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:63-220
               
               
               Cow position:chr16:11916141-11915984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 53

               
               
               Conread position:63-223
               
               
               Cow position:chr16:31159292-31159122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):51, 140

               
               
               Conread position:63-223
               
               
               Cow position:chr16:39398902-39398742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):136, 148

               
               
               Conread position:63-225
               
               
               Cow position:chr16:51216977-51216816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):141, 61

               
               
               Conread position:63-226
               
               
               Cow position:chr16:4062712-4062558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:66-185
               
               
               Cow position:chr16:11173633-11173516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:66-201
               
               
               Cow position:chr16:10039775-10039640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-212
               
               
               Cow position:chr16:56313237-56313091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 92

               
               
               Conread position:66-214
               
               
               Cow position:chr16:8795647-8795494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):49, 135

               
               
               Conread position:68-224
               
               
               Cow position:chr16:56474104-56474259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 21

               
               
               Conread position:69-198
               
               
               Cow position:chr16:46553895-46553767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:69-224
               
               
               Cow position:chr16:39646688-39646839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):151, 55

               
               
               Conread position:70-224
               
               
               Cow position:chr16:50085415-50085266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:72-204
               
               
               Cow position:chr16:15957403-15957272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):115, 70

               
               
               Conread position:73-214
               
               
               Cow position:chr16:47834999-47835133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:75-201
               
               
               Cow position:chr16:22739102-22738976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:75-224
               
               
               Cow position:chr16:16368652-16368510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:80-213
               
               
               Cow position:chr16:19720733-19720597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:80-234
               
               
               Cow position:chr16:52365820-52365667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:81-225
               
               
               Cow position:chr16:38852713-38852572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):115, 30

               
               
               Conread position:85-198
               
               
               Cow position:chr16:27003960-27004074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:85-218
               
               
               Cow position:chr16:56612323-56612189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:86-223
               
               
               Cow position:chr16:27016256-27016388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 35

               
               
               Conread position:88-218
               
               
               Cow position:chr16:31471770-31471896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:88-220
               
               
               Cow position:chr16:39452865-39452996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:88-220
               
               
               Cow position:chr16:46434066-46433936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:88-238
               
               
               Cow position:chr16:37372834-37372983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 9

               
               
               Conread position:89-217
               
               
               Cow position:chr16:26501542-26501669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):123, 35

               
               
               Conread position:93-212
               
               
               Cow position:chr16:11634767-11634887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:95-186
               
               
               Cow position:chr16:21581757-21581848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:77
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:97-223
               
               
               Cow position:chr16:31689523-31689394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:98-220
               
               
               Cow position:chr16:24459152-24459274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:98-223
               
               
               Cow position:chr16:17209203-17209077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:99-218
               
               
               Cow position:chr16:56114198-56114081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:101-220
               
               
               Cow position:chr16:56248829-56248708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:102-223
               
               
               Cow position:chr16:24752114-24751992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:104-219
               
               
               Cow position:chr16:54692886-54693000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:105-207
               
               
               Cow position:chr16:44568898-44568796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:114-218
               
               
               Cow position:chr16:13496378-13496483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:115-223
               
               
               Cow position:chr16:9196705-9196596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:119-215
               
               
               Cow position:chr16:47578421-47578517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:124-223
               
               
               Cow position:chr16:24751852-24751752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:83
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:1-185
               
               
               Cow position:chr17:13291134-13290945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-200
               
               
               Cow position:chr17:21806409-21806205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr17:3202369-3202164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr17:12887402-12887599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:1-205
               
               
               Cow position:chr17:1463288-1463080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr17:25126393-25126598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 108

               
               
               Conread position:1-219
               
               
               Cow position:chr17:32349114-32349325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 13

               
               
               Conread position:1-220
               
               
               Cow position:chr17:26233791-26233561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-220
               
               
               Cow position:chr17:35149484-35149267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):65, 24

               
               
               Conread position:1-221
               
               
               Cow position:chr17:32978887-32978676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):60, 18

               
               
               Conread position:1-223
               
               
               Cow position:chr17:6156074-6156299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):13, 161

               
               
               Conread position:1-223
               
               
               Cow position:chr17:6786976-6787204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:177
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):24, 7

               
               
               Conread position:1-224
               
               
               Cow position:chr17:4817571-4817792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:1-226
               
               
               Cow position:chr17:29026114-29026344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 215

               
               
               Conread position:2-196
               
               
               Cow position:chr17:40771880-40772069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:2-218
               
               
               Cow position:chr17:5179308-5179522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 17

               
               
               Conread position:2-224
               
               
               Cow position:chr17:23063760-23063988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 214

               
               
               Conread position:3-185
               
               
               Cow position:chr17:11362226-11362404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-185
               
               
               Cow position:chr17:20199299-20199125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-195
               
               
               Cow position:chr17:14033599-14033404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:3-201
               
               
               Cow position:chr17:24559331-24559536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):17, 201

               
               
               Conread position:3-204
               
               
               Cow position:chr17:19783099-19783303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 68

               
               
               Conread position:3-205
               
               
               Cow position:chr17:15664718-15664925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 102

               
               
               Conread position:3-211
               
               
               Cow position:chr17:11397708-11397919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 128

               
               
               Conread position:3-214
               
               
               Cow position:chr17:17180090-17180303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):18, 8

               
               
               Conread position:3-215
               
               
               Cow position:chr17:26072720-26072499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):23, 192

               
               
               Conread position:3-217
               
               
               Cow position:chr17:12108845-12109067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):20, 200

               
               
               Conread position:3-217
               
               
               Cow position:chr17:18201798-18202018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 202

               
               
               Conread position:3-218
               
               
               Cow position:chr17:24841736-24841955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 171

               
               
               Conread position:3-218
               
               
               Cow position:chr17:26000162-26000380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 110

               
               
               Conread position:3-219
               
               
               Cow position:chr17:25587415-25587202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:3-220
               
               
               Cow position:chr17:26757407-26757182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 209

               
               
               Conread position:3-221
               
               
               Cow position:chr17:15354972-15355196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):23, 198

               
               
               Conread position:3-223
               
               
               Cow position:chr17:18146226-18146452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):23, 210

               
               
               Conread position:3-224
               
               
               Cow position:chr17:11618629-11618854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:169
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-233
               
               
               Cow position:chr17:21863697-21863937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:4-183
               
               
               Cow position:chr17:24862506-24862681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-192
               
               
               Cow position:chr17:5344665-5344854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):60, 166

               
               
               Conread position:4-192
               
               
               Cow position:chr17:20992995-20992803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:4-192
               
               
               Cow position:chr17:26448587-26448778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:4-192
               
               
               Cow position:chr17:32554005-32553815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:4-192
               
               
               Cow position:chr17:43957706-43957896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 144

               
               
               Conread position:4-199
               
               
               Cow position:chr17:14025869-14025664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-199
               
               
               Cow position:chr17:17410335-17410542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-199
               
               
               Cow position:chr17:20848565-20848768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):17, 122

               
               
               Conread position:4-201
               
               
               Cow position:chr17:5039005-5038813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:4-201
               
               
               Cow position:chr17:7571145-7571350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-204
               
               
               Cow position:chr17:25467029-25467239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):16, 23

               
               
               Conread position:4-207
               
               
               Cow position:chr17:41380462-41380268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:4-211
               
               
               Cow position:chr17:32278860-32278648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-211
               
               
               Cow position:chr17:32280712-32280924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-213
               
               
               Cow position:chr17:12289363-12289156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 111

               
               
               Conread position:4-213
               
               
               Cow position:chr17:30665314-30665525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 92

               
               
               Conread position:4-220
               
               
               Cow position:chr17:1469421-1469629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 50

               
               
               Conread position:4-223
               
               
               Cow position:chr17:27730585-27730811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 213

               
               
               Conread position:4-225
               
               
               Cow position:chr17:43717285-43717072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 23

               
               
               Conread position:4-231
               
               
               Cow position:chr17:9509948-9509718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:166
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:4-232
               
               
               Cow position:chr17:25815651-25815865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):17, 62

               
               
               Conread position:5-192
               
               
               Cow position:chr17:27183898-27183707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 156

               
               
               Conread position:5-201
               
               
               Cow position:chr17:1562737-1562547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:5-202
               
               
               Cow position:chr17:39963920-39964122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:5-207
               
               
               Cow position:chr17:25702642-25702856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:5-218
               
               
               Cow position:chr17:25189330-25189548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):14, 177

               
               
               Conread position:5-223
               
               
               Cow position:chr17:20306369-20306602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:5-223
               
               
               Cow position:chr17:28468171-28468390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 35

               
               
               Conread position:5-225
               
               
               Cow position:chr17:25117927-25118152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 209

               
               
               Conread position:5-235
               
               
               Cow position:chr17:10023102-10023334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):9, 162

               
               
               Conread position:6-203
               
               
               Cow position:chr17:9935759-9935558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):7, 87

               
               
               Conread position:6-204
               
               
               Cow position:chr17:40384156-40383959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):78, 10

               
               
               Conread position:6-205
               
               
               Cow position:chr17:9770554-9770753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):60, 12

               
               
               Conread position:6-214
               
               
               Cow position:chr17:12946305-12946104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 47

               
               
               Conread position:6-214
               
               
               Cow position:chr17:25584290-25584501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-223
               
               
               Cow position:chr17:21959640-21959417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:7-202
               
               
               Cow position:chr17:9899954-9900148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):56, 44

               
               
               Conread position:8-185
               
               
               Cow position:chr17:5350075-5349895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 132

               
               
               Conread position:8-191
               
               
               Cow position:chr17:18776135-18775955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 109

               
               
               Conread position:8-199
               
               
               Cow position:chr17:31856721-31856914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:8-200
               
               
               Cow position:chr17:21434679-21434485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:8-200
               
               
               Cow position:chr17:31581519-31581713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 92

               
               
               Conread position:9-203
               
               
               Cow position:chr17:5288215-5288410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):6, 73

               
               
               Conread position:9-211
               
               
               Cow position:chr17:21181506-21181708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:10-214
               
               
               Cow position:chr17:18811007-18810802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:10-217
               
               
               Cow position:chr17:6936626-6936418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 48

               
               
               Conread position:10-225
               
               
               Cow position:chr17:17222388-17222612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:12-218
               
               
               Cow position:chr17:30900366-30900574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 195

               
               
               Conread position:13-184
               
               
               Cow position:chr17:28528911-28529082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):50, 6

               
               
               Conread position:14-213
               
               
               Cow position:chr17:9950604-9950401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:14-218
               
               
               Cow position:chr17:30494101-30493896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):17, 5

               
               
               Conread position:15-216
               
               
               Cow position:chr17:34791005-34790807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):52, 77

               
               
               Conread position:16-186
               
               
               Cow position:chr17:13148313-13148481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:18-223
               
               
               Cow position:chr17:10454524-10454320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:19-185
               
               
               Cow position:chr17:27292394-27292226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-200
               
               
               Cow position:chr17:20093063-20092886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:19-201
               
               
               Cow position:chr17:18267324-18267504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 46

               
               
               Conread position:19-201
               
               
               Cow position:chr17:20855582-20855768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 131

               
               
               Conread position:19-204
               
               
               Cow position:chr17:17418534-17418724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr17:19471708-19471526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:19-204
               
               
               Cow position:chr17:37857630-37857442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr17:42780262-42780071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 69

               
               
               Conread position:19-205
               
               
               Cow position:chr17:1081267-1081455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:19-212
               
               
               Cow position:chr17:15154827-15154630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 182

               
               
               Conread position:19-213
               
               
               Cow position:chr17:34948697-34948891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):50, 176

               
               
               Conread position:19-214
               
               
               Cow position:chr17:1364659-1364862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 181

               
               
               Conread position:19-214
               
               
               Cow position:chr17:20884586-20884782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):48, 154

               
               
               Conread position:19-214
               
               
               Cow position:chr17:24947396-24947590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:19-214
               
               
               Cow position:chr17:27058494-27058293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 182

               
               
               Conread position:19-216
               
               
               Cow position:chr17:25875458-25875656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):44, 92

               
               
               Conread position:19-219
               
               
               Cow position:chr17:42419772-42419965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:19-220
               
               
               Cow position:chr17:6979114-6978913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:19-222
               
               
               Cow position:chr17:21738811-21738603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):48, 196

               
               
               Conread position:19-223
               
               
               Cow position:chr17:31231897-31231692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):45, 6

               
               
               Conread position:19-224
               
               
               Cow position:chr17:40741715-40741917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):46, 68

               
               
               Conread position:19-235
               
               
               Cow position:chr17:29080606-29080817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):186, 46

               
               
               Conread position:20-198
               
               
               Cow position:chr17:2810695-2810874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):6, 125

               
               
               Conread position:20-224
               
               
               Cow position:chr17:3387781-3387988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):45, 80

               
               
               Conread position:20-224
               
               
               Cow position:chr17:15303911-15303708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:20-225
               
               
               Cow position:chr17:5898461-5898259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:21-187
               
               
               Cow position:chr17:5514825-5514987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:22-185
               
               
               Cow position:chr17:25095546-25095714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:22-217
               
               
               Cow position:chr17:19544166-19543972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:24-155
               
               
               Cow position:chr17:1493081-1492948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-203
               
               
               Cow position:chr17:14024563-14024383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:24-204
               
               
               Cow position:chr17:7803107-7802925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:24-204
               
               
               Cow position:chr17:40355326-40355507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):41, 161

               
               
               Conread position:24-214
               
               
               Cow position:chr17:26231022-26231222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-223
               
               
               Cow position:chr17:9965959-9965760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 170

               
               
               Conread position:25-183
               
               
               Cow position:chr17:6329184-6329338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:25-183
               
               
               Cow position:chr17:30750111-30750274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr17:8986536-8986373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr17:21777795-21777956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr17:26789488-26789643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:25-186
               
               
               Cow position:chr17:10414567-10414722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:25-186
               
               
               Cow position:chr17:10630914-10630752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:25-191
               
               
               Cow position:chr17:6318034-6317873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):23, 100

               
               
               Conread position:25-195
               
               
               Cow position:chr17:20359181-20359354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-196
               
               
               Cow position:chr17:1466348-1466177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:25-200
               
               
               Cow position:chr17:5011907-5012084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr17:7037555-7037376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr17:19898959-19899144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr17:25342672-25342496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-201
               
               
               Cow position:chr17:26183413-26183592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-202
               
               
               Cow position:chr17:15883740-15883920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-203
               
               
               Cow position:chr17:21363450-21363629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 141

               
               
               Conread position:25-204
               
               
               Cow position:chr17:1035528-1035347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr17:11921096-11920917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:25-204
               
               
               Cow position:chr17:26721136-26720955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr17:27647057-27646879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 85

               
               
               Conread position:25-207
               
               
               Cow position:chr17:11056091-11055918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-212
               
               
               Cow position:chr17:3364660-3364844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:25-214
               
               
               Cow position:chr17:4699645-4699455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:25-214
               
               
               Cow position:chr17:12346770-12346579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):41, 174

               
               
               Conread position:25-214
               
               
               Cow position:chr17:16371325-16371514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 115

               
               
               Conread position:25-214
               
               
               Cow position:chr17:20913179-20913363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:25-214
               
               
               Cow position:chr17:28982250-28982432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 23

               
               
               Conread position:25-214
               
               
               Cow position:chr17:30108508-30108686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:25-214
               
               
               Cow position:chr17:35617290-35617097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:25-214
               
               
               Cow position:chr17:37095992-37096186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:25-215
               
               
               Cow position:chr17:43323476-43323285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-216
               
               
               Cow position:chr17:10222141-10221949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:25-216
               
               
               Cow position:chr17:10477871-10478062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-217
               
               
               Cow position:chr17:20929310-20929504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 184

               
               
               Conread position:25-217
               
               
               Cow position:chr17:21599614-21599421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-221
               
               
               Cow position:chr17:18720378-18720188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:25-222
               
               
               Cow position:chr17:32220817-32220617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:25-223
               
               
               Cow position:chr17:7959250-7959441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 98

               
               
               Conread position:25-223
               
               
               Cow position:chr17:11839791-11839990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):56, 101

               
               
               Conread position:25-224
               
               
               Cow position:chr17:18708542-18708356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:25-225
               
               
               Cow position:chr17:27795723-27795925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:25-226
               
               
               Cow position:chr17:28795914-28795715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:25-227
               
               
               Cow position:chr17:36178973-36178780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:27-204
               
               
               Cow position:chr17:6767190-6767012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 169

               
               
               Conread position:27-216
               
               
               Cow position:chr17:31559640-31559830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 79

               
               
               Conread position:27-225
               
               
               Cow position:chr17:36814432-36814637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr17:6004870-6005028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:28-192
               
               
               Cow position:chr17:31754703-31754537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:28-201
               
               
               Cow position:chr17:37973995-37973815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 176

               
               
               Conread position:28-204
               
               
               Cow position:chr17:8598038-8597862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):28, 98

               
               
               Conread position:28-204
               
               
               Cow position:chr17:17035021-17035191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-204
               
               
               Cow position:chr17:31480966-31480784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:28-204
               
               
               Cow position:chr17:40673442-40673620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-205
               
               
               Cow position:chr17:5421750-5421929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-206
               
               
               Cow position:chr17:25128281-25128106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:28-207
               
               
               Cow position:chr17:25473208-25473033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:28-211
               
               
               Cow position:chr17:9824741-9824919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:28-211
               
               
               Cow position:chr17:26836695-26836511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 118

               
               
               Conread position:28-212
               
               
               Cow position:chr17:26225099-26225282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-212
               
               
               Cow position:chr17:28465496-28465681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:28-213
               
               
               Cow position:chr17:21466191-21466003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 172

               
               
               Conread position:28-213
               
               
               Cow position:chr17:24587696-24587880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-214
               
               
               Cow position:chr17:1314002-1314194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr17:5780060-5780249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr17:13976639-13976454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:28-214
               
               
               Cow position:chr17:32989548-32989730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:28-214
               
               
               Cow position:chr17:38125120-38124931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr17:32333019-32332836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:28-216
               
               
               Cow position:chr17:6268808-6268617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr17:17044260-17044076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:28-217
               
               
               Cow position:chr17:8663576-8663765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 53

               
               
               Conread position:28-217
               
               
               Cow position:chr17:13414296-13414104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr17:35432431-35432623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr17:36454709-36454518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:28-218
               
               
               Cow position:chr17:14050135-14049945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 64

               
               
               Conread position:28-219
               
               
               Cow position:chr17:5730988-5731181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-219
               
               
               Cow position:chr17:11381655-11381463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-219
               
               
               Cow position:chr17:21718925-21718737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:28-219
               
               
               Cow position:chr17:25885901-25886097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr17:5013004-5012808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 162

               
               
               Conread position:28-220
               
               
               Cow position:chr17:13319775-13319969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 142

               
               
               Conread position:28-220
               
               
               Cow position:chr17:32027380-32027184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr17:3153502-3153303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:28-222
               
               
               Cow position:chr17:20881737-20881548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:28-223
               
               
               Cow position:chr17:21039629-21039820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-223
               
               
               Cow position:chr17:33140454-33140656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr17:40718750-40718553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr17:24149256-24149456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr17:24928547-24928747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr17:34772578-34772775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:28-226
               
               
               Cow position:chr17:16438649-16438447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 157

               
               
               Conread position:28-227
               
               
               Cow position:chr17:36522975-36522772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-232
               
               
               Cow position:chr17:32138352-32138141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:28-235
               
               
               Cow position:chr17:38615032-38615242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 171

               
               
               Conread position:29-213
               
               
               Cow position:chr17:5048003-5048186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 147

               
               
               Conread position:29-216
               
               
               Cow position:chr17:11468600-11468794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:29-222
               
               
               Cow position:chr17:30728577-30728770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:29-223
               
               
               Cow position:chr17:36431969-36432166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-224
               
               
               Cow position:chr17:36468118-36467924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):35, 125

               
               
               Conread position:31-205
               
               
               Cow position:chr17:9078146-9077965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:33-215
               
               
               Cow position:chr17:3467829-3468009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:35-191
               
               
               Cow position:chr17:17772348-17772184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:35-219
               
               
               Cow position:chr17:6761769-6761596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:35-219
               
               
               Cow position:chr17:9260533-9260352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 81

               
               
               Conread position:35-220
               
               
               Cow position:chr17:11269696-11269511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 43

               
               
               Conread position:35-220
               
               
               Cow position:chr17:34343188-34343009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 8

               
               
               Conread position:35-225
               
               
               Cow position:chr17:41009351-41009534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:36-200
               
               
               Cow position:chr17:11432591-11432757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr17:27258502-27258674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:36-204
               
               
               Cow position:chr17:35193740-35193570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr17:27162978-27163159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-215
               
               
               Cow position:chr17:38169665-38169486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:36-217
               
               
               Cow position:chr17:37552947-37552763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-218
               
               
               Cow position:chr17:30359538-30359710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 70

               
               
               Conread position:36-218
               
               
               Cow position:chr17:35921968-35922152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):6, 174

               
               
               Conread position:36-225
               
               
               Cow position:chr17:21236602-21236793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:36-226
               
               
               Cow position:chr17:17782135-17782319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:37-212
               
               
               Cow position:chr17:20836171-20836345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):27, 69

               
               
               Conread position:37-218
               
               
               Cow position:chr17:24895153-24895336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):5, 136

               
               
               Conread position:37-223
               
               
               Cow position:chr17:36943449-36943629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:39-199
               
               
               Cow position:chr17:29356157-29356001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 85

               
               
               Conread position:39-219
               
               
               Cow position:chr17:36448858-36448675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):9, 13

               
               
               Conread position:40-213
               
               
               Cow position:chr17:27565643-27565818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 157

               
               
               Conread position:40-213
               
               
               Cow position:chr17:34187960-34188134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:40-218
               
               
               Cow position:chr17:34860462-34860632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):24, 95

               
               
               Conread position:40-219
               
               
               Cow position:chr17:26631727-26631547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 11

               
               
               Conread position:40-219
               
               
               Cow position:chr17:26849686-26849506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 130

               
               
               Conread position:40-220
               
               
               Cow position:chr17:35995629-35995446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 152

               
               
               Conread position:40-223
               
               
               Cow position:chr17:36574039-36573855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 159

               
               
               Conread position:40-230
               
               
               Cow position:chr17:24877188-24877376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 130

               
               
               Conread position:41-191
               
               
               Cow position:chr17:32143171-32143323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:41-220
               
               
               Cow position:chr17:32419031-32418856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:41-226
               
               
               Cow position:chr17:10016364-10016545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 50

               
               
               Conread position:42-192
               
               
               Cow position:chr17:21015072-21015222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:43-225
               
               
               Cow position:chr17:31736419-31736233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:48-186
               
               
               Cow position:chr17:22773035-22772893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:48-207
               
               
               Cow position:chr17:1783530-1783377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):18, 44

               
               
               Conread position:50-199
               
               
               Cow position:chr17:35457721-35457576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:50-208
               
               
               Cow position:chr17:17266039-17265878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:50-208
               
               
               Cow position:chr17:33271569-33271421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:50-211
               
               
               Cow position:chr17:20157701-20157862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:50-220
               
               
               Cow position:chr17:18673946-18673775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):15, 153

               
               
               Conread position:50-225
               
               
               Cow position:chr17:21075868-21076041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 49

               
               
               Conread position:50-225
               
               
               Cow position:chr17:31985847-31985679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:56-219
               
               
               Cow position:chr17:26562040-26561879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):9, 56

               
               
               Conread position:58-224
               
               
               Cow position:chr17:35935261-35935427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 66

               
               
               Conread position:62-192
               
               
               Cow position:chr17:15334388-15334258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr17:25608412-25608274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-203
               
               
               Cow position:chr17:12249128-12248988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-208
               
               
               Cow position:chr17:30156313-30156169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr17:22128030-22128176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr17:3883637-3883488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr17:10820877-10820732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr17:4264331-4264484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr17:5762046-5761893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):60, 143

               
               
               Conread position:62-218
               
               
               Cow position:chr17:24797894-24797733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):35, 43

               
               
               Conread position:62-220
               
               
               Cow position:chr17:10037515-10037671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr17:33067462-33067306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr17:7276385-7276545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr17:7659496-7659332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):53, 114

               
               
               Conread position:62-235
               
               
               Cow position:chr17:27581082-27581257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):64, 169

               
               
               Conread position:63-205
               
               
               Cow position:chr17:7864933-7865073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:63-207
               
               
               Cow position:chr17:37513997-37513851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 112

               
               
               Conread position:63-213
               
               
               Cow position:chr17:21973021-21972869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:63-214
               
               
               Cow position:chr17:10461109-10461263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):62, 137

               
               
               Conread position:63-219
               
               
               Cow position:chr17:14668611-14668763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:64-198
               
               
               Cow position:chr17:39253537-39253403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-206
               
               
               Cow position:chr17:20847177-20847316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:64-218
               
               
               Cow position:chr17:9929484-9929637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):143, 29

               
               
               Conread position:65-214
               
               
               Cow position:chr17:952262-952410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:68-185
               
               
               Cow position:chr17:3918881-3918998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-204
               
               
               Cow position:chr17:20887133-20887270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:71-222
               
               
               Cow position:chr17:4271246-4271095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 140

               
               
               Conread position:74-221
               
               
               Cow position:chr17:35172982-35173124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:75-192
               
               
               Cow position:chr17:24826965-24826848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-221
               
               
               Cow position:chr17:7758170-7758024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):6, 39

               
               
               Conread position:75-223
               
               
               Cow position:chr17:39904594-39904743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:77-215
               
               
               Cow position:chr17:3517595-3517460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:82-209
               
               
               Cow position:chr17:25718269-25718393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:82-215
               
               
               Cow position:chr17:12187818-12187949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:83-228
               
               
               Cow position:chr17:11664452-11664312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 5

               
               
               Conread position:84-212
               
               
               Cow position:chr17:42744620-42744746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:84-218
               
               
               Cow position:chr17:34035745-34035613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:85-204
               
               
               Cow position:chr17:44797807-44797926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-214
               
               
               Cow position:chr17:26867584-26867455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 83

               
               
               Conread position:85-217
               
               
               Cow position:chr17:29975579-29975706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:85-220
               
               
               Cow position:chr17:36460624-36460490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 106

               
               
               Conread position:87-204
               
               
               Cow position:chr17:11105814-11105931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:88-221
               
               
               Cow position:chr17:36615542-36615411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:88-224
               
               
               Cow position:chr17:11825705-11825842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:96-205
               
               
               Cow position:chr17:9287798-9287688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:99-224
               
               
               Cow position:chr17:10410774-10410898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 65

               
               
               Conread position:100-223
               
               
               Cow position:chr17:5550744-5550862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:114-219
               
               
               Cow position:chr17:12958254-12958152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr18:5647782-5647963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-199
               
               
               Cow position:chr18:30341211-30341015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:1-200
               
               
               Cow position:chr18:4556197-4555995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:1-204
               
               
               Cow position:chr18:8208460-8208251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:1-204
               
               
               Cow position:chr18:50359301-50359498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-205
               
               
               Cow position:chr18:51643396-51643196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:1-207
               
               
               Cow position:chr18:25757342-25757138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:1-211
               
               
               Cow position:chr18:7109099-7109312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:1-215
               
               
               Cow position:chr18:56463759-56463544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:1-217
               
               
               Cow position:chr18:4851510-4851297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):65, 15

               
               
               Conread position:1-218
               
               
               Cow position:chr18:37188028-37187811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):12, 196

               
               
               Conread position:1-219
               
               
               Cow position:chr18:49970684-49970465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):12, 169

               
               
               Conread position:1-222
               
               
               Cow position:chr18:47486013-47486234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):12, 31

               
               
               Conread position:1-223
               
               
               Cow position:chr18:41702806-41703023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 13

               
               
               Conread position:1-225
               
               
               Cow position:chr18:56155490-56155710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 58

               
               
               Conread position:2-214
               
               
               Cow position:chr18:33756987-33757195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 88

               
               
               Conread position:2-218
               
               
               Cow position:chr18:47416974-47417189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:3-165
               
               
               Cow position:chr18:2774171-2774002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:3-185
               
               
               Cow position:chr18:48112995-48112812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):17, 104

               
               
               Conread position:3-189
               
               
               Cow position:chr18:24672209-24672400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr18:14172240-14172040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 111

               
               
               Conread position:3-204
               
               
               Cow position:chr18:27078835-27079039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:3-212
               
               
               Cow position:chr18:21782658-21782864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:3-212
               
               
               Cow position:chr18:38211128-38211338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 22

               
               
               Conread position:3-213
               
               
               Cow position:chr18:16545495-16545283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 189

               
               
               Conread position:3-213
               
               
               Cow position:chr18:22120918-22120703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:3-214
               
               
               Cow position:chr18:135687-135478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:3-217
               
               
               Cow position:chr18:46277317-46277096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:3-219
               
               
               Cow position:chr18:43283789-43283570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:3-220
               
               
               Cow position:chr18:19868291-19868069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr18:4668531-4668317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:3-224
               
               
               Cow position:chr18:11233383-11233616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:4-185
               
               
               Cow position:chr18:42427588-42427770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):22, 123

               
               
               Conread position:4-191
               
               
               Cow position:chr18:6399664-6399462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):22, 156

               
               
               Conread position:4-199
               
               
               Cow position:chr18:12058970-12059161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:4-199
               
               
               Cow position:chr18:46048726-46048922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:4-201
               
               
               Cow position:chr18:30673459-30673271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-203
               
               
               Cow position:chr18:44909027-44909224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):60, 109

               
               
               Conread position:4-204
               
               
               Cow position:chr18:5632236-5632437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:4-208
               
               
               Cow position:chr18:1144215-1144015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:4-215
               
               
               Cow position:chr18:728003-728203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:4-217
               
               
               Cow position:chr18:7965206-7965418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:4-217
               
               
               Cow position:chr18:31159305-31159089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:4-218
               
               
               Cow position:chr18:10214221-10214007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:4-218
               
               
               Cow position:chr18:36098344-36098543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:4-219
               
               
               Cow position:chr18:23810146-23809935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:4-220
               
               
               Cow position:chr18:4495912-4495701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:4-220
               
               
               Cow position:chr18:51405938-51405731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):22, 67

               
               
               Conread position:4-220
               
               
               Cow position:chr18:52684633-52684412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-223
               
               
               Cow position:chr18:33502415-33502197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):65, 94

               
               
               Conread position:4-223
               
               
               Cow position:chr18:52682767-52682542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:4-224
               
               
               Cow position:chr18:1931486-1931269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 124

               
               
               Conread position:4-224
               
               
               Cow position:chr18:23162861-23163085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):60, 23

               
               
               Conread position:4-229
               
               
               Cow position:chr18:247720-247499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:5-206
               
               
               Cow position:chr18:43056868-43057068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:5-218
               
               
               Cow position:chr18:32600021-32600242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 157

               
               
               Conread position:5-222
               
               
               Cow position:chr18:19613881-19614099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):26, 164

               
               
               Conread position:5-223
               
               
               Cow position:chr18:53053265-53053039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):20, 208

               
               
               Conread position:6-167
               
               
               Cow position:chr18:19157850-19158013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:6-202
               
               
               Cow position:chr18:56183529-56183328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 13

               
               
               Conread position:6-204
               
               
               Cow position:chr18:7956118-7956322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):20, 165

               
               
               Conread position:6-204
               
               
               Cow position:chr18:51757064-51757267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:6-207
               
               
               Cow position:chr18:50004732-50004530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 114

               
               
               Conread position:6-212
               
               
               Cow position:chr18:11867311-11867517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 110

               
               
               Conread position:6-215
               
               
               Cow position:chr18:16659456-16659246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:6-224
               
               
               Cow position:chr18:2108221-2108441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:6-232
               
               
               Cow position:chr18:31969-32192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:7-218
               
               
               Cow position:chr18:18664398-18664178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:8-197
               
               
               Cow position:chr18:3211852-3212046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):7, 118

               
               
               Conread position:8-212
               
               
               Cow position:chr18:19962167-19961954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:8-216
               
               
               Cow position:chr18:35795250-35795036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 97

               
               
               Conread position:8-219
               
               
               Cow position:chr18:42293081-42292874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:8-220
               
               
               Cow position:chr18:42290353-42290145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 12

               
               
               Conread position:9-191
               
               
               Cow position:chr18:29798301-29798123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 120

               
               
               Conread position:10-205
               
               
               Cow position:chr18:52251883-52251680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:164
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-219
               
               
               Cow position:chr18:53795459-53795671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 203

               
               
               Conread position:11-227
               
               
               Cow position:chr18:14587252-14587471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:14-204
               
               
               Cow position:chr18:39623784-39623977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:16-198
               
               
               Cow position:chr18:56181469-56181291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:16-201
               
               
               Cow position:chr18:39710093-39710285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:16-220
               
               
               Cow position:chr18:21751365-21751566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:18-185
               
               
               Cow position:chr18:4715620-4715457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):30, 34

               
               
               Conread position:18-214
               
               
               Cow position:chr18:21251976-21252169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):46, 88

               
               
               Conread position:19-199
               
               
               Cow position:chr18:3180400-3180578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:19-199
               
               
               Cow position:chr18:11657646-11657827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:19-199
               
               
               Cow position:chr18:49281074-49280895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 155

               
               
               Conread position:19-204
               
               
               Cow position:chr18:23898407-23898585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:19-204
               
               
               Cow position:chr18:24719302-24719482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:19-204
               
               
               Cow position:chr18:49603054-49602870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 96

               
               
               Conread position:19-205
               
               
               Cow position:chr18:11754119-11754301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 146

               
               
               Conread position:19-208
               
               
               Cow position:chr18:46276313-46276122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-210
               
               
               Cow position:chr18:3158608-3158406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 195

               
               
               Conread position:19-213
               
               
               Cow position:chr18:2144560-2144751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:19-213
               
               
               Cow position:chr18:43950815-43951011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:19-214
               
               
               Cow position:chr18:19809693-19809500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 105

               
               
               Conread position:19-214
               
               
               Cow position:chr18:23380120-23380309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:19-214
               
               
               Cow position:chr18:45573369-45573563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 110

               
               
               Conread position:19-216
               
               
               Cow position:chr18:23447072-23446880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):47, 95

               
               
               Conread position:19-219
               
               
               Cow position:chr18:34490269-34490469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):28, 94

               
               
               Conread position:19-220
               
               
               Cow position:chr18:12584850-12584656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:19-223
               
               
               Cow position:chr18:6005510-6005309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:19-223
               
               
               Cow position:chr18:24508246-24508043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:19-223
               
               
               Cow position:chr18:46880174-46879969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:19-225
               
               
               Cow position:chr18:50566890-50567103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:19-226
               
               
               Cow position:chr18:39811594-39811388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 86

               
               
               Conread position:19-229
               
               
               Cow position:chr18:19765178-19765385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 105

               
               
               Conread position:20-185
               
               
               Cow position:chr18:26998876-26999043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:20-200
               
               
               Cow position:chr18:20271022-20270842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:20-223
               
               
               Cow position:chr18:22045423-22045218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:24-183
               
               
               Cow position:chr18:7134270-7134433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:24-186
               
               
               Cow position:chr18:3098038-3097870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:24-192
               
               
               Cow position:chr18:49161309-49161139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 71

               
               
               Conread position:24-199
               
               
               Cow position:chr18:49440835-49441011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:24-216
               
               
               Cow position:chr18:23941630-23941432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 179

               
               
               Conread position:24-218
               
               
               Cow position:chr18:25601330-25601141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 64

               
               
               Conread position:24-220
               
               
               Cow position:chr18:4718253-4718450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 150

               
               
               Conread position:25-165
               
               
               Cow position:chr18:47920741-47920883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-169
               
               
               Cow position:chr18:23821837-23821691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-180
               
               
               Cow position:chr18:24759661-24759510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 91

               
               
               Conread position:25-183
               
               
               Cow position:chr18:35874073-35874230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 110

               
               
               Conread position:25-186
               
               
               Cow position:chr18:55499067-55499225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:25-188
               
               
               Cow position:chr18:26586619-26586455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:25-189
               
               
               Cow position:chr18:40047503-40047346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 30

               
               
               Conread position:25-192
               
               
               Cow position:chr18:4758037-4757872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:25-192
               
               
               Cow position:chr18:24022613-24022776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:25-199
               
               
               Cow position:chr18:11691413-11691238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-204
               
               
               Cow position:chr18:697222-697046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr18:39460215-39460389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:25-207
               
               
               Cow position:chr18:39662774-39662956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):85, 177

               
               
               Conread position:25-208
               
               
               Cow position:chr18:28810364-28810178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 10

               
               
               Conread position:25-208
               
               
               Cow position:chr18:37303147-37303331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 109

               
               
               Conread position:25-209
               
               
               Cow position:chr18:29683479-29683290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-212
               
               
               Cow position:chr18:11330214-11330404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-212
               
               
               Cow position:chr18:44917752-44917935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:25-213
               
               
               Cow position:chr18:1954594-1954400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 129

               
               
               Conread position:25-213
               
               
               Cow position:chr18:37414974-37414786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 144

               
               
               Conread position:25-214
               
               
               Cow position:chr18:29188381-29188577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 179

               
               
               Conread position:25-214
               
               
               Cow position:chr18:39860776-39860595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):169, 24

               
               
               Conread position:25-215
               
               
               Cow position:chr18:23615881-23615692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:25-215
               
               
               Cow position:chr18:45185867-45186059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 169

               
               
               Conread position:25-216
               
               
               Cow position:chr18:5189698-5189509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:154
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):40, 123

               
               
               Conread position:25-218
               
               
               Cow position:chr18:23648917-23649114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-218
               
               
               Cow position:chr18:35857929-35857735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:25-219
               
               
               Cow position:chr18:4000341-4000538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr18:18918963-18918776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:25-219
               
               
               Cow position:chr18:26262218-26262025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:25-220
               
               
               Cow position:chr18:24946082-24946269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:25-223
               
               
               Cow position:chr18:21528642-21528840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:25-226
               
               
               Cow position:chr18:39115123-39114923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-226
               
               
               Cow position:chr18:49040621-49040411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 185

               
               
               Conread position:25-228
               
               
               Cow position:chr18:52382899-52383107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-229
               
               
               Cow position:chr18:50974299-50974082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:26-214
               
               
               Cow position:chr18:21260180-21260369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 6

               
               
               Conread position:26-214
               
               
               Cow position:chr18:47175385-47175195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:26-223
               
               
               Cow position:chr18:19677392-19677585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):180, 32

               
               
               Conread position:26-223
               
               
               Cow position:chr18:21355296-21355095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:26-233
               
               
               Cow position:chr18:19688020-19688231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr18:4489910-4489748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-198
               
               
               Cow position:chr18:33896420-33896247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:28-199
               
               
               Cow position:chr18:38363471-38363644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr18:38937819-38937988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:28-203
               
               
               Cow position:chr18:33158940-33159115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-203
               
               
               Cow position:chr18:47392404-47392581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr18:346500-346322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr18:10051745-10051919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:28-204
               
               
               Cow position:chr18:22790090-22789917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:28-204
               
               
               Cow position:chr18:43472199-43472377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr18:46985572-46985394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr18:51383399-51383227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:28-212
               
               
               Cow position:chr18:14577026-14577208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 142

               
               
               Conread position:28-213
               
               
               Cow position:chr18:21401303-21401115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr18:8880152-8880340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:28-214
               
               
               Cow position:chr18:14874550-14874739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr18:16381856-16382044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr18:42479588-42479400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:28-214
               
               
               Cow position:chr18:51644020-51643832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr18:55549727-55549916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr18:24266409-24266217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:28-216
               
               
               Cow position:chr18:22328141-22328332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr18:12273656-12273838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:28-217
               
               
               Cow position:chr18:14201245-14201053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr18:35837625-35837442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):162, 37

               
               
               Conread position:28-218
               
               
               Cow position:chr18:4264399-4264209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):32, 91

               
               
               Conread position:28-218
               
               
               Cow position:chr18:51827279-51827467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):173, 37

               
               
               Conread position:28-219
               
               
               Cow position:chr18:18962423-18962616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 177

               
               
               Conread position:28-220
               
               
               Cow position:chr18:5600634-5600830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr18:7966240-7966433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 138

               
               
               Conread position:28-220
               
               
               Cow position:chr18:22905960-22905757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 135

               
               
               Conread position:28-220
               
               
               Cow position:chr18:31557162-31556968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:28-220
               
               
               Cow position:chr18:45898890-45899084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr18:46880707-46880518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:28-221
               
               
               Cow position:chr18:29371865-29372059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:28-221
               
               
               Cow position:chr18:50632444-50632261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 72

               
               
               Conread position:28-221
               
               
               Cow position:chr18:55692814-55693009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):38, 113

               
               
               Conread position:28-222
               
               
               Cow position:chr18:17195347-17195155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:28-222
               
               
               Cow position:chr18:17390995-17390801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:28-223
               
               
               Cow position:chr18:12775786-12775587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr18:23169576-23169775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr18:27637490-27637684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:28-223
               
               
               Cow position:chr18:50948613-50948812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-226
               
               
               Cow position:chr18:17649740-17649543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:28-226
               
               
               Cow position:chr18:30225532-30225333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:28-226
               
               
               Cow position:chr18:53093020-53092818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 123

               
               
               Conread position:29-204
               
               
               Cow position:chr18:36734564-36734387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-223
               
               
               Cow position:chr18:7447535-7447339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:30-223
               
               
               Cow position:chr18:34023222-34023419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:31-217
               
               
               Cow position:chr18:10117739-10117920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 86

               
               
               Conread position:31-218
               
               
               Cow position:chr18:16812153-16812343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:32-204
               
               
               Cow position:chr18:36501076-36500909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 83

               
               
               Conread position:32-223
               
               
               Cow position:chr18:3709232-3709422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):35, 56

               
               
               Conread position:35-217
               
               
               Cow position:chr18:55747691-55747872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):30, 169

               
               
               Conread position:35-218
               
               
               Cow position:chr18:14871599-14871417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:35-223
               
               
               Cow position:chr18:19796918-19796730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 157

               
               
               Conread position:35-228
               
               
               Cow position:chr18:238111-237919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):30, 157

               
               
               Conread position:35-231
               
               
               Cow position:chr18:44514091-44514290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):30, 192

               
               
               Conread position:36-186
               
               
               Cow position:chr18:41253546-41253698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:36-199
               
               
               Cow position:chr18:44044337-44044172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr18:46048067-46048237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 153

               
               
               Conread position:36-212
               
               
               Cow position:chr18:39689793-39689972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr18:9642878-9642692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-219
               
               
               Cow position:chr18:36190996-36190812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):27, 176

               
               
               Conread position:36-220
               
               
               Cow position:chr18:1571231-1571051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:36-221
               
               
               Cow position:chr18:22703434-22703625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-222
               
               
               Cow position:chr18:21969799-21969610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-223
               
               
               Cow position:chr18:9029616-9029805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:36-223
               
               
               Cow position:chr18:44137498-44137688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:36-225
               
               
               Cow position:chr18:21051077-21050897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:36-232
               
               
               Cow position:chr18:9756084-9756284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 147

               
               
               Conread position:37-217
               
               
               Cow position:chr18:2773386-2773204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):5, 56

               
               
               Conread position:37-217
               
               
               Cow position:chr18:2776889-2776707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 56

               
               
               Conread position:37-217
               
               
               Cow position:chr18:10668340-10668520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 123

               
               
               Conread position:37-217
               
               
               Cow position:chr18:20998409-20998226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):5, 164

               
               
               Conread position:39-199
               
               
               Cow position:chr18:2576691-2576525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-204
               
               
               Cow position:chr18:16313388-16313549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):27, 87

               
               
               Conread position:39-214
               
               
               Cow position:chr18:15351721-15351549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:40-186
               
               
               Cow position:chr18:19143962-19143815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:40-204
               
               
               Cow position:chr18:1859126-1858960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-204
               
               
               Cow position:chr18:54572280-54572113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:40-213
               
               
               Cow position:chr18:10065511-10065339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:40-221
               
               
               Cow position:chr18:35950045-35950235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:40-222
               
               
               Cow position:chr18:32051591-32051769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):70, 124

               
               
               Conread position:42-224
               
               
               Cow position:chr18:34389371-34389186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):23, 41

               
               
               Conread position:43-186
               
               
               Cow position:chr18:23947632-23947777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:43-222
               
               
               Cow position:chr18:45903884-45903708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):24, 83

               
               
               Conread position:50-191
               
               
               Cow position:chr18:28540092-28539950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 116

               
               
               Conread position:50-204
               
               
               Cow position:chr18:19385973-19385818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 148

               
               
               Conread position:50-204
               
               
               Cow position:chr18:43822936-43822780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-219
               
               
               Cow position:chr18:40281079-40280907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-223
               
               
               Cow position:chr18:37690170-37690339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 63

               
               
               Conread position:50-226
               
               
               Cow position:chr18:30676639-30676458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):72, 152

               
               
               Conread position:51-217
               
               
               Cow position:chr18:20391227-20391390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):22, 9

               
               
               Conread position:51-223
               
               
               Cow position:chr18:18815950-18816127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:51-225
               
               
               Cow position:chr18:7487253-7487429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:54-181
               
               
               Cow position:chr18:16856584-16856711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):95, 60

               
               
               Conread position:58-201
               
               
               Cow position:chr18:32873620-32873765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):7, 141

               
               
               Conread position:60-222
               
               
               Cow position:chr18:51396465-51396309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:62-179
               
               
               Cow position:chr18:31727610-31727497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:62-197
               
               
               Cow position:chr18:35235989-35235854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:62-198
               
               
               Cow position:chr18:50959522-50959656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr18:23653084-23652943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:62-201
               
               
               Cow position:chr18:36296708-36296579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:62-203
               
               
               Cow position:chr18:16760553-16760694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):44, 135

               
               
               Conread position:62-214
               
               
               Cow position:chr18:35171382-35171530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr18:26355011-26354856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr18:8220141-8219985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):140, 42

               
               
               Conread position:62-218
               
               
               Cow position:chr18:22740128-22739973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr18:29945566-29945726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):26, 108

               
               
               Conread position:62-223
               
               
               Cow position:chr18:34691330-34691494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:62-224
               
               
               Cow position:chr18:1662551-1662390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-227
               
               
               Cow position:chr18:33364246-33364405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 66

               
               
               Conread position:63-183
               
               
               Cow position:chr18:32318089-32317969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:63-220
               
               
               Cow position:chr18:17756910-17756753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:63-224
               
               
               Cow position:chr18:32253475-32253316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 41

               
               
               Conread position:63-228
               
               
               Cow position:chr18:22180742-22180584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:64-214
               
               
               Cow position:chr18:3164479-3164332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):8, 100

               
               
               Conread position:64-216
               
               
               Cow position:chr18:4546417-4546269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:64-225
               
               
               Cow position:chr18:37756429-37756589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:64-231
               
               
               Cow position:chr18:45453741-45453908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-199
               
               
               Cow position:chr18:641275-641147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:67-212
               
               
               Cow position:chr18:1735559-1735419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:68-216
               
               
               Cow position:chr18:21878427-21878269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:68-228
               
               
               Cow position:chr18:15340454-15340298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 45

               
               
               Conread position:71-198
               
               
               Cow position:chr18:38669785-38669656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:75-187
               
               
               Cow position:chr18:55710857-55710969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-203
               
               
               Cow position:chr18:37031876-37032003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:75-213
               
               
               Cow position:chr18:51147719-51147583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:75-216
               
               
               Cow position:chr18:32960124-32960264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:81-219
               
               
               Cow position:chr18:39700527-39700388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:82-223
               
               
               Cow position:chr18:30295552-30295415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:84-219
               
               
               Cow position:chr18:35802414-35802282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:84-220
               
               
               Cow position:chr18:36422671-36422534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:85-199
               
               
               Cow position:chr18:18956824-18956714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:88-204
               
               
               Cow position:chr18:37160541-37160425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:90-225
               
               
               Cow position:chr18:35594780-35594645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):69, 14

               
               
               Conread position:91-223
               
               
               Cow position:chr18:3412424-3412556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:92-204
               
               
               Cow position:chr18:20226186-20226295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 32

               
               
               Conread position:92-213
               
               
               Cow position:chr18:40028283-40028408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:92-223
               
               
               Cow position:chr18:18597030-18596903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:97-228
               
               
               Cow position:chr18:7687531-7687401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:103-209
               
               
               Cow position:chr18:47868668-47868772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:108-220
               
               
               Cow position:chr18:40035474-40035361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:115-222
               
               
               Cow position:chr18:40476094-40475986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1-147
               
               
               Cow position:chr19:34819197-34819047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 128

               
               
               Conread position:1-191
               
               
               Cow position:chr19:26976076-26975889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:1-203
               
               
               Cow position:chr19:51285631-51285829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:1-204
               
               
               Cow position:chr19:11816732-11816528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:1-208
               
               
               Cow position:chr19:49290463-49290261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 12

               
               
               Conread position:1-214
               
               
               Cow position:chr19:52356243-52356456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 115

               
               
               Conread position:1-217
               
               
               Cow position:chr19:3857915-3857702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:1-218
               
               
               Cow position:chr19:12747785-12747564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):14, 167

               
               
               Conread position:1-218
               
               
               Cow position:chr19:30227511-30227733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):12, 184

               
               
               Conread position:1-222
               
               
               Cow position:chr19:41024215-41024431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-223
               
               
               Cow position:chr19:24137254-24137475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:1-240
               
               
               Cow position:chr19:51307137-51307381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:2-223
               
               
               Cow position:chr19:26167920-26167701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:3-185
               
               
               Cow position:chr19:21816956-21817142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr19:24453522-24453329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr19:23831340-23831538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:3-201
               
               
               Cow position:chr19:14253621-14253827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-203
               
               
               Cow position:chr19:55247622-55247827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 116

               
               
               Conread position:3-204
               
               
               Cow position:chr19:8864738-8864938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-204
               
               
               Cow position:chr19:20666081-20665872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr19:33747839-33748047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 179

               
               
               Conread position:3-204
               
               
               Cow position:chr19:55957579-55957373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:3-208
               
               
               Cow position:chr19:18505179-18504967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):20, 129

               
               
               Conread position:3-211
               
               
               Cow position:chr19:10574280-10574064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-212
               
               
               Cow position:chr19:38111459-38111671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:3-213
               
               
               Cow position:chr19:55394890-55395108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:3-214
               
               
               Cow position:chr19:12103383-12103178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:3-217
               
               
               Cow position:chr19:25382698-25382474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr19:2068256-2068474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:3-218
               
               
               Cow position:chr19:4477129-4476911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):20, 199

               
               
               Conread position:3-219
               
               
               Cow position:chr19:28554357-28554141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 87

               
               
               Conread position:3-220
               
               
               Cow position:chr19:6417602-6417820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:3-222
               
               
               Cow position:chr19:16032707-16032933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:3-222
               
               
               Cow position:chr19:39664587-39664365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 166

               
               
               Conread position:3-223
               
               
               Cow position:chr19:39795179-39795402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:3-225
               
               
               Cow position:chr19:25673533-25673308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:3-225
               
               
               Cow position:chr19:28924746-28924976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):23, 122

               
               
               Conread position:3-227
               
               
               Cow position:chr19:51905532-51905765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-229
               
               
               Cow position:chr19:25167107-25166876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 166

               
               
               Conread position:4-191
               
               
               Cow position:chr19:39586116-39585922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-195
               
               
               Cow position:chr19:6688009-6687811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-199
               
               
               Cow position:chr19:43058524-43058727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:4-204
               
               
               Cow position:chr19:34166361-34166563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:4-207
               
               
               Cow position:chr19:2221085-2220871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-213
               
               
               Cow position:chr19:17354850-17355061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:4-214
               
               
               Cow position:chr19:13267198-13267000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:4-215
               
               
               Cow position:chr19:729752-729541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:4-215
               
               
               Cow position:chr19:30007182-30007393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):21, 81

               
               
               Conread position:4-217
               
               
               Cow position:chr19:8185193-8185411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:4-217
               
               
               Cow position:chr19:12061064-12061278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):27, 18

               
               
               Conread position:4-218
               
               
               Cow position:chr19:36845240-36845452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):22, 146

               
               
               Conread position:4-219
               
               
               Cow position:chr19:10877219-10877439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 136

               
               
               Conread position:4-221
               
               
               Cow position:chr19:35870789-35871003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):61, 22

               
               
               Conread position:4-223
               
               
               Cow position:chr19:21176745-21176528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-225
               
               
               Cow position:chr19:11191626-11191403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 120

               
               
               Conread position:4-228
               
               
               Cow position:chr19:32754523-32754747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):63, 213

               
               
               Conread position:5-219
               
               
               Cow position:chr19:13121283-13121076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:5-222
               
               
               Cow position:chr19:2577557-2577771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:5-223
               
               
               Cow position:chr19:6093481-6093689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):189, 60

               
               
               Conread position:5-223
               
               
               Cow position:chr19:6797291-6797065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:6-184
               
               
               Cow position:chr19:55590229-55590410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:6-204
               
               
               Cow position:chr19:11211286-11211080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:6-204
               
               
               Cow position:chr19:25041245-25041052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):55, 19

               
               
               Conread position:6-205
               
               
               Cow position:chr19:37109606-37109412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):30, 19

               
               
               Conread position:6-219
               
               
               Cow position:chr19:43839-44054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):7, 124

               
               
               Conread position:6-220
               
               
               Cow position:chr19:1553704-1553919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 164

               
               
               Conread position:8-185
               
               
               Cow position:chr19:25410846-25410678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 17

               
               
               Conread position:8-199
               
               
               Cow position:chr19:4459444-4459252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:8-223
               
               
               Cow position:chr19:19804530-19804304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 5

               
               
               Conread position:9-213
               
               
               Cow position:chr19:41497649-41497440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 184

               
               
               Conread position:10-192
               
               
               Cow position:chr19:51294287-51294102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-204
               
               
               Cow position:chr19:5912958-5912762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:10-205
               
               
               Cow position:chr19:7558544-7558740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 75

               
               
               Conread position:10-220
               
               
               Cow position:chr19:7595147-7594945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:10-222
               
               
               Cow position:chr19:26056111-26056321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:10-223
               
               
               Cow position:chr19:28451391-28451607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):11, 34

               
               
               Conread position:11-203
               
               
               Cow position:chr19:25570595-25570786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:12-185
               
               
               Cow position:chr19:12469808-12469638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 93

               
               
               Conread position:13-224
               
               
               Cow position:chr19:24759883-24759674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 108

               
               
               Conread position:16-185
               
               
               Cow position:chr19:38597078-38597243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 110

               
               
               Conread position:16-225
               
               
               Cow position:chr19:38021453-38021658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:19-192
               
               
               Cow position:chr19:35245953-35246128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-203
               
               
               Cow position:chr19:54942980-54943162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:19-204
               
               
               Cow position:chr19:33609900-33610083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:19-204
               
               
               Cow position:chr19:37467050-37466867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:19-204
               
               
               Cow position:chr19:42695007-42695183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:19-215
               
               
               Cow position:chr19:53472576-53472773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 151

               
               
               Conread position:19-220
               
               
               Cow position:chr19:12698330-12698527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:19-223
               
               
               Cow position:chr19:53371887-53371680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:20-203
               
               
               Cow position:chr19:12160520-12160348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):94, 60

               
               
               Conread position:20-220
               
               
               Cow position:chr19:30917933-30917731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):13, 118

               
               
               Conread position:20-223
               
               
               Cow position:chr19:22956650-22956860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:24-185
               
               
               Cow position:chr19:45923221-45923379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):45, 132

               
               
               Conread position:24-220
               
               
               Cow position:chr19:22959857-22959658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:24-223
               
               
               Cow position:chr19:34757986-34757780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:24-224
               
               
               Cow position:chr19:43035256-43035459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-183
               
               
               Cow position:chr19:33913544-33913704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr19:18984164-18984331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:25-186
               
               
               Cow position:chr19:25526301-25526456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:25-186
               
               
               Cow position:chr19:39698303-39698464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:25-186
               
               
               Cow position:chr19:51637057-51637222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-188
               
               
               Cow position:chr19:6854262-6854107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 72

               
               
               Conread position:25-192
               
               
               Cow position:chr19:7637218-7637052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:25-197
               
               
               Cow position:chr19:41187856-41188024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 92

               
               
               Conread position:25-199
               
               
               Cow position:chr19:30471337-30471167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:25-200
               
               
               Cow position:chr19:9391134-9390951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr19:51621163-51620986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr19:7876228-7876408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 113

               
               
               Conread position:25-204
               
               
               Cow position:chr19:41718947-41718768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:25-205
               
               
               Cow position:chr19:4586530-4586354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:25-208
               
               
               Cow position:chr19:2137808-2137629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:25-212
               
               
               Cow position:chr19:31729280-31729468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:25-213
               
               
               Cow position:chr19:7794670-7794853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-213
               
               
               Cow position:chr19:52621840-52621643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):40, 138

               
               
               Conread position:25-214
               
               
               Cow position:chr19:5522138-5521951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:25-214
               
               
               Cow position:chr19:39758540-39758727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):109, 138

               
               
               Conread position:25-214
               
               
               Cow position:chr19:42776449-42776637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 172

               
               
               Conread position:25-214
               
               
               Cow position:chr19:55742267-55742077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:25-215
               
               
               Cow position:chr19:47363682-47363872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):40, 142

               
               
               Conread position:25-216
               
               
               Cow position:chr19:12240125-12240315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 141

               
               
               Conread position:25-216
               
               
               Cow position:chr19:18766040-18766235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-218
               
               
               Cow position:chr19:3109890-3110090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):24, 34

               
               
               Conread position:25-219
               
               
               Cow position:chr19:10755325-10755508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr19:41089603-41089401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-225
               
               
               Cow position:chr19:20622671-20622870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:26-216
               
               
               Cow position:chr19:54102919-54103109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:27-192
               
               
               Cow position:chr19:43373059-43373231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:27-217
               
               
               Cow position:chr19:27968677-27968489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 119

               
               
               Conread position:28-171
               
               
               Cow position:chr19:54157717-54157573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 46

               
               
               Conread position:28-183
               
               
               Cow position:chr19:31652578-31652735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr19:18515705-18515863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):91, 81

               
               
               Conread position:28-185
               
               
               Cow position:chr19:20437284-20437443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr19:21378449-21378290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr19:31875422-31875579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:28-186
               
               
               Cow position:chr19:23889467-23889309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:28-188
               
               
               Cow position:chr19:35444487-35444325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-192
               
               
               Cow position:chr19:15076180-15076008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr19:33988090-33988259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):37, 19

               
               
               Conread position:28-200
               
               
               Cow position:chr19:268374-268539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-204
               
               
               Cow position:chr19:1130315-1130493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr19:23084875-23085053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr19:40127146-40126971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:28-204
               
               
               Cow position:chr19:52458506-52458327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-205
               
               
               Cow position:chr19:52750738-52750563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:28-207
               
               
               Cow position:chr19:23680359-23680179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:28-207
               
               
               Cow position:chr19:34420429-34420606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:28-208
               
               
               Cow position:chr19:17964676-17964846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:28-212
               
               
               Cow position:chr19:1355623-1355809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr19:4339621-4339428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):37, 178

               
               
               Conread position:28-212
               
               
               Cow position:chr19:12801527-12801341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:28-213
               
               
               Cow position:chr19:18317010-18317197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:28-216
               
               
               Cow position:chr19:18302914-18302722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr19:39361165-39361359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:28-217
               
               
               Cow position:chr19:20700452-20700644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr19:25338966-25338778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:28-218
               
               
               Cow position:chr19:33518793-33518601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr19:33637028-33637219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):178, 69

               
               
               Conread position:28-219
               
               
               Cow position:chr19:1900709-1900518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:28-219
               
               
               Cow position:chr19:22871235-22871044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-219
               
               
               Cow position:chr19:33307601-33307796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr19:38732159-38732347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):36, 89

               
               
               Conread position:28-222
               
               
               Cow position:chr19:52146863-52146663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:28-223
               
               
               Cow position:chr19:10528267-10528069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:28-223
               
               
               Cow position:chr19:14961416-14961613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr19:20379012-20378822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:28-223
               
               
               Cow position:chr19:21836218-21836017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-223
               
               
               Cow position:chr19:22992372-22992175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr19:26176188-26175992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):38, 190

               
               
               Conread position:28-223
               
               
               Cow position:chr19:55160808-55161006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:28-224
               
               
               Cow position:chr19:12761083-12760885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr19:23378696-23378887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:28-224
               
               
               Cow position:chr19:33912604-33912407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:28-224
               
               
               Cow position:chr19:38410886-38411082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):25, 140

               
               
               Conread position:28-225
               
               
               Cow position:chr19:7158700-7158500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 177

               
               
               Conread position:28-226
               
               
               Cow position:chr19:12945286-12945091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):37, 118

               
               
               Conread position:28-226
               
               
               Cow position:chr19:23304470-23304270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:28-227
               
               
               Cow position:chr19:518829-519028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:29-191
               
               
               Cow position:chr19:29139223-29139387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-199
               
               
               Cow position:chr19:6344095-6344272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:29-199
               
               
               Cow position:chr19:22043331-22043167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-204
               
               
               Cow position:chr19:11194741-11194569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:29-207
               
               
               Cow position:chr19:15887299-15887121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:29-214
               
               
               Cow position:chr19:49683844-49683660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 139

               
               
               Conread position:29-217
               
               
               Cow position:chr19:12714121-12714310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):37, 86

               
               
               Conread position:29-220
               
               
               Cow position:chr19:16621336-16621149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 97

               
               
               Conread position:29-223
               
               
               Cow position:chr19:8269494-8269690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:29-228
               
               
               Cow position:chr19:14588426-14588625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 136

               
               
               Conread position:30-220
               
               
               Cow position:chr19:9392593-9392783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 140

               
               
               Conread position:32-205
               
               
               Cow position:chr19:30907927-30908096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):33, 94

               
               
               Conread position:32-226
               
               
               Cow position:chr19:42544552-42544746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:33-217
               
               
               Cow position:chr19:51031558-51031372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 134

               
               
               Conread position:33-222
               
               
               Cow position:chr19:6914765-6914955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):54, 162

               
               
               Conread position:35-183
               
               
               Cow position:chr19:42868042-42868192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-202
               
               
               Cow position:chr19:39672978-39672808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:35-204
               
               
               Cow position:chr19:9148967-9149138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:35-214
               
               
               Cow position:chr19:4537237-4537065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:35-223
               
               
               Cow position:chr19:18632254-18632064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):18, 106

               
               
               Conread position:36-185
               
               
               Cow position:chr19:24224367-24224510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):30, 81

               
               
               Conread position:36-201
               
               
               Cow position:chr19:36978295-36978462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:36-204
               
               
               Cow position:chr19:7674292-7674462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr19:52223407-52223577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-212
               
               
               Cow position:chr19:33116880-33117069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 64

               
               
               Conread position:36-217
               
               
               Cow position:chr19:43413811-43413985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:36-218
               
               
               Cow position:chr19:4486122-4485938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:36-218
               
               
               Cow position:chr19:9334841-9335025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-218
               
               
               Cow position:chr19:39661513-39661328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr19:46822737-46822920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:36-223
               
               
               Cow position:chr19:4297715-4297900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:36-223
               
               
               Cow position:chr19:28014507-28014697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:36-223
               
               
               Cow position:chr19:53776545-53776356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:36-224
               
               
               Cow position:chr19:27940404-27940594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-225
               
               
               Cow position:chr19:29368425-29368609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:36-225
               
               
               Cow position:chr19:29625930-29626114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:36-232
               
               
               Cow position:chr19:38917300-38917500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:36-237
               
               
               Cow position:chr19:35073025-35072821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:37-199
               
               
               Cow position:chr19:19174547-19174704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:37-212
               
               
               Cow position:chr19:6745403-6745586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:37-220
               
               
               Cow position:chr19:21224783-21224965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:37-222
               
               
               Cow position:chr19:5084336-5084513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:37-222
               
               
               Cow position:chr19:18039427-18039239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 129

               
               
               Conread position:37-225
               
               
               Cow position:chr19:1791669-1791481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 172

               
               
               Conread position:37-235
               
               
               Cow position:chr19:44572107-44572309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):5, 166

               
               
               Conread position:38-178
               
               
               Cow position:chr19:39057274-39057417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:39-218
               
               
               Cow position:chr19:24068253-24068073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):26, 159

               
               
               Conread position:39-223
               
               
               Cow position:chr19:30385062-30384880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):26, 83

               
               
               Conread position:40-186
               
               
               Cow position:chr19:23416851-23416703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:40-198
               
               
               Cow position:chr19:37082471-37082630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):26, 59

               
               
               Conread position:40-198
               
               
               Cow position:chr19:43431295-43431133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:40-199
               
               
               Cow position:chr19:11774948-11775107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 65

               
               
               Conread position:40-203
               
               
               Cow position:chr19:17203385-17203550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:40-204
               
               
               Cow position:chr19:19738032-19738198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-212
               
               
               Cow position:chr19:20547699-20547526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):24, 159

               
               
               Conread position:40-217
               
               
               Cow position:chr19:28928981-28928788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 114

               
               
               Conread position:40-223
               
               
               Cow position:chr19:23297766-23297947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 158

               
               
               Conread position:40-229
               
               
               Cow position:chr19:32031211-32031020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-237
               
               
               Cow position:chr19:27966116-27965918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:41-199
               
               
               Cow position:chr19:49221588-49221432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:41-204
               
               
               Cow position:chr19:11110699-11110534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:41-212
               
               
               Cow position:chr19:14545347-14545519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 157

               
               
               Conread position:41-214
               
               
               Cow position:chr19:22414233-22414067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:41-217
               
               
               Cow position:chr19:924483-924661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:41-222
               
               
               Cow position:chr19:6278218-6278401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:43-207
               
               
               Cow position:chr19:39378256-39378100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 78

               
               
               Conread position:44-215
               
               
               Cow position:chr19:18214167-18213997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):21, 91

               
               
               Conread position:47-224
               
               
               Cow position:chr19:4328835-4328659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:50-193
               
               
               Cow position:chr19:25677936-25677796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 66

               
               
               Conread position:50-199
               
               
               Cow position:chr19:41863077-41862931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-204
               
               
               Cow position:chr19:9531289-9531443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 136

               
               
               Conread position:50-204
               
               
               Cow position:chr19:18051121-18050966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:50-208
               
               
               Cow position:chr19:43292375-43292532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 43

               
               
               Conread position:50-213
               
               
               Cow position:chr19:10177621-10177781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 64

               
               
               Conread position:50-217
               
               
               Cow position:chr19:53245661-53245827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 114

               
               
               Conread position:50-218
               
               
               Cow position:chr19:29468733-29468901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 140

               
               
               Conread position:50-221
               
               
               Cow position:chr19:42217274-42217098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):16, 88

               
               
               Conread position:51-231
               
               
               Cow position:chr19:25582348-25582520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):14, 75

               
               
               Conread position:52-204
               
               
               Cow position:chr19:8572349-8572503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:52-219
               
               
               Cow position:chr19:11910839-11910674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):154, 8

               
               
               Conread position:53-207
               
               
               Cow position:chr19:8603380-8603539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:56-218
               
               
               Cow position:chr19:20941321-20941482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):54, 138

               
               
               Conread position:57-219
               
               
               Cow position:chr19:37646709-37646553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:61-196
               
               
               Cow position:chr19:36790517-36790652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:61-204
               
               
               Cow position:chr19:13439526-13439669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-181
               
               
               Cow position:chr19:40650839-40650957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr19:54057069-54057197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr19:15438159-15438295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:62-203
               
               
               Cow position:chr19:254743-254604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr19:13933498-13933640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr19:33758191-33758049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-205
               
               
               Cow position:chr19:28918467-28918606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):11, 64

               
               
               Conread position:62-207
               
               
               Cow position:chr19:15969727-15969873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr19:39246142-39246292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr19:51237835-51237681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr19:21244159-21244013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr19:43189980-43190137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr19:33691187-33691348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):52, 40

               
               
               Conread position:62-218
               
               
               Cow position:chr19:54105509-54105667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr19:6021026-6020870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr19:41946776-41946932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:62-224
               
               
               Cow position:chr19:27990754-27990911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 99

               
               
               Conread position:62-231
               
               
               Cow position:chr19:31763551-31763712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:63-184
               
               
               Cow position:chr19:24220450-24220331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:63-186
               
               
               Cow position:chr19:35623444-35623570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:63-201
               
               
               Cow position:chr19:22838315-22838451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 24

               
               
               Conread position:63-203
               
               
               Cow position:chr19:2589572-2589709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:63-204
               
               
               Cow position:chr19:16686927-16686788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:63-213
               
               
               Cow position:chr19:49958927-49959075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:63-214
               
               
               Cow position:chr19:6265529-6265671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:63-214
               
               
               Cow position:chr19:31319218-31319363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:63-219
               
               
               Cow position:chr19:47727366-47727215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:63-223
               
               
               Cow position:chr19:14135521-14135364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:63-225
               
               
               Cow position:chr19:15852984-15853140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:64-202
               
               
               Cow position:chr19:12497061-12497198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:66-197
               
               
               Cow position:chr19:36191309-36191440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-200
               
               
               Cow position:chr19:12130934-12130801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:66-205
               
               
               Cow position:chr19:38717280-38717136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:66-208
               
               
               Cow position:chr19:36221989-36222131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 131

               
               
               Conread position:66-224
               
               
               Cow position:chr19:19468444-19468600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:66-228
               
               
               Cow position:chr19:11559978-11559815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:68-198
               
               
               Cow position:chr19:53239881-53239756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:68-201
               
               
               Cow position:chr19:38637725-38637592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-223
               
               
               Cow position:chr19:13074430-13074278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:69-183
               
               
               Cow position:chr19:4281395-4281281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:69-214
               
               
               Cow position:chr19:20092895-20092756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):135, 45

               
               
               Conread position:70-220
               
               
               Cow position:chr19:24134969-24135118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:73-214
               
               
               Cow position:chr19:22900388-22900525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:75-218
               
               
               Cow position:chr19:2321969-2322112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 122

               
               
               Conread position:80-206
               
               
               Cow position:chr19:48729159-48729034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):114, 34

               
               
               Conread position:81-217
               
               
               Cow position:chr19:39637379-39637245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):98, 110

               
               
               Conread position:84-240
               
               
               Cow position:chr19:18344373-18344219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):149, 112

               
               
               Conread position:85-219
               
               
               Cow position:chr19:15104451-15104311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:88-208
               
               
               Cow position:chr19:39324040-39323914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:89-214
               
               
               Cow position:chr19:49189911-49189787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:89-217
               
               
               Cow position:chr19:55392217-55392090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:89-222
               
               
               Cow position:chr19:17676719-17676851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):21, 108

               
               
               Conread position:92-225
               
               
               Cow position:chr19:6477994-6478128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:94-218
               
               
               Cow position:chr19:51072933-51073055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:95-192
               
               
               Cow position:chr19:33978741-33978644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:95-200
               
               
               Cow position:chr19:52399728-52399830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:96-183
               
               
               Cow position:chr19:24444080-24444167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:96-214
               
               
               Cow position:chr19:47727552-47727436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:115-213
               
               
               Cow position:chr19:37639454-37639357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:99
               
               
               Alignm identity:82
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:1-160
               
               
               Cow position:chr2:15219116-15219281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-189
               
               
               Cow position:chr2:61480593-61480782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):16, 25

               
               
               Conread position:1-204
               
               
               Cow position:chr2:13468218-13468423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:1-204
               
               
               Cow position:chr2:28710996-28710803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:1-205
               
               
               Cow position:chr2:21382847-21382641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 13

               
               
               Conread position:1-206
               
               
               Cow position:chr2:27337772-27337567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:1-207
               
               
               Cow position:chr2:17940283-17940075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):12, 40

               
               
               Conread position:1-207
               
               
               Cow position:chr2:39363005-39363219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr2:30351703-30351492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 136

               
               
               Conread position:1-212
               
               
               Cow position:chr2:46312443-46312648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-212
               
               
               Cow position:chr2:47047751-47047540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:1-213
               
               
               Cow position:chr2:4644274-4644483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 162

               
               
               Conread position:1-216
               
               
               Cow position:chr2:55496292-55496074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 51

               
               
               Conread position:1-217
               
               
               Cow position:chr2:69579676-69579456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-218
               
               
               Cow position:chr2:68328845-68328633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:1-220
               
               
               Cow position:chr2:34492461-34492677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 69

               
               
               Conread position:1-220
               
               
               Cow position:chr2:80275290-80275069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-222
               
               
               Cow position:chr2:43990775-43990995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):12, 112

               
               
               Conread position:1-228
               
               
               Cow position:chr2:45567251-45567027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):13, 57

               
               
               Conread position:1-231
               
               
               Cow position:chr2:48525539-48525300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 220

               
               
               Conread position:2-199
               
               
               Cow position:chr2:22370939-22370747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 16

               
               
               Conread position:2-201
               
               
               Cow position:chr2:42476224-42476032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):63, 44

               
               
               Conread position:2-201
               
               
               Cow position:chr2:80177583-80177394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 38

               
               
               Conread position:2-205
               
               
               Cow position:chr2:67047427-67047627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):65, 14

               
               
               Conread position:2-214
               
               
               Cow position:chr2:14218651-14218869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):18, 199

               
               
               Conread position:3-175
               
               
               Cow position:chr2:50565935-50566115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr2:38795761-38795584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 34

               
               
               Conread position:3-192
               
               
               Cow position:chr2:13369655-13369852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-192
               
               
               Cow position:chr2:19441563-19441768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):18, 6

               
               
               Conread position:3-194
               
               
               Cow position:chr2:76313867-76313669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):18, 90

               
               
               Conread position:3-198
               
               
               Cow position:chr2:67745253-67745450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:3-200
               
               
               Cow position:chr2:46204517-46204722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr2:65554803-65554599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 154

               
               
               Conread position:3-202
               
               
               Cow position:chr2:38662692-38662492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:3-204
               
               
               Cow position:chr2:27178654-27178853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-204
               
               
               Cow position:chr2:28726471-28726669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 22

               
               
               Conread position:3-205
               
               
               Cow position:chr2:29041898-29042104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 189

               
               
               Conread position:3-205
               
               
               Cow position:chr2:80882824-80882622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):62, 112

               
               
               Conread position:3-207
               
               
               Cow position:chr2:41915422-41915218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):62, 120

               
               
               Conread position:3-212
               
               
               Cow position:chr2:48635044-48634838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:3-213
               
               
               Cow position:chr2:65269689-65269474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:3-214
               
               
               Cow position:chr2:13000918-13001132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-214
               
               
               Cow position:chr2:15734417-15734635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 199

               
               
               Conread position:3-214
               
               
               Cow position:chr2:37791495-37791275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr2:37614942-37615163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr2:68292769-68292991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr2:31355698-31355918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):23, 192

               
               
               Conread position:3-217
               
               
               Cow position:chr2:65830336-65830117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 127

               
               
               Conread position:3-217
               
               
               Cow position:chr2:82957679-82957898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 201

               
               
               Conread position:3-218
               
               
               Cow position:chr2:33560671-33560453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:3-219
               
               
               Cow position:chr2:47978044-47977825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 184

               
               
               Conread position:3-220
               
               
               Cow position:chr2:79837725-79837498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr2:9939773-9939990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:3-223
               
               
               Cow position:chr2:9726097-9725873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):18, 61

               
               
               Conread position:3-223
               
               
               Cow position:chr2:29290312-29290091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):18, 48

               
               
               Conread position:3-225
               
               
               Cow position:chr2:38837516-38837284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr2:19320004-19320229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:3-228
               
               
               Cow position:chr2:72003944-72003716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:3-231
               
               
               Cow position:chr2:39566693-39566462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):20, 109

               
               
               Conread position:3-232
               
               
               Cow position:chr2:72315811-72315580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:4-183
               
               
               Cow position:chr2:1317877-1317696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-184
               
               
               Cow position:chr2:67386471-67386284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:4-185
               
               
               Cow position:chr2:35988617-35988430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):18, 166

               
               
               Conread position:4-185
               
               
               Cow position:chr2:86541150-86540966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:4-187
               
               
               Cow position:chr2:29159908-29160098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):21, 119

               
               
               Conread position:4-191
               
               
               Cow position:chr2:56837654-56837458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:4-192
               
               
               Cow position:chr2:46014768-46014964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-195
               
               
               Cow position:chr2:67952989-67953182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:4-198
               
               
               Cow position:chr2:24271230-24271415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:4-199
               
               
               Cow position:chr2:39642752-39642949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):20, 161

               
               
               Conread position:4-199
               
               
               Cow position:chr2:46316874-46317075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:4-204
               
               
               Cow position:chr2:5300598-5300803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 92

               
               
               Conread position:4-204
               
               
               Cow position:chr2:26745122-26744918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 49

               
               
               Conread position:4-204
               
               
               Cow position:chr2:36963529-36963727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):8, 159

               
               
               Conread position:4-204
               
               
               Cow position:chr2:54700464-54700664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):61, 126

               
               
               Conread position:4-204
               
               
               Cow position:chr2:63568715-63568914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:4-204
               
               
               Cow position:chr2:81480852-81481051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:4-207
               
               
               Cow position:chr2:43835558-43835350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 104

               
               
               Conread position:4-208
               
               
               Cow position:chr2:46126133-46125928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 99

               
               
               Conread position:4-211
               
               
               Cow position:chr2:29681840-29682057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:4-212
               
               
               Cow position:chr2:55632778-55632985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):21, 150

               
               
               Conread position:4-213
               
               
               Cow position:chr2:72342855-72342638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):19, 54

               
               
               Conread position:4-216
               
               
               Cow position:chr2:56003239-56003450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:4-218
               
               
               Cow position:chr2:71486784-71486995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:4-219
               
               
               Cow position:chr2:29395003-29394784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 211

               
               
               Conread position:4-219
               
               
               Cow position:chr2:40410147-40410364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):22, 153

               
               
               Conread position:4-221
               
               
               Cow position:chr2:14847868-14848070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 75

               
               
               Conread position:4-223
               
               
               Cow position:chr2:24602404-24602626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 105

               
               
               Conread position:4-223
               
               
               Cow position:chr2:38700371-38700155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):62, 29

               
               
               Conread position:4-223
               
               
               Cow position:chr2:46119762-46119541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:4-224
               
               
               Cow position:chr2:39095358-39095582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:4-226
               
               
               Cow position:chr2:40597580-40597800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-233
               
               
               Cow position:chr2:42970116-42970341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):22, 122

               
               
               Conread position:4-240
               
               
               Cow position:chr2:15348395-15348639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):25, 233

               
               
               Conread position:5-187
               
               
               Cow position:chr2:1422354-1422541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:5-199
               
               
               Cow position:chr2:39663380-39663580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 19

               
               
               Conread position:5-213
               
               
               Cow position:chr2:48837285-48837078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):18, 101

               
               
               Conread position:5-218
               
               
               Cow position:chr2:30954590-30954373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):15, 9

               
               
               Conread position:5-223
               
               
               Cow position:chr2:21049324-21049107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:5-224
               
               
               Cow position:chr2:26170748-26170976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):19, 105

               
               
               Conread position:6-170
               
               
               Cow position:chr2:80235347-80235178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:6-199
               
               
               Cow position:chr2:83273661-83273473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 18

               
               
               Conread position:6-214
               
               
               Cow position:chr2:44714672-44714459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-214
               
               
               Cow position:chr2:69250661-69250451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:6-215
               
               
               Cow position:chr2:44197883-44198099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:6-216
               
               
               Cow position:chr2:14826284-14826498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-216
               
               
               Cow position:chr2:26361762-26361978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 124

               
               
               Conread position:6-217
               
               
               Cow position:chr2:46614405-46614621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):20, 133

               
               
               Conread position:6-217
               
               
               Cow position:chr2:86490635-86490426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 31

               
               
               Conread position:6-231
               
               
               Cow position:chr2:29930887-29930660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:6-234
               
               
               Cow position:chr2:57776349-57776583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):20, 199

               
               
               Conread position:7-223
               
               
               Cow position:chr2:12186638-12186854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:8-131
               
               
               Cow position:chr2:36017401-36017277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):55, 17

               
               
               Conread position:8-192
               
               
               Cow position:chr2:49345004-49345190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):11, 29

               
               
               Conread position:8-200
               
               
               Cow position:chr2:46139327-46139529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:9-199
               
               
               Cow position:chr2:47123542-47123353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):57, 19

               
               
               Conread position:9-223
               
               
               Cow position:chr2:41040698-41040480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:10-192
               
               
               Cow position:chr2:20919547-20919358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 55

               
               
               Conread position:10-192
               
               
               Cow position:chr2:76762224-76762415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-199
               
               
               Cow position:chr2:50914004-50913813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):16, 126

               
               
               Conread position:10-206
               
               
               Cow position:chr2:25922418-25922619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):27, 141

               
               
               Conread position:10-207
               
               
               Cow position:chr2:63051168-63050965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:10-213
               
               
               Cow position:chr2:52466440-52466238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):11, 174

               
               
               Conread position:10-214
               
               
               Cow position:chr2:36178684-36178474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-215
               
               
               Cow position:chr2:5755284-5755086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):12, 79

               
               
               Conread position:10-222
               
               
               Cow position:chr2:15400933-15400725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:10-223
               
               
               Cow position:chr2:12139535-12139321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):32, 195

               
               
               Conread position:10-223
               
               
               Cow position:chr2:60182019-60181802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:11-185
               
               
               Cow position:chr2:41459107-41459285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr2:5113856-5114049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:12-223
               
               
               Cow position:chr2:64473339-64473120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):9, 128

               
               
               Conread position:13-223
               
               
               Cow position:chr2:45484946-45484738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:14-201
               
               
               Cow position:chr2:16513870-16514059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):11, 56

               
               
               Conread position:14-213
               
               
               Cow position:chr2:24469362-24469169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 6

               
               
               Conread position:14-218
               
               
               Cow position:chr2:16847197-16847402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):12, 192

               
               
               Conread position:16-185
               
               
               Cow position:chr2:78360430-78360598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-213
               
               
               Cow position:chr2:32660198-32660394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-226
               
               
               Cow position:chr2:15059041-15058835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:16-229
               
               
               Cow position:chr2:47784626-47784835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 19

               
               
               Conread position:17-223
               
               
               Cow position:chr2:71892495-71892702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:19-145
               
               
               Cow position:chr2:5815996-5815868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-186
               
               
               Cow position:chr2:17492495-17492330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 97

               
               
               Conread position:19-186
               
               
               Cow position:chr2:47065131-47065301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:19-204
               
               
               Cow position:chr2:485599-485783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:19-204
               
               
               Cow position:chr2:21171627-21171809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:19-204
               
               
               Cow position:chr2:23301754-23301935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):47, 136

               
               
               Conread position:19-204
               
               
               Cow position:chr2:32988588-32988777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr2:53567511-53567692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):46, 72

               
               
               Conread position:19-204
               
               
               Cow position:chr2:57802466-57802275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 153

               
               
               Conread position:19-206
               
               
               Cow position:chr2:12682639-12682450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):46, 167

               
               
               Conread position:19-207
               
               
               Cow position:chr2:9476413-9476224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):9, 106

               
               
               Conread position:19-211
               
               
               Cow position:chr2:40728373-40728576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-214
               
               
               Cow position:chr2:46521794-46521990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:19-215
               
               
               Cow position:chr2:7194230-7194426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:19-218
               
               
               Cow position:chr2:21949998-21950193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:19-218
               
               
               Cow position:chr2:32264369-32264170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-218
               
               
               Cow position:chr2:41622504-41622703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):46, 192

               
               
               Conread position:19-218
               
               
               Cow position:chr2:49428404-49428604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):46, 53

               
               
               Conread position:19-218
               
               
               Cow position:chr2:68970762-68970963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):44, 179

               
               
               Conread position:19-219
               
               
               Cow position:chr2:44007442-44007652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:19-220
               
               
               Cow position:chr2:41157991-41158178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:19-222
               
               
               Cow position:chr2:2437582-2437381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):162, 44

               
               
               Conread position:19-222
               
               
               Cow position:chr2:44313696-44313491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-223
               
               
               Cow position:chr2:39350466-39350264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:19-229
               
               
               Cow position:chr2:41145338-41145552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:20-216
               
               
               Cow position:chr2:33988292-33988088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:20-223
               
               
               Cow position:chr2:13317607-13317811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):43, 5

               
               
               Conread position:22-180
               
               
               Cow position:chr2:81233085-81232924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):43, 13

               
               
               Conread position:22-219
               
               
               Cow position:chr2:28872918-28873115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):45, 84

               
               
               Conread position:22-219
               
               
               Cow position:chr2:40411149-40410952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):33, 28

               
               
               Conread position:22-220
               
               
               Cow position:chr2:43136418-43136217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:22-225
               
               
               Cow position:chr2:61816494-61816695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 21

               
               
               Conread position:24-195
               
               
               Cow position:chr2:69780143-69779969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:24-204
               
               
               Cow position:chr2:7908845-7909022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:24-204
               
               
               Cow position:chr2:22759950-22759767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:24-204
               
               
               Cow position:chr2:69109321-69109139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 173

               
               
               Conread position:24-205
               
               
               Cow position:chr2:24669392-24669578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 96

               
               
               Conread position:24-214
               
               
               Cow position:chr2:10628508-10628316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 175

               
               
               Conread position:24-218
               
               
               Cow position:chr2:44931234-44931038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 172

               
               
               Conread position:25-177
               
               
               Cow position:chr2:47189541-47189694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:25-185
               
               
               Cow position:chr2:16669497-16669658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:25-185
               
               
               Cow position:chr2:45589627-45589465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr2:46230295-46230135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:25-185
               
               
               Cow position:chr2:65931994-65932156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:25-185
               
               
               Cow position:chr2:72527989-72528150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:25-192
               
               
               Cow position:chr2:45522006-45521837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 63

               
               
               Conread position:25-192
               
               
               Cow position:chr2:67576128-67576297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr2:81293856-81294024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-198
               
               
               Cow position:chr2:38953852-38954034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-198
               
               
               Cow position:chr2:53652880-53653054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:25-199
               
               
               Cow position:chr2:36117278-36117448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:25-199
               
               
               Cow position:chr2:47111657-47111828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 94

               
               
               Conread position:25-199
               
               
               Cow position:chr2:76110425-76110592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:25-199
               
               
               Cow position:chr2:80848112-80848285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:25-200
               
               
               Cow position:chr2:45565733-45565904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 90

               
               
               Conread position:25-200
               
               
               Cow position:chr2:68064595-68064772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-202
               
               
               Cow position:chr2:45432418-45432591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr2:11573837-11574020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 71

               
               
               Conread position:25-204
               
               
               Cow position:chr2:26694636-26694817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr2:33711964-33711775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr2:42266829-42266637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 53

               
               
               Conread position:25-204
               
               
               Cow position:chr2:44063747-44063572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:25-204
               
               
               Cow position:chr2:46053499-46053681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr2:55004316-55004490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:25-204
               
               
               Cow position:chr2:73923841-73924021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:25-205
               
               
               Cow position:chr2:2827772-2827954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:25-206
               
               
               Cow position:chr2:12873440-12873614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-207
               
               
               Cow position:chr2:38619407-38619227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 138

               
               
               Conread position:25-211
               
               
               Cow position:chr2:66959704-66959892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:25-212
               
               
               Cow position:chr2:19212026-19211846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:25-212
               
               
               Cow position:chr2:22371395-22371579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):177, 15

               
               
               Conread position:25-212
               
               
               Cow position:chr2:45478568-45478387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-213
               
               
               Cow position:chr2:64465747-64465565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 71

               
               
               Conread position:25-214
               
               
               Cow position:chr2:33251060-33250872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 26

               
               
               Conread position:25-214
               
               
               Cow position:chr2:37059140-37058950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 145

               
               
               Conread position:25-214
               
               
               Cow position:chr2:56350888-56350697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):38, 180

               
               
               Conread position:25-214
               
               
               Cow position:chr2:56937709-56937892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:25-214
               
               
               Cow position:chr2:69199291-69199110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:25-216
               
               
               Cow position:chr2:2491098-2490908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:25-216
               
               
               Cow position:chr2:16667966-16668153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:25-216
               
               
               Cow position:chr2:23712902-23713092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:25-216
               
               
               Cow position:chr2:35181429-35181614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):91, 38

               
               
               Conread position:25-216
               
               
               Cow position:chr2:37224099-37224289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:25-216
               
               
               Cow position:chr2:54968037-54968226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:25-217
               
               
               Cow position:chr2:9062706-9062902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-217
               
               
               Cow position:chr2:10574534-10574344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-217
               
               
               Cow position:chr2:42897694-42897887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-218
               
               
               Cow position:chr2:30161860-30161666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 180

               
               
               Conread position:25-218
               
               
               Cow position:chr2:44215532-44215722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):173, 79

               
               
               Conread position:25-218
               
               
               Cow position:chr2:47784813-47785003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 179

               
               
               Conread position:25-218
               
               
               Cow position:chr2:56102302-56102113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 41

               
               
               Conread position:25-218
               
               
               Cow position:chr2:57454077-57454282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 182

               
               
               Conread position:25-219
               
               
               Cow position:chr2:32048509-32048699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 30

               
               
               Conread position:25-219
               
               
               Cow position:chr2:46161986-46162170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:25-219
               
               
               Cow position:chr2:49467658-49467849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:25-219
               
               
               Cow position:chr2:51855713-51855517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr2:66562012-66561816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr2:3128049-3127853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:25-220
               
               
               Cow position:chr2:16839665-16839860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:25-220
               
               
               Cow position:chr2:43474204-43474400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 124

               
               
               Conread position:25-220
               
               
               Cow position:chr2:70449055-70449242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 21

               
               
               Conread position:25-221
               
               
               Cow position:chr2:9936627-9936436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):40, 141

               
               
               Conread position:25-221
               
               
               Cow position:chr2:10305375-10305176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-221
               
               
               Cow position:chr2:81913027-81913223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:25-222
               
               
               Cow position:chr2:44620615-44620812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:25-223
               
               
               Cow position:chr2:1364570-1364371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):58, 74

               
               
               Conread position:25-223
               
               
               Cow position:chr2:14710091-14709901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:25-223
               
               
               Cow position:chr2:24218187-24217992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:25-223
               
               
               Cow position:chr2:36124462-36124657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:158
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr2:42608095-42608292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-223
               
               
               Cow position:chr2:70657217-70657419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 146

               
               
               Conread position:25-225
               
               
               Cow position:chr2:42183401-42183595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:25-225
               
               
               Cow position:chr2:67595991-67595789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-228
               
               
               Cow position:chr2:8843800-8843594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:25-232
               
               
               Cow position:chr2:7478912-7478697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:25-235
               
               
               Cow position:chr2:19294623-19294825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):90, 33

               
               
               Conread position:26-200
               
               
               Cow position:chr2:49717058-49716883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:26-219
               
               
               Cow position:chr2:22371922-22371738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 90

               
               
               Conread position:27-185
               
               
               Cow position:chr2:48739027-48738860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:27-185
               
               
               Cow position:chr2:52055507-52055661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:27-213
               
               
               Cow position:chr2:47165799-47165613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:28-162
               
               
               Cow position:chr2:53430751-53430883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-181
               
               
               Cow position:chr2:20791403-20791239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-186
               
               
               Cow position:chr2:70847230-70847074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:28-191
               
               
               Cow position:chr2:46202294-46202461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:28-199
               
               
               Cow position:chr2:38042862-38043035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr2:47194993-47195168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-201
               
               
               Cow position:chr2:56846779-56846951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 116

               
               
               Conread position:28-204
               
               
               Cow position:chr2:841185-841363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr2:11656922-11657096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:28-204
               
               
               Cow position:chr2:13856790-13856611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr2:33531916-33531738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr2:78379387-78379215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:28-204
               
               
               Cow position:chr2:84480469-84480293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:28-206
               
               
               Cow position:chr2:32350900-32350720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-207
               
               
               Cow position:chr2:33471956-33471787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):13, 38

               
               
               Conread position:28-212
               
               
               Cow position:chr2:21074095-21073908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-213
               
               
               Cow position:chr2:78256322-78256504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:28-214
               
               
               Cow position:chr2:6267739-6267549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr2:21410251-21410443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 175

               
               
               Conread position:28-214
               
               
               Cow position:chr2:43131127-43131316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr2:58979845-58979656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-214
               
               
               Cow position:chr2:79235553-79235743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 117

               
               
               Conread position:28-215
               
               
               Cow position:chr2:80607236-80607051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):174, 37

               
               
               Conread position:28-216
               
               
               Cow position:chr2:37652280-37652473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):38, 188

               
               
               Conread position:28-217
               
               
               Cow position:chr2:39590289-39590476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:28-217
               
               
               Cow position:chr2:59992220-59992031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 166

               
               
               Conread position:28-218
               
               
               Cow position:chr2:9767402-9767209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr2:38234108-38234299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:28-218
               
               
               Cow position:chr2:39334629-39334435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr2:2931086-2931281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr2:64230450-64230647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr2:43994967-43995155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:28-220
               
               
               Cow position:chr2:50013390-50013580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):63, 147

               
               
               Conread position:28-220
               
               
               Cow position:chr2:56738085-56738280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr2:67302050-67302236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 19

               
               
               Conread position:28-220
               
               
               Cow position:chr2:73023739-73023930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr2:2031979-2031786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:28-221
               
               
               Cow position:chr2:45499170-45498978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-222
               
               
               Cow position:chr2:51098053-51097857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):39, 137

               
               
               Conread position:28-223
               
               
               Cow position:chr2:2485876-2486074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):178, 37

               
               
               Conread position:28-223
               
               
               Cow position:chr2:3728059-3728247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:28-223
               
               
               Cow position:chr2:3739813-3739614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr2:11001038-11000838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr2:16488021-16488211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):26, 132

               
               
               Conread position:28-223
               
               
               Cow position:chr2:18233051-18233248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr2:30179880-30179684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:28-223
               
               
               Cow position:chr2:33497172-33496974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr2:78116331-78116133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr2:85794937-85794746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr2:18997751-18997939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-224
               
               
               Cow position:chr2:51181746-51181548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr2:29480051-29479849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr2:66237228-66237427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-226
               
               
               Cow position:chr2:19500052-19499849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-227
               
               
               Cow position:chr2:47090794-47090994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 182

               
               
               Conread position:28-232
               
               
               Cow position:chr2:80116129-80116334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:28-233
               
               
               Cow position:chr2:22677224-22677430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:28-236
               
               
               Cow position:chr2:74353931-74354147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):36, 180

               
               
               Conread position:28-240
               
               
               Cow position:chr2:41462392-41462180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:29-185
               
               
               Cow position:chr2:37973295-37973136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-203
               
               
               Cow position:chr2:39483516-39483695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-206
               
               
               Cow position:chr2:52345931-52345753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):34, 82

               
               
               Conread position:29-216
               
               
               Cow position:chr2:20337060-20336871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-216
               
               
               Cow position:chr2:30952308-30952498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:29-224
               
               
               Cow position:chr2:46111021-46110819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:29-224
               
               
               Cow position:chr2:67927762-67927566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 170

               
               
               Conread position:30-217
               
               
               Cow position:chr2:6039047-6039235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:30-219
               
               
               Cow position:chr2:13354710-13354903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):35, 50

               
               
               Conread position:31-208
               
               
               Cow position:chr2:65603601-65603428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 65

               
               
               Conread position:31-221
               
               
               Cow position:chr2:36376893-36377085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):32, 139

               
               
               Conread position:31-225
               
               
               Cow position:chr2:70147947-70148144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-205
               
               
               Cow position:chr2:41311237-41311068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:32-212
               
               
               Cow position:chr2:84344115-84343935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:32-216
               
               
               Cow position:chr2:29592503-29592315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 60

               
               
               Conread position:32-220
               
               
               Cow position:chr2:13672560-13672734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:32-221
               
               
               Cow position:chr2:37097862-37097677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):34, 63

               
               
               Conread position:32-228
               
               
               Cow position:chr2:13036154-13036356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-233
               
               
               Cow position:chr2:65342427-65342229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):33, 163

               
               
               Conread position:35-191
               
               
               Cow position:chr2:49862693-49862850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 52

               
               
               Conread position:35-199
               
               
               Cow position:chr2:67480014-67480189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr2:12952078-12952250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:35-218
               
               
               Cow position:chr2:28820403-28820587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):30, 164

               
               
               Conread position:35-220
               
               
               Cow position:chr2:46609995-46610179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:35-223
               
               
               Cow position:chr2:82374475-82374663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):75, 30

               
               
               Conread position:36-201
               
               
               Cow position:chr2:30384228-30384062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:36-202
               
               
               Cow position:chr2:16481821-16481653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr2:30127250-30127083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:36-215
               
               
               Cow position:chr2:36077392-36077577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 164

               
               
               Conread position:36-217
               
               
               Cow position:chr2:41248611-41248782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):31, 64

               
               
               Conread position:36-218
               
               
               Cow position:chr2:74070372-74070548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):33, 87

               
               
               Conread position:36-219
               
               
               Cow position:chr2:26454614-26454428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr2:50368231-50368422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):27, 80

               
               
               Conread position:36-220
               
               
               Cow position:chr2:52332597-52332411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr2:61474059-61473866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 182

               
               
               Conread position:36-221
               
               
               Cow position:chr2:60091393-60091213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:36-223
               
               
               Cow position:chr2:14787726-14787915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-223
               
               
               Cow position:chr2:39371457-39371637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:36-223
               
               
               Cow position:chr2:65587196-65587386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:36-226
               
               
               Cow position:chr2:31673301-31673495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-226
               
               
               Cow position:chr2:46164461-46164273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:36-233
               
               
               Cow position:chr2:18243578-18243770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:36-236
               
               
               Cow position:chr2:12686750-12686550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):31, 83

               
               
               Conread position:37-161
               
               
               Cow position:chr2:53575948-53575822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-204
               
               
               Cow position:chr2:43139616-43139449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:37-217
               
               
               Cow position:chr2:19842828-19843006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):5, 59

               
               
               Conread position:37-227
               
               
               Cow position:chr2:8237313-8237503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):168, 72

               
               
               Conread position:38-204
               
               
               Cow position:chr2:73981674-73981836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:38-217
               
               
               Cow position:chr2:82609725-82609549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):24, 127

               
               
               Conread position:39-217
               
               
               Cow position:chr2:44022763-44022584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):19, 159

               
               
               Conread position:40-186
               
               
               Cow position:chr2:40508553-40508405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:40-200
               
               
               Cow position:chr2:8576047-8576202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:40-201
               
               
               Cow position:chr2:80961922-80961758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-203
               
               
               Cow position:chr2:54009271-54009106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:40-204
               
               
               Cow position:chr2:46180445-46180281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:40-214
               
               
               Cow position:chr2:27599455-27599286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:40-218
               
               
               Cow position:chr2:73650450-73650628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 163

               
               
               Conread position:40-220
               
               
               Cow position:chr2:15972865-15973047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 128

               
               
               Conread position:40-220
               
               
               Cow position:chr2:82121988-82121805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 160

               
               
               Conread position:40-223
               
               
               Cow position:chr2:16751835-16751654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:40-224
               
               
               Cow position:chr2:11257992-11257807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 118

               
               
               Conread position:40-231
               
               
               Cow position:chr2:79687487-79687306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-197
               
               
               Cow position:chr2:78249781-78249939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:41-218
               
               
               Cow position:chr2:12816675-12816858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:42-204
               
               
               Cow position:chr2:29928105-29928269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:43-211
               
               
               Cow position:chr2:19058203-19058364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:43-223
               
               
               Cow position:chr2:72359588-72359407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):24, 153

               
               
               Conread position:44-214
               
               
               Cow position:chr2:41351138-41350970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 85

               
               
               Conread position:48-226
               
               
               Cow position:chr2:36985983-36986163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 33

               
               
               Conread position:50-201
               
               
               Cow position:chr2:26159925-26160083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-221
               
               
               Cow position:chr2:34570952-34570783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:50-226
               
               
               Cow position:chr2:67810988-67810812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 23

               
               
               Conread position:52-224
               
               
               Cow position:chr2:1777819-1777648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 147

               
               
               Conread position:53-185
               
               
               Cow position:chr2:25284092-25284226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:53-204
               
               
               Cow position:chr2:58336166-58336016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):14, 42

               
               
               Conread position:54-224
               
               
               Cow position:chr2:35934938-35935113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):11, 160

               
               
               Conread position:58-214
               
               
               Cow position:chr2:9313316-9313469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:61-213
               
               
               Cow position:chr2:35466470-35466321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:61-217
               
               
               Cow position:chr2:31749902-31749747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:62-182
               
               
               Cow position:chr2:55872454-55872334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr2:8747881-8747751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-194
               
               
               Cow position:chr2:1410069-1409937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-200
               
               
               Cow position:chr2:74013003-74012865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):25, 29

               
               
               Conread position:62-201
               
               
               Cow position:chr2:60903745-60903883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:62-203
               
               
               Cow position:chr2:70771815-70771673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 136

               
               
               Conread position:62-204
               
               
               Cow position:chr2:19017519-19017661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr2:65087357-65087499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-206
               
               
               Cow position:chr2:2098245-2098102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:62-208
               
               
               Cow position:chr2:59396986-59396840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr2:10505546-10505397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr2:31410435-31410578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr2:56021379-56021532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:62-216
               
               
               Cow position:chr2:19530835-19530989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr2:67621409-67621559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr2:62688206-62688360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 80

               
               
               Conread position:62-219
               
               
               Cow position:chr2:36137077-36137232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr2:45799862-45799705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):47, 39

               
               
               Conread position:62-220
               
               
               Cow position:chr2:56771440-56771281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):77, 9

               
               
               Conread position:62-220
               
               
               Cow position:chr2:81894110-81893945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):85, 51

               
               
               Conread position:62-221
               
               
               Cow position:chr2:1923817-1923660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr2:59650721-59650880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-222
               
               
               Cow position:chr2:35405009-35405169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-222
               
               
               Cow position:chr2:80237338-80237178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr2:8859115-8859266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr2:55278523-55278360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):43, 79

               
               
               Conread position:62-223
               
               
               Cow position:chr2:68374537-68374375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:62-224
               
               
               Cow position:chr2:37791051-37790893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:62-224
               
               
               Cow position:chr2:39480029-39480187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:62-224
               
               
               Cow position:chr2:56867239-56867076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):139, 86

               
               
               Conread position:62-225
               
               
               Cow position:chr2:42586290-42586450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:62-231
               
               
               Cow position:chr2:70681380-70681549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 24

               
               
               Conread position:62-231
               
               
               Cow position:chr2:84754853-84755023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):151, 134

               
               
               Conread position:62-232
               
               
               Cow position:chr2:58070060-58070230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):162, 148

               
               
               Conread position:63-183
               
               
               Cow position:chr2:16332116-16332235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:63-199
               
               
               Cow position:chr2:1036320-1036185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:63-218
               
               
               Cow position:chr2:58153773-58153923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):144, 51

               
               
               Conread position:63-218
               
               
               Cow position:chr2:66027625-66027777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:63-220
               
               
               Cow position:chr2:29121950-29122106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:63-220
               
               
               Cow position:chr2:30394222-30394063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 134

               
               
               Conread position:63-223
               
               
               Cow position:chr2:45597049-45597203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 21

               
               
               Conread position:63-224
               
               
               Cow position:chr2:44051377-44051533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):149, 49

               
               
               Conread position:64-204
               
               
               Cow position:chr2:38272080-38271944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):53, 27

               
               
               Conread position:64-220
               
               
               Cow position:chr2:15720705-15720853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:64-222
               
               
               Cow position:chr2:66403861-66403704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:65-199
               
               
               Cow position:chr2:82269925-82269795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:65-217
               
               
               Cow position:chr2:53785268-53785416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:65-222
               
               
               Cow position:chr2:39864494-39864649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:66-215
               
               
               Cow position:chr2:74198259-74198109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:66-225
               
               
               Cow position:chr2:21916664-21916508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:67-198
               
               
               Cow position:chr2:55660799-55660924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:67-212
               
               
               Cow position:chr2:45899606-45899747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):120, 45

               
               
               Conread position:68-220
               
               
               Cow position:chr2:84501297-84501144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:68-237
               
               
               Cow position:chr2:42975622-42975460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 57

               
               
               Conread position:70-217
               
               
               Cow position:chr2:22496232-22496094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:72-219
               
               
               Cow position:chr2:17805557-17805409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):116, 140

               
               
               Conread position:74-222
               
               
               Cow position:chr2:38214621-38214470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:75-212
               
               
               Cow position:chr2:75331747-75331608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:75-224
               
               
               Cow position:chr2:25688006-25687858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:79-223
               
               
               Cow position:chr2:55390616-55390470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:81-208
               
               
               Cow position:chr2:11163140-11163012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:82-217
               
               
               Cow position:chr2:33503448-33503311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:82-223
               
               
               Cow position:chr2:60084491-60084351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:85-200
               
               
               Cow position:chr2:3095962-3095848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:85-223
               
               
               Cow position:chr2:43960267-43960408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):115, 129

               
               
               Conread position:85-225
               
               
               Cow position:chr2:28452855-28452723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:85-226
               
               
               Cow position:chr2:882244-882099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:86-212
               
               
               Cow position:chr2:3904077-3903952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:88-192
               
               
               Cow position:chr2:23935486-23935589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:88-208
               
               
               Cow position:chr2:47809039-47809160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-220
               
               
               Cow position:chr2:40861400-40861532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:92-197
               
               
               Cow position:chr2:74104561-74104456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:96-198
               
               
               Cow position:chr2:26635372-26635269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:102-219
               
               
               Cow position:chr2:34557742-34557859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):103, 109

               
               
               Conread position:107-213
               
               
               Cow position:chr2:56094992-56095096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:107-220
               
               
               Cow position:chr2:29806046-29806157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:112-213
               
               
               Cow position:chr2:40028843-40028742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:116-232
               
               
               Cow position:chr2:40803145-40803261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-192
               
               
               Cow position:chr20:40303838-40303645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:1-204
               
               
               Cow position:chr20:29845096-29845304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 96

               
               
               Conread position:1-204
               
               
               Cow position:chr20:37357903-37358108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:1-206
               
               
               Cow position:chr20:39016829-39016618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr20:4755789-4755577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):12, 108

               
               
               Conread position:2-212
               
               
               Cow position:chr20:16941241-16941027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:3-201
               
               
               Cow position:chr20:13876659-13876464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):63, 22

               
               
               Conread position:3-204
               
               
               Cow position:chr20:20124989-20124783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:3-216
               
               
               Cow position:chr20:34083760-34083982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:3-217
               
               
               Cow position:chr20:11920687-11920472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:3-220
               
               
               Cow position:chr20:5950600-5950375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 216

               
               
               Conread position:3-222
               
               
               Cow position:chr20:41089749-41089525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr20:18193050-18192826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:4-174
               
               
               Cow position:chr20:34207019-34207191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:4-182
               
               
               Cow position:chr20:354853-354671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:4-192
               
               
               Cow position:chr20:5703521-5703709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):57, 165

               
               
               Conread position:4-198
               
               
               Cow position:chr20:35442238-35442038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 133

               
               
               Conread position:4-199
               
               
               Cow position:chr20:3599351-3599158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:4-203
               
               
               Cow position:chr20:28594330-28594540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 153

               
               
               Conread position:4-204
               
               
               Cow position:chr20:4945203-4945001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:165
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:4-208
               
               
               Cow position:chr20:17251762-17251972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:4-214
               
               
               Cow position:chr20:23590703-23590494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:4-214
               
               
               Cow position:chr20:36741520-36741719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:4-218
               
               
               Cow position:chr20:14490294-14490504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):19, 112

               
               
               Conread position:4-219
               
               
               Cow position:chr20:27315026-27315238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:4-220
               
               
               Cow position:chr20:11359587-11359374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:4-220
               
               
               Cow position:chr20:17370201-17369980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):59, 46

               
               
               Conread position:4-220
               
               
               Cow position:chr20:20967371-20967581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:4-220
               
               
               Cow position:chr20:23936134-23935915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:4-220
               
               
               Cow position:chr20:25953312-25953529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 99

               
               
               Conread position:4-223
               
               
               Cow position:chr20:4999062-4998839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:4-223
               
               
               Cow position:chr20:10200396-10200618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:5-204
               
               
               Cow position:chr20:11045724-11045923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:5-220
               
               
               Cow position:chr20:11542101-11541881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 145

               
               
               Conread position:5-237
               
               
               Cow position:chr20:29754834-29755061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):58, 20

               
               
               Conread position:6-181
               
               
               Cow position:chr20:22959297-22959118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-182
               
               
               Cow position:chr20:33067310-33067132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):7, 107

               
               
               Conread position:6-214
               
               
               Cow position:chr20:10913293-10913081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 135

               
               
               Conread position:6-233
               
               
               Cow position:chr20:35146071-35146296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:8-184
               
               
               Cow position:chr20:18487977-18488156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:8-204
               
               
               Cow position:chr20:28935588-28935394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:8-204
               
               
               Cow position:chr20:36097571-36097772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 190

               
               
               Conread position:10-204
               
               
               Cow position:chr20:5364980-5365177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):11, 170

               
               
               Conread position:10-204
               
               
               Cow position:chr20:7934334-7934527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 110

               
               
               Conread position:10-216
               
               
               Cow position:chr20:33076773-33076563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:10-220
               
               
               Cow position:chr20:11499062-11499271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):11, 87

               
               
               Conread position:10-223
               
               
               Cow position:chr20:2316375-2316154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):16, 108

               
               
               Conread position:10-223
               
               
               Cow position:chr20:32636277-32636068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:12-174
               
               
               Cow position:chr20:18831826-18831661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):14, 112

               
               
               Conread position:13-240
               
               
               Cow position:chr20:32523522-32523751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 99

               
               
               Conread position:14-184
               
               
               Cow position:chr20:38664153-38664322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:15-183
               
               
               Cow position:chr20:6848956-6849123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):54, 91

               
               
               Conread position:15-226
               
               
               Cow position:chr20:13023441-13023230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):52, 85

               
               
               Conread position:18-208
               
               
               Cow position:chr20:19919752-19919565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:18-208
               
               
               Cow position:chr20:27323330-27323521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):31, 180

               
               
               Conread position:19-198
               
               
               Cow position:chr20:33435090-33434916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-199
               
               
               Cow position:chr20:5078337-5078521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 138

               
               
               Conread position:19-199
               
               
               Cow position:chr20:16548213-16548028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 181

               
               
               Conread position:19-199
               
               
               Cow position:chr20:25474618-25474793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):47, 71

               
               
               Conread position:19-201
               
               
               Cow position:chr20:34202700-34202888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr20:1139702-1139519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):44, 32

               
               
               Conread position:19-204
               
               
               Cow position:chr20:7417102-7416913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):46, 180

               
               
               Conread position:19-211
               
               
               Cow position:chr20:35589619-35589429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:19-214
               
               
               Cow position:chr20:28296359-28296557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-217
               
               
               Cow position:chr20:11002466-11002664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:19-221
               
               
               Cow position:chr20:36842641-36842860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:19-226
               
               
               Cow position:chr20:12126239-12126027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:21-220
               
               
               Cow position:chr20:35130398-35130599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 70

               
               
               Conread position:22-219
               
               
               Cow position:chr20:24711909-24712104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):43, 142

               
               
               Conread position:24-185
               
               
               Cow position:chr20:10188345-10188505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:24-204
               
               
               Cow position:chr20:31845215-31845039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 97

               
               
               Conread position:24-223
               
               
               Cow position:chr20:14282990-14283194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:24-228
               
               
               Cow position:chr20:34221549-34221752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:25-168
               
               
               Cow position:chr20:2743066-2742921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:25-185
               
               
               Cow position:chr20:34847977-34848133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:25-191
               
               
               Cow position:chr20:20898519-20898353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:25-193
               
               
               Cow position:chr20:20934661-20934496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:25-195
               
               
               Cow position:chr20:17544695-17544867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr20:9730068-9730250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):79, 39

               
               
               Conread position:25-201
               
               
               Cow position:chr20:14739748-14739574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr20:2822941-2823126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 162

               
               
               Conread position:25-204
               
               
               Cow position:chr20:19201602-19201782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr20:28249251-28249431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-206
               
               
               Cow position:chr20:11008241-11008424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-211
               
               
               Cow position:chr20:22851549-22851732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-212
               
               
               Cow position:chr20:297936-297748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:25-212
               
               
               Cow position:chr20:20459663-20459848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:25-213
               
               
               Cow position:chr20:18763210-18763397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):171, 40

               
               
               Conread position:25-213
               
               
               Cow position:chr20:32088461-32088650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-214
               
               
               Cow position:chr20:6248530-6248340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):42, 138

               
               
               Conread position:25-215
               
               
               Cow position:chr20:21291731-21291923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):38, 168

               
               
               Conread position:25-215
               
               
               Cow position:chr20:21345504-21345700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-219
               
               
               Cow position:chr20:3035404-3035602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):40, 176

               
               
               Conread position:25-220
               
               
               Cow position:chr20:6054438-6054244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):40, 129

               
               
               Conread position:25-221
               
               
               Cow position:chr20:3141645-3141841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:25-223
               
               
               Cow position:chr20:19328459-19328668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr20:25464974-25464779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:25-223
               
               
               Cow position:chr20:34097882-34097681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):39, 189

               
               
               Conread position:25-224
               
               
               Cow position:chr20:37273069-37273262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 79

               
               
               Conread position:26-217
               
               
               Cow position:chr20:14433349-14433158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 66

               
               
               Conread position:27-199
               
               
               Cow position:chr20:34271400-34271574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:27-217
               
               
               Cow position:chr20:24883292-24883101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):27, 170

               
               
               Conread position:28-199
               
               
               Cow position:chr20:12581880-12581712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:28-201
               
               
               Cow position:chr20:17606893-17606719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 170

               
               
               Conread position:28-204
               
               
               Cow position:chr20:3255110-3255283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:28-204
               
               
               Cow position:chr20:9034142-9033967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:28-211
               
               
               Cow position:chr20:20984066-20984252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 170

               
               
               Conread position:28-215
               
               
               Cow position:chr20:39398555-39398739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:28-216
               
               
               Cow position:chr20:38089987-38090175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:28-217
               
               
               Cow position:chr20:36239321-36239511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:28-218
               
               
               Cow position:chr20:23543826-23543634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:28-218
               
               
               Cow position:chr20:24026022-24025830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:28-219
               
               
               Cow position:chr20:26850712-26850517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr20:7426123-7425930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-220
               
               
               Cow position:chr20:35176703-35176508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-222
               
               
               Cow position:chr20:13068078-13067883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 162

               
               
               Conread position:28-223
               
               
               Cow position:chr20:30744647-30744454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:28-223
               
               
               Cow position:chr20:33359399-33359199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 126

               
               
               Conread position:28-223
               
               
               Cow position:chr20:35741842-35742039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr20:1824554-1824359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:28-224
               
               
               Cow position:chr20:14897811-14898008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:28-225
               
               
               Cow position:chr20:16818493-16818688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-225
               
               
               Cow position:chr20:39417829-39417632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:28-226
               
               
               Cow position:chr20:4892045-4891849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-228
               
               
               Cow position:chr20:31927388-31927187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:28-229
               
               
               Cow position:chr20:14133719-14133515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-218
               
               
               Cow position:chr20:13829334-13829522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 140

               
               
               Conread position:29-218
               
               
               Cow position:chr20:39325466-39325654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):37, 136

               
               
               Conread position:29-223
               
               
               Cow position:chr20:15118351-15118547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:29-225
               
               
               Cow position:chr20:31077856-31078056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:30-199
               
               
               Cow position:chr20:5814642-5814814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:31-186
               
               
               Cow position:chr20:16291765-16291922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-192
               
               
               Cow position:chr20:23880029-23879869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):33, 80

               
               
               Conread position:32-220
               
               
               Cow position:chr20:34251594-34251406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):34, 163

               
               
               Conread position:32-221
               
               
               Cow position:chr20:34397354-34397169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:35-208
               
               
               Cow position:chr20:31468581-31468402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:35-223
               
               
               Cow position:chr20:37609703-37609891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):181, 161

               
               
               Conread position:36-185
               
               
               Cow position:chr20:4596706-4596855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 129

               
               
               Conread position:36-199
               
               
               Cow position:chr20:15760491-15760324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:36-204
               
               
               Cow position:chr20:29990365-29990195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:36-215
               
               
               Cow position:chr20:20202301-20202480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 90

               
               
               Conread position:36-219
               
               
               Cow position:chr20:11548642-11548466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 70

               
               
               Conread position:36-220
               
               
               Cow position:chr20:11611761-11611946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:36-221
               
               
               Cow position:chr20:30639701-30639512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-222
               
               
               Cow position:chr20:39675324-39675134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-223
               
               
               Cow position:chr20:10052816-10053010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):81, 31

               
               
               Conread position:36-225
               
               
               Cow position:chr20:25021510-25021699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):27, 175

               
               
               Conread position:37-199
               
               
               Cow position:chr20:8679581-8679416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:37-204
               
               
               Cow position:chr20:30755362-30755532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr20:26424489-26424664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:38-213
               
               
               Cow position:chr20:34349131-34348956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 158

               
               
               Conread position:40-186
               
               
               Cow position:chr20:5104140-5103992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-199
               
               
               Cow position:chr20:33462312-33462473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-220
               
               
               Cow position:chr20:17840831-17841005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 87

               
               
               Conread position:40-223
               
               
               Cow position:chr20:23966844-23967026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 14

               
               
               Conread position:40-226
               
               
               Cow position:chr20:21344553-21344739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 155

               
               
               Conread position:41-204
               
               
               Cow position:chr20:11340717-11340556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 69

               
               
               Conread position:42-204
               
               
               Cow position:chr20:14755752-14755594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:42-215
               
               
               Cow position:chr20:10715272-10715443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:42-228
               
               
               Cow position:chr20:14556666-14556478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 170

               
               
               Conread position:42-229
               
               
               Cow position:chr20:19623152-19622975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):59, 21

               
               
               Conread position:43-194
               
               
               Cow position:chr20:17733470-17733317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:48-204
               
               
               Cow position:chr20:32619321-32619163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:50-204
               
               
               Cow position:chr20:6473829-6473983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:50-219
               
               
               Cow position:chr20:5172708-5172874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):15, 76

               
               
               Conread position:50-219
               
               
               Cow position:chr20:18500623-18500791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 142

               
               
               Conread position:52-224
               
               
               Cow position:chr20:6501987-6502157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:53-208
               
               
               Cow position:chr20:39518106-39518264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):13, 30

               
               
               Conread position:54-201
               
               
               Cow position:chr20:39694996-39694848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 144

               
               
               Conread position:58-218
               
               
               Cow position:chr20:5729677-5729836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 140

               
               
               Conread position:62-185
               
               
               Cow position:chr20:10469152-10469275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr20:35310436-35310586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:62-213
               
               
               Cow position:chr20:5268733-5268584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr20:41514872-41515028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr20:41704265-41704424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):53, 135

               
               
               Conread position:62-220
               
               
               Cow position:chr20:14460491-14460650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr20:20926519-20926361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr20:22937209-22937051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:62-231
               
               
               Cow position:chr20:23062260-23062425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:62-232
               
               
               Cow position:chr20:13994924-13995087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:62-237
               
               
               Cow position:chr20:17524382-17524559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):138, 169

               
               
               Conread position:63-204
               
               
               Cow position:chr20:35605318-35605451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:63-204
               
               
               Cow position:chr20:42897866-42897723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:63-205
               
               
               Cow position:chr20:32067382-32067239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:63-215
               
               
               Cow position:chr20:14980394-14980246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):131, 30

               
               
               Conread position:63-218
               
               
               Cow position:chr20:11135642-11135489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:64-180
               
               
               Cow position:chr20:30817630-30817746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-212
               
               
               Cow position:chr20:6370401-6370551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:64-214
               
               
               Cow position:chr20:23548866-23549014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:64-221
               
               
               Cow position:chr20:34410594-34410439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):51, 39

               
               
               Conread position:64-225
               
               
               Cow position:chr20:41323252-41323091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):148, 104

               
               
               Conread position:65-214
               
               
               Cow position:chr20:10486245-10486099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:65-226
               
               
               Cow position:chr20:36135474-36135630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:67-213
               
               
               Cow position:chr20:30203418-30203567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):57, 131

               
               
               Conread position:71-213
               
               
               Cow position:chr20:11909568-11909428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:75-214
               
               
               Cow position:chr20:33557516-33557654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:75-223
               
               
               Cow position:chr20:23384416-23384562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:80-185
               
               
               Cow position:chr20:27733026-27733131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:84
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-186
               
               
               Cow position:chr20:26055099-26054993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-204
               
               
               Cow position:chr20:20892550-20892426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):122, 110

               
               
               Conread position:82-222
               
               
               Cow position:chr20:34918535-34918673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:85-180
               
               
               Cow position:chr20:30821553-30821648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:79
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-214
               
               
               Cow position:chr20:15505043-15505172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-220
               
               
               Cow position:chr20:40442334-40442199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:88-214
               
               
               Cow position:chr20:11865803-11865683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:89-220
               
               
               Cow position:chr20:23168456-23168587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-223
               
               
               Cow position:chr20:26562080-26561944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:91-219
               
               
               Cow position:chr20:7659090-7658965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:93-231
               
               
               Cow position:chr20:19312530-19312389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:96-216
               
               
               Cow position:chr20:18400078-18400195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:106-214
               
               
               Cow position:chr20:36365970-36366076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:1-173
               
               
               Cow position:chr21:7377860-7377684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-191
               
               
               Cow position:chr21:30835432-30835623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):66, 18

               
               
               Conread position:1-192
               
               
               Cow position:chr21:46809699-46809506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):19, 146

               
               
               Conread position:1-199
               
               
               Cow position:chr21:438631-438821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 15

               
               
               Conread position:1-201
               
               
               Cow position:chr21:23535775-23535978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 197

               
               
               Conread position:1-204
               
               
               Cow position:chr21:957739-957939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-204
               
               
               Cow position:chr21:16152510-16152710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):64, 18

               
               
               Conread position:1-205
               
               
               Cow position:chr21:22210180-22209972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:1-208
               
               
               Cow position:chr21:40475565-40475775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr21:10817097-10817313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:1-213
               
               
               Cow position:chr21:18568573-18568357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-214
               
               
               Cow position:chr21:5218768-5218988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):12, 120

               
               
               Conread position:1-221
               
               
               Cow position:chr21:8986088-8986312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-221
               
               
               Cow position:chr21:10004819-10004592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):12, 44

               
               
               Conread position:1-221
               
               
               Cow position:chr21:40266191-40266416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:1-223
               
               
               Cow position:chr21:27677548-27677770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:1-232
               
               
               Cow position:chr21:17183983-17184221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):11, 138

               
               
               Conread position:2-195
               
               
               Cow position:chr21:23672816-23673006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):65, 11

               
               
               Conread position:2-220
               
               
               Cow position:chr21:9504929-9505158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:3-184
               
               
               Cow position:chr21:7066317-7066135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:3-198
               
               
               Cow position:chr21:41140653-41140451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr21:32392993-32392798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):106, 21

               
               
               Conread position:3-204
               
               
               Cow position:chr21:9477228-9477434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 124

               
               
               Conread position:3-204
               
               
               Cow position:chr21:34010329-34010125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 99

               
               
               Conread position:3-214
               
               
               Cow position:chr21:19196100-19195877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-214
               
               
               Cow position:chr21:27712179-27711953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr21:17511840-17512054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 157

               
               
               Conread position:3-217
               
               
               Cow position:chr21:6153865-6154084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):22, 167

               
               
               Conread position:3-218
               
               
               Cow position:chr21:29658340-29658559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:3-220
               
               
               Cow position:chr21:31760149-31759941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr21:44829695-44829474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 195

               
               
               Conread position:3-221
               
               
               Cow position:chr21:5214414-5214639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 200

               
               
               Conread position:3-222
               
               
               Cow position:chr21:6584074-6583851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 68

               
               
               Conread position:3-223
               
               
               Cow position:chr21:18471642-18471863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:3-224
               
               
               Cow position:chr21:13090438-13090663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 199

               
               
               Conread position:3-224
               
               
               Cow position:chr21:31652452-31652675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):18, 197

               
               
               Conread position:3-228
               
               
               Cow position:chr21:26828907-26828677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:3-228
               
               
               Cow position:chr21:31659083-31658860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 127

               
               
               Conread position:3-229
               
               
               Cow position:chr21:13580477-13580705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 103

               
               
               Conread position:3-232
               
               
               Cow position:chr21:13656572-13656338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):20, 90

               
               
               Conread position:4-174
               
               
               Cow position:chr21:28191421-28191589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-182
               
               
               Cow position:chr21:10410295-10410471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):6, 10

               
               
               Conread position:4-185
               
               
               Cow position:chr21:10114265-10114082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 88

               
               
               Conread position:4-186
               
               
               Cow position:chr21:17193680-17193496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:4-186
               
               
               Cow position:chr21:29418637-29418823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-192
               
               
               Cow position:chr21:868857-868661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):11, 112

               
               
               Conread position:4-197
               
               
               Cow position:chr21:32339675-32339482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):21, 137

               
               
               Conread position:4-199
               
               
               Cow position:chr21:34738648-34738836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):7, 126

               
               
               Conread position:4-203
               
               
               Cow position:chr21:40291681-40291480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 51

               
               
               Conread position:4-204
               
               
               Cow position:chr21:745246-745440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):63, 101

               
               
               Conread position:4-204
               
               
               Cow position:chr21:27810455-27810662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-212
               
               
               Cow position:chr21:14452305-14452509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):17, 6

               
               
               Conread position:4-212
               
               
               Cow position:chr21:17983051-17983247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:4-212
               
               
               Cow position:chr21:22525111-22524903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-217
               
               
               Cow position:chr21:29011896-29011690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:4-219
               
               
               Cow position:chr21:45971107-45970895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 122

               
               
               Conread position:4-220
               
               
               Cow position:chr21:1511358-1511569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 114

               
               
               Conread position:4-220
               
               
               Cow position:chr21:25344932-25345150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:4-220
               
               
               Cow position:chr21:37928720-37928937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):61, 163

               
               
               Conread position:4-225
               
               
               Cow position:chr21:27569104-27568870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 21

               
               
               Conread position:4-231
               
               
               Cow position:chr21:38482448-38482678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 128

               
               
               Conread position:5-214
               
               
               Cow position:chr21:40589412-40589200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:6-185
               
               
               Cow position:chr21:48637691-48637504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:6-199
               
               
               Cow position:chr21:41041015-41041212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):7, 99

               
               
               Conread position:6-203
               
               
               Cow position:chr21:11099900-11099702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 163

               
               
               Conread position:6-208
               
               
               Cow position:chr21:13225786-13225991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):8, 146

               
               
               Conread position:6-214
               
               
               Cow position:chr21:15584348-15584144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 119

               
               
               Conread position:6-217
               
               
               Cow position:chr21:11779471-11779253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):14, 55

               
               
               Conread position:6-217
               
               
               Cow position:chr21:21907363-21907158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:6-223
               
               
               Cow position:chr21:12310548-12310761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):8, 61

               
               
               Conread position:6-224
               
               
               Cow position:chr21:42189690-42189474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 110

               
               
               Conread position:6-225
               
               
               Cow position:chr21:646246-646024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):16, 86

               
               
               Conread position:7-185
               
               
               Cow position:chr21:6317617-6317434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:7-203
               
               
               Cow position:chr21:8713892-8713689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 197

               
               
               Conread position:7-228
               
               
               Cow position:chr21:27744101-27744322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 9

               
               
               Conread position:8-208
               
               
               Cow position:chr21:32648116-32647912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:8-218
               
               
               Cow position:chr21:13588833-13589048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):16, 89

               
               
               Conread position:8-218
               
               
               Cow position:chr21:48482457-48482247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):8, 110

               
               
               Conread position:8-221
               
               
               Cow position:chr21:38918273-38918489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):15, 34

               
               
               Conread position:9-204
               
               
               Cow position:chr21:4108845-4109045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 136

               
               
               Conread position:10-192
               
               
               Cow position:chr21:24797728-24797913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):15, 119

               
               
               Conread position:10-204
               
               
               Cow position:chr21:30977185-30976997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 16

               
               
               Conread position:10-206
               
               
               Cow position:chr21:19958285-19958487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 198

               
               
               Conread position:10-221
               
               
               Cow position:chr21:12348836-12349053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 191

               
               
               Conread position:10-222
               
               
               Cow position:chr21:8545947-8545729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:11-218
               
               
               Cow position:chr21:742359-742561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:12-185
               
               
               Cow position:chr21:19161785-19161966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:12-202
               
               
               Cow position:chr21:10072240-10072433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 7

               
               
               Conread position:16-192
               
               
               Cow position:chr21:23586966-23587130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-218
               
               
               Cow position:chr21:33169677-33169879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 75

               
               
               Conread position:16-231
               
               
               Cow position:chr21:32272004-32272224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:19-185
               
               
               Cow position:chr21:41287707-41287545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:19-185
               
               
               Cow position:chr21:42017517-42017350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):46, 133

               
               
               Conread position:19-192
               
               
               Cow position:chr21:11353146-11353322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr21:14247221-14247406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 13

               
               
               Conread position:19-204
               
               
               Cow position:chr21:18059875-18059690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 178

               
               
               Conread position:19-204
               
               
               Cow position:chr21:47713922-47713737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 71

               
               
               Conread position:19-215
               
               
               Cow position:chr21:33805-34016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-215
               
               
               Cow position:chr21:11027269-11027078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:19-215
               
               
               Cow position:chr21:37835670-37835866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:19-218
               
               
               Cow position:chr21:41974292-41974084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 201

               
               
               Conread position:19-223
               
               
               Cow position:chr21:27145906-27145696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 198

               
               
               Conread position:21-220
               
               
               Cow position:chr21:20416606-20416808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):167, 30

               
               
               Conread position:22-202
               
               
               Cow position:chr21:15545271-15545095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 19

               
               
               Conread position:24-199
               
               
               Cow position:chr21:41918149-41917974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):43, 22

               
               
               Conread position:24-208
               
               
               Cow position:chr21:3177938-3178118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 80

               
               
               Conread position:24-212
               
               
               Cow position:chr21:10148088-10148276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 82

               
               
               Conread position:24-214
               
               
               Cow position:chr21:42144915-42145098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 12

               
               
               Conread position:24-217
               
               
               Cow position:chr21:21940316-21940128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:24-217
               
               
               Cow position:chr21:40930384-40930196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 102

               
               
               Conread position:24-218
               
               
               Cow position:chr21:3135778-3135584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):41, 141

               
               
               Conread position:24-220
               
               
               Cow position:chr21:38720341-38720533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 34

               
               
               Conread position:24-222
               
               
               Cow position:chr21:938110-938305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):41, 111

               
               
               Conread position:24-223
               
               
               Cow position:chr21:27409641-27409449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:24-225
               
               
               Cow position:chr21:19220707-19220507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):41, 174

               
               
               Conread position:25-186
               
               
               Cow position:chr21:11644874-11644714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:25-186
               
               
               Cow position:chr21:12739172-12739340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 40

               
               
               Conread position:25-186
               
               
               Cow position:chr21:20213685-20213519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:25-192
               
               
               Cow position:chr21:30231602-30231438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr21:30970027-30970193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 86

               
               
               Conread position:25-192
               
               
               Cow position:chr21:36115695-36115865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-197
               
               
               Cow position:chr21:23568320-23568488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:25-198
               
               
               Cow position:chr21:10657011-10656837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:25-198
               
               
               Cow position:chr21:28244562-28244731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:25-201
               
               
               Cow position:chr21:20153048-20153222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):41, 61

               
               
               Conread position:25-202
               
               
               Cow position:chr21:43655793-43655970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):6, 63

               
               
               Conread position:25-203
               
               
               Cow position:chr21:11182645-11182818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:25-204
               
               
               Cow position:chr21:874614-874795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr21:28882273-28882453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:25-204
               
               
               Cow position:chr21:30938574-30938396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:25-208
               
               
               Cow position:chr21:1562449-1562256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-208
               
               
               Cow position:chr21:8494732-8494917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:25-208
               
               
               Cow position:chr21:36763153-36763335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 101

               
               
               Conread position:25-208
               
               
               Cow position:chr21:41621217-41621400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):33, 171

               
               
               Conread position:25-212
               
               
               Cow position:chr21:30657962-30658136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-213
               
               
               Cow position:chr21:47132-47327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr21:13104311-13104119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr21:19083495-19083307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:25-214
               
               
               Cow position:chr21:27863421-27863239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:25-214
               
               
               Cow position:chr21:49699948-49699756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr21:31246362-31246548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:25-216
               
               
               Cow position:chr21:12916329-12916139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 164

               
               
               Conread position:25-216
               
               
               Cow position:chr21:16796943-16797132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):40, 144

               
               
               Conread position:25-216
               
               
               Cow position:chr21:47860690-47860884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:25-217
               
               
               Cow position:chr21:16914870-16915061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:25-219
               
               
               Cow position:chr21:15305207-15305013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:25-219
               
               
               Cow position:chr21:36121319-36121516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 135

               
               
               Conread position:25-220
               
               
               Cow position:chr21:4281783-4281596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):184, 49

               
               
               Conread position:25-220
               
               
               Cow position:chr21:7539436-7539237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 171

               
               
               Conread position:25-220
               
               
               Cow position:chr21:16793887-16794077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):91, 40

               
               
               Conread position:25-221
               
               
               Cow position:chr21:28792502-28792701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-221
               
               
               Cow position:chr21:44724276-44724092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-222
               
               
               Cow position:chr21:39319318-39319121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-223
               
               
               Cow position:chr21:41437700-41437897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:25-224
               
               
               Cow position:chr21:9301315-9301511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:25-229
               
               
               Cow position:chr21:58542-58739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):151, 22

               
               
               Conread position:25-229
               
               
               Cow position:chr21:37640654-37640865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:28-171
               
               
               Cow position:chr21:42905303-42905158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr21:14360460-14360619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr21:14745864-14746023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr21:24266471-24266310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr21:42355725-42355892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-186
               
               
               Cow position:chr21:19826313-19826473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-191
               
               
               Cow position:chr21:20160771-20160935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 140

               
               
               Conread position:28-191
               
               
               Cow position:chr21:47465023-47464862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:28-197
               
               
               Cow position:chr21:10264128-10264298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:28-199
               
               
               Cow position:chr21:16604222-16604047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr21:28027891-28028065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr21:10751139-10751316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:28-204
               
               
               Cow position:chr21:17842902-17842725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 50

               
               
               Conread position:28-204
               
               
               Cow position:chr21:18721012-18720835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:28-204
               
               
               Cow position:chr21:20193065-20193243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr21:41043224-41043047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-204
               
               
               Cow position:chr21:42501145-42501321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):40, 84

               
               
               Conread position:28-204
               
               
               Cow position:chr21:44251748-44251571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 142

               
               
               Conread position:28-207
               
               
               Cow position:chr21:641682-641857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-207
               
               
               Cow position:chr21:17519116-17519301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-213
               
               
               Cow position:chr21:71682-71861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:28-213
               
               
               Cow position:chr21:14639019-14639206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:28-213
               
               
               Cow position:chr21:47760863-47761052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr21:700697-700508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr21:12322592-12322779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:28-215
               
               
               Cow position:chr21:13817487-13817680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr21:28919428-28919247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):176, 37

               
               
               Conread position:28-218
               
               
               Cow position:chr21:11174334-11174527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 185

               
               
               Conread position:28-218
               
               
               Cow position:chr21:13985681-13985872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 183

               
               
               Conread position:28-219
               
               
               Cow position:chr21:19407480-19407289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 183

               
               
               Conread position:28-219
               
               
               Cow position:chr21:34722904-34723094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):96, 37

               
               
               Conread position:28-220
               
               
               Cow position:chr21:19248893-19248699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:28-220
               
               
               Cow position:chr21:45151534-45151339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:28-221
               
               
               Cow position:chr21:18155471-18155277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 115

               
               
               Conread position:28-221
               
               
               Cow position:chr21:42328570-42328376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:28-222
               
               
               Cow position:chr21:15869785-15869975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:28-222
               
               
               Cow position:chr21:22211348-22211545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr21:8431005-8430805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:28-223
               
               
               Cow position:chr21:17637987-17638184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 135

               
               
               Conread position:28-225
               
               
               Cow position:chr21:6291841-6292037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:28-225
               
               
               Cow position:chr21:8959585-8959784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 197

               
               
               Conread position:28-225
               
               
               Cow position:chr21:38728249-38728447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:28-229
               
               
               Cow position:chr21:20199336-20199132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 153

               
               
               Conread position:28-229
               
               
               Cow position:chr21:24296673-24296470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:28-229
               
               
               Cow position:chr21:24343172-24342965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:29-201
               
               
               Cow position:chr21:2537043-2536869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:29-204
               
               
               Cow position:chr21:10829774-10829597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-204
               
               
               Cow position:chr21:37706319-37706142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-214
               
               
               Cow position:chr21:22720668-22720847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:29-214
               
               
               Cow position:chr21:27521243-27521061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:29-219
               
               
               Cow position:chr21:19990721-19990534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 68

               
               
               Conread position:29-220
               
               
               Cow position:chr21:40820757-40820565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 66

               
               
               Conread position:30-207
               
               
               Cow position:chr21:18341316-18341492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 141

               
               
               Conread position:30-214
               
               
               Cow position:chr21:16498613-16498793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:31-191
               
               
               Cow position:chr21:32536494-32536648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):34, 91

               
               
               Conread position:31-202
               
               
               Cow position:chr21:48205123-48204951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):20, 15

               
               
               Conread position:32-218
               
               
               Cow position:chr21:12530153-12529963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 80

               
               
               Conread position:32-222
               
               
               Cow position:chr21:19059994-19059802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:32-229
               
               
               Cow position:chr21:19394784-19394580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:35-186
               
               
               Cow position:chr21:29069224-29069071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:35-200
               
               
               Cow position:chr21:31258568-31258735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:35-201
               
               
               Cow position:chr21:41482873-41482708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:35-204
               
               
               Cow position:chr21:9278627-9278798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:35-205
               
               
               Cow position:chr21:18495323-18495486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:35-214
               
               
               Cow position:chr21:21772191-21772370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 160

               
               
               Conread position:35-217
               
               
               Cow position:chr21:6834151-6834331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:35-225
               
               
               Cow position:chr21:22718681-22718496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:36-200
               
               
               Cow position:chr21:15271334-15271173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:36-208
               
               
               Cow position:chr21:7424911-7424739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 94

               
               
               Conread position:36-213
               
               
               Cow position:chr21:36765715-36765535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-223
               
               
               Cow position:chr21:10130247-10130438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-228
               
               
               Cow position:chr21:7357645-7357836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 172

               
               
               Conread position:36-235
               
               
               Cow position:chr21:31278286-31278489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):51, 29

               
               
               Conread position:37-188
               
               
               Cow position:chr21:8351190-8351040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 81

               
               
               Conread position:37-205
               
               
               Cow position:chr21:6713420-6713254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:37-221
               
               
               Cow position:chr21:10743490-10743678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:38-215
               
               
               Cow position:chr21:10660789-10660612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 131

               
               
               Conread position:38-221
               
               
               Cow position:chr21:18449857-18450041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):27, 160

               
               
               Conread position:39-194
               
               
               Cow position:chr21:34727313-34727464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:39-208
               
               
               Cow position:chr21:3379646-3379479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:39-214
               
               
               Cow position:chr21:45537290-45537470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 58

               
               
               Conread position:39-215
               
               
               Cow position:chr21:20165747-20165921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 73

               
               
               Conread position:39-220
               
               
               Cow position:chr21:11006665-11006484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:39-223
               
               
               Cow position:chr21:25127710-25127902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-204
               
               
               Cow position:chr21:17531236-17531405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-211
               
               
               Cow position:chr21:17890409-17890579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:40-212
               
               
               Cow position:chr21:10009710-10009538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):25, 125

               
               
               Conread position:40-212
               
               
               Cow position:chr21:40551636-40551464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:40-214
               
               
               Cow position:chr21:42047935-42047761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 129

               
               
               Conread position:40-220
               
               
               Cow position:chr21:11706660-11706472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 82

               
               
               Conread position:40-222
               
               
               Cow position:chr21:43316788-43316603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-223
               
               
               Cow position:chr21:26018486-26018671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-223
               
               
               Cow position:chr21:41194048-41193864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 91

               
               
               Conread position:40-225
               
               
               Cow position:chr21:17403743-17403560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:40-228
               
               
               Cow position:chr21:39278190-39277997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-223
               
               
               Cow position:chr21:17559815-17559629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 155

               
               
               Conread position:42-215
               
               
               Cow position:chr21:24061086-24060913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 140

               
               
               Conread position:43-192
               
               
               Cow position:chr21:15444975-15444824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:47-223
               
               
               Cow position:chr21:30794312-30794134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:48-212
               
               
               Cow position:chr21:8880238-8880075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):17, 64

               
               
               Conread position:50-184
               
               
               Cow position:chr21:40916600-40916731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 45

               
               
               Conread position:50-186
               
               
               Cow position:chr21:16120044-16119910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 83

               
               
               Conread position:50-212
               
               
               Cow position:chr21:46627360-46627517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 26

               
               
               Conread position:50-219
               
               
               Cow position:chr21:14464700-14464871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-219
               
               
               Cow position:chr21:37495827-37495658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:50-223
               
               
               Cow position:chr21:15200868-15201045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):14, 33

               
               
               Conread position:51-214
               
               
               Cow position:chr21:41738028-41738187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):114, 61

               
               
               Conread position:54-207
               
               
               Cow position:chr21:24350968-24351124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:56-231
               
               
               Cow position:chr21:16099442-16099265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 144

               
               
               Conread position:57-186
               
               
               Cow position:chr21:37014302-37014173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-212
               
               
               Cow position:chr21:37479468-37479311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:60-220
               
               
               Cow position:chr21:30359218-30359062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):152, 68

               
               
               Conread position:62-185
               
               
               Cow position:chr21:42441758-42441881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-189
               
               
               Cow position:chr21:47784723-47784850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-197
               
               
               Cow position:chr21:38943477-38943345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:62-201
               
               
               Cow position:chr21:33384371-33384233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr21:13134731-13134865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr21:49644959-49644818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:62-205
               
               
               Cow position:chr21:22036729-22036872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr21:7535415-7535266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):135, 92

               
               
               Conread position:62-213
               
               
               Cow position:chr21:9311183-9311331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr21:19176373-19176523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):147, 42

               
               
               Conread position:62-214
               
               
               Cow position:chr21:23980051-23979900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr21:41156001-41156150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr21:17911127-17910975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr21:9873452-9873603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr21:34209885-34209732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr21:7697855-7698012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr21:26392055-26392212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr21:5345009-5345168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-222
               
               
               Cow position:chr21:24757071-24757226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):150, 69

               
               
               Conread position:62-223
               
               
               Cow position:chr21:19236840-19236682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):157, 128

               
               
               Conread position:62-238
               
               
               Cow position:chr21:873768-873940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:63-183
               
               
               Cow position:chr21:3360883-3360767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:63-185
               
               
               Cow position:chr21:28237576-28237448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:63-208
               
               
               Cow position:chr21:5476711-5476855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:63-215
               
               
               Cow position:chr21:48242924-48242764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:63-223
               
               
               Cow position:chr21:40821763-40821609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:64-185
               
               
               Cow position:chr21:20185381-20185498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:64-199
               
               
               Cow position:chr21:26454872-26454737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-219
               
               
               Cow position:chr21:49144870-49144715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-227
               
               
               Cow position:chr21:19825263-19825102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:65-191
               
               
               Cow position:chr21:45446668-45446795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:65-204
               
               
               Cow position:chr21:8961352-8961213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-214
               
               
               Cow position:chr21:34737293-34737441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:66-207
               
               
               Cow position:chr21:12473926-12473789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:66-219
               
               
               Cow position:chr21:42227564-42227413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:66-224
               
               
               Cow position:chr21:41829246-41829094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:68-186
               
               
               Cow position:chr21:17929491-17929372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:69-221
               
               
               Cow position:chr21:40593356-40593503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):133, 41

               
               
               Conread position:70-225
               
               
               Cow position:chr21:20925329-20925170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 145

               
               
               Conread position:75-213
               
               
               Cow position:chr21:18578427-18578286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:75-215
               
               
               Cow position:chr21:12293165-12293305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):74, 89

               
               
               Conread position:80-220
               
               
               Cow position:chr21:5488898-5489040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 14

               
               
               Conread position:80-223
               
               
               Cow position:chr21:26002354-26002208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:82-208
               
               
               Cow position:chr21:17151466-17151590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:85-207
               
               
               Cow position:chr21:20585524-20585405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:85-219
               
               
               Cow position:chr21:18355351-18355491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:88-214
               
               
               Cow position:chr21:28955777-28955899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:91-218
               
               
               Cow position:chr21:40432627-40432746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:95-213
               
               
               Cow position:chr21:46142318-46142437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:96-218
               
               
               Cow position:chr21:49627396-49627273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:97-217
               
               
               Cow position:chr21:34456562-34456683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:93
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:104-219
               
               
               Cow position:chr21:38440606-38440721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):110, 92

               
               
               Conread position:104-223
               
               
               Cow position:chr21:43220172-43220054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:105-217
               
               
               Cow position:chr21:16676125-16676237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:128-224
               
               
               Cow position:chr21:43264982-43264886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-122
               
               
               Cow position:chr22:23398405-23398280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:1-147
               
               
               Cow position:chr22:25846323-25846175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 136

               
               
               Conread position:1-186
               
               
               Cow position:chr22:23181043-23180861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:1-192
               
               
               Cow position:chr22:16621177-16621383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:1-192
               
               
               Cow position:chr22:16845403-16845202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:1-192
               
               
               Cow position:chr22:18967159-18966970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:1-203
               
               
               Cow position:chr22:13930279-13930482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):7, 113

               
               
               Conread position:1-206
               
               
               Cow position:chr22:6852584-6852377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):12, 111

               
               
               Conread position:1-216
               
               
               Cow position:chr22:32661509-32661730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-218
               
               
               Cow position:chr22:10303015-10303229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):12, 163

               
               
               Conread position:1-218
               
               
               Cow position:chr22:12829613-12829393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:1-218
               
               
               Cow position:chr22:36432971-36432760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-219
               
               
               Cow position:chr22:6097018-6096801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 117

               
               
               Conread position:1-221
               
               
               Cow position:chr22:4583560-4583783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:1-223
               
               
               Cow position:chr22:1326420-1326640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):61, 94

               
               
               Conread position:1-223
               
               
               Cow position:chr22:11767051-11766825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 120

               
               
               Conread position:1-225
               
               
               Cow position:chr22:3430196-3430418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:1-225
               
               
               Cow position:chr22:40120877-40120654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:2-214
               
               
               Cow position:chr22:6289505-6289287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):29, 201

               
               
               Conread position:2-217
               
               
               Cow position:chr22:13720029-13719818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 15

               
               
               Conread position:3-185
               
               
               Cow position:chr22:44384497-44384308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):64, 21

               
               
               Conread position:3-192
               
               
               Cow position:chr22:24584066-24583881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:3-201
               
               
               Cow position:chr22:3301342-3301136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr22:1065102-1065309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):23, 200

               
               
               Conread position:3-204
               
               
               Cow position:chr22:4208995-4208790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr22:4736020-4736228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):26, 201

               
               
               Conread position:3-204
               
               
               Cow position:chr22:16797851-16797631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 211

               
               
               Conread position:3-204
               
               
               Cow position:chr22:26417280-26417482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 123

               
               
               Conread position:3-211
               
               
               Cow position:chr22:15950866-15950659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):20, 48

               
               
               Conread position:3-213
               
               
               Cow position:chr22:29962149-29961939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:3-213
               
               
               Cow position:chr22:32326796-32327010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):20, 122

               
               
               Conread position:3-214
               
               
               Cow position:chr22:15959770-15959559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 22

               
               
               Conread position:3-214
               
               
               Cow position:chr22:16129139-16129355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 175

               
               
               Conread position:3-214
               
               
               Cow position:chr22:19414040-19413821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-214
               
               
               Cow position:chr22:22013747-22013960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 22

               
               
               Conread position:3-215
               
               
               Cow position:chr22:26134227-26134006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:3-220
               
               
               Cow position:chr22:26803815-26804040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 200

               
               
               Conread position:3-221
               
               
               Cow position:chr22:25205974-25205747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 202

               
               
               Conread position:3-223
               
               
               Cow position:chr22:15618601-15618830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-226
               
               
               Cow position:chr22:43977563-43977338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 54

               
               
               Conread position:3-231
               
               
               Cow position:chr22:15050179-15050411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:3-234
               
               
               Cow position:chr22:45104266-45104035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):62, 13

               
               
               Conread position:3-236
               
               
               Cow position:chr22:45374938-45375169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:4-183
               
               
               Cow position:chr22:1849078-1849257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:4-185
               
               
               Cow position:chr22:14378694-14378508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:4-191
               
               
               Cow position:chr22:12389097-12389292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-192
               
               
               Cow position:chr22:1776063-1776254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-192
               
               
               Cow position:chr22:8287185-8287371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:4-197
               
               
               Cow position:chr22:5712586-5712780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):11, 123

               
               
               Conread position:4-199
               
               
               Cow position:chr22:1714861-1714664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-201
               
               
               Cow position:chr22:8412530-8412729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 9

               
               
               Conread position:4-204
               
               
               Cow position:chr22:4156819-4156614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:4-204
               
               
               Cow position:chr22:32698762-32698966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-204
               
               
               Cow position:chr22:39602280-39602487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 194

               
               
               Conread position:4-208
               
               
               Cow position:chr22:6092650-6092457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:4-208
               
               
               Cow position:chr22:38977839-38978049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:4-209
               
               
               Cow position:chr22:8539885-8540083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:4-214
               
               
               Cow position:chr22:13866662-13866879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):22, 198

               
               
               Conread position:4-216
               
               
               Cow position:chr22:3282824-3282618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:4-216
               
               
               Cow position:chr22:11130872-11131079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):10, 122

               
               
               Conread position:4-217
               
               
               Cow position:chr22:8733340-8733130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:4-217
               
               
               Cow position:chr22:11813719-11813508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:4-218
               
               
               Cow position:chr22:6754269-6754048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 198

               
               
               Conread position:4-218
               
               
               Cow position:chr22:46665492-46665280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 75

               
               
               Conread position:4-219
               
               
               Cow position:chr22:4075889-4075667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:4-219
               
               
               Cow position:chr22:27577741-27577959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):27, 196

               
               
               Conread position:4-220
               
               
               Cow position:chr22:1309732-1309520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 121

               
               
               Conread position:4-223
               
               
               Cow position:chr22:6622249-6622032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:4-223
               
               
               Cow position:chr22:15915043-15914824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:4-223
               
               
               Cow position:chr22:40387156-40387374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-224
               
               
               Cow position:chr22:7164966-7165191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 172

               
               
               Conread position:4-225
               
               
               Cow position:chr22:12188483-12188254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 202

               
               
               Conread position:4-225
               
               
               Cow position:chr22:12195570-12195340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 203

               
               
               Conread position:4-230
               
               
               Cow position:chr22:8883013-8883239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):23, 111

               
               
               Conread position:5-223
               
               
               Cow position:chr22:21567996-21568215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:6-185
               
               
               Cow position:chr22:20166857-20166677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 81

               
               
               Conread position:6-201
               
               
               Cow position:chr22:14600329-14600134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:6-204
               
               
               Cow position:chr22:14372177-14372368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:6-204
               
               
               Cow position:chr22:18933712-18933511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):7, 180

               
               
               Conread position:6-207
               
               
               Cow position:chr22:31870251-31870051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):59, 100

               
               
               Conread position:6-213
               
               
               Cow position:chr22:25254176-25254386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:6-214
               
               
               Cow position:chr22:12673331-12673121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):7, 194

               
               
               Conread position:6-216
               
               
               Cow position:chr22:16866035-16866252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):7, 191

               
               
               Conread position:6-217
               
               
               Cow position:chr22:23675961-23675756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):61, 26

               
               
               Conread position:6-221
               
               
               Cow position:chr22:42648716-42648936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):7, 97

               
               
               Conread position:6-223
               
               
               Cow position:chr22:35578773-35578553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):7, 86

               
               
               Conread position:7-208
               
               
               Cow position:chr22:21746648-21746843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:8-165
               
               
               Cow position:chr22:47525755-47525912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:8-199
               
               
               Cow position:chr22:7361973-7361777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):7, 142

               
               
               Conread position:8-199
               
               
               Cow position:chr22:40869837-40870029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 95

               
               
               Conread position:8-204
               
               
               Cow position:chr22:39446297-39446497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:8-205
               
               
               Cow position:chr22:9279031-9279225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 133

               
               
               Conread position:8-218
               
               
               Cow position:chr22:7140648-7140860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):7, 192

               
               
               Conread position:8-227
               
               
               Cow position:chr22:22860907-22860684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):23, 121

               
               
               Conread position:10-218
               
               
               Cow position:chr22:29219896-29219686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):10, 194

               
               
               Conread position:10-220
               
               
               Cow position:chr22:530565-530359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):57, 25

               
               
               Conread position:10-222
               
               
               Cow position:chr22:5375398-5375612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:10-223
               
               
               Cow position:chr22:30713048-30713270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 216

               
               
               Conread position:10-225
               
               
               Cow position:chr22:13286459-13286670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:11-203
               
               
               Cow position:chr22:37201862-37202051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):56, 6

               
               
               Conread position:11-214
               
               
               Cow position:chr22:12902842-12902645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:11-219
               
               
               Cow position:chr22:24134318-24134108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):14, 190

               
               
               Conread position:11-225
               
               
               Cow position:chr22:35533227-35533002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):15, 184

               
               
               Conread position:12-180
               
               
               Cow position:chr22:45513513-45513345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):55, 23

               
               
               Conread position:13-204
               
               
               Cow position:chr22:37145334-37145523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 13

               
               
               Conread position:13-212
               
               
               Cow position:chr22:4718120-4718315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):18, 7

               
               
               Conread position:14-182
               
               
               Cow position:chr22:1728246-1728413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:14-205
               
               
               Cow position:chr22:10763798-10763982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 11

               
               
               Conread position:16-175
               
               
               Cow position:chr22:15025093-15024935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:16-186
               
               
               Cow position:chr22:6202964-6203136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:16-204
               
               
               Cow position:chr22:23601474-23601285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):50, 99

               
               
               Conread position:16-216
               
               
               Cow position:chr22:16346413-16346608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-220
               
               
               Cow position:chr22:28340200-28340406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):50, 79

               
               
               Conread position:18-219
               
               
               Cow position:chr22:12854086-12853889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:18-226
               
               
               Cow position:chr22:39508022-39507815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 69

               
               
               Conread position:19-185
               
               
               Cow position:chr22:16724668-16724504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):44, 96

               
               
               Conread position:19-186
               
               
               Cow position:chr22:46610761-46610592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):46, 57

               
               
               Conread position:19-192
               
               
               Cow position:chr22:12892347-12892170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):48, 111

               
               
               Conread position:19-204
               
               
               Cow position:chr22:2632865-2633051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 127

               
               
               Conread position:19-204
               
               
               Cow position:chr22:6106357-6106168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr22:12315830-12316009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):48, 39

               
               
               Conread position:19-204
               
               
               Cow position:chr22:23265633-23265446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr22:27828397-27828579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-209
               
               
               Cow position:chr22:2876779-2876589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 82

               
               
               Conread position:19-211
               
               
               Cow position:chr22:43965719-43965911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-212
               
               
               Cow position:chr22:27275481-27275676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-213
               
               
               Cow position:chr22:14602153-14601965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 101

               
               
               Conread position:19-214
               
               
               Cow position:chr22:12313444-12313633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):44, 104

               
               
               Conread position:19-216
               
               
               Cow position:chr22:18099638-18099834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:19-216
               
               
               Cow position:chr22:43572962-43573162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:19-218
               
               
               Cow position:chr22:30615749-30615947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):45, 144

               
               
               Conread position:19-219
               
               
               Cow position:chr22:5290869-5291071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 171

               
               
               Conread position:19-219
               
               
               Cow position:chr22:12637619-12637819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:19-219
               
               
               Cow position:chr22:23372845-23372641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 81

               
               
               Conread position:19-222
               
               
               Cow position:chr22:9372540-9372746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):46, 194

               
               
               Conread position:19-222
               
               
               Cow position:chr22:34894986-34895174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:19-222
               
               
               Cow position:chr22:47555867-47556076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-223
               
               
               Cow position:chr22:4157063-4156855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):48, 71

               
               
               Conread position:19-223
               
               
               Cow position:chr22:25811930-25811712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):46, 197

               
               
               Conread position:19-223
               
               
               Cow position:chr22:33448062-33447858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 179

               
               
               Conread position:19-224
               
               
               Cow position:chr22:33373258-33373467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:19-226
               
               
               Cow position:chr22:14641838-14641631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-227
               
               
               Cow position:chr22:1046173-1045961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-228
               
               
               Cow position:chr22:965156-964947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 163

               
               
               Conread position:19-229
               
               
               Cow position:chr22:25312528-25312743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):47, 182

               
               
               Conread position:19-232
               
               
               Cow position:chr22:16044397-16044167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-233
               
               
               Cow position:chr22:7497091-7496873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:19-233
               
               
               Cow position:chr22:10468530-10468741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 102

               
               
               Conread position:20-216
               
               
               Cow position:chr22:18442728-18442532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:20-220
               
               
               Cow position:chr22:36539632-36539441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):36, 96

               
               
               Conread position:24-186
               
               
               Cow position:chr22:24282941-24282777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-199
               
               
               Cow position:chr22:27591218-27591398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:24-204
               
               
               Cow position:chr22:6485986-6486167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:24-216
               
               
               Cow position:chr22:1106091-1106285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:24-223
               
               
               Cow position:chr22:21414022-21414216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-226
               
               
               Cow position:chr22:17687163-17687368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:25-174
               
               
               Cow position:chr22:7512640-7512792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):42, 57

               
               
               Conread position:25-174
               
               
               Cow position:chr22:17119837-17119987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:25-185
               
               
               Cow position:chr22:1819511-1819347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr22:10609383-10609541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr22:1588319-1588486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-192
               
               
               Cow position:chr22:1830073-1830234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:25-192
               
               
               Cow position:chr22:17198163-17198329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 143

               
               
               Conread position:25-199
               
               
               Cow position:chr22:39493811-39493635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-200
               
               
               Cow position:chr22:10913689-10913857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 100

               
               
               Conread position:25-201
               
               
               Cow position:chr22:4560788-4560610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-201
               
               
               Cow position:chr22:11497519-11497694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:25-201
               
               
               Cow position:chr22:15737259-15737430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:25-202
               
               
               Cow position:chr22:44717746-44717923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:25-203
               
               
               Cow position:chr22:16541627-16541448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-203
               
               
               Cow position:chr22:36209278-36209457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:25-204
               
               
               Cow position:chr22:2704323-2704502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-204
               
               
               Cow position:chr22:18926381-18926559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):42, 149

               
               
               Conread position:25-204
               
               
               Cow position:chr22:24802675-24802487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr22:25809251-25809078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:25-204
               
               
               Cow position:chr22:39215590-39215409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:25-207
               
               
               Cow position:chr22:3470313-3470493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:25-211
               
               
               Cow position:chr22:11039480-11039670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-211
               
               
               Cow position:chr22:28937907-28937732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:25-212
               
               
               Cow position:chr22:2105604-2105791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-212
               
               
               Cow position:chr22:30687051-30687231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:25-213
               
               
               Cow position:chr22:3541093-3540910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-213
               
               
               Cow position:chr22:27274675-27274479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):42, 178

               
               
               Conread position:25-213
               
               
               Cow position:chr22:45788635-45788819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):139, 49

               
               
               Conread position:25-214
               
               
               Cow position:chr22:17359500-17359685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr22:33030823-33031018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 178

               
               
               Conread position:25-214
               
               
               Cow position:chr22:35215573-35215765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr22:11601060-11601249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:25-216
               
               
               Cow position:chr22:33522855-33522662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-217
               
               
               Cow position:chr22:15490679-15490869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-217
               
               
               Cow position:chr22:43704840-43704652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-218
               
               
               Cow position:chr22:23630326-23630139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:25-218
               
               
               Cow position:chr22:26267872-26268065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:25-219
               
               
               Cow position:chr22:1959261-1959455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:25-220
               
               
               Cow position:chr22:14487960-14488157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):29, 21

               
               
               Conread position:25-220
               
               
               Cow position:chr22:35902397-35902202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):26, 106

               
               
               Conread position:25-220
               
               
               Cow position:chr22:41025781-41025976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:25-223
               
               
               Cow position:chr22:16533099-16533289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:25-223
               
               
               Cow position:chr22:25764469-25764270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:25-224
               
               
               Cow position:chr22:12678397-12678199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-225
               
               
               Cow position:chr22:2409107-2408904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:25-226
               
               
               Cow position:chr22:12929255-12929054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:25-226
               
               
               Cow position:chr22:25246937-25247131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:25-229
               
               
               Cow position:chr22:3937085-3937287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:25-233
               
               
               Cow position:chr22:16916905-16916701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:27-238
               
               
               Cow position:chr22:34618826-34619046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:28-185
               
               
               Cow position:chr22:2643956-2644117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-189
               
               
               Cow position:chr22:28146704-28146870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr22:31209615-31209789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-201
               
               
               Cow position:chr22:9735297-9735468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-203
               
               
               Cow position:chr22:24890249-24890422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:28-204
               
               
               Cow position:chr22:6176258-6176079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr22:14545897-14545719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr22:15024736-15024913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr22:18403273-18403449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:28-204
               
               
               Cow position:chr22:35627376-35627554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:28-204
               
               
               Cow position:chr22:38313449-38313271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr22:39472336-39472158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr22:43131530-43131351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr22:43238866-43238691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:28-206
               
               
               Cow position:chr22:1074292-1074471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 170

               
               
               Conread position:28-208
               
               
               Cow position:chr22:16813826-16813999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 22

               
               
               Conread position:28-213
               
               
               Cow position:chr22:9325865-9326053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:28-214
               
               
               Cow position:chr22:1484891-1485080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr22:2095581-2095769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr22:16339883-16340067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:28-215
               
               
               Cow position:chr22:23689176-23688990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:28-216
               
               
               Cow position:chr22:28568826-28569017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr22:1551929-1552111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:28-217
               
               
               Cow position:chr22:21328270-21328463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:28-217
               
               
               Cow position:chr22:40374637-40374820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-218
               
               
               Cow position:chr22:39472130-39471937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr22:10350988-10351185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr22:15154029-15154224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):41, 73

               
               
               Conread position:28-220
               
               
               Cow position:chr22:45684011-45683811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 126

               
               
               Conread position:28-221
               
               
               Cow position:chr22:4108702-4108507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:28-222
               
               
               Cow position:chr22:41341923-41341726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr22:1710557-1710753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:28-223
               
               
               Cow position:chr22:14091195-14090998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-223
               
               
               Cow position:chr22:17652463-17652653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:28-224
               
               
               Cow position:chr22:9668604-9668804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr22:32514321-32514513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 157

               
               
               Conread position:28-224
               
               
               Cow position:chr22:37066774-37066582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):174, 37

               
               
               Conread position:28-225
               
               
               Cow position:chr22:29949905-29950102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 181

               
               
               Conread position:28-225
               
               
               Cow position:chr22:36762066-36762257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:28-228
               
               
               Cow position:chr22:1991627-1991832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:29-182
               
               
               Cow position:chr22:4632296-4632448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 67

               
               
               Conread position:29-183
               
               
               Cow position:chr22:30640952-30641106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 137

               
               
               Conread position:29-183
               
               
               Cow position:chr22:30643105-30642951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:29-201
               
               
               Cow position:chr22:33399460-33399289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:29-204
               
               
               Cow position:chr22:16564177-16564348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:29-213
               
               
               Cow position:chr22:27401766-27401941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 90

               
               
               Conread position:29-214
               
               
               Cow position:chr22:1865808-1865995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-214
               
               
               Cow position:chr22:8429916-8430103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-216
               
               
               Cow position:chr22:16872838-16872648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 98

               
               
               Conread position:29-218
               
               
               Cow position:chr22:23806512-23806321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-223
               
               
               Cow position:chr22:9075437-9075628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):35, 11

               
               
               Conread position:29-223
               
               
               Cow position:chr22:43131115-43130917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-224
               
               
               Cow position:chr22:2123321-2123516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:30-195
               
               
               Cow position:chr22:14676715-14676882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:30-222
               
               
               Cow position:chr22:27681751-27681944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):35, 168

               
               
               Conread position:30-233
               
               
               Cow position:chr22:45771994-45771795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 86

               
               
               Conread position:32-201
               
               
               Cow position:chr22:43730317-43730482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):34, 80

               
               
               Conread position:32-219
               
               
               Cow position:chr22:30074739-30074555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:33-183
               
               
               Cow position:chr22:44649385-44649233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-204
               
               
               Cow position:chr22:6686689-6686519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 138

               
               
               Conread position:35-186
               
               
               Cow position:chr22:16639339-16639493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr22:22022936-22023107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-212
               
               
               Cow position:chr22:30750075-30749894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:35-217
               
               
               Cow position:chr22:11790018-11790199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:35-219
               
               
               Cow position:chr22:6149356-6149172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 170

               
               
               Conread position:35-220
               
               
               Cow position:chr22:6128142-6127962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:35-223
               
               
               Cow position:chr22:47820473-47820658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):30, 65

               
               
               Conread position:35-226
               
               
               Cow position:chr22:30606891-30607086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-198
               
               
               Cow position:chr22:47562741-47562908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:36-200
               
               
               Cow position:chr22:23735979-23735813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:36-204
               
               
               Cow position:chr22:2470204-2470035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr22:12681764-12681592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 93

               
               
               Conread position:36-204
               
               
               Cow position:chr22:13058752-13058582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr22:25690239-25690077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:36-207
               
               
               Cow position:chr22:4164014-4164187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:36-212
               
               
               Cow position:chr22:11352416-11352236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:36-213
               
               
               Cow position:chr22:37702013-37702185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):6, 71

               
               
               Conread position:36-214
               
               
               Cow position:chr22:2438941-2438763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 86

               
               
               Conread position:36-220
               
               
               Cow position:chr22:20034865-20035037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):29, 42

               
               
               Conread position:36-221
               
               
               Cow position:chr22:8480139-8480328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:36-223
               
               
               Cow position:chr22:22433078-22433267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):30, 157

               
               
               Conread position:36-225
               
               
               Cow position:chr22:26112400-26112589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):6, 60

               
               
               Conread position:36-226
               
               
               Cow position:chr22:35403744-35403938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:37-219
               
               
               Cow position:chr22:11697158-11696977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):28, 131

               
               
               Conread position:38-214
               
               
               Cow position:chr22:45579039-45579217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:39-185
               
               
               Cow position:chr22:11269858-11269715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):110, 26

               
               
               Conread position:39-212
               
               
               Cow position:chr22:5595772-5595596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:39-220
               
               
               Cow position:chr22:30176756-30176940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-226
               
               
               Cow position:chr22:24055425-24055617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:40-204
               
               
               Cow position:chr22:7415014-7414845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 10

               
               
               Conread position:40-204
               
               
               Cow position:chr22:23980168-23980006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:40-214
               
               
               Cow position:chr22:4132615-4132790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 77

               
               
               Conread position:40-217
               
               
               Cow position:chr22:19305938-19306115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:40-220
               
               
               Cow position:chr22:30693497-30693314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:41-185
               
               
               Cow position:chr22:30583695-30583841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-186
               
               
               Cow position:chr22:13670126-13669982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 42

               
               
               Conread position:42-220
               
               
               Cow position:chr22:44050408-44050232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):23, 78

               
               
               Conread position:43-203
               
               
               Cow position:chr22:1983891-1984059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:43-204
               
               
               Cow position:chr22:12207663-12207505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):24, 82

               
               
               Conread position:49-209
               
               
               Cow position:chr22:4684721-4684877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:49-213
               
               
               Cow position:chr22:59659-59824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 149

               
               
               Conread position:50-182
               
               
               Cow position:chr22:18441131-18441265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-203
               
               
               Cow position:chr22:1973771-1973617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):16, 49

               
               
               Conread position:50-216
               
               
               Cow position:chr22:800021-800196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-217
               
               
               Cow position:chr22:671090-670919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):13, 165

               
               
               Conread position:50-222
               
               
               Cow position:chr22:7518605-7518773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:50-235
               
               
               Cow position:chr22:2133530-2133342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 90

               
               
               Conread position:52-214
               
               
               Cow position:chr22:29546691-29546846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:56-204
               
               
               Cow position:chr22:42745384-42745540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:56-212
               
               
               Cow position:chr22:672213-672055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):9, 143

               
               
               Conread position:62-165
               
               
               Cow position:chr22:9346986-9346883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr22:31790918-31790792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr22:32480407-32480276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr22:29642173-29642315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr22:16135831-16135974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):75, 28

               
               
               Conread position:62-207
               
               
               Cow position:chr22:31409301-31409446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-208
               
               
               Cow position:chr22:44642313-44642453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr22:9983764-9983616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr22:27084337-27084186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):126, 31

               
               
               Conread position:62-214
               
               
               Cow position:chr22:3061013-3061164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr22:4162520-4162372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr22:16840733-16840582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr22:30293752-30293903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr22:16235441-16235287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):44, 135

               
               
               Conread position:62-217
               
               
               Cow position:chr22:16275089-16274936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr22:27765267-27765422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr22:11173290-11173130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):72, 105

               
               
               Conread position:62-219
               
               
               Cow position:chr22:28690441-28690593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr22:18193527-18193685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:62-223
               
               
               Cow position:chr22:24557462-24557298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):148, 5

               
               
               Conread position:62-224
               
               
               Cow position:chr22:16529967-16529811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):140, 19

               
               
               Conread position:62-224
               
               
               Cow position:chr22:30502594-30502752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr22:4083996-4083830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:62-235
               
               
               Cow position:chr22:36574541-36574372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:62-238
               
               
               Cow position:chr22:37543650-37543475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:63-184
               
               
               Cow position:chr22:8331063-8331183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:63-199
               
               
               Cow position:chr22:21499781-21499646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:63-215
               
               
               Cow position:chr22:17120515-17120666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:63-215
               
               
               Cow position:chr22:24903657-24903802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:63-219
               
               
               Cow position:chr22:3960237-3960084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:63-220
               
               
               Cow position:chr22:3987583-3987739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:63-220
               
               
               Cow position:chr22:10594673-10594829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:63-231
               
               
               Cow position:chr22:44018191-44018023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 148

               
               
               Conread position:64-199
               
               
               Cow position:chr22:32512542-32512409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:64-228
               
               
               Cow position:chr22:4533806-4533642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):150, 132

               
               
               Conread position:65-208
               
               
               Cow position:chr22:28634513-28634374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:65-219
               
               
               Cow position:chr22:5644360-5644210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:68-188
               
               
               Cow position:chr22:977030-976910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 78

               
               
               Conread position:72-207
               
               
               Cow position:chr22:6204351-6204217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:72-215
               
               
               Cow position:chr22:13680191-13680047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:75-221
               
               
               Cow position:chr22:14143044-14142906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:77-223
               
               
               Cow position:chr22:2135638-2135781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:80-204
               
               
               Cow position:chr22:31599513-31599637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):113, 46

               
               
               Conread position:80-216
               
               
               Cow position:chr22:15050434-15050569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:80-216
               
               
               Cow position:chr22:22144225-22144086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:81-223
               
               
               Cow position:chr22:29345672-29345808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 40

               
               
               Conread position:82-223
               
               
               Cow position:chr22:28290424-28290563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:84-218
               
               
               Cow position:chr22:10371729-10371854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:85-204
               
               
               Cow position:chr22:35665788-35665669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-208
               
               
               Cow position:chr22:28728365-28728243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:85-223
               
               
               Cow position:chr22:5837345-5837485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:88-214
               
               
               Cow position:chr22:854447-854574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:88-217
               
               
               Cow position:chr22:23386622-23386493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-224
               
               
               Cow position:chr22:17107642-17107775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:91-225
               
               
               Cow position:chr22:20945479-20945613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:93-224
               
               
               Cow position:chr22:18301948-18301818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):109, 20

               
               
               Conread position:96-216
               
               
               Cow position:chr22:1953251-1953370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:98-207
               
               
               Cow position:chr22:21415713-21415822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:86
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:99-223
               
               
               Cow position:chr22:41044811-41044688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 70

               
               
               Conread position:102-237
               
               
               Cow position:chr22:28732352-28732486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:109-229
               
               
               Cow position:chr22:1645626-1645506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):53, 93

               
               
               Conread position:1-186
               
               
               Cow position:chr23:11129238-11129427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):12, 93

               
               
               Conread position:1-223
               
               
               Cow position:chr23:3204783-3205009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 195

               
               
               Conread position:1-223
               
               
               Cow position:chr23:12405815-12405593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:1-223
               
               
               Cow position:chr23:40348640-40348421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):20, 12

               
               
               Conread position:2-192
               
               
               Cow position:chr23:30170779-30170596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:2-217
               
               
               Cow position:chr23:13520456-13520666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:3-185
               
               
               Cow position:chr23:18416048-18415867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:3-186
               
               
               Cow position:chr23:5437000-5436810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr23:16582907-16582716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-207
               
               
               Cow position:chr23:32173859-32173647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-212
               
               
               Cow position:chr23:11224858-11225069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:3-213
               
               
               Cow position:chr23:9874658-9874877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:3-217
               
               
               Cow position:chr23:19179369-19179147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):10, 168

               
               
               Conread position:3-219
               
               
               Cow position:chr23:32621286-32621512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:175
               
               
               Alignm E-value:8.96831e-44
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr23:16447680-16447467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:3-227
               
               
               Cow position:chr23:40778268-40778489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):20, 92

               
               
               Conread position:4-161
               
               
               Cow position:chr23:20563706-20563863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-167
               
               
               Cow position:chr23:1701175-1701346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr23:4972770-4972953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):21, 169

               
               
               Conread position:4-191
               
               
               Cow position:chr23:21423771-21423962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:4-199
               
               
               Cow position:chr23:4726798-4726996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):18, 80

               
               
               Conread position:4-200
               
               
               Cow position:chr23:25363581-25363779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:4-204
               
               
               Cow position:chr23:25556887-25557087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:4-204
               
               
               Cow position:chr23:35512254-35512048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):59, 25

               
               
               Conread position:4-206
               
               
               Cow position:chr23:35656415-35656620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:4-210
               
               
               Cow position:chr23:306526-306740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-211
               
               
               Cow position:chr23:32546261-32546049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):16, 34

               
               
               Conread position:4-213
               
               
               Cow position:chr23:3234778-3234560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-214
               
               
               Cow position:chr23:1798114-1798338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-215
               
               
               Cow position:chr23:1725357-1725561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-218
               
               
               Cow position:chr23:12590406-12590624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:4-223
               
               
               Cow position:chr23:19173354-19173128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:4-224
               
               
               Cow position:chr23:307459-307688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:5-185
               
               
               Cow position:chr23:769532-769351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:5-215
               
               
               Cow position:chr23:809510-809725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):17, 128

               
               
               Conread position:5-217
               
               
               Cow position:chr23:18739460-18739240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:171
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):18, 205

               
               
               Conread position:5-234
               
               
               Cow position:chr23:40738008-40737776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:6-216
               
               
               Cow position:chr23:32322862-32322649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):8, 79

               
               
               Conread position:6-223
               
               
               Cow position:chr23:5436633-5436412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:7-208
               
               
               Cow position:chr23:5314536-5314741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:7-217
               
               
               Cow position:chr23:4416275-4416063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:7-218
               
               
               Cow position:chr23:20397457-20397247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):19, 36

               
               
               Conread position:8-212
               
               
               Cow position:chr23:3890561-3890356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):6, 12

               
               
               Conread position:8-216
               
               
               Cow position:chr23:33711770-33711982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):7, 88

               
               
               Conread position:8-220
               
               
               Cow position:chr23:38267388-38267181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:8-221
               
               
               Cow position:chr23:4003654-4003877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:10-212
               
               
               Cow position:chr23:7471567-7471758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 51

               
               
               Conread position:10-219
               
               
               Cow position:chr23:39813513-39813725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):31, 19

               
               
               Conread position:14-199
               
               
               Cow position:chr23:28529934-28529747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:14-223
               
               
               Cow position:chr23:2395577-2395374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):49, 11

               
               
               Conread position:16-212
               
               
               Cow position:chr23:10888297-10888482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-221
               
               
               Cow position:chr23:16246760-16246963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-224
               
               
               Cow position:chr23:25883984-25884191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 101

               
               
               Conread position:18-167
               
               
               Cow position:chr23:38994257-38994409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:18-218
               
               
               Cow position:chr23:17462613-17462815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-199
               
               
               Cow position:chr23:17012714-17012538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 33

               
               
               Conread position:19-199
               
               
               Cow position:chr23:35929975-35930151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:19-201
               
               
               Cow position:chr23:11081281-11081464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:19-201
               
               
               Cow position:chr23:13137911-13137733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):44, 107

               
               
               Conread position:19-204
               
               
               Cow position:chr23:20596570-20596380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 103

               
               
               Conread position:19-206
               
               
               Cow position:chr23:40542240-40542059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:19-207
               
               
               Cow position:chr23:3244889-3244703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):85, 39

               
               
               Conread position:19-207
               
               
               Cow position:chr23:39267809-39267996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):44, 95

               
               
               Conread position:19-212
               
               
               Cow position:chr23:1337279-1337089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):181, 46

               
               
               Conread position:19-215
               
               
               Cow position:chr23:41348599-41348407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:19-216
               
               
               Cow position:chr23:10416396-10416207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-217
               
               
               Cow position:chr23:39254720-39254522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):48, 179

               
               
               Conread position:19-218
               
               
               Cow position:chr23:24963025-24963226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 31

               
               
               Conread position:19-219
               
               
               Cow position:chr23:28574732-28574930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:20-222
               
               
               Cow position:chr23:17792399-17792199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):43, 82

               
               
               Conread position:23-204
               
               
               Cow position:chr23:20725658-20725482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:24-185
               
               
               Cow position:chr23:24779513-24779350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:24-186
               
               
               Cow position:chr23:2285858-2286015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):33, 92

               
               
               Conread position:24-199
               
               
               Cow position:chr23:25087373-25087201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:24-236
               
               
               Cow position:chr23:39125397-39125180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:25-183
               
               
               Cow position:chr23:13410725-13410572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):40, 51

               
               
               Conread position:25-195
               
               
               Cow position:chr23:32126335-32126505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:25-199
               
               
               Cow position:chr23:38058-38234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-199
               
               
               Cow position:chr23:10815924-10815753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:25-203
               
               
               Cow position:chr23:15743122-15743299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 14

               
               
               Conread position:25-204
               
               
               Cow position:chr23:19182476-19182295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr23:25864669-25864485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 73

               
               
               Conread position:25-208
               
               
               Cow position:chr23:26949227-26949404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:25-212
               
               
               Cow position:chr23:22530408-22530223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 113

               
               
               Conread position:25-214
               
               
               Cow position:chr23:187209-187398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:25-214
               
               
               Cow position:chr23:8837659-8837470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:25-215
               
               
               Cow position:chr23:29330338-29330527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:25-215
               
               
               Cow position:chr23:36200435-36200618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:25-216
               
               
               Cow position:chr23:30867268-30867083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-218
               
               
               Cow position:chr23:4291385-4291580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-218
               
               
               Cow position:chr23:11369259-11369440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 10

               
               
               Conread position:25-218
               
               
               Cow position:chr23:20557814-20557620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:25-218
               
               
               Cow position:chr23:33434691-33434885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 153

               
               
               Conread position:25-219
               
               
               Cow position:chr23:26794882-26794689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):91, 33

               
               
               Conread position:25-222
               
               
               Cow position:chr23:27414061-27413866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:25-224
               
               
               Cow position:chr23:57133-56926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-224
               
               
               Cow position:chr23:3979732-3979547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:25-228
               
               
               Cow position:chr23:5642330-5642128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):163, 110

               
               
               Conread position:25-229
               
               
               Cow position:chr23:2471033-2471237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:25-232
               
               
               Cow position:chr23:18823020-18823217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:27-204
               
               
               Cow position:chr23:26975430-26975258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:27-211
               
               
               Cow position:chr23:2110815-2110994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:27-215
               
               
               Cow position:chr23:35527111-35527301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):7, 152

               
               
               Conread position:28-185
               
               
               Cow position:chr23:14350859-14351015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-193
               
               
               Cow position:chr23:15288347-15288514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-198
               
               
               Cow position:chr23:9726508-9726336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr23:1480673-1480846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr23:9387994-9387826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr23:5870159-5869985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr23:26741457-26741285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:28-204
               
               
               Cow position:chr23:14140640-14140822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr23:18611731-18611554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:28-204
               
               
               Cow position:chr23:34356676-34356851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):174, 96

               
               
               Conread position:28-204
               
               
               Cow position:chr23:39333488-39333310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-207
               
               
               Cow position:chr23:1759280-1759459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:28-207
               
               
               Cow position:chr23:13553668-13553491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:28-212
               
               
               Cow position:chr23:5617607-5617789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:28-213
               
               
               Cow position:chr23:534261-534442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-213
               
               
               Cow position:chr23:24718768-24718587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:28-213
               
               
               Cow position:chr23:26127028-26126837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr23:26848866-26848676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr23:36458123-36457935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:28-217
               
               
               Cow position:chr23:9226315-9226494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 54

               
               
               Conread position:28-218
               
               
               Cow position:chr23:7155659-7155481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):82, 27

               
               
               Conread position:28-219
               
               
               Cow position:chr23:10829548-10829353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr23:18384753-18384942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:28-219
               
               
               Cow position:chr23:30617445-30617253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:28-220
               
               
               Cow position:chr23:26604285-26604483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr23:29607110-29607300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):169, 35

               
               
               Conread position:28-220
               
               
               Cow position:chr23:39056790-39056984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 51

               
               
               Conread position:28-220
               
               
               Cow position:chr23:39381451-39381645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 30

               
               
               Conread position:28-220
               
               
               Cow position:chr23:39864686-39864885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):36, 30

               
               
               Conread position:28-222
               
               
               Cow position:chr23:35239385-35239576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:28-223
               
               
               Cow position:chr23:10206294-10206096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 105

               
               
               Conread position:28-223
               
               
               Cow position:chr23:10377322-10377123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr23:24966429-24966232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:28-223
               
               
               Cow position:chr23:26986237-26986045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:28-223
               
               
               Cow position:chr23:30585617-30585419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:28-223
               
               
               Cow position:chr23:31601417-31601222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-223
               
               
               Cow position:chr23:33232668-33232474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:28-224
               
               
               Cow position:chr23:3293729-3293917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:28-224
               
               
               Cow position:chr23:25676589-25676387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr23:27859822-27860019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:28-232
               
               
               Cow position:chr23:1655928-1656133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:28-233
               
               
               Cow position:chr23:37456003-37455797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-240
               
               
               Cow position:chr23:37041555-37041343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:29-153
               
               
               Cow position:chr23:38117992-38118118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-208
               
               
               Cow position:chr23:40502480-40502296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-214
               
               
               Cow position:chr23:16690033-16689846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-214
               
               
               Cow position:chr23:18222022-18221835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-218
               
               
               Cow position:chr23:4338312-4338127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:29-220
               
               
               Cow position:chr23:4282180-4281989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):36, 11

               
               
               Conread position:29-222
               
               
               Cow position:chr23:21664338-21664530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):12, 87

               
               
               Conread position:32-204
               
               
               Cow position:chr23:164797-164962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:32-218
               
               
               Cow position:chr23:30357261-30357075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):33, 123

               
               
               Conread position:33-224
               
               
               Cow position:chr23:13836758-13836950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):32, 166

               
               
               Conread position:35-186
               
               
               Cow position:chr23:10844596-10844750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr23:12138050-12138217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:35-204
               
               
               Cow position:chr23:21628201-21628373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:35-211
               
               
               Cow position:chr23:5605299-5605479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:35-211
               
               
               Cow position:chr23:5612559-5612739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:35-219
               
               
               Cow position:chr23:15655617-15655432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:35-223
               
               
               Cow position:chr23:4343522-4343712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-192
               
               
               Cow position:chr23:35718353-35718510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 56

               
               
               Conread position:36-204
               
               
               Cow position:chr23:29972429-29972607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 171

               
               
               Conread position:36-214
               
               
               Cow position:chr23:10675893-10676074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr23:24930030-24929850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:36-215
               
               
               Cow position:chr23:19739524-19739343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:36-216
               
               
               Cow position:chr23:4803000-4803186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 79

               
               
               Conread position:36-219
               
               
               Cow position:chr23:18387549-18387360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr23:28580545-28580355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr23:32479976-32479793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):30, 80

               
               
               Conread position:36-223
               
               
               Cow position:chr23:16780520-16780327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):31, 125

               
               
               Conread position:36-223
               
               
               Cow position:chr23:30962842-30963030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 176

               
               
               Conread position:37-201
               
               
               Cow position:chr23:16664360-16664199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):8, 88

               
               
               Conread position:37-204
               
               
               Cow position:chr23:12040201-12040370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-215
               
               
               Cow position:chr23:6672593-6672410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 163

               
               
               Conread position:37-220
               
               
               Cow position:chr23:27526627-27526809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):28, 51

               
               
               Conread position:37-222
               
               
               Cow position:chr23:8698462-8698651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):5, 161

               
               
               Conread position:39-185
               
               
               Cow position:chr23:24701040-24700886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-188
               
               
               Cow position:chr23:13692844-13692995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-199
               
               
               Cow position:chr23:4521840-4521677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-215
               
               
               Cow position:chr23:14394710-14394888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:39-223
               
               
               Cow position:chr23:19269089-19269275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:40-204
               
               
               Cow position:chr23:40965936-40965771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 156

               
               
               Conread position:40-208
               
               
               Cow position:chr23:3983145-3982979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:40-223
               
               
               Cow position:chr23:9754168-9753982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):11, 6

               
               
               Conread position:40-223
               
               
               Cow position:chr23:20272086-20271906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 65

               
               
               Conread position:40-224
               
               
               Cow position:chr23:40672933-40672744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-229
               
               
               Cow position:chr23:41107975-41107787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 71

               
               
               Conread position:41-214
               
               
               Cow position:chr23:18802223-18802046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-220
               
               
               Cow position:chr23:18489702-18489877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:41-225
               
               
               Cow position:chr23:12363571-12363394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:43-204
               
               
               Cow position:chr23:16647371-16647533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 153

               
               
               Conread position:43-215
               
               
               Cow position:chr23:799620-799445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:47-203
               
               
               Cow position:chr23:2187012-2186853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-164
               
               
               Cow position:chr23:36307658-36307544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:50-200
               
               
               Cow position:chr23:29786290-29786138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:52-213
               
               
               Cow position:chr23:19295155-19295326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):13, 155

               
               
               Conread position:61-214
               
               
               Cow position:chr23:27307814-27307968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:62-186
               
               
               Cow position:chr23:3270368-3270490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:62-200
               
               
               Cow position:chr23:38738383-38738520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr23:9760899-9761047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):63, 137

               
               
               Conread position:62-214
               
               
               Cow position:chr23:31262968-31263118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr23:40487897-40487744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr23:9876929-9876776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:62-218
               
               
               Cow position:chr23:21539224-21539375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr23:7856829-7856987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr23:28873080-28872927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):150, 56

               
               
               Conread position:62-221
               
               
               Cow position:chr23:4465897-4465737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:62-224
               
               
               Cow position:chr23:40494388-40494560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):52, 159

               
               
               Conread position:63-219
               
               
               Cow position:chr23:2563733-2563888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:63-228
               
               
               Cow position:chr23:4090485-4090652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 134

               
               
               Conread position:64-231
               
               
               Cow position:chr23:37948758-37948926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):45, 71

               
               
               Conread position:66-207
               
               
               Cow position:chr23:1647913-1648051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:66-216
               
               
               Cow position:chr23:9942583-9942434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:70-171
               
               
               Cow position:chr23:18978862-18978761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-219
               
               
               Cow position:chr23:9238027-9237884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 71

               
               
               Conread position:79-197
               
               
               Cow position:chr23:19822382-19822264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-230
               
               
               Cow position:chr23:1739542-1739693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:84-218
               
               
               Cow position:chr23:15099837-15099704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 103

               
               
               Conread position:85-204
               
               
               Cow position:chr23:37436229-37436348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:87-201
               
               
               Cow position:chr23:39302786-39302900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:91-221
               
               
               Cow position:chr23:34875660-34875795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):96, 18

               
               
               Conread position:92-220
               
               
               Cow position:chr23:17479298-17479426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:93-214
               
               
               Cow position:chr23:16613508-16613385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:98-222
               
               
               Cow position:chr23:12031512-12031632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):122, 95

               
               
               Conread position:101-220
               
               
               Cow position:chr23:580496-580380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:102-218
               
               
               Cow position:chr23:1429728-1429611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:107-214
               
               
               Cow position:chr23:31299355-31299463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1-199
               
               
               Cow position:chr24:2992901-2992703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):19, 29

               
               
               Conread position:1-199
               
               
               Cow position:chr24:3493862-3494058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-205
               
               
               Cow position:chr24:19623834-19624049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:1-207
               
               
               Cow position:chr24:40055531-40055327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):64, 52

               
               
               Conread position:1-215
               
               
               Cow position:chr24:19535278-19535059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-216
               
               
               Cow position:chr24:13888678-13888899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1-218
               
               
               Cow position:chr24:34272783-34273017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-218
               
               
               Cow position:chr24:39523471-39523254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-224
               
               
               Cow position:chr24:26001365-26001589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:2-224
               
               
               Cow position:chr24:26848752-26848540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:3-181
               
               
               Cow position:chr24:44041025-44040852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):10, 51

               
               
               Conread position:3-185
               
               
               Cow position:chr24:17294214-17294032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):64, 23

               
               
               Conread position:3-204
               
               
               Cow position:chr24:19000023-19000224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:3-212
               
               
               Cow position:chr24:19800823-19801028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:3-213
               
               
               Cow position:chr24:36036078-36035862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:3-214
               
               
               Cow position:chr24:390080-390291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 119

               
               
               Conread position:3-214
               
               
               Cow position:chr24:20222674-20222464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr24:352630-352407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):23, 53

               
               
               Conread position:3-223
               
               
               Cow position:chr24:21606697-21606475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr24:8676799-8677027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):22, 122

               
               
               Conread position:3-226
               
               
               Cow position:chr24:20225716-20225949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):21, 172

               
               
               Conread position:3-228
               
               
               Cow position:chr24:11028709-11028478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):22, 99

               
               
               Conread position:3-232
               
               
               Cow position:chr24:2359210-2358974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):23, 140

               
               
               Conread position:3-233
               
               
               Cow position:chr24:25194241-25194474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:4-184
               
               
               Cow position:chr24:5632444-5632254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-188
               
               
               Cow position:chr24:19637560-19637752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 125

               
               
               Conread position:4-201
               
               
               Cow position:chr24:11836427-11836223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):20, 200

               
               
               Conread position:4-201
               
               
               Cow position:chr24:27066213-27066409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:4-204
               
               
               Cow position:chr24:2261650-2261851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):61, 194

               
               
               Conread position:4-204
               
               
               Cow position:chr24:19186919-19187114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:4-204
               
               
               Cow position:chr24:30229450-30229655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:4-204
               
               
               Cow position:chr24:33238282-33238072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-205
               
               
               Cow position:chr24:24532156-24532354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-208
               
               
               Cow position:chr24:42984374-42984580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-211
               
               
               Cow position:chr24:41980682-41980473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 52

               
               
               Conread position:4-212
               
               
               Cow position:chr24:12200426-12200218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):59, 147

               
               
               Conread position:4-215
               
               
               Cow position:chr24:34302059-34301846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):19, 180

               
               
               Conread position:4-216
               
               
               Cow position:chr24:20801369-20801152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:4-218
               
               
               Cow position:chr24:35310706-35310923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:4-221
               
               
               Cow position:chr24:38006731-38006513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-223
               
               
               Cow position:chr24:21519406-21519633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:5-214
               
               
               Cow position:chr24:34896721-34896509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 113

               
               
               Conread position:6-177
               
               
               Cow position:chr24:18401337-18401162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:6-222
               
               
               Cow position:chr24:28721870-28722074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):9, 36

               
               
               Conread position:7-192
               
               
               Cow position:chr24:27553075-27553270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):19, 156

               
               
               Conread position:8-230
               
               
               Cow position:chr24:6102813-6103035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 143

               
               
               Conread position:10-186
               
               
               Cow position:chr24:17752129-17751944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 91

               
               
               Conread position:10-199
               
               
               Cow position:chr24:26880736-26880932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-204
               
               
               Cow position:chr24:10300066-10300259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):57, 9

               
               
               Conread position:10-207
               
               
               Cow position:chr24:31383103-31383293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:10-220
               
               
               Cow position:chr24:27300141-27300360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:11-222
               
               
               Cow position:chr24:27284805-27285025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:12-216
               
               
               Cow position:chr24:14551451-14551653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:12-216
               
               
               Cow position:chr24:43373049-43373254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):27, 13

               
               
               Conread position:12-222
               
               
               Cow position:chr24:19768855-19769071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 190

               
               
               Conread position:13-204
               
               
               Cow position:chr24:18695865-18696064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 12

               
               
               Conread position:15-192
               
               
               Cow position:chr24:28787849-28788028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):51, 10

               
               
               Conread position:16-183
               
               
               Cow position:chr24:7476357-7476189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:16-216
               
               
               Cow position:chr24:16994875-16995070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 106

               
               
               Conread position:18-204
               
               
               Cow position:chr24:11155669-11155481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:18-218
               
               
               Cow position:chr24:3148239-3148039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):47, 122

               
               
               Conread position:19-186
               
               
               Cow position:chr24:33944399-33944570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr24:22079461-22079632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:19-204
               
               
               Cow position:chr24:6740170-6739993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):162, 46

               
               
               Conread position:19-204
               
               
               Cow position:chr24:16645322-16645137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:19-212
               
               
               Cow position:chr24:42862622-42862816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):45, 17

               
               
               Conread position:19-214
               
               
               Cow position:chr24:6515434-6515238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 91

               
               
               Conread position:19-219
               
               
               Cow position:chr24:22647343-22647139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:19-220
               
               
               Cow position:chr24:39904006-39903812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:19-223
               
               
               Cow position:chr24:18750705-18750911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:159
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-223
               
               
               Cow position:chr24:36711192-36711396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:19-224
               
               
               Cow position:chr24:18405283-18405076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:19-238
               
               
               Cow position:chr24:44896036-44896256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 194

               
               
               Conread position:21-219
               
               
               Cow position:chr24:26588220-26588415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):45, 89

               
               
               Conread position:25-183
               
               
               Cow position:chr24:32230502-32230343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:25-184
               
               
               Cow position:chr24:6008166-6008008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:25-185
               
               
               Cow position:chr24:27270930-27271092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-186
               
               
               Cow position:chr24:32891040-32890884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-197
               
               
               Cow position:chr24:5490992-5490818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr24:34006205-34006029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:25-203
               
               
               Cow position:chr24:26113381-26113561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-203
               
               
               Cow position:chr24:36010424-36010607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:25-203
               
               
               Cow position:chr24:44987371-44987190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr24:162007-162188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr24:5152527-5152708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr24:14550798-14550972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:25-204
               
               
               Cow position:chr24:20588174-20588356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr24:29587004-29587182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 77

               
               
               Conread position:25-212
               
               
               Cow position:chr24:15557338-15557154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 117

               
               
               Conread position:25-214
               
               
               Cow position:chr24:20323498-20323305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr24:36554694-36554508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 95

               
               
               Conread position:25-215
               
               
               Cow position:chr24:25947858-25947667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-216
               
               
               Cow position:chr24:23046894-23046701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-217
               
               
               Cow position:chr24:19465913-19465713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:25-217
               
               
               Cow position:chr24:36303313-36303114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 142

               
               
               Conread position:25-218
               
               
               Cow position:chr24:32609651-32609844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:25-218
               
               
               Cow position:chr24:33098469-33098276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-219
               
               
               Cow position:chr24:4635164-4634967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr24:29648264-29648064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr24:39911029-39910833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:25-222
               
               
               Cow position:chr24:18268728-18268930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr24:885438-885247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 24

               
               
               Conread position:25-223
               
               
               Cow position:chr24:27906442-27906639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):24, 66

               
               
               Conread position:25-228
               
               
               Cow position:chr24:20017424-20017220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:25-228
               
               
               Cow position:chr24:34465502-34465288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 178

               
               
               Conread position:26-183
               
               
               Cow position:chr24:41916264-41916418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:28-183
               
               
               Cow position:chr24:31816585-31816736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:28-187
               
               
               Cow position:chr24:6742228-6742390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-196
               
               
               Cow position:chr24:35250105-35249935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 121

               
               
               Conread position:28-200
               
               
               Cow position:chr24:263289-263462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-204
               
               
               Cow position:chr24:9300634-9300812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:28-204
               
               
               Cow position:chr24:19730786-19730964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr24:21715344-21715168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 93

               
               
               Conread position:28-204
               
               
               Cow position:chr24:22194427-22194597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:28-204
               
               
               Cow position:chr24:27810164-27810332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:28-207
               
               
               Cow position:chr24:7914013-7914194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-209
               
               
               Cow position:chr24:17104563-17104385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-213
               
               
               Cow position:chr24:3542306-3542493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr24:39143619-39143805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):174, 37

               
               
               Conread position:28-217
               
               
               Cow position:chr24:24091333-24091141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 170

               
               
               Conread position:28-218
               
               
               Cow position:chr24:24165548-24165741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr24:27149390-27149578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 116

               
               
               Conread position:28-218
               
               
               Cow position:chr24:38814974-38815170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr24:18810838-18811031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:28-219
               
               
               Cow position:chr24:37267669-37267862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr24:6071594-6071788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 138

               
               
               Conread position:28-220
               
               
               Cow position:chr24:7846691-7846496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:28-220
               
               
               Cow position:chr24:17689604-17689413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):38, 62

               
               
               Conread position:28-221
               
               
               Cow position:chr24:19598912-19599112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr24:44776170-44775974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr24:18884403-18884600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):36, 118

               
               
               Conread position:28-223
               
               
               Cow position:chr24:34595722-34595522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr24:18730351-18730548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):39, 184

               
               
               Conread position:28-225
               
               
               Cow position:chr24:3176655-3176453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr24:15353449-15353651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:28-225
               
               
               Cow position:chr24:18344070-18344271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr24:19793377-19793177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 178

               
               
               Conread position:28-229
               
               
               Cow position:chr24:7275710-7275906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:28-231
               
               
               Cow position:chr24:23863622-23863416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-233
               
               
               Cow position:chr24:23575155-23574945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-239
               
               
               Cow position:chr24:17407396-17407608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:29-185
               
               
               Cow position:chr24:22221385-22221543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-204
               
               
               Cow position:chr24:33621473-33621296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:32-204
               
               
               Cow position:chr24:25756289-25756116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:32-213
               
               
               Cow position:chr24:40025366-40025190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:32-223
               
               
               Cow position:chr24:43499669-43499858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:33-204
               
               
               Cow position:chr24:35365696-35365524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 54

               
               
               Conread position:35-192
               
               
               Cow position:chr24:18874807-18874650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:35-200
               
               
               Cow position:chr24:14373568-14373402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:35-205
               
               
               Cow position:chr24:15473539-15473714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:35-216
               
               
               Cow position:chr24:10309654-10309833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:35-217
               
               
               Cow position:chr24:11736057-11735877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:35-220
               
               
               Cow position:chr24:26808605-26808788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):29, 71

               
               
               Conread position:35-221
               
               
               Cow position:chr24:28700066-28700244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:36-200
               
               
               Cow position:chr24:28062963-28063128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:36-204
               
               
               Cow position:chr24:250523-250353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr24:28775543-28775374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:36-204
               
               
               Cow position:chr24:37252172-37252340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):31, 87

               
               
               Conread position:36-217
               
               
               Cow position:chr24:9036201-9036382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:36-219
               
               
               Cow position:chr24:39760039-39760224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr24:36286584-36286766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:36-221
               
               
               Cow position:chr24:3656351-3656165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):30, 133

               
               
               Conread position:36-221
               
               
               Cow position:chr24:35335106-35335282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:36-222
               
               
               Cow position:chr24:22419975-22420163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):30, 142

               
               
               Conread position:36-223
               
               
               Cow position:chr24:24902894-24903085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:36-223
               
               
               Cow position:chr24:29677901-29677710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):30, 180

               
               
               Conread position:36-226
               
               
               Cow position:chr24:11035491-11035310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):145, 29

               
               
               Conread position:36-237
               
               
               Cow position:chr24:30235885-30236082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):31, 75

               
               
               Conread position:37-218
               
               
               Cow position:chr24:25142624-25142810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):6, 167

               
               
               Conread position:37-233
               
               
               Cow position:chr24:22567118-22567318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:39-199
               
               
               Cow position:chr24:19179420-19179259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):27, 44

               
               
               Conread position:39-199
               
               
               Cow position:chr24:27719509-27719353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):27, 84

               
               
               Conread position:39-201
               
               
               Cow position:chr24:16640928-16641092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-223
               
               
               Cow position:chr24:12120914-12121101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:40-200
               
               
               Cow position:chr24:32191074-32191237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-204
               
               
               Cow position:chr24:27220071-27219906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:40-204
               
               
               Cow position:chr24:43445995-43445829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):25, 73

               
               
               Conread position:40-207
               
               
               Cow position:chr24:23767846-23767678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:40-211
               
               
               Cow position:chr24:10671415-10671585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:40-215
               
               
               Cow position:chr24:10213743-10213917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):21, 76

               
               
               Conread position:40-218
               
               
               Cow position:chr24:6913671-6913491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-220
               
               
               Cow position:chr24:31049637-31049822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-221
               
               
               Cow position:chr24:6700339-6700153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 72

               
               
               Conread position:40-223
               
               
               Cow position:chr24:18021253-18021069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:40-223
               
               
               Cow position:chr24:21824998-21824811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:42-204
               
               
               Cow position:chr24:28476528-28476693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 114

               
               
               Conread position:42-206
               
               
               Cow position:chr24:16303656-16303500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 87

               
               
               Conread position:44-224
               
               
               Cow position:chr24:34168132-34167953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):162, 10

               
               
               Conread position:47-220
               
               
               Cow position:chr24:35210082-35210255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):63, 150

               
               
               Conread position:48-219
               
               
               Cow position:chr24:12241746-12241917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):15, 159

               
               
               Conread position:48-219
               
               
               Cow position:chr24:18324252-18324083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 8

               
               
               Conread position:50-183
               
               
               Cow position:chr24:42008046-42008180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):15, 114

               
               
               Conread position:50-212
               
               
               Cow position:chr24:20024861-20025024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 98

               
               
               Conread position:50-218
               
               
               Cow position:chr24:3193244-3193075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:52-220
               
               
               Cow position:chr24:19763498-19763330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:53-199
               
               
               Cow position:chr24:43027195-43027047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):13, 118

               
               
               Conread position:54-181
               
               
               Cow position:chr24:21196716-21196587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:56-223
               
               
               Cow position:chr24:37246208-37246037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 122

               
               
               Conread position:57-204
               
               
               Cow position:chr24:22155365-22155512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 47

               
               
               Conread position:58-219
               
               
               Cow position:chr24:30483904-30483748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 68

               
               
               Conread position:61-184
               
               
               Cow position:chr24:35632022-35632143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr24:18817429-18817552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr24:36173739-36173616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-186
               
               
               Cow position:chr24:38428070-38427946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr24:22641132-22641262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-197
               
               
               Cow position:chr24:415609-415744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr24:6929827-6929969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr24:27040090-27040231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr24:40578221-40578366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr24:27791692-27791553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr24:13626326-13626477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):48, 64

               
               
               Conread position:62-214
               
               
               Cow position:chr24:24155470-24155318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr24:26695905-26695752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr24:10125927-10126068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr24:17178646-17178804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):122, 134

               
               
               Conread position:62-223
               
               
               Cow position:chr24:18702441-18702599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):151, 28

               
               
               Conread position:62-224
               
               
               Cow position:chr24:11266809-11266970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr24:27919165-27919329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:62-226
               
               
               Cow position:chr24:24810566-24810728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:62-238
               
               
               Cow position:chr24:39488387-39488565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:63-173
               
               
               Cow position:chr24:124603-124713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-185
               
               
               Cow position:chr24:18741528-18741402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:63-220
               
               
               Cow position:chr24:43011328-43011164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:63-222
               
               
               Cow position:chr24:15861550-15861389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):139, 131

               
               
               Conread position:63-223
               
               
               Cow position:chr24:6488252-6488407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):127, 58

               
               
               Conread position:63-230
               
               
               Cow position:chr24:43028286-43028122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:64-222
               
               
               Cow position:chr24:38693834-38693677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:65-208
               
               
               Cow position:chr24:27323599-27323737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:65-212
               
               
               Cow position:chr24:17309092-17308951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:65-213
               
               
               Cow position:chr24:25082842-25082696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:65-228
               
               
               Cow position:chr24:25732911-25733073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):151, 0

               
               
               Conread position:65-237
               
               
               Cow position:chr24:35973-36145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-217
               
               
               Cow position:chr24:18754479-18754629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 130

               
               
               Conread position:67-221
               
               
               Cow position:chr24:18484948-18484793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 26

               
               
               Conread position:67-225
               
               
               Cow position:chr24:7917334-7917178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:68-201
               
               
               Cow position:chr24:27280229-27280357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):64, 93

               
               
               Conread position:68-218
               
               
               Cow position:chr24:22066618-22066468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-197
               
               
               Cow position:chr24:35405313-35405191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-204
               
               
               Cow position:chr24:18734326-18734198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:75-214
               
               
               Cow position:chr24:6159588-6159452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):129, 37

               
               
               Conread position:80-179
               
               
               Cow position:chr24:29505115-29505016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-212
               
               
               Cow position:chr24:35660189-35660319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:84-217
               
               
               Cow position:chr24:23637736-23637608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:86-232
               
               
               Cow position:chr24:29538246-29538104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):132, 44

               
               
               Conread position:88-211
               
               
               Cow position:chr24:10031642-10031764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):115, 54

               
               
               Conread position:94-218
               
               
               Cow position:chr24:120845-120723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:95-212
               
               
               Cow position:chr24:30544817-30544697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:113-204
               
               
               Cow position:chr24:40138916-40138825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:77
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-191
               
               
               Cow position:chr25:26072557-26072372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 14

               
               
               Conread position:1-192
               
               
               Cow position:chr25:17658611-17658804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:1-198
               
               
               Cow position:chr25:7306291-7306488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):41, 12

               
               
               Conread position:1-204
               
               
               Cow position:chr25:5807945-5808151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):13, 199

               
               
               Conread position:1-204
               
               
               Cow position:chr25:17474512-17474309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):12, 165

               
               
               Conread position:1-204
               
               
               Cow position:chr25:36873056-36872851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-205
               
               
               Cow position:chr25:11315904-11316107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 24

               
               
               Conread position:1-214
               
               
               Cow position:chr25:7380839-7380624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-214
               
               
               Cow position:chr25:11585518-11585741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):12, 204

               
               
               Conread position:1-217
               
               
               Cow position:chr25:29337340-29337558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):20, 171

               
               
               Conread position:1-220
               
               
               Cow position:chr25:28423143-28423365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:1-227
               
               
               Cow position:chr25:20008132-20008360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:2-201
               
               
               Cow position:chr25:1763084-1763285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:3-174
               
               
               Cow position:chr25:6718248-6718080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):35, 124

               
               
               Conread position:3-183
               
               
               Cow position:chr25:23323490-23323680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr25:17914778-17914988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-212
               
               
               Cow position:chr25:7726660-7726877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-212
               
               
               Cow position:chr25:23520030-23519826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:3-214
               
               
               Cow position:chr25:18760710-18760498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):17, 129

               
               
               Conread position:3-218
               
               
               Cow position:chr25:8346003-8345781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:3-218
               
               
               Cow position:chr25:12097838-12098054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 22

               
               
               Conread position:3-219
               
               
               Cow position:chr25:12305274-12305497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):23, 191

               
               
               Conread position:3-220
               
               
               Cow position:chr25:6115024-6115249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr25:18201928-18201709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):20, 165

               
               
               Conread position:3-222
               
               
               Cow position:chr25:30319449-30319225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):60, 16

               
               
               Conread position:3-234
               
               
               Cow position:chr25:26578596-26578364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):74, 62

               
               
               Conread position:4-186
               
               
               Cow position:chr25:9269347-9269526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:4-199
               
               
               Cow position:chr25:9615842-9616037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-201
               
               
               Cow position:chr25:1824092-1823891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):62, 197

               
               
               Conread position:4-204
               
               
               Cow position:chr25:9002677-9002873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-208
               
               
               Cow position:chr25:10504338-10504127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:4-213
               
               
               Cow position:chr25:25716649-25716857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:4-217
               
               
               Cow position:chr25:18491043-18491253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 129

               
               
               Conread position:4-223
               
               
               Cow position:chr25:433045-432827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):9, 166

               
               
               Conread position:4-233
               
               
               Cow position:chr25:20047508-20047738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 52

               
               
               Conread position:5-223
               
               
               Cow position:chr25:7311389-7311167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:5-223
               
               
               Cow position:chr25:12657309-12657083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:5-224
               
               
               Cow position:chr25:20069721-20069937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:6-204
               
               
               Cow position:chr25:7277319-7277121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:6-217
               
               
               Cow position:chr25:26225028-26224822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 115

               
               
               Conread position:6-220
               
               
               Cow position:chr25:36369824-36370041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-220
               
               
               Cow position:chr25:36375515-36375732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:166
               
               
               Alignm E-value:8.00141e-43
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:7-225
               
               
               Cow position:chr25:31705232-31705451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:8-220
               
               
               Cow position:chr25:14164202-14164417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-39
               
               
               Alignm gaps (pig, cow):18, 206

               
               
               Conread position:8-221
               
               
               Cow position:chr25:22154034-22154254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):57, 11

               
               
               Conread position:9-216
               
               
               Cow position:chr25:26269705-26269502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):56, 7

               
               
               Conread position:10-186
               
               
               Cow position:chr25:18646590-18646766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 120

               
               
               Conread position:10-218
               
               
               Cow position:chr25:12807047-12807263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:10-225
               
               
               Cow position:chr25:17725052-17725263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):202, 10

               
               
               Conread position:11-204
               
               
               Cow position:chr25:21547174-21547361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):55, 14

               
               
               Conread position:12-233
               
               
               Cow position:chr25:1982970-1982758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 114

               
               
               Conread position:14-220
               
               
               Cow position:chr25:32745353-32745556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 101

               
               
               Conread position:14-227
               
               
               Cow position:chr25:8411018-8410807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):51, 18

               
               
               Conread position:15-213
               
               
               Cow position:chr25:14945112-14944914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):52, 148

               
               
               Conread position:17-198
               
               
               Cow position:chr25:4157228-4157049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):50, 100

               
               
               Conread position:17-229
               
               
               Cow position:chr25:36017595-36017804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:19-169
               
               
               Cow position:chr25:10138338-10138491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:19-179
               
               
               Cow position:chr25:17342478-17342640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr25:9769436-9769604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr25:20157277-20157089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 35

               
               
               Conread position:19-211
               
               
               Cow position:chr25:5846789-5846594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-214
               
               
               Cow position:chr25:35762605-35762800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 109

               
               
               Conread position:19-218
               
               
               Cow position:chr25:20664262-20664059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-221
               
               
               Cow position:chr25:11956824-11957025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):47, 95

               
               
               Conread position:19-229
               
               
               Cow position:chr25:33555627-33555841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):45, 30

               
               
               Conread position:21-211
               
               
               Cow position:chr25:13304576-13304383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:24-181
               
               
               Cow position:chr25:11855524-11855366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:135
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:25-166
               
               
               Cow position:chr25:13049276-13049134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-183
               
               
               Cow position:chr25:7005538-7005698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-186
               
               
               Cow position:chr25:11857961-11857800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:25-192
               
               
               Cow position:chr25:22756635-22756804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr25:36155844-36156012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):43, 87

               
               
               Conread position:25-204
               
               
               Cow position:chr25:17704770-17704942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-204
               
               
               Cow position:chr25:37965283-37965467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 83

               
               
               Conread position:25-207
               
               
               Cow position:chr25:17724198-17724014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):23, 174

               
               
               Conread position:25-207
               
               
               Cow position:chr25:33311300-33311116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-209
               
               
               Cow position:chr25:13542960-13542776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 166

               
               
               Conread position:25-211
               
               
               Cow position:chr25:22768244-22768428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:25-213
               
               
               Cow position:chr25:16921771-16921583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):41, 172

               
               
               Conread position:25-214
               
               
               Cow position:chr25:28662136-28662321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:25-214
               
               
               Cow position:chr25:33101579-33101400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-215
               
               
               Cow position:chr25:20085603-20085790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-216
               
               
               Cow position:chr25:40904804-40904615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 162

               
               
               Conread position:25-218
               
               
               Cow position:chr25:7403315-7403116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 193

               
               
               Conread position:25-219
               
               
               Cow position:chr25:22373464-22373268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:25-219
               
               
               Cow position:chr25:36020436-36020627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:25-220
               
               
               Cow position:chr25:4192030-4192228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr25:33686659-33686466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:25-221
               
               
               Cow position:chr25:26087546-26087741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 14

               
               
               Conread position:25-222
               
               
               Cow position:chr25:8226129-8226328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:25-223
               
               
               Cow position:chr25:1838267-1838467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:25-223
               
               
               Cow position:chr25:6474061-6473853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-224
               
               
               Cow position:chr25:14215816-14216027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 21

               
               
               Conread position:25-224
               
               
               Cow position:chr25:15565977-15565766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:25-225
               
               
               Cow position:chr25:26136797-26136601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:25-233
               
               
               Cow position:chr25:21287500-21287300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 76

               
               
               Conread position:27-186
               
               
               Cow position:chr25:21501018-21500856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):39, 57

               
               
               Conread position:27-214
               
               
               Cow position:chr25:27825129-27825319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:27-218
               
               
               Cow position:chr25:21082381-21082186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:27-225
               
               
               Cow position:chr25:24115287-24115088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:28-183
               
               
               Cow position:chr25:23244973-23244821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:28-185
               
               
               Cow position:chr25:20402680-20402524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:28-185
               
               
               Cow position:chr25:21325929-21326086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):36, 142

               
               
               Conread position:28-186
               
               
               Cow position:chr25:11139667-11139827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-186
               
               
               Cow position:chr25:26306175-26306017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-192
               
               
               Cow position:chr25:18288740-18288578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-192
               
               
               Cow position:chr25:31514210-31514376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr25:536277-536099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr25:21289375-21289553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr25:24669415-24669248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:28-208
               
               
               Cow position:chr25:14225391-14225573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 166

               
               
               Conread position:28-213
               
               
               Cow position:chr25:26134071-26134260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr25:7817011-7817202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):38, 151

               
               
               Conread position:28-214
               
               
               Cow position:chr25:10657013-10656824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:28-214
               
               
               Cow position:chr25:20487409-20487223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:28-214
               
               
               Cow position:chr25:21443340-21443150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr25:26679255-26679439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:28-216
               
               
               Cow position:chr25:7590669-7590474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr25:8863363-8863171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr25:2262844-2263032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:28-218
               
               
               Cow position:chr25:18294285-18294090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr25:18551305-18551112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):39, 45

               
               
               Conread position:28-220
               
               
               Cow position:chr25:28597581-28597387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 170

               
               
               Conread position:28-221
               
               
               Cow position:chr25:35802634-35802440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):35, 135

               
               
               Conread position:28-221
               
               
               Cow position:chr25:40929976-40929779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr25:6464000-6463805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:28-223
               
               
               Cow position:chr25:22348434-22348237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 169

               
               
               Conread position:28-223
               
               
               Cow position:chr25:22565929-22565747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr25:5920973-5921171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 150

               
               
               Conread position:28-224
               
               
               Cow position:chr25:11271254-11271058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr25:33959223-33959024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:28-229
               
               
               Cow position:chr25:12206566-12206766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:28-233
               
               
               Cow position:chr25:14102695-14102899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:29-204
               
               
               Cow position:chr25:33100605-33100775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:29-212
               
               
               Cow position:chr25:11405826-11406011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:29-218
               
               
               Cow position:chr25:30709318-30709129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):35, 166

               
               
               Conread position:29-223
               
               
               Cow position:chr25:31101880-31102072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 175

               
               
               Conread position:29-224
               
               
               Cow position:chr25:26989227-26989424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):35, 164

               
               
               Conread position:31-215
               
               
               Cow position:chr25:23769855-23769671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 85

               
               
               Conread position:33-222
               
               
               Cow position:chr25:27520920-27520730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):32, 114

               
               
               Conread position:35-195
               
               
               Cow position:chr25:26061691-26061529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-203
               
               
               Cow position:chr25:9641001-9640831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:35-220
               
               
               Cow position:chr25:17919010-17919198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):30, 120

               
               
               Conread position:35-222
               
               
               Cow position:chr25:17119778-17119964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:35-223
               
               
               Cow position:chr25:3992815-3993001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 77

               
               
               Conread position:36-191
               
               
               Cow position:chr25:447866-447716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:36-205
               
               
               Cow position:chr25:40921590-40921757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:36-214
               
               
               Cow position:chr25:15999515-15999334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:36-226
               
               
               Cow position:chr25:3141540-3141725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:37-185
               
               
               Cow position:chr25:35339153-35339005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):5, 89

               
               
               Conread position:37-214
               
               
               Cow position:chr25:8347689-8347869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):5, 80

               
               
               Conread position:40-222
               
               
               Cow position:chr25:10407373-10407191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:41-167
               
               
               Cow position:chr25:18568175-18568047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:41-185
               
               
               Cow position:chr25:13443368-13443222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:41-213
               
               
               Cow position:chr25:32750117-32750289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:43-203
               
               
               Cow position:chr25:37648825-37648985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:50-185
               
               
               Cow position:chr25:36535369-36535233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):16, 114

               
               
               Conread position:50-200
               
               
               Cow position:chr25:13384534-13384686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:50-224
               
               
               Cow position:chr25:26642858-26643040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:52-214
               
               
               Cow position:chr25:22642317-22642487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:53-217
               
               
               Cow position:chr25:17141156-17141318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):16, 59

               
               
               Conread position:61-212
               
               
               Cow position:chr25:7185212-7185064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-183
               
               
               Cow position:chr25:7622884-7623005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr25:6812170-6812035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr25:14152250-14152387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr25:33272698-33272837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr25:35052557-35052419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):105, 132

               
               
               Conread position:62-204
               
               
               Cow position:chr25:9494770-9494913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr25:12215470-12215612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr25:18882211-18882068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr25:22119592-22119450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):124, 101

               
               
               Conread position:62-216
               
               
               Cow position:chr25:19849929-19850081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:62-219
               
               
               Cow position:chr25:28986924-28987080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr25:9556379-9556216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:62-226
               
               
               Cow position:chr25:34982093-34981929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-195
               
               
               Cow position:chr25:7673367-7673502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:63-204
               
               
               Cow position:chr25:28940075-28939936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:63-213
               
               
               Cow position:chr25:20523168-20523027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:63-214
               
               
               Cow position:chr25:7864399-7864542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:63-226
               
               
               Cow position:chr25:9025188-9025346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 26

               
               
               Conread position:64-199
               
               
               Cow position:chr25:12092681-12092818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:64-199
               
               
               Cow position:chr25:18480730-18480859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:64-203
               
               
               Cow position:chr25:19460140-19460278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:64-212
               
               
               Cow position:chr25:22917427-22917281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):117, 46

               
               
               Conread position:66-215
               
               
               Cow position:chr25:10135284-10135137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:66-216
               
               
               Cow position:chr25:7700024-7699874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-219
               
               
               Cow position:chr25:22203630-22203471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 36

               
               
               Conread position:66-221
               
               
               Cow position:chr25:11666693-11666847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:75-218
               
               
               Cow position:chr25:13380523-13380379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:79-207
               
               
               Cow position:chr25:16491180-16491305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 35

               
               
               Conread position:84-213
               
               
               Cow position:chr25:30462236-30462109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:84-223
               
               
               Cow position:chr25:12755407-12755271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:85-212
               
               
               Cow position:chr25:7358582-7358453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:88-223
               
               
               Cow position:chr25:6940397-6940268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):117, 27

               
               
               Conread position:89-197
               
               
               Cow position:chr25:11096146-11096038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-218
               
               
               Cow position:chr25:20018235-20018366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:97-204
               
               
               Cow position:chr25:32666352-32666456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:102-223
               
               
               Cow position:chr25:26909210-26909090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:108-204
               
               
               Cow position:chr25:7643344-7643248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:82
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:115-233
               
               
               Cow position:chr25:14212711-14212594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:124-219
               
               
               Cow position:chr25:12565266-12565167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:86
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:1-192
               
               
               Cow position:chr26:6823178-6823370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-199
               
               
               Cow position:chr26:34060352-34060553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):26, 128

               
               
               Conread position:1-204
               
               
               Cow position:chr26:7148286-7148078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:1-208
               
               
               Cow position:chr26:11672320-11672525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:1-211
               
               
               Cow position:chr26:33074478-33074267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):13, 115

               
               
               Conread position:1-213
               
               
               Cow position:chr26:32981455-32981239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:1-214
               
               
               Cow position:chr26:29664140-29663922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 200

               
               
               Conread position:1-217
               
               
               Cow position:chr26:27768284-27768505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:1-223
               
               
               Cow position:chr26:3706813-3707040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 19

               
               
               Conread position:1-223
               
               
               Cow position:chr26:33253297-33253075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:2-204
               
               
               Cow position:chr26:2701966-2701762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:3-199
               
               
               Cow position:chr26:10974148-10974346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):21, 98

               
               
               Conread position:3-204
               
               
               Cow position:chr26:7642556-7642351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:3-204
               
               
               Cow position:chr26:19145919-19146125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):13, 199

               
               
               Conread position:3-204
               
               
               Cow position:chr26:25663529-25663327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):61, 195

               
               
               Conread position:3-206
               
               
               Cow position:chr26:4167336-4167125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):23, 80

               
               
               Conread position:3-212
               
               
               Cow position:chr26:16550001-16550217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):22, 169

               
               
               Conread position:3-215
               
               
               Cow position:chr26:3071958-3071746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:3-215
               
               
               Cow position:chr26:35677870-35678085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):107, 22

               
               
               Conread position:3-221
               
               
               Cow position:chr26:10764229-10764451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):23, 103

               
               
               Conread position:3-224
               
               
               Cow position:chr26:9662211-9661986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:3-228
               
               
               Cow position:chr26:586862-586630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:3-234
               
               
               Cow position:chr26:12807278-12807054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:3-239
               
               
               Cow position:chr26:3757806-3758040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:177
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:4-183
               
               
               Cow position:chr26:32563367-32563551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):21, 116

               
               
               Conread position:4-192
               
               
               Cow position:chr26:16435638-16435440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 182

               
               
               Conread position:4-204
               
               
               Cow position:chr26:4363318-4363522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):21, 83

               
               
               Conread position:4-204
               
               
               Cow position:chr26:22348994-22348786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 120

               
               
               Conread position:4-204
               
               
               Cow position:chr26:24453889-24453687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 158

               
               
               Conread position:4-207
               
               
               Cow position:chr26:9099510-9099308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:4-215
               
               
               Cow position:chr26:5168416-5168626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:4-217
               
               
               Cow position:chr26:16796188-16795977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:4-219
               
               
               Cow position:chr26:5406999-5407219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):12, 168

               
               
               Conread position:4-222
               
               
               Cow position:chr26:4854563-4854782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:4-223
               
               
               Cow position:chr26:34580821-34581058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-225
               
               
               Cow position:chr26:32834559-32834332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):27, 207

               
               
               Conread position:4-226
               
               
               Cow position:chr26:4807576-4807804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:175
               
               
               Alignm E-value:2.94273e-44
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-226
               
               
               Cow position:chr26:23671434-23671660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:4-240
               
               
               Cow position:chr26:23624026-23623778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):22, 101

               
               
               Conread position:6-185
               
               
               Cow position:chr26:32601374-32601559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-192
               
               
               Cow position:chr26:19671502-19671688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 45

               
               
               Conread position:6-204
               
               
               Cow position:chr26:20260606-20260804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):14, 31

               
               
               Conread position:6-226
               
               
               Cow position:chr26:32830105-32830325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):7, 190

               
               
               Conread position:7-199
               
               
               Cow position:chr26:31173295-31173490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:8-192
               
               
               Cow position:chr26:12893403-12893219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 75

               
               
               Conread position:8-214
               
               
               Cow position:chr26:23097162-23096959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:9-216
               
               
               Cow position:chr26:13863009-13862807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):17, 83

               
               
               Conread position:10-185
               
               
               Cow position:chr26:9501735-9501913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):5, 157

               
               
               Conread position:10-199
               
               
               Cow position:chr26:2930231-2930036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-219
               
               
               Cow position:chr26:32503311-32503108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:14-218
               
               
               Cow position:chr26:21319977-21320180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:16-210
               
               
               Cow position:chr26:26245134-26244940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):51, 63

               
               
               Conread position:16-212
               
               
               Cow position:chr26:31382356-31382545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:16-223
               
               
               Cow position:chr26:35449100-35449297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:18-185
               
               
               Cow position:chr26:7085724-7085557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 53

               
               
               Conread position:18-204
               
               
               Cow position:chr26:28444860-28444669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:19-186
               
               
               Cow position:chr26:20769890-20770055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:19-191
               
               
               Cow position:chr26:31633767-31633941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-203
               
               
               Cow position:chr26:25225694-25225508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-212
               
               
               Cow position:chr26:16801019-16801215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):44, 172

               
               
               Conread position:19-214
               
               
               Cow position:chr26:14293189-14293382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:19-216
               
               
               Cow position:chr26:25504499-25504697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):47, 57

               
               
               Conread position:20-208
               
               
               Cow position:chr26:32655567-32655381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):29, 16

               
               
               Conread position:22-222
               
               
               Cow position:chr26:12992385-12992588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):19, 172

               
               
               Conread position:24-212
               
               
               Cow position:chr26:28202715-28202525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):24, 28

               
               
               Conread position:24-224
               
               
               Cow position:chr26:19459737-19459934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):41, 103

               
               
               Conread position:25-189
               
               
               Cow position:chr26:28243874-28244039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:25-192
               
               
               Cow position:chr26:34560126-34559961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:25-201
               
               
               Cow position:chr26:8811517-8811694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-204
               
               
               Cow position:chr26:6714257-6714077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:25-205
               
               
               Cow position:chr26:25526294-25526469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 96

               
               
               Conread position:25-212
               
               
               Cow position:chr26:18872654-18872842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:25-213
               
               
               Cow position:chr26:4644092-4643903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:25-217
               
               
               Cow position:chr26:11968091-11967896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):40, 108

               
               
               Conread position:25-219
               
               
               Cow position:chr26:27482521-27482326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:25-219
               
               
               Cow position:chr26:28246892-28247084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:25-221
               
               
               Cow position:chr26:829850-830053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr26:6037388-6037178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 29

               
               
               Conread position:25-223
               
               
               Cow position:chr26:6794190-6794387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:25-223
               
               
               Cow position:chr26:17212237-17212436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 181

               
               
               Conread position:25-225
               
               
               Cow position:chr26:8637794-8637996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:25-233
               
               
               Cow position:chr26:11538577-11538782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 169

               
               
               Conread position:25-234
               
               
               Cow position:chr26:1041044-1041257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 190

               
               
               Conread position:25-236
               
               
               Cow position:chr26:3192398-3192196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 54

               
               
               Conread position:25-240
               
               
               Cow position:chr26:9596058-9595842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):41, 193

               
               
               Conread position:27-219
               
               
               Cow position:chr26:9535566-9535747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:28-180
               
               
               Cow position:chr26:31382125-31381971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-184
               
               
               Cow position:chr26:29717085-29717241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 119

               
               
               Conread position:28-199
               
               
               Cow position:chr26:754863-754694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:28-199
               
               
               Cow position:chr26:23106380-23106202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr26:8478824-8478660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:28-204
               
               
               Cow position:chr26:16166647-16166471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):41, 142

               
               
               Conread position:28-204
               
               
               Cow position:chr26:32688592-32688776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-207
               
               
               Cow position:chr26:21822997-21822823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:28-214
               
               
               Cow position:chr26:20291644-20291463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:28-217
               
               
               Cow position:chr26:8811175-8811366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr26:34026989-34026795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:156
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr26:23481203-23481015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:28-218
               
               
               Cow position:chr26:31856757-31856946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 71

               
               
               Conread position:28-218
               
               
               Cow position:chr26:35553459-35553649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 82

               
               
               Conread position:28-219
               
               
               Cow position:chr26:31712020-31711824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr26:33175667-33175478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):38, 128

               
               
               Conread position:28-220
               
               
               Cow position:chr26:12028189-12027999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:28-220
               
               
               Cow position:chr26:30861701-30861508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:28-220
               
               
               Cow position:chr26:33881944-33882137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 15

               
               
               Conread position:28-220
               
               
               Cow position:chr26:35358976-35358781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-222
               
               
               Cow position:chr26:27163498-27163694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:28-223
               
               
               Cow position:chr26:13547601-13547802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr26:23142056-23141860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-223
               
               
               Cow position:chr26:32388526-32388725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):36, 182

               
               
               Conread position:28-224
               
               
               Cow position:chr26:647678-647481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 180

               
               
               Conread position:28-225
               
               
               Cow position:chr26:3930486-3930291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 61

               
               
               Conread position:28-229
               
               
               Cow position:chr26:5832984-5833183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:29-200
               
               
               Cow position:chr26:15132686-15132859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:29-204
               
               
               Cow position:chr26:17398625-17398800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:29-213
               
               
               Cow position:chr26:31892087-31892273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-217
               
               
               Cow position:chr26:218409-218221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 70

               
               
               Conread position:29-220
               
               
               Cow position:chr26:18763693-18763497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:31-223
               
               
               Cow position:chr26:16857614-16857808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 128

               
               
               Conread position:34-228
               
               
               Cow position:chr26:28777-28586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:35-225
               
               
               Cow position:chr26:25737506-25737687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:36-188
               
               
               Cow position:chr26:26407734-26407584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:36-201
               
               
               Cow position:chr26:23112090-23112259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-216
               
               
               Cow position:chr26:16233633-16233451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:37-233
               
               
               Cow position:chr26:33202014-33201824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):8, 80

               
               
               Conread position:39-185
               
               
               Cow position:chr26:14174359-14174507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-218
               
               
               Cow position:chr26:16797908-16797729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:39-223
               
               
               Cow position:chr26:31488552-31488366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:40-223
               
               
               Cow position:chr26:7190680-7190496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 15

               
               
               Conread position:41-183
               
               
               Cow position:chr26:32353659-32353520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:41-223
               
               
               Cow position:chr26:33096497-33096312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:42-224
               
               
               Cow position:chr26:13553222-13553041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:50-199
               
               
               Cow position:chr26:25029603-25029754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:50-213
               
               
               Cow position:chr26:30284139-30283974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):16, 56

               
               
               Conread position:50-215
               
               
               Cow position:chr26:21291721-21291551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 31

               
               
               Conread position:50-215
               
               
               Cow position:chr26:32842717-32842549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:50-223
               
               
               Cow position:chr26:29373832-29374006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 162

               
               
               Conread position:50-223
               
               
               Cow position:chr26:33728574-33728399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 163

               
               
               Conread position:50-224
               
               
               Cow position:chr26:22101880-22102045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):152, 35

               
               
               Conread position:54-219
               
               
               Cow position:chr26:1894306-1894147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):12, 71

               
               
               Conread position:56-204
               
               
               Cow position:chr26:31876130-31875982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-194
               
               
               Cow position:chr26:99049-99181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr26:135611-135471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr26:25244923-25244781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr26:34335824-34335965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr26:34114346-34114494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr26:33373299-33373143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr26:12852103-12851947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):142, 19

               
               
               Conread position:62-221
               
               
               Cow position:chr26:3559125-3558966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):151, 127

               
               
               Conread position:62-225
               
               
               Cow position:chr26:35530330-35530492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:63-201
               
               
               Cow position:chr26:4585128-4584991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):131, 61

               
               
               Conread position:63-223
               
               
               Cow position:chr26:10220143-10219981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:64-204
               
               
               Cow position:chr26:32518557-32518701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:64-212
               
               
               Cow position:chr26:21418371-21418223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):93, 133

               
               
               Conread position:65-218
               
               
               Cow position:chr26:33475783-33475936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-215
               
               
               Cow position:chr26:2623368-2623218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:68-218
               
               
               Cow position:chr26:10740162-10740009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):95, 123

               
               
               Conread position:69-210
               
               
               Cow position:chr26:10752380-10752523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):43, 128

               
               
               Conread position:70-219
               
               
               Cow position:chr26:15913161-15913311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):43, 31

               
               
               Conread position:75-179
               
               
               Cow position:chr26:25300013-25300117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-219
               
               
               Cow position:chr26:16423689-16423830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:77-204
               
               
               Cow position:chr26:15908664-15908538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:80-217
               
               
               Cow position:chr26:26919635-26919772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-220
               
               
               Cow position:chr26:33837757-33837619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-192
               
               
               Cow position:chr26:6741643-6741536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:88-218
               
               
               Cow position:chr26:24745078-24744955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:90-205
               
               
               Cow position:chr26:30955257-30955369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 20

               
               
               Conread position:91-214
               
               
               Cow position:chr26:31406266-31406386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:96-223
               
               
               Cow position:chr26:31205199-31205328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:108-222
               
               
               Cow position:chr26:25190168-25190285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:1-185
               
               
               Cow position:chr27:26489954-26490136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:1-185
               
               
               Cow position:chr27:28518252-28518062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:1-192
               
               
               Cow position:chr27:5539741-5539930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:1-192
               
               
               Cow position:chr27:17102850-17102662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-203
               
               
               Cow position:chr27:20548765-20548560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-204
               
               
               Cow position:chr27:6541586-6541385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-212
               
               
               Cow position:chr27:28931844-28932059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):25, 117

               
               
               Conread position:1-213
               
               
               Cow position:chr27:29236516-29236300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):65, 170

               
               
               Conread position:1-217
               
               
               Cow position:chr27:7346626-7346407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-219
               
               
               Cow position:chr27:16103761-16103548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 13

               
               
               Conread position:1-220
               
               
               Cow position:chr27:29319365-29319141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:1-223
               
               
               Cow position:chr27:10394908-10394705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 80

               
               
               Conread position:1-225
               
               
               Cow position:chr27:2592497-2592266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:1-225
               
               
               Cow position:chr27:24303901-24303670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):16, 175

               
               
               Conread position:1-225
               
               
               Cow position:chr27:29991493-29991731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:1-226
               
               
               Cow position:chr27:26111960-26112189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):19, 197

               
               
               Conread position:2-184
               
               
               Cow position:chr27:22254748-22254560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:2-213
               
               
               Cow position:chr27:26793828-26794042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):13, 96

               
               
               Conread position:3-185
               
               
               Cow position:chr27:23554373-23554560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:3-192
               
               
               Cow position:chr27:20045846-20045658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:3-203
               
               
               Cow position:chr27:16786785-16786583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):20, 80

               
               
               Conread position:3-204
               
               
               Cow position:chr27:13801765-13801555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):23, 157

               
               
               Conread position:3-209
               
               
               Cow position:chr27:19557341-19557140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 106

               
               
               Conread position:3-212
               
               
               Cow position:chr27:10307344-10307558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):23, 131

               
               
               Conread position:3-214
               
               
               Cow position:chr27:11435366-11435586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:3-215
               
               
               Cow position:chr27:11982690-11982908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.99997e-41
               
               
               Alignm gaps (pig, cow):23, 200

               
               
               Conread position:3-216
               
               
               Cow position:chr27:26437165-26437383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):18, 116

               
               
               Conread position:3-218
               
               
               Cow position:chr27:10323793-10323578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):18, 79

               
               
               Conread position:3-218
               
               
               Cow position:chr27:26121716-26121492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:3-219
               
               
               Cow position:chr27:27554724-27554944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:3-219
               
               
               Cow position:chr27:28254192-28253975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):12, 53

               
               
               Conread position:3-220
               
               
               Cow position:chr27:10404160-10404384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:3-221
               
               
               Cow position:chr27:18791553-18791780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):22, 203

               
               
               Conread position:3-223
               
               
               Cow position:chr27:27003308-27003528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 34

               
               
               Conread position:3-225
               
               
               Cow position:chr27:10979819-10979588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-227
               
               
               Cow position:chr27:26509201-26509428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:4-191
               
               
               Cow position:chr27:30702146-30701958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):21, 96

               
               
               Conread position:4-192
               
               
               Cow position:chr27:12596725-12596544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:4-197
               
               
               Cow position:chr27:30764986-30764789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):22, 67

               
               
               Conread position:4-199
               
               
               Cow position:chr27:2957360-2957172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 32

               
               
               Conread position:4-199
               
               
               Cow position:chr27:9977638-9977441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 120

               
               
               Conread position:4-201
               
               
               Cow position:chr27:1636980-1637171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:4-203
               
               
               Cow position:chr27:25809564-25809765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):22, 153

               
               
               Conread position:4-204
               
               
               Cow position:chr27:15925301-15925092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 179

               
               
               Conread position:4-207
               
               
               Cow position:chr27:18558312-18558105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:4-207
               
               
               Cow position:chr27:28896837-28896625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-217
               
               
               Cow position:chr27:30483348-30483569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 21

               
               
               Conread position:4-219
               
               
               Cow position:chr27:18435178-18435392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):21, 118

               
               
               Conread position:4-220
               
               
               Cow position:chr27:18507599-18507384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:4-220
               
               
               Cow position:chr27:26852631-26852846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):49, 206

               
               
               Conread position:4-221
               
               
               Cow position:chr27:12516140-12515929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):63, 20

               
               
               Conread position:4-221
               
               
               Cow position:chr27:20514774-20514557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):18, 168

               
               
               Conread position:4-221
               
               
               Cow position:chr27:25152040-25151822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 21

               
               
               Conread position:4-223
               
               
               Cow position:chr27:6550412-6550194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:4-225
               
               
               Cow position:chr27:26481240-26481467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):21, 193

               
               
               Conread position:4-233
               
               
               Cow position:chr27:27438549-27438783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 201

               
               
               Conread position:5-204
               
               
               Cow position:chr27:18688455-18688659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 197

               
               
               Conread position:5-204
               
               
               Cow position:chr27:31170110-31170322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:5-212
               
               
               Cow position:chr27:27442221-27442420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:5-219
               
               
               Cow position:chr27:20354544-20354335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):107, 20

               
               
               Conread position:6-185
               
               
               Cow position:chr27:29160033-29160215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:6-204
               
               
               Cow position:chr27:20484679-20484484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 118

               
               
               Conread position:6-204
               
               
               Cow position:chr27:26236275-26236078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):7, 61

               
               
               Conread position:6-212
               
               
               Cow position:chr27:6679421-6679634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 160

               
               
               Conread position:6-213
               
               
               Cow position:chr27:13639034-13639246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-215
               
               
               Cow position:chr27:19933018-19932803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-221
               
               
               Cow position:chr27:672610-672397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):59, 19

               
               
               Conread position:6-223
               
               
               Cow position:chr27:11480687-11480906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 132

               
               
               Conread position:6-223
               
               
               Cow position:chr27:26565737-26565525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:6-237
               
               
               Cow position:chr27:21677474-21677709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):14, 20

               
               
               Conread position:7-186
               
               
               Cow position:chr27:24331670-24331482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:7-197
               
               
               Cow position:chr27:26980018-26980208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):58, 10

               
               
               Conread position:8-175
               
               
               Cow position:chr27:24709508-24709333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:8-207
               
               
               Cow position:chr27:30872110-30872310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):13, 130

               
               
               Conread position:8-212
               
               
               Cow position:chr27:20749063-20749261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):18, 104

               
               
               Conread position:8-218
               
               
               Cow position:chr27:15315466-15315259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:10-179
               
               
               Cow position:chr27:23060170-23060341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:10-186
               
               
               Cow position:chr27:22559878-22560058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 138

               
               
               Conread position:10-192
               
               
               Cow position:chr27:29308292-29308105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:10-199
               
               
               Cow position:chr27:22268174-22267975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:10-204
               
               
               Cow position:chr27:23128409-23128215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:10-205
               
               
               Cow position:chr27:20078813-20078614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):29, 17

               
               
               Conread position:10-207
               
               
               Cow position:chr27:31248664-31248859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 113

               
               
               Conread position:10-217
               
               
               Cow position:chr27:11492376-11492168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 15

               
               
               Conread position:10-218
               
               
               Cow position:chr27:13875677-13875470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):10, 71

               
               
               Conread position:10-223
               
               
               Cow position:chr27:28015788-28015999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):5, 27

               
               
               Conread position:11-215
               
               
               Cow position:chr27:29246205-29246405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):56, 114

               
               
               Conread position:12-214
               
               
               Cow position:chr27:18121106-18121312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 13

               
               
               Conread position:12-217
               
               
               Cow position:chr27:1810145-1810352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:13-220
               
               
               Cow position:chr27:23860104-23859899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):52, 64

               
               
               Conread position:14-213
               
               
               Cow position:chr27:31498721-31498527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:14-220
               
               
               Cow position:chr27:1292687-1292477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 83

               
               
               Conread position:16-185
               
               
               Cow position:chr27:26909655-26909819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-204
               
               
               Cow position:chr27:12425227-12425038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 65

               
               
               Conread position:16-223
               
               
               Cow position:chr27:9504494-9504284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr27:30694273-30694439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-188
               
               
               Cow position:chr27:19452936-19452765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:19-211
               
               
               Cow position:chr27:21991080-21990885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):14, 22

               
               
               Conread position:19-214
               
               
               Cow position:chr27:16705185-16704993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:19-216
               
               
               Cow position:chr27:29249526-29249325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:19-218
               
               
               Cow position:chr27:28921958-28922156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:19-220
               
               
               Cow position:chr27:1353517-1353317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):47, 169

               
               
               Conread position:19-220
               
               
               Cow position:chr27:20869748-20869951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):47, 92

               
               
               Conread position:19-223
               
               
               Cow position:chr27:4264759-4264966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):47, 145

               
               
               Conread position:19-223
               
               
               Cow position:chr27:4544414-4544616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 33

               
               
               Conread position:19-228
               
               
               Cow position:chr27:16246736-16246533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):49, 93

               
               
               Conread position:19-231
               
               
               Cow position:chr27:29831763-29831982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):46, 178

               
               
               Conread position:20-219
               
               
               Cow position:chr27:23232849-23232648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:20-220
               
               
               Cow position:chr27:29877539-29877740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):24, 177

               
               
               Conread position:22-201
               
               
               Cow position:chr27:18543918-18543742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:24-204
               
               
               Cow position:chr27:22586894-22586712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:24-221
               
               
               Cow position:chr27:31183505-31183307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 163

               
               
               Conread position:24-223
               
               
               Cow position:chr27:15350418-15350619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:24-223
               
               
               Cow position:chr27:20327429-20327227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:24-227
               
               
               Cow position:chr27:4944585-4944777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:25-160
               
               
               Cow position:chr27:27747537-27747674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:25-184
               
               
               Cow position:chr27:13318046-13318207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr27:23177384-23177543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:25-187
               
               
               Cow position:chr27:7958902-7959064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 65

               
               
               Conread position:25-199
               
               
               Cow position:chr27:11561704-11561530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:25-199
               
               
               Cow position:chr27:15668843-15669019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-200
               
               
               Cow position:chr27:18491484-18491306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:25-201
               
               
               Cow position:chr27:26984090-26983916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 95

               
               
               Conread position:25-204
               
               
               Cow position:chr27:5553398-5553222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 126

               
               
               Conread position:25-204
               
               
               Cow position:chr27:20048562-20048387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-204
               
               
               Cow position:chr27:27449957-27450132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:25-204
               
               
               Cow position:chr27:27827922-27828105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 176

               
               
               Conread position:25-204
               
               
               Cow position:chr27:30455922-30455743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):40, 112

               
               
               Conread position:25-205
               
               
               Cow position:chr27:19660860-19660677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr27:6162482-6162664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 78

               
               
               Conread position:25-215
               
               
               Cow position:chr27:11145807-11145621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 70

               
               
               Conread position:25-216
               
               
               Cow position:chr27:18752784-18752585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-35
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:25-217
               
               
               Cow position:chr27:27740363-27740554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 169

               
               
               Conread position:25-218
               
               
               Cow position:chr27:15867318-15867129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:25-219
               
               
               Cow position:chr27:16965507-16965308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:25-220
               
               
               Cow position:chr27:11208626-11208822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-36
               
               
               Alignm gaps (pig, cow):40, 180

               
               
               Conread position:25-221
               
               
               Cow position:chr27:30868812-30869017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 181

               
               
               Conread position:25-222
               
               
               Cow position:chr27:3518433-3518235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-226
               
               
               Cow position:chr27:13940629-13940823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:25-228
               
               
               Cow position:chr27:21951050-21951255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:28-183
               
               
               Cow position:chr27:23930712-23930866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr27:232479-232320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr27:11993941-11994098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:28-185
               
               
               Cow position:chr27:22489202-22489041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr27:22735666-22735825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr27:6499986-6499812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr27:11454244-11454418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-201
               
               
               Cow position:chr27:11323255-11323080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr27:18031150-18031320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):35, 21

               
               
               Conread position:28-204
               
               
               Cow position:chr27:26226365-26226540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:28-207
               
               
               Cow position:chr27:15926721-15926544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):18, 38

               
               
               Conread position:28-210
               
               
               Cow position:chr27:19576398-19576582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 23

               
               
               Conread position:28-211
               
               
               Cow position:chr27:17908334-17908520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr27:12658423-12658612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr27:23507577-23507392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:28-214
               
               
               Cow position:chr27:14818158-14817971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 161

               
               
               Conread position:28-214
               
               
               Cow position:chr27:15237738-15237552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-214
               
               
               Cow position:chr27:19292886-19293074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr27:6290399-6290210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 148

               
               
               Conread position:28-219
               
               
               Cow position:chr27:15871086-15870892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-220
               
               
               Cow position:chr27:18988148-18987954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr27:19992079-19991884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:28-220
               
               
               Cow position:chr27:24007393-24007199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-222
               
               
               Cow position:chr27:17397529-17397714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-223
               
               
               Cow position:chr27:7304679-7304876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:28-223
               
               
               Cow position:chr27:20719213-20719016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr27:21202118-21201919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr27:26314198-26314394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:28-223
               
               
               Cow position:chr27:30914935-30914740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:28-224
               
               
               Cow position:chr27:31386706-31386901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:28-231
               
               
               Cow position:chr27:27648392-27648596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:28-233
               
               
               Cow position:chr27:13869548-13869341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-184
               
               
               Cow position:chr27:26188754-26188597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:29-199
               
               
               Cow position:chr27:26118424-26118252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:29-201
               
               
               Cow position:chr27:178787-178618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:29-201
               
               
               Cow position:chr27:18873972-18873806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:29-203
               
               
               Cow position:chr27:29614966-29614793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 89

               
               
               Conread position:29-216
               
               
               Cow position:chr27:27558581-27558768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):38, 20

               
               
               Conread position:30-217
               
               
               Cow position:chr27:6925008-6924818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:30-223
               
               
               Cow position:chr27:26400798-26400985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):35, 86

               
               
               Conread position:32-212
               
               
               Cow position:chr27:12947873-12948054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):33, 166

               
               
               Conread position:35-185
               
               
               Cow position:chr27:20637142-20637289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):31, 57

               
               
               Conread position:35-199
               
               
               Cow position:chr27:7649664-7649836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 124

               
               
               Conread position:35-204
               
               
               Cow position:chr27:20266307-20266475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:35-212
               
               
               Cow position:chr27:19074104-19074281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):32, 42

               
               
               Conread position:35-212
               
               
               Cow position:chr27:25000042-25000223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):29, 172

               
               
               Conread position:35-214
               
               
               Cow position:chr27:15454129-15453956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 88

               
               
               Conread position:35-218
               
               
               Cow position:chr27:22583665-22583481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 171

               
               
               Conread position:36-186
               
               
               Cow position:chr27:7412310-7412162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:36-186
               
               
               Cow position:chr27:10994611-10994458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-194
               
               
               Cow position:chr27:29693395-29693227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-201
               
               
               Cow position:chr27:19779794-19779631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 82

               
               
               Conread position:36-204
               
               
               Cow position:chr27:20612441-20612271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:36-206
               
               
               Cow position:chr27:18748992-18749170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):16, 11

               
               
               Conread position:36-207
               
               
               Cow position:chr27:22171217-22171048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:36-215
               
               
               Cow position:chr27:1190556-1190740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-219
               
               
               Cow position:chr27:15865524-15865347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:36-219
               
               
               Cow position:chr27:22748245-22748063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:36-220
               
               
               Cow position:chr27:426887-426705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:36-223
               
               
               Cow position:chr27:10581450-10581269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:36-223
               
               
               Cow position:chr27:19483184-19483372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):28, 129

               
               
               Conread position:36-224
               
               
               Cow position:chr27:11077754-11077564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-236
               
               
               Cow position:chr27:31157729-31157530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:37-186
               
               
               Cow position:chr27:26317982-26317834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):28, 133

               
               
               Conread position:37-197
               
               
               Cow position:chr27:23994495-23994658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:39-200
               
               
               Cow position:chr27:11151583-11151426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr27:6505331-6505507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:39-226
               
               
               Cow position:chr27:18760599-18760409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 55

               
               
               Conread position:40-199
               
               
               Cow position:chr27:31515636-31515798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-217
               
               
               Cow position:chr27:10598902-10598723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 60

               
               
               Conread position:40-218
               
               
               Cow position:chr27:9956518-9956698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:42-215
               
               
               Cow position:chr27:26154232-26154055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:42-223
               
               
               Cow position:chr27:26245632-26245817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:50-187
               
               
               Cow position:chr27:26625112-26624974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:50-203
               
               
               Cow position:chr27:4486874-4487028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 40

               
               
               Conread position:50-219
               
               
               Cow position:chr27:27020194-27020360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):15, 109

               
               
               Conread position:50-220
               
               
               Cow position:chr27:21054363-21054194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):16, 148

               
               
               Conread position:50-221
               
               
               Cow position:chr27:17912618-17912792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-240
               
               
               Cow position:chr27:19774974-19774779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:51-219
               
               
               Cow position:chr27:22181972-22181796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:52-226
               
               
               Cow position:chr27:30458729-30458899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:54-230
               
               
               Cow position:chr27:22614760-22614582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 157

               
               
               Conread position:56-226
               
               
               Cow position:chr27:19496777-19496606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:58-204
               
               
               Cow position:chr27:23594217-23594071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 137

               
               
               Conread position:61-212
               
               
               Cow position:chr27:14472284-14472432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:61-225
               
               
               Cow position:chr27:11986401-11986566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:62-186
               
               
               Cow position:chr27:27058514-27058637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:62-197
               
               
               Cow position:chr27:29816738-29816872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr27:16275790-16275925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:62-203
               
               
               Cow position:chr27:13236547-13236688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 135

               
               
               Conread position:62-204
               
               
               Cow position:chr27:19681841-19681699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-206
               
               
               Cow position:chr27:20552892-20553028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr27:13181794-13181646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr27:30441594-30441444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):36, 95

               
               
               Conread position:62-214
               
               
               Cow position:chr27:11464541-11464691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr27:21101401-21101553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):132, 42

               
               
               Conread position:62-217
               
               
               Cow position:chr27:21978250-21978404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):51, 28

               
               
               Conread position:62-217
               
               
               Cow position:chr27:29613599-29613753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):139, 114

               
               
               Conread position:62-218
               
               
               Cow position:chr27:26173390-26173234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):142, 149

               
               
               Conread position:62-220
               
               
               Cow position:chr27:26467669-26467826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr27:17472702-17472549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):107, 57

               
               
               Conread position:62-223
               
               
               Cow position:chr27:27012588-27012427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr27:4413930-4414086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:62-228
               
               
               Cow position:chr27:20825901-20826067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):63, 135

               
               
               Conread position:62-230
               
               
               Cow position:chr27:212845-212672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:62-239
               
               
               Cow position:chr27:31373080-31373256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):148, 131

               
               
               Conread position:63-192
               
               
               Cow position:chr27:12459177-12459050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:63-199
               
               
               Cow position:chr27:700203-700339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-212
               
               
               Cow position:chr27:6752069-6751921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:63-218
               
               
               Cow position:chr27:7935269-7935418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:64-183
               
               
               Cow position:chr27:24731148-24731267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-204
               
               
               Cow position:chr27:5480689-5480828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:64-208
               
               
               Cow position:chr27:31443943-31443802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:64-220
               
               
               Cow position:chr27:19668915-19669068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:65-215
               
               
               Cow position:chr27:16886988-16886836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 12

               
               
               Conread position:66-204
               
               
               Cow position:chr27:19653686-19653827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:66-237
               
               
               Cow position:chr27:15162928-15162757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 151

               
               
               Conread position:67-217
               
               
               Cow position:chr27:24952070-24952213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:67-219
               
               
               Cow position:chr27:24966989-24967140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:67-219
               
               
               Cow position:chr27:29458216-29458064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):135, 61

               
               
               Conread position:68-181
               
               
               Cow position:chr27:20368919-20368805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:69-221
               
               
               Cow position:chr27:20055902-20055759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:71-219
               
               
               Cow position:chr27:6660984-6660841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:75-220
               
               
               Cow position:chr27:28472814-28472958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:78-221
               
               
               Cow position:chr27:14269453-14269595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):88, 132

               
               
               Conread position:80-213
               
               
               Cow position:chr27:14675304-14675429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:82-219
               
               
               Cow position:chr27:17173141-17173010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:88-212
               
               
               Cow position:chr27:20590479-20590355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):114, 64

               
               
               Conread position:88-223
               
               
               Cow position:chr27:12945895-12945757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:89-227
               
               
               Cow position:chr27:26883395-26883532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:91-204
               
               
               Cow position:chr27:26315281-26315390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:91-221
               
               
               Cow position:chr27:30374719-30374853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:91-223
               
               
               Cow position:chr27:21696768-21696902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:92-219
               
               
               Cow position:chr27:31479137-31479010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:93-214
               
               
               Cow position:chr27:26134958-26134837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:93-224
               
               
               Cow position:chr27:16088651-16088522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:95-215
               
               
               Cow position:chr27:22325324-22325444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:95-219
               
               
               Cow position:chr27:28058296-28058169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 14

               
               
               Conread position:97-212
               
               
               Cow position:chr27:634566-634685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:98-220
               
               
               Cow position:chr27:9281732-9281611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:107-224
               
               
               Cow position:chr27:6888384-6888501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:90
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr28:3726204-3725993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):13, 117

               
               
               Conread position:1-224
               
               
               Cow position:chr28:21103818-21103592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 12

               
               
               Conread position:3-191
               
               
               Cow position:chr28:6321822-6322017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):18, 84

               
               
               Conread position:3-191
               
               
               Cow position:chr28:27721707-27721894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:3-201
               
               
               Cow position:chr28:19262582-19262378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 198

               
               
               Conread position:3-204
               
               
               Cow position:chr28:2523948-2524153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):23, 170

               
               
               Conread position:3-204
               
               
               Cow position:chr28:5428742-5428549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):62, 37

               
               
               Conread position:3-211
               
               
               Cow position:chr28:14242698-14242914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:3-212
               
               
               Cow position:chr28:4282485-4282272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:3-212
               
               
               Cow position:chr28:6283483-6283272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 146

               
               
               Conread position:3-213
               
               
               Cow position:chr28:5224712-5224924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:3-218
               
               
               Cow position:chr28:11398792-11398568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr28:34230233-34230456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):17, 201

               
               
               Conread position:3-221
               
               
               Cow position:chr28:751232-751458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr28:30293584-30293358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):23, 178

               
               
               Conread position:3-225
               
               
               Cow position:chr28:11411531-11411307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):27, 120

               
               
               Conread position:3-226
               
               
               Cow position:chr28:13133637-13133865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):20, 201

               
               
               Conread position:3-229
               
               
               Cow position:chr28:4937237-4937005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 199

               
               
               Conread position:4-174
               
               
               Cow position:chr28:4138665-4138486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-185
               
               
               Cow position:chr28:21363753-21363932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:4-192
               
               
               Cow position:chr28:4185912-4186102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):22, 133

               
               
               Conread position:4-199
               
               
               Cow position:chr28:12951428-12951622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):22, 123

               
               
               Conread position:4-201
               
               
               Cow position:chr28:5231950-5232148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:4-204
               
               
               Cow position:chr28:5817852-5818049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 10

               
               
               Conread position:4-213
               
               
               Cow position:chr28:10495291-10495080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-35
               
               
               Alignm gaps (pig, cow):19, 166

               
               
               Conread position:4-217
               
               
               Cow position:chr28:4022679-4022900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-217
               
               
               Cow position:chr28:19994940-19994724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):18, 194

               
               
               Conread position:4-218
               
               
               Cow position:chr28:19015722-19015926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-219
               
               
               Cow position:chr28:4163573-4163354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:5.99994e-41
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-219
               
               
               Cow position:chr28:34877961-34877748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:4-220
               
               
               Cow position:chr28:28765897-28765677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):19, 172

               
               
               Conread position:4-221
               
               
               Cow position:chr28:13527208-13527430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):61, 12

               
               
               Conread position:4-223
               
               
               Cow position:chr28:10615940-10615722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:4-223
               
               
               Cow position:chr28:25700857-25700640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:4-223
               
               
               Cow position:chr28:26826229-26826454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):23, 209

               
               
               Conread position:4-226
               
               
               Cow position:chr28:13356359-13356136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):47, 21

               
               
               Conread position:4-230
               
               
               Cow position:chr28:27218329-27218560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):17, 55

               
               
               Conread position:4-231
               
               
               Cow position:chr28:11866659-11866433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):22, 132

               
               
               Conread position:5-223
               
               
               Cow position:chr28:3011256-3011037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:6-183
               
               
               Cow position:chr28:20397358-20397176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:6-192
               
               
               Cow position:chr28:8716375-8716181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:6-216
               
               
               Cow position:chr28:30922045-30921830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):39, 18

               
               
               Conread position:6-222
               
               
               Cow position:chr28:15362591-15362812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):7, 127

               
               
               Conread position:6-223
               
               
               Cow position:chr28:8347743-8347963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 7

               
               
               Conread position:6-232
               
               
               Cow position:chr28:7697970-7697742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):19, 208

               
               
               Conread position:6-234
               
               
               Cow position:chr28:10606619-10606400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:8-182
               
               
               Cow position:chr28:18369997-18369824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:8-223
               
               
               Cow position:chr28:26820264-26820047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 191

               
               
               Conread position:8-226
               
               
               Cow position:chr28:8827177-8827397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:10-153
               
               
               Cow position:chr28:8167338-8167193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:10-199
               
               
               Cow position:chr28:34843560-34843366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-206
               
               
               Cow position:chr28:23460159-23460356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):46, 15

               
               
               Conread position:10-207
               
               
               Cow position:chr28:11562225-11562029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-40
               
               
               Alignm gaps (pig, cow):50, 7

               
               
               Conread position:10-219
               
               
               Cow position:chr28:5630110-5630325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:169
               
               
               Alignm E-value:8.40779e-45
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-220
               
               
               Cow position:chr28:11197656-11197444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 9

               
               
               Conread position:11-204
               
               
               Cow position:chr28:4090041-4089850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):14, 117

               
               
               Conread position:11-204
               
               
               Cow position:chr28:17739838-17740038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:11-218
               
               
               Cow position:chr28:10297868-10298063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):12, 103

               
               
               Conread position:16-204
               
               
               Cow position:chr28:118634-118825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:16-218
               
               
               Cow position:chr28:117738-117532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:18-226
               
               
               Cow position:chr28:11827710-11827922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr28:17680649-17680817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr28:5441870-5441692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:19-204
               
               
               Cow position:chr28:10958829-10959009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 107

               
               
               Conread position:19-204
               
               
               Cow position:chr28:22132938-22133119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):44, 24

               
               
               Conread position:19-213
               
               
               Cow position:chr28:4073996-4074197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:19-213
               
               
               Cow position:chr28:18791067-18791253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:19-213
               
               
               Cow position:chr28:20173866-20174057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:19-216
               
               
               Cow position:chr28:7413686-7413884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):46, 180

               
               
               Conread position:19-216
               
               
               Cow position:chr28:11815051-11814858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:19-218
               
               
               Cow position:chr28:4307870-4307669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):44, 194

               
               
               Conread position:19-218
               
               
               Cow position:chr28:12628763-12628961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):46, 170

               
               
               Conread position:19-218
               
               
               Cow position:chr28:13448150-13448340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):47, 88

               
               
               Conread position:19-219
               
               
               Cow position:chr28:10252890-10252692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):44, 87

               
               
               Conread position:19-220
               
               
               Cow position:chr28:5144494-5144288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 197

               
               
               Conread position:19-220
               
               
               Cow position:chr28:23262425-23262223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 32

               
               
               Conread position:19-226
               
               
               Cow position:chr28:11059527-11059723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):46, 62

               
               
               Conread position:20-217
               
               
               Cow position:chr28:5199852-5200050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):45, 178

               
               
               Conread position:20-217
               
               
               Cow position:chr28:29989082-29988887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):47, 72

               
               
               Conread position:20-224
               
               
               Cow position:chr28:21744743-21744942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:22-217
               
               
               Cow position:chr28:29500430-29500627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:24-225
               
               
               Cow position:chr28:6563866-6563663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:161
               
               
               Alignm E-value:7.9874e-44
               
               
               Alignm gaps (pig, cow):19, 189

               
               
               Conread position:25-181
               
               
               Cow position:chr28:19118002-19118160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 83

               
               
               Conread position:25-184
               
               
               Cow position:chr28:3729986-3729829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 140

               
               
               Conread position:25-184
               
               
               Cow position:chr28:26743659-26743822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr28:26269419-26269591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr28:20968547-20968377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr28:5552682-5552501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr28:11346454-11346283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:25-201
               
               
               Cow position:chr28:5236571-5236388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 179

               
               
               Conread position:25-203
               
               
               Cow position:chr28:4881207-4881034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):41, 96

               
               
               Conread position:25-204
               
               
               Cow position:chr28:777708-777887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:25-204
               
               
               Cow position:chr28:10977874-10978049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 75

               
               
               Conread position:25-204
               
               
               Cow position:chr28:26960876-26960702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:25-207
               
               
               Cow position:chr28:5609884-5609704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:25-213
               
               
               Cow position:chr28:11307485-11307297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 134

               
               
               Conread position:25-214
               
               
               Cow position:chr28:10196832-10196650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):58, 81

               
               
               Conread position:25-214
               
               
               Cow position:chr28:27445540-27445355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:25-217
               
               
               Cow position:chr28:7964645-7964456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 75

               
               
               Conread position:25-219
               
               
               Cow position:chr28:13048251-13048059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 153

               
               
               Conread position:25-220
               
               
               Cow position:chr28:5673908-5674097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:25-220
               
               
               Cow position:chr28:7350687-7350879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:25-220
               
               
               Cow position:chr28:20281791-20281976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:25-223
               
               
               Cow position:chr28:5235914-5236102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr28:6935146-6934949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):35, 170

               
               
               Conread position:25-223
               
               
               Cow position:chr28:26982705-26982507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:25-224
               
               
               Cow position:chr28:2892285-2892487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-224
               
               
               Cow position:chr28:24698723-24698923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-225
               
               
               Cow position:chr28:22085509-22085318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:25-227
               
               
               Cow position:chr28:11743787-11743593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):169, 21

               
               
               Conread position:25-233
               
               
               Cow position:chr28:21008632-21008432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):42, 25

               
               
               Conread position:25-237
               
               
               Cow position:chr28:1655061-1654845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:26-185
               
               
               Cow position:chr28:18608334-18608173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:26-215
               
               
               Cow position:chr28:25518732-25518535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):5, 154

               
               
               Conread position:27-205
               
               
               Cow position:chr28:3759025-3759209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:27-223
               
               
               Cow position:chr28:6301116-6301314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:7.00649e-43
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr28:17071373-17071532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr28:12973917-12974095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr28:25827695-25827517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr28:28903524-28903348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):36, 88

               
               
               Conread position:28-205
               
               
               Cow position:chr28:9109252-9109423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:28-212
               
               
               Cow position:chr28:8936186-8936366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 67

               
               
               Conread position:28-214
               
               
               Cow position:chr28:9677705-9677882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:28-214
               
               
               Cow position:chr28:21868493-21868676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:28-217
               
               
               Cow position:chr28:4158991-4159186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:28-217
               
               
               Cow position:chr28:6358378-6358186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr28:5254910-5255094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 58

               
               
               Conread position:28-218
               
               
               Cow position:chr28:7132346-7132154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr28:9426314-9426124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:28-219
               
               
               Cow position:chr28:19128133-19127943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):178, 28

               
               
               Conread position:28-219
               
               
               Cow position:chr28:32014820-32015013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):37, 94

               
               
               Conread position:28-220
               
               
               Cow position:chr28:13245597-13245793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr28:22332564-22332753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):39, 142

               
               
               Conread position:28-220
               
               
               Cow position:chr28:26264863-26265057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr28:28602788-28602984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:28-223
               
               
               Cow position:chr28:2801262-2801465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):35, 44

               
               
               Conread position:28-223
               
               
               Cow position:chr28:4866538-4866350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 89

               
               
               Conread position:28-223
               
               
               Cow position:chr28:5403007-5402813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):37, 81

               
               
               Conread position:28-223
               
               
               Cow position:chr28:18797356-18797535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):38, 58

               
               
               Conread position:28-224
               
               
               Cow position:chr28:24887628-24887826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-226
               
               
               Cow position:chr28:10053289-10053101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:29-195
               
               
               Cow position:chr28:15601312-15601476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 121

               
               
               Conread position:29-199
               
               
               Cow position:chr28:7644777-7644950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):29, 45

               
               
               Conread position:29-206
               
               
               Cow position:chr28:19038982-19038803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:29-207
               
               
               Cow position:chr28:1490356-1490177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):37, 169

               
               
               Conread position:29-213
               
               
               Cow position:chr28:4077309-4077119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 172

               
               
               Conread position:29-213
               
               
               Cow position:chr28:8358934-8359120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-217
               
               
               Cow position:chr28:659258-659063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-219
               
               
               Cow position:chr28:3484617-3484812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:29-225
               
               
               Cow position:chr28:19055051-19055250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:30-204
               
               
               Cow position:chr28:26304102-26304277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-33
               
               
               Alignm gaps (pig, cow):37, 10

               
               
               Conread position:35-185
               
               
               Cow position:chr28:12672422-12672269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-194
               
               
               Cow position:chr28:4870762-4870595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-199
               
               
               Cow position:chr28:8656123-8655959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):30, 71

               
               
               Conread position:35-199
               
               
               Cow position:chr28:30385195-30385361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr28:4643727-4643560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:35-214
               
               
               Cow position:chr28:32372288-32372457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):31, 23

               
               
               Conread position:36-201
               
               
               Cow position:chr28:11310056-11309881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr28:4013128-4013293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:36-205
               
               
               Cow position:chr28:5437041-5436874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:36-215
               
               
               Cow position:chr28:3492740-3492564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:36-216
               
               
               Cow position:chr28:9639694-9639877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):29, 178

               
               
               Conread position:36-218
               
               
               Cow position:chr28:3423821-3424001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:36-219
               
               
               Cow position:chr28:16252362-16252181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):5, 86

               
               
               Conread position:36-219
               
               
               Cow position:chr28:17620317-17620132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-38
               
               
               Alignm gaps (pig, cow):31, 20

               
               
               Conread position:36-220
               
               
               Cow position:chr28:9705694-9705882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):31, 165

               
               
               Conread position:36-221
               
               
               Cow position:chr28:3678406-3678586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:36-223
               
               
               Cow position:chr28:2077544-2077734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:36-224
               
               
               Cow position:chr28:33561409-33561599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):27, 63

               
               
               Conread position:36-225
               
               
               Cow position:chr28:17738109-17737917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr28:16200696-16200520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:143
               
               
               Alignm E-value:6.00036e-42
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-221
               
               
               Cow position:chr28:34463961-34464147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:40-220
               
               
               Cow position:chr28:34830202-34830379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:40-232
               
               
               Cow position:chr28:24672313-24672508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-239
               
               
               Cow position:chr28:1383231-1383024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):25, 161

               
               
               Conread position:40-240
               
               
               Cow position:chr28:3406367-3406167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:42-204
               
               
               Cow position:chr28:11828912-11828750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 153

               
               
               Conread position:43-188
               
               
               Cow position:chr28:4227525-4227671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:43-219
               
               
               Cow position:chr28:21118728-21118906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:44-212
               
               
               Cow position:chr28:16159819-16159651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):20, 60

               
               
               Conread position:45-183
               
               
               Cow position:chr28:22427459-22427318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-192
               
               
               Cow position:chr28:2821316-2821460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-199
               
               
               Cow position:chr28:13174498-13174348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):15, 65

               
               
               Conread position:50-199
               
               
               Cow position:chr28:22278574-22278419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-212
               
               
               Cow position:chr28:3311166-3311002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-37
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:50-218
               
               
               Cow position:chr28:4884195-4884032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):17, 75

               
               
               Conread position:50-223
               
               
               Cow position:chr28:3257046-3257219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 65

               
               
               Conread position:52-183
               
               
               Cow position:chr28:5188367-5188240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):11, 69

               
               
               Conread position:52-215
               
               
               Cow position:chr28:22274035-22274201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:52-221
               
               
               Cow position:chr28:30088109-30087938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:54-220
               
               
               Cow position:chr28:15411743-15411904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:56-215
               
               
               Cow position:chr28:18474712-18474872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):76, 142

               
               
               Conread position:58-204
               
               
               Cow position:chr28:19394937-19395074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr28:8141727-8141850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):103, 91

               
               
               Conread position:62-191
               
               
               Cow position:chr28:5273358-5273229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr28:7523344-7523216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr28:16857035-16856907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr28:22308713-22308843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-194
               
               
               Cow position:chr28:15295308-15295439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):114, 62

               
               
               Conread position:62-201
               
               
               Cow position:chr28:24767476-24767616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr28:25973611-25973749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr28:10480736-10480591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr28:18740420-18740285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:62-208
               
               
               Cow position:chr28:21263229-21263367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr28:23728233-23728092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr28:21766027-21766175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr28:14657785-14657939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr28:2825491-2825645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr28:26944082-26943926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr28:18847629-18847788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr28:11239246-11239085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):86, 110

               
               
               Conread position:62-223
               
               
               Cow position:chr28:5262588-5262748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:62-228
               
               
               Cow position:chr28:23676385-23676554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:62-235
               
               
               Cow position:chr28:11798707-11798531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):52, 35

               
               
               Conread position:63-193
               
               
               Cow position:chr28:22183068-22182933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:63-199
               
               
               Cow position:chr28:5294929-5294796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:63-201
               
               
               Cow position:chr28:8165143-8165005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-220
               
               
               Cow position:chr28:22170207-22170057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:64-183
               
               
               Cow position:chr28:16450461-16450342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-214
               
               
               Cow position:chr28:27941706-27941561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:67-225
               
               
               Cow position:chr28:23841417-23841563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:69-238
               
               
               Cow position:chr28:31223480-31223310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):132, 35

               
               
               Conread position:70-204
               
               
               Cow position:chr28:9100006-9100139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:70-218
               
               
               Cow position:chr28:18761930-18761785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:70-223
               
               
               Cow position:chr28:16964887-16964731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:80-220
               
               
               Cow position:chr28:3449402-3449534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:82-215
               
               
               Cow position:chr28:13194601-13194468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:84-225
               
               
               Cow position:chr28:3137643-3137786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:85-218
               
               
               Cow position:chr28:10896330-10896464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:108
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):36, 112

               
               
               Conread position:85-220
               
               
               Cow position:chr28:6124167-6124033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:88-216
               
               
               Cow position:chr28:13371043-13370920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:88-218
               
               
               Cow position:chr28:22339469-22339597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:88-219
               
               
               Cow position:chr28:9920072-9919946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:88-224
               
               
               Cow position:chr28:10845198-10845334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):133, 64

               
               
               Conread position:88-234
               
               
               Cow position:chr28:29972282-29972135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:90-228
               
               
               Cow position:chr28:19345577-19345711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:98-204
               
               
               Cow position:chr28:508072-508180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:114-220
               
               
               Cow position:chr28:10528837-10528731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-167
               
               
               Cow position:chr29:24051381-24051210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-198
               
               
               Cow position:chr29:21645318-21645516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 11

               
               
               Conread position:1-204
               
               
               Cow position:chr29:4023004-4023201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:1-204
               
               
               Cow position:chr29:37618307-37618513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-212
               
               
               Cow position:chr29:29057179-29057392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:1-212
               
               
               Cow position:chr29:35258985-35259193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:1-213
               
               
               Cow position:chr29:3711377-3711590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:1-213
               
               
               Cow position:chr29:31221753-31221956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 16

               
               
               Conread position:1-215
               
               
               Cow position:chr29:23697977-23698184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):12, 105

               
               
               Conread position:1-218
               
               
               Cow position:chr29:6517235-6517447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:1-219
               
               
               Cow position:chr29:8634650-8634869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 119

               
               
               Conread position:1-219
               
               
               Cow position:chr29:20087384-20087157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:1-220
               
               
               Cow position:chr29:21196651-21196433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:1-223
               
               
               Cow position:chr29:18878485-18878257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):25, 173

               
               
               Conread position:1-226
               
               
               Cow position:chr29:22533965-22534190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):64, 8

               
               
               Conread position:1-228
               
               
               Cow position:chr29:41530850-41531079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):12, 96

               
               
               Conread position:2-220
               
               
               Cow position:chr29:8629102-8628875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:2-223
               
               
               Cow position:chr29:20256225-20256445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):61, 25

               
               
               Conread position:3-179
               
               
               Cow position:chr29:38581971-38582150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr29:23913395-23913208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:3-194
               
               
               Cow position:chr29:7955992-7955793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:3-197
               
               
               Cow position:chr29:38858215-38858014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):33, 103

               
               
               Conread position:3-199
               
               
               Cow position:chr29:20167422-20167623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 166

               
               
               Conread position:3-201
               
               
               Cow position:chr29:24188067-24187862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):22, 201

               
               
               Conread position:3-212
               
               
               Cow position:chr29:22735450-22735234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):20, 117

               
               
               Conread position:3-214
               
               
               Cow position:chr29:18450138-18449925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:3-214
               
               
               Cow position:chr29:20626565-20626783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):22, 199

               
               
               Conread position:3-214
               
               
               Cow position:chr29:35084224-35084009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:3-219
               
               
               Cow position:chr29:4624998-4624778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 189

               
               
               Conread position:3-220
               
               
               Cow position:chr29:25814838-25814612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr29:31489317-31489544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 211

               
               
               Conread position:3-223
               
               
               Cow position:chr29:22690223-22690450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 201

               
               
               Conread position:3-224
               
               
               Cow position:chr29:30294867-30294646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):63, 23

               
               
               Conread position:3-227
               
               
               Cow position:chr29:21706398-21706169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):23, 88

               
               
               Conread position:3-229
               
               
               Cow position:chr29:17222411-17222645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):23, 154

               
               
               Conread position:4-186
               
               
               Cow position:chr29:21443333-21443154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):62, 161

               
               
               Conread position:4-201
               
               
               Cow position:chr29:2056060-2056262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):22, 131

               
               
               Conread position:4-208
               
               
               Cow position:chr29:685168-684970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):7, 16

               
               
               Conread position:4-212
               
               
               Cow position:chr29:12025468-12025268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):63, 43

               
               
               Conread position:4-214
               
               
               Cow position:chr29:629543-629755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-219
               
               
               Cow position:chr29:396412-396618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:4-230
               
               
               Cow position:chr29:11915826-11916052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:5-199
               
               
               Cow position:chr29:19420613-19420420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 124

               
               
               Conread position:5-204
               
               
               Cow position:chr29:8799008-8798807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:5-213
               
               
               Cow position:chr29:5409141-5408930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):20, 96

               
               
               Conread position:5-219
               
               
               Cow position:chr29:30227275-30227061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):62, 192

               
               
               Conread position:6-201
               
               
               Cow position:chr29:5046658-5046854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):7, 165

               
               
               Conread position:6-223
               
               
               Cow position:chr29:8163828-8163607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):19, 195

               
               
               Conread position:6-223
               
               
               Cow position:chr29:17436752-17436969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 58

               
               
               Conread position:7-186
               
               
               Cow position:chr29:4053336-4053157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:7-204
               
               
               Cow position:chr29:501199-501406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):19, 157

               
               
               Conread position:7-212
               
               
               Cow position:chr29:32656086-32655880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):6, 123

               
               
               Conread position:8-192
               
               
               Cow position:chr29:41422904-41422716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 17

               
               
               Conread position:8-204
               
               
               Cow position:chr29:33321356-33321554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:8-221
               
               
               Cow position:chr29:44684102-44684319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:9-223
               
               
               Cow position:chr29:19949316-19949526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 116

               
               
               Conread position:9-233
               
               
               Cow position:chr29:18748377-18748157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):58, 16

               
               
               Conread position:10-183
               
               
               Cow position:chr29:24365891-24365713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-214
               
               
               Cow position:chr29:8669371-8669571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):173, 15

               
               
               Conread position:10-224
               
               
               Cow position:chr29:30440949-30441165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:11-191
               
               
               Cow position:chr29:1011574-1011401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):56, 14

               
               
               Conread position:11-192
               
               
               Cow position:chr29:29324414-29324228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 55

               
               
               Conread position:12-219
               
               
               Cow position:chr29:8605923-8605718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 137

               
               
               Conread position:16-207
               
               
               Cow position:chr29:19187044-19187234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):49, 13

               
               
               Conread position:16-214
               
               
               Cow position:chr29:34744609-34744415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 50

               
               
               Conread position:16-223
               
               
               Cow position:chr29:4120872-4121078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 9

               
               
               Conread position:16-225
               
               
               Cow position:chr29:31929007-31929212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:17-197
               
               
               Cow position:chr29:36357145-36357326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:19-186
               
               
               Cow position:chr29:13028460-13028637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-199
               
               
               Cow position:chr29:17297156-17297338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-206
               
               
               Cow position:chr29:27042292-27042479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 148

               
               
               Conread position:19-214
               
               
               Cow position:chr29:35292112-35292301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:19-215
               
               
               Cow position:chr29:8979554-8979355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:19-218
               
               
               Cow position:chr29:16657719-16657908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-218
               
               
               Cow position:chr29:32894283-32894476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):46, 96

               
               
               Conread position:19-218
               
               
               Cow position:chr29:34745638-34745442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 58

               
               
               Conread position:19-218
               
               
               Cow position:chr29:42630141-42630336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:19-223
               
               
               Cow position:chr29:33511709-33511501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:20-236
               
               
               Cow position:chr29:24604917-24605131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):45, 108

               
               
               Conread position:24-192
               
               
               Cow position:chr29:30743691-30743517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:24-199
               
               
               Cow position:chr29:10203797-10203969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:24-199
               
               
               Cow position:chr29:11081371-11081194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:24-204
               
               
               Cow position:chr29:3825997-3826171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:24-204
               
               
               Cow position:chr29:11894723-11894905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-204
               
               
               Cow position:chr29:26017477-26017296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):42, 169

               
               
               Conread position:24-207
               
               
               Cow position:chr29:36220559-36220750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):42, 186

               
               
               Conread position:25-164
               
               
               Cow position:chr29:28279261-28279120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-195
               
               
               Cow position:chr29:3292974-3293139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:25-199
               
               
               Cow position:chr29:22652349-22652519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-203
               
               
               Cow position:chr29:26602225-26602403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:25-203
               
               
               Cow position:chr29:26631067-26631252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):41, 179

               
               
               Conread position:25-204
               
               
               Cow position:chr29:16290752-16290928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:25-204
               
               
               Cow position:chr29:27911617-27911796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:25-204
               
               
               Cow position:chr29:27926800-27926978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:25-204
               
               
               Cow position:chr29:31934405-31934583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:25-208
               
               
               Cow position:chr29:22577153-22576969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:25-215
               
               
               Cow position:chr29:15947193-15947386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr29:34359795-34359608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-215
               
               
               Cow position:chr29:35458745-35458553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):41, 21

               
               
               Conread position:25-216
               
               
               Cow position:chr29:35189633-35189826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-218
               
               
               Cow position:chr29:26211078-26211272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:25-219
               
               
               Cow position:chr29:4441178-4440989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):56, 40

               
               
               Conread position:25-220
               
               
               Cow position:chr29:20685195-20685387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:25-220
               
               
               Cow position:chr29:34297542-34297349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:25-221
               
               
               Cow position:chr29:9800676-9800880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:25-223
               
               
               Cow position:chr29:23874486-23874684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-38
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:25-223
               
               
               Cow position:chr29:34675983-34675785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):40, 124

               
               
               Conread position:25-224
               
               
               Cow position:chr29:5520459-5520260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:25-224
               
               
               Cow position:chr29:20243776-20243577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):166, 40

               
               
               Conread position:25-224
               
               
               Cow position:chr29:32799685-32799479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:27-199
               
               
               Cow position:chr29:26540511-26540341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):39, 5

               
               
               Conread position:27-216
               
               
               Cow position:chr29:29183754-29183938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 9

               
               
               Conread position:27-237
               
               
               Cow position:chr29:29265054-29264835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:28-177
               
               
               Cow position:chr29:28257170-28257320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 86

               
               
               Conread position:28-180
               
               
               Cow position:chr29:23825181-23825031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-200
               
               
               Cow position:chr29:14501622-14501796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-203
               
               
               Cow position:chr29:21666116-21666290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:28-203
               
               
               Cow position:chr29:40891672-40891503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr29:3549632-3549810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr29:13558362-13558542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr29:30827435-30827613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-205
               
               
               Cow position:chr29:2744238-2744063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):38, 60

               
               
               Conread position:28-212
               
               
               Cow position:chr29:32656462-32656650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr29:4492465-4492648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:28-214
               
               
               Cow position:chr29:9378666-9378848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-214
               
               
               Cow position:chr29:14576888-14577070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:28-216
               
               
               Cow position:chr29:23844867-23845059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr29:25874442-25874249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr29:363278-363468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 152

               
               
               Conread position:28-218
               
               
               Cow position:chr29:30021148-30021339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 183

               
               
               Conread position:28-218
               
               
               Cow position:chr29:36249066-36249258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 72

               
               
               Conread position:28-219
               
               
               Cow position:chr29:936236-936420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-219
               
               
               Cow position:chr29:14375852-14375658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr29:16609777-16609972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):40, 120

               
               
               Conread position:28-219
               
               
               Cow position:chr29:25793175-25793363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):178, 80

               
               
               Conread position:28-220
               
               
               Cow position:chr29:5830991-5830796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr29:16272771-16272967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr29:18200813-18201005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:28-221
               
               
               Cow position:chr29:27524806-27524610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):38, 154

               
               
               Conread position:28-223
               
               
               Cow position:chr29:21018717-21018518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr29:31658704-31658517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:28-224
               
               
               Cow position:chr29:35677514-35677313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr29:5568519-5568720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-228
               
               
               Cow position:chr29:9709724-9709919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:28-238
               
               
               Cow position:chr29:1933542-1933329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):37, 128

               
               
               Conread position:29-217
               
               
               Cow position:chr29:38732183-38732375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-224
               
               
               Cow position:chr29:20673780-20673582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:32-201
               
               
               Cow position:chr29:25907279-25907454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:32-214
               
               
               Cow position:chr29:28674672-28674486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-221
               
               
               Cow position:chr29:23678742-23678923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):33, 79

               
               
               Conread position:33-204
               
               
               Cow position:chr29:16438745-16438567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):32, 73

               
               
               Conread position:33-226
               
               
               Cow position:chr29:5953825-5953628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:35-192
               
               
               Cow position:chr29:42404983-42405142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr29:37794798-37794969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:35-218
               
               
               Cow position:chr29:16735260-16735449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-219
               
               
               Cow position:chr29:23142298-23142115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):31, 154

               
               
               Conread position:35-220
               
               
               Cow position:chr29:4484132-4484318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 93

               
               
               Conread position:35-224
               
               
               Cow position:chr29:4648173-4647988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 71

               
               
               Conread position:36-203
               
               
               Cow position:chr29:2414715-2414545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr29:28420792-28420962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-206
               
               
               Cow position:chr29:7040835-7040662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 164

               
               
               Conread position:36-207
               
               
               Cow position:chr29:43088345-43088512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:36-212
               
               
               Cow position:chr29:17109994-17110166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:36-215
               
               
               Cow position:chr29:16200441-16200260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-216
               
               
               Cow position:chr29:4070661-4070836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:36-220
               
               
               Cow position:chr29:14746817-14746999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):30, 83

               
               
               Conread position:36-220
               
               
               Cow position:chr29:14828191-14828003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 56

               
               
               Conread position:36-220
               
               
               Cow position:chr29:22019150-22018964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):29, 70

               
               
               Conread position:36-224
               
               
               Cow position:chr29:30089018-30088830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 14

               
               
               Conread position:37-207
               
               
               Cow position:chr29:19363748-19363917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:37-221
               
               
               Cow position:chr29:12680193-12680377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 64

               
               
               Conread position:38-223
               
               
               Cow position:chr29:25432492-25432678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:39-223
               
               
               Cow position:chr29:32713202-32713391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-233
               
               
               Cow position:chr29:22068700-22068506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):26, 49

               
               
               Conread position:40-212
               
               
               Cow position:chr29:25944256-25944082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:40-214
               
               
               Cow position:chr29:31786716-31786887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:40-223
               
               
               Cow position:chr29:11685208-11685394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:41-185
               
               
               Cow position:chr29:30920361-30920214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):25, 118

               
               
               Conread position:44-237
               
               
               Cow position:chr29:18577490-18577674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):7, 85

               
               
               Conread position:48-219
               
               
               Cow position:chr29:20244105-20243937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 68

               
               
               Conread position:50-192
               
               
               Cow position:chr29:23735037-23734893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:50-192
               
               
               Cow position:chr29:23819339-23819191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-204
               
               
               Cow position:chr29:41094168-41094321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):15, 118

               
               
               Conread position:50-218
               
               
               Cow position:chr29:41014616-41014786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):16, 164

               
               
               Conread position:50-220
               
               
               Cow position:chr29:24119449-24119277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:141
               
               
               Alignm E-value:8.00001e-42
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:56-220
               
               
               Cow position:chr29:3584059-3583891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 16

               
               
               Conread position:62-204
               
               
               Cow position:chr29:4741326-4741184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr29:35281529-35281676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 140

               
               
               Conread position:62-204
               
               
               Cow position:chr29:38754872-38754733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr29:44901596-44901457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr29:8841380-8841238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr29:774053-774207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr29:14614972-14614819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr29:20643980-20644137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):36, 113

               
               
               Conread position:62-220
               
               
               Cow position:chr29:22720578-22720425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):150, 57

               
               
               Conread position:62-222
               
               
               Cow position:chr29:28087740-28087896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr29:5740222-5740066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr29:16164371-16164212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:62-226
               
               
               Cow position:chr29:42887034-42887196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:62-229
               
               
               Cow position:chr29:16652221-16652385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-233
               
               
               Cow position:chr29:22447936-22448106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:63-185
               
               
               Cow position:chr29:7143361-7143485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:64-218
               
               
               Cow position:chr29:6515499-6515652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:64-222
               
               
               Cow position:chr29:7285521-7285675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):140, 78

               
               
               Conread position:65-223
               
               
               Cow position:chr29:26777076-26777234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-222
               
               
               Cow position:chr29:34483559-34483403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):9, 125

               
               
               Conread position:67-218
               
               
               Cow position:chr29:23954700-23954851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:67-222
               
               
               Cow position:chr29:29363669-29363824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-225
               
               
               Cow position:chr29:31835347-31835493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):148, 42

               
               
               Conread position:74-217
               
               
               Cow position:chr29:44937922-44937778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):58, 131

               
               
               Conread position:75-184
               
               
               Cow position:chr29:5218005-5217895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:75-185
               
               
               Cow position:chr29:35663841-35663730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:88
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:75-220
               
               
               Cow position:chr29:6337728-6337871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:81-223
               
               
               Cow position:chr29:20605063-20604924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:85-214
               
               
               Cow position:chr29:6716426-6716300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:85-216
               
               
               Cow position:chr29:36080128-36080257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:85-220
               
               
               Cow position:chr29:23209414-23209552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:86-199
               
               
               Cow position:chr29:7452330-7452441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:95
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:88-204
               
               
               Cow position:chr29:34832307-34832189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:95
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 111

               
               
               Conread position:89-204
               
               
               Cow position:chr29:41844160-41844046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:100-216
               
               
               Cow position:chr29:25975429-25975312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:111-219
               
               
               Cow position:chr29:28733997-28733890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:112-221
               
               
               Cow position:chr29:28616833-28616942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr3:7566439-7566259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:1-189
               
               
               Cow position:chr3:9026106-9025915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):19, 10

               
               
               Conread position:1-192
               
               
               Cow position:chr3:14546980-14547169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):12, 77

               
               
               Conread position:1-192
               
               
               Cow position:chr3:81234367-81234558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-195
               
               
               Cow position:chr3:30463193-30463003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 81

               
               
               Conread position:1-199
               
               
               Cow position:chr3:54434955-54435145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:1-203
               
               
               Cow position:chr3:28902781-28902583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):12, 101

               
               
               Conread position:1-204
               
               
               Cow position:chr3:78071814-78071611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):19, 117

               
               
               Conread position:1-207
               
               
               Cow position:chr3:47199153-47198941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):25, 150

               
               
               Conread position:1-214
               
               
               Cow position:chr3:11229387-11229178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:1-215
               
               
               Cow position:chr3:15160498-15160706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-219
               
               
               Cow position:chr3:45314322-45314549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-221
               
               
               Cow position:chr3:53910087-53910300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 123

               
               
               Conread position:1-222
               
               
               Cow position:chr3:18059680-18059905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 118

               
               
               Conread position:1-223
               
               
               Cow position:chr3:71238132-71238350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 52

               
               
               Conread position:1-223
               
               
               Cow position:chr3:83491064-83491283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):11, 27

               
               
               Conread position:1-224
               
               
               Cow position:chr3:1830599-1830373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 191

               
               
               Conread position:2-200
               
               
               Cow position:chr3:45183858-45183643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:2-203
               
               
               Cow position:chr3:59681925-59681727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):11, 117

               
               
               Conread position:2-214
               
               
               Cow position:chr3:18686885-18687092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):15, 52

               
               
               Conread position:2-224
               
               
               Cow position:chr3:51329256-51329027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr3:40145440-40145630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-198
               
               
               Cow position:chr3:15973542-15973744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):23, 196

               
               
               Conread position:3-199
               
               
               Cow position:chr3:54067773-54067971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):28, 16

               
               
               Conread position:3-199
               
               
               Cow position:chr3:59702147-59702351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:3-200
               
               
               Cow position:chr3:7860277-7860072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-203
               
               
               Cow position:chr3:1011462-1011673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:3-203
               
               
               Cow position:chr3:29891433-29891223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr3:985992-986197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:3-204
               
               
               Cow position:chr3:5703154-5703357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:3-204
               
               
               Cow position:chr3:13882545-13882337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:3-204
               
               
               Cow position:chr3:72342221-72342430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-208
               
               
               Cow position:chr3:8181975-8181765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 44

               
               
               Conread position:3-211
               
               
               Cow position:chr3:59271811-59272020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:3-212
               
               
               Cow position:chr3:16107381-16107186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):61, 23

               
               
               Conread position:3-213
               
               
               Cow position:chr3:10841788-10842005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 199

               
               
               Conread position:3-213
               
               
               Cow position:chr3:23920453-23920235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-214
               
               
               Cow position:chr3:4071787-4071578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-215
               
               
               Cow position:chr3:42589085-42589295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:3-216
               
               
               Cow position:chr3:66631376-66631150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 162

               
               
               Conread position:3-217
               
               
               Cow position:chr3:55970483-55970708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:3-218
               
               
               Cow position:chr3:55248564-55248784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 197

               
               
               Conread position:3-219
               
               
               Cow position:chr3:4120390-4120175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:3-221
               
               
               Cow position:chr3:57577673-57577889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 86

               
               
               Conread position:3-222
               
               
               Cow position:chr3:80733877-80733648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr3:27286496-27286714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:3-223
               
               
               Cow position:chr3:51033342-51033572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):22, 172

               
               
               Conread position:3-226
               
               
               Cow position:chr3:31309378-31309148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:174
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:3-226
               
               
               Cow position:chr3:53318377-53318610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):22, 90

               
               
               Conread position:4-185
               
               
               Cow position:chr3:53046682-53046495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:4-185
               
               
               Cow position:chr3:74787407-74787588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:4-186
               
               
               Cow position:chr3:62312779-62312962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-186
               
               
               Cow position:chr3:62370038-62370221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-189
               
               
               Cow position:chr3:18326847-18326658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:4-192
               
               
               Cow position:chr3:60597521-60597707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:4-194
               
               
               Cow position:chr3:13380294-13380106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:4-199
               
               
               Cow position:chr3:23037526-23037331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 95

               
               
               Conread position:4-199
               
               
               Cow position:chr3:28897042-28896844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:4-201
               
               
               Cow position:chr3:22889034-22888835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 21

               
               
               Conread position:4-203
               
               
               Cow position:chr3:2392985-2392788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):54, 20

               
               
               Conread position:4-204
               
               
               Cow position:chr3:3985304-3985497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:4-204
               
               
               Cow position:chr3:11027257-11027459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:4-204
               
               
               Cow position:chr3:21867061-21866856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 144

               
               
               Conread position:4-204
               
               
               Cow position:chr3:39812028-39812242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):19, 175

               
               
               Conread position:4-207
               
               
               Cow position:chr3:23804493-23804687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:4-207
               
               
               Cow position:chr3:61024042-61023838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):9, 188

               
               
               Conread position:4-208
               
               
               Cow position:chr3:48241595-48241792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):17, 105

               
               
               Conread position:4-209
               
               
               Cow position:chr3:48900355-48900142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-212
               
               
               Cow position:chr3:6728347-6728130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:4-215
               
               
               Cow position:chr3:23203254-23203034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):17, 71

               
               
               Conread position:4-217
               
               
               Cow position:chr3:19711361-19711143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 184

               
               
               Conread position:4-218
               
               
               Cow position:chr3:2025177-2025398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):9, 205

               
               
               Conread position:4-218
               
               
               Cow position:chr3:3032386-3032605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):21, 127

               
               
               Conread position:4-218
               
               
               Cow position:chr3:3656491-3656712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:4-218
               
               
               Cow position:chr3:16710816-16710604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):143, 8

               
               
               Conread position:4-219
               
               
               Cow position:chr3:68587006-68587214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):67, 31

               
               
               Conread position:4-219
               
               
               Cow position:chr3:76056308-76056093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):22, 123

               
               
               Conread position:4-220
               
               
               Cow position:chr3:13241093-13240877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:4-220
               
               
               Cow position:chr3:38828736-38828949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:4-220
               
               
               Cow position:chr3:81087659-81087440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 25

               
               
               Conread position:4-221
               
               
               Cow position:chr3:52652104-52651879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:4-222
               
               
               Cow position:chr3:27976547-27976328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):19, 124

               
               
               Conread position:4-223
               
               
               Cow position:chr3:18831400-18831618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):11, 121

               
               
               Conread position:4-223
               
               
               Cow position:chr3:77582086-77582307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:4-224
               
               
               Cow position:chr3:44534554-44534330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):22, 37

               
               
               Conread position:4-225
               
               
               Cow position:chr3:20802643-20802443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-225
               
               
               Cow position:chr3:83934706-83934927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):13, 112

               
               
               Conread position:4-229
               
               
               Cow position:chr3:41863608-41863827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-233
               
               
               Cow position:chr3:75966804-75966572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:5-192
               
               
               Cow position:chr3:10668901-10668709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:5-199
               
               
               Cow position:chr3:7661834-7662033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):17, 195

               
               
               Conread position:5-200
               
               
               Cow position:chr3:51578339-51578146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):8, 62

               
               
               Conread position:5-204
               
               
               Cow position:chr3:34871545-34871748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):21, 194

               
               
               Conread position:5-208
               
               
               Cow position:chr3:74127525-74127314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:5-226
               
               
               Cow position:chr3:56949104-56948892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:5-238
               
               
               Cow position:chr3:79893514-79893281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):60, 107

               
               
               Conread position:6-186
               
               
               Cow position:chr3:82366106-82366293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:6-188
               
               
               Cow position:chr3:59828410-59828222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 14

               
               
               Conread position:6-203
               
               
               Cow position:chr3:71497155-71496948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-204
               
               
               Cow position:chr3:4271355-4271547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):7, 117

               
               
               Conread position:6-211
               
               
               Cow position:chr3:3889584-3889389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:6-213
               
               
               Cow position:chr3:15443747-15443535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:167
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:6-213
               
               
               Cow position:chr3:35074861-35075060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):6, 102

               
               
               Conread position:6-213
               
               
               Cow position:chr3:68289659-68289872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):20, 195

               
               
               Conread position:6-214
               
               
               Cow position:chr3:32376797-32377005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):8, 128

               
               
               Conread position:6-220
               
               
               Cow position:chr3:68648160-68648369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 10

               
               
               Conread position:6-231
               
               
               Cow position:chr3:84137832-84137599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):14, 8

               
               
               Conread position:8-214
               
               
               Cow position:chr3:80023328-80023122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 142

               
               
               Conread position:8-225
               
               
               Cow position:chr3:33460623-33460395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:9-214
               
               
               Cow position:chr3:38331627-38331420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 10

               
               
               Conread position:10-186
               
               
               Cow position:chr3:8974834-8975011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:10-186
               
               
               Cow position:chr3:59000769-59000599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 42

               
               
               Conread position:10-201
               
               
               Cow position:chr3:58101662-58101853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:10-204
               
               
               Cow position:chr3:24468398-24468200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):17, 157

               
               
               Conread position:10-212
               
               
               Cow position:chr3:2648527-2648318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):16, 102

               
               
               Conread position:10-223
               
               
               Cow position:chr3:53270815-53271032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):5, 186

               
               
               Conread position:11-204
               
               
               Cow position:chr3:18067125-18067312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):54, 14

               
               
               Conread position:12-199
               
               
               Cow position:chr3:75050632-75050441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):13, 44

               
               
               Conread position:12-199
               
               
               Cow position:chr3:77171300-77171495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:12-205
               
               
               Cow position:chr3:3262842-3262642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:14-204
               
               
               Cow position:chr3:80958522-80958329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):17, 40

               
               
               Conread position:14-214
               
               
               Cow position:chr3:24220585-24220389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:14-217
               
               
               Cow position:chr3:51153037-51153236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 77

               
               
               Conread position:16-184
               
               
               Cow position:chr3:6579484-6579642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:17-186
               
               
               Cow position:chr3:23753487-23753648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:17-205
               
               
               Cow position:chr3:60186140-60186336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):6, 33

               
               
               Conread position:17-223
               
               
               Cow position:chr3:11607818-11608018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:19-183
               
               
               Cow position:chr3:70334697-70334531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-191
               
               
               Cow position:chr3:70756644-70756470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-199
               
               
               Cow position:chr3:54905612-54905783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 87

               
               
               Conread position:19-201
               
               
               Cow position:chr3:80172997-80173177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 86

               
               
               Conread position:19-203
               
               
               Cow position:chr3:7763654-7763838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:19-204
               
               
               Cow position:chr3:4518185-4518000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:19-204
               
               
               Cow position:chr3:29946385-29946568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):47, 81

               
               
               Conread position:19-204
               
               
               Cow position:chr3:75853330-75853153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):43, 68

               
               
               Conread position:19-204
               
               
               Cow position:chr3:83215260-83215451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-213
               
               
               Cow position:chr3:17134332-17134520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:19-213
               
               
               Cow position:chr3:49996723-49996525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-214
               
               
               Cow position:chr3:12090671-12090868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:19-218
               
               
               Cow position:chr3:2675027-2675231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-219
               
               
               Cow position:chr3:18700113-18699911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-219
               
               
               Cow position:chr3:53875767-53875570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 170

               
               
               Conread position:19-219
               
               
               Cow position:chr3:58614454-58614661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-219
               
               
               Cow position:chr3:59588636-59588840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):45, 182

               
               
               Conread position:19-219
               
               
               Cow position:chr3:65237022-65237218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 97

               
               
               Conread position:19-220
               
               
               Cow position:chr3:46271791-46271587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):48, 80

               
               
               Conread position:19-223
               
               
               Cow position:chr3:4268578-4268377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-223
               
               
               Cow position:chr3:9663174-9662971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):46, 176

               
               
               Conread position:19-223
               
               
               Cow position:chr3:59604840-59605040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 106

               
               
               Conread position:19-224
               
               
               Cow position:chr3:53428919-53428716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):48, 105

               
               
               Conread position:19-225
               
               
               Cow position:chr3:9120839-9121047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):12, 147

               
               
               Conread position:19-227
               
               
               Cow position:chr3:60370980-60371183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):32, 28

               
               
               Conread position:20-215
               
               
               Cow position:chr3:30180086-30180276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 5

               
               
               Conread position:24-188
               
               
               Cow position:chr3:75238460-75238626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:24-204
               
               
               Cow position:chr3:75871481-75871663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:24-208
               
               
               Cow position:chr3:25702339-25702145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-212
               
               
               Cow position:chr3:71231399-71231587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:24-220
               
               
               Cow position:chr3:69144696-69144902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-221
               
               
               Cow position:chr3:29413063-29413278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):43, 191

               
               
               Conread position:24-233
               
               
               Cow position:chr3:17039615-17039832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:25-159
               
               
               Cow position:chr3:25060331-25060466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 111

               
               
               Conread position:25-182
               
               
               Cow position:chr3:28884157-28884002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 52

               
               
               Conread position:25-183
               
               
               Cow position:chr3:83199515-83199674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:25-185
               
               
               Cow position:chr3:1028644-1028484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:25-185
               
               
               Cow position:chr3:66900729-66900564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 155

               
               
               Conread position:25-186
               
               
               Cow position:chr3:16333801-16333968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-191
               
               
               Cow position:chr3:45881902-45882068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-192
               
               
               Cow position:chr3:63860607-63860440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 11

               
               
               Conread position:25-192
               
               
               Cow position:chr3:70431434-70431604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-195
               
               
               Cow position:chr3:21014954-21014783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 139

               
               
               Conread position:25-197
               
               
               Cow position:chr3:44207874-44207702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr3:46559711-46559539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:25-199
               
               
               Cow position:chr3:63844941-63845117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr3:74644561-74644737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-200
               
               
               Cow position:chr3:37041423-37041592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:25-200
               
               
               Cow position:chr3:67942532-67942355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr3:2637930-2638111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 175

               
               
               Conread position:25-201
               
               
               Cow position:chr3:33252885-33252714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 104

               
               
               Conread position:25-201
               
               
               Cow position:chr3:45667342-45667164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:25-201
               
               
               Cow position:chr3:48483182-48483356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:25-201
               
               
               Cow position:chr3:68303318-68303495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):40, 168

               
               
               Conread position:25-202
               
               
               Cow position:chr3:11281770-11281948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-202
               
               
               Cow position:chr3:73395120-73395294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:25-203
               
               
               Cow position:chr3:21694228-21694407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:25-204
               
               
               Cow position:chr3:5044809-5044628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr3:8814109-8813924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):41, 166

               
               
               Conread position:25-204
               
               
               Cow position:chr3:15859375-15859200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:25-204
               
               
               Cow position:chr3:59947669-59947849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr3:62186155-62186339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 175

               
               
               Conread position:25-206
               
               
               Cow position:chr3:15153695-15153872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):41, 101

               
               
               Conread position:25-207
               
               
               Cow position:chr3:41366706-41366515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-207
               
               
               Cow position:chr3:58010825-58010649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):42, 23

               
               
               Conread position:25-207
               
               
               Cow position:chr3:63069362-63069175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-208
               
               
               Cow position:chr3:79884482-79884294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-210
               
               
               Cow position:chr3:55730465-55730279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-210
               
               
               Cow position:chr3:76267971-76267786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:25-211
               
               
               Cow position:chr3:19900662-19900844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):126, 40

               
               
               Conread position:25-212
               
               
               Cow position:chr3:64800546-64800359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:25-213
               
               
               Cow position:chr3:32248015-32248205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr3:3556549-3556741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr3:20841869-20841687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:25-214
               
               
               Cow position:chr3:43389124-43388934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-214
               
               
               Cow position:chr3:45211305-45211496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr3:46792389-46792575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:25-214
               
               
               Cow position:chr3:72027641-72027829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-214
               
               
               Cow position:chr3:80910599-80910789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:25-217
               
               
               Cow position:chr3:26338016-26337822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:25-217
               
               
               Cow position:chr3:37851500-37851691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:25-217
               
               
               Cow position:chr3:44959946-44960140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-217
               
               
               Cow position:chr3:54350437-54350243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:25-217
               
               
               Cow position:chr3:78258751-78258556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):40, 175

               
               
               Conread position:25-217
               
               
               Cow position:chr3:79271707-79271514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:25-218
               
               
               Cow position:chr3:36375536-36375342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):40, 104

               
               
               Conread position:25-218
               
               
               Cow position:chr3:51609182-51608988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-218
               
               
               Cow position:chr3:54903568-54903762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:25-218
               
               
               Cow position:chr3:76300774-76300968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):7, 179

               
               
               Conread position:25-218
               
               
               Cow position:chr3:84807324-84807129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:25-219
               
               
               Cow position:chr3:19792909-19793093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-219
               
               
               Cow position:chr3:56678345-56678148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:25-219
               
               
               Cow position:chr3:73525234-73525038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr3:210323-210520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr3:3164106-3163918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:25-220
               
               
               Cow position:chr3:19044762-19044575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:25-222
               
               
               Cow position:chr3:1517508-1517311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:25-222
               
               
               Cow position:chr3:59317706-59317900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:25-223
               
               
               Cow position:chr3:29334410-29334210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):40, 165

               
               
               Conread position:25-223
               
               
               Cow position:chr3:55094226-55094030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:25-223
               
               
               Cow position:chr3:55712444-55712631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:25-223
               
               
               Cow position:chr3:70402648-70402838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:25-223
               
               
               Cow position:chr3:72473919-72474124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:25-224
               
               
               Cow position:chr3:635181-635378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-224
               
               
               Cow position:chr3:46259714-46259914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 79

               
               
               Conread position:25-233
               
               
               Cow position:chr3:65058702-65058906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:27-198
               
               
               Cow position:chr3:77098817-77098648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 90

               
               
               Conread position:27-208
               
               
               Cow position:chr3:29234675-29234492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 147

               
               
               Conread position:27-213
               
               
               Cow position:chr3:12178063-12178250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:27-224
               
               
               Cow position:chr3:59649264-59649457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 79

               
               
               Conread position:27-236
               
               
               Cow position:chr3:47417566-47417353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 83

               
               
               Conread position:28-183
               
               
               Cow position:chr3:5003640-5003793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:28-185
               
               
               Cow position:chr3:654075-653916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-186
               
               
               Cow position:chr3:72255412-72255254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 48

               
               
               Conread position:28-189
               
               
               Cow position:chr3:11640740-11640904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-195
               
               
               Cow position:chr3:59035047-59035216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-197
               
               
               Cow position:chr3:59610711-59610544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:28-201
               
               
               Cow position:chr3:23132162-23131990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):37, 98

               
               
               Conread position:28-203
               
               
               Cow position:chr3:17105675-17105850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:28-203
               
               
               Cow position:chr3:84174308-84174485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr3:8871724-8871901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):36, 20

               
               
               Conread position:28-204
               
               
               Cow position:chr3:11254161-11253983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr3:23877010-23877181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr3:53266484-53266660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:28-204
               
               
               Cow position:chr3:53592682-53592504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr3:54100719-54100530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr3:64910089-64909913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:28-204
               
               
               Cow position:chr3:76269899-76270068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:28-207
               
               
               Cow position:chr3:15795226-15795407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-207
               
               
               Cow position:chr3:52845563-52845739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-212
               
               
               Cow position:chr3:54506714-54506896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-214
               
               
               Cow position:chr3:24516204-24516013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr3:48468180-48468369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr3:48851963-48851774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr3:83770738-83770929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr3:18144111-18143913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 150

               
               
               Conread position:28-218
               
               
               Cow position:chr3:19611345-19611159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-219
               
               
               Cow position:chr3:45743913-45744108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:28-219
               
               
               Cow position:chr3:49482709-49482516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 136

               
               
               Conread position:28-219
               
               
               Cow position:chr3:58134679-58134487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-219
               
               
               Cow position:chr3:75183315-75183514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 146

               
               
               Conread position:28-220
               
               
               Cow position:chr3:14801751-14801944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):36, 140

               
               
               Conread position:28-220
               
               
               Cow position:chr3:30008901-30008708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 118

               
               
               Conread position:28-220
               
               
               Cow position:chr3:32787467-32787660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:28-220
               
               
               Cow position:chr3:41129718-41129915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr3:64196833-64197023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-220
               
               
               Cow position:chr3:80709860-80709668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 158

               
               
               Conread position:28-222
               
               
               Cow position:chr3:26992577-26992773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-222
               
               
               Cow position:chr3:31298156-31297957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 194

               
               
               Conread position:28-223
               
               
               Cow position:chr3:188879-189072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:28-223
               
               
               Cow position:chr3:15672147-15671951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):174, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr3:32317824-32317628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-223
               
               
               Cow position:chr3:42796513-42796318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:28-223
               
               
               Cow position:chr3:52487621-52487832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr3:67966485-67966290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):38, 23

               
               
               Conread position:28-224
               
               
               Cow position:chr3:8147519-8147320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:28-224
               
               
               Cow position:chr3:15954078-15953881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 183

               
               
               Conread position:28-224
               
               
               Cow position:chr3:18248959-18249158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr3:54050024-54049827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:28-224
               
               
               Cow position:chr3:79730523-79730722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr3:13301843-13301646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:28-225
               
               
               Cow position:chr3:55318890-55318694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):37, 64

               
               
               Conread position:28-227
               
               
               Cow position:chr3:78067149-78066948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):41, 184

               
               
               Conread position:28-231
               
               
               Cow position:chr3:83889253-83889457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 197

               
               
               Conread position:28-233
               
               
               Cow position:chr3:65308447-65308238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:28-237
               
               
               Cow position:chr3:17694998-17694786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):38, 208

               
               
               Conread position:29-199
               
               
               Cow position:chr3:20911402-20911234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 136

               
               
               Conread position:29-199
               
               
               Cow position:chr3:65969176-65969351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):20, 7

               
               
               Conread position:29-202
               
               
               Cow position:chr3:37641334-37641506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:29-205
               
               
               Cow position:chr3:57274067-57274241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 89

               
               
               Conread position:29-207
               
               
               Cow position:chr3:2506470-2506294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):36, 166

               
               
               Conread position:29-212
               
               
               Cow position:chr3:68156730-68156918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):22, 137

               
               
               Conread position:29-214
               
               
               Cow position:chr3:35624537-35624350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):39, 61

               
               
               Conread position:29-214
               
               
               Cow position:chr3:58452055-58452237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):34, 50

               
               
               Conread position:29-219
               
               
               Cow position:chr3:12705535-12705349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 62

               
               
               Conread position:29-220
               
               
               Cow position:chr3:81616445-81616252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:29-223
               
               
               Cow position:chr3:49733045-49732847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):36, 54

               
               
               Conread position:29-223
               
               
               Cow position:chr3:82195494-82195684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:29-226
               
               
               Cow position:chr3:49363117-49363312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:32-192
               
               
               Cow position:chr3:74515327-74515166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):33, 98

               
               
               Conread position:32-197
               
               
               Cow position:chr3:25735895-25735728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:32-200
               
               
               Cow position:chr3:55106138-55105968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:32-207
               
               
               Cow position:chr3:57754465-57754291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 98

               
               
               Conread position:32-214
               
               
               Cow position:chr3:14211972-14211792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:35-186
               
               
               Cow position:chr3:4931827-4931666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-201
               
               
               Cow position:chr3:3453593-3453761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-201
               
               
               Cow position:chr3:61680331-61680495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:35-201
               
               
               Cow position:chr3:62789941-62789771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr3:18479284-18479115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):30, 37

               
               
               Conread position:35-204
               
               
               Cow position:chr3:70333951-70333787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):30, 46

               
               
               Conread position:35-222
               
               
               Cow position:chr3:51150142-51150329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):30, 136

               
               
               Conread position:35-226
               
               
               Cow position:chr3:22734244-22734058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 71

               
               
               Conread position:36-201
               
               
               Cow position:chr3:56754518-56754356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:36-203
               
               
               Cow position:chr3:16752244-16752073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-207
               
               
               Cow position:chr3:62998977-62998810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):27, 62

               
               
               Conread position:36-208
               
               
               Cow position:chr3:49787573-49787742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):22, 83

               
               
               Conread position:36-214
               
               
               Cow position:chr3:7381818-7381640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 110

               
               
               Conread position:36-214
               
               
               Cow position:chr3:44594636-44594814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):30, 153

               
               
               Conread position:36-216
               
               
               Cow position:chr3:63201934-63202117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:36-218
               
               
               Cow position:chr3:40213019-40212840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):30, 77

               
               
               Conread position:36-218
               
               
               Cow position:chr3:82175522-82175704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:36-219
               
               
               Cow position:chr3:22165401-22165220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:36-220
               
               
               Cow position:chr3:19641072-19641261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):7, 165

               
               
               Conread position:36-220
               
               
               Cow position:chr3:68624232-68624418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):30, 92

               
               
               Conread position:36-222
               
               
               Cow position:chr3:35079493-35079305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:36-222
               
               
               Cow position:chr3:59699636-59699450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):22, 64

               
               
               Conread position:36-223
               
               
               Cow position:chr3:65022309-65022505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-224
               
               
               Cow position:chr3:39661442-39661249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-224
               
               
               Cow position:chr3:79398157-79398347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-225
               
               
               Cow position:chr3:66885015-66884830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 73

               
               
               Conread position:36-229
               
               
               Cow position:chr3:79813625-79813826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:37-214
               
               
               Cow position:chr3:58929519-58929340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:37-216
               
               
               Cow position:chr3:48537378-48537562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:37-216
               
               
               Cow position:chr3:70676245-70676424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:38-201
               
               
               Cow position:chr3:2636913-2636756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-204
               
               
               Cow position:chr3:53604728-53604562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:39-213
               
               
               Cow position:chr3:19199004-19199180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):27, 38

               
               
               Conread position:39-214
               
               
               Cow position:chr3:5707195-5707016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:39-216
               
               
               Cow position:chr3:83705520-83705341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:39-218
               
               
               Cow position:chr3:2016453-2016625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):26, 87

               
               
               Conread position:40-160
               
               
               Cow position:chr3:38783625-38783746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:40-204
               
               
               Cow position:chr3:27368650-27368482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-204
               
               
               Cow position:chr3:58527401-58527558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:40-212
               
               
               Cow position:chr3:38248671-38248845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:40-219
               
               
               Cow position:chr3:6265804-6265987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):23, 160

               
               
               Conread position:40-223
               
               
               Cow position:chr3:23735069-23734889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 70

               
               
               Conread position:40-224
               
               
               Cow position:chr3:42434311-42434128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):25, 110

               
               
               Conread position:40-225
               
               
               Cow position:chr3:621453-621648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:41-214
               
               
               Cow position:chr3:43016431-43016250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 156

               
               
               Conread position:42-185
               
               
               Cow position:chr3:19793569-19793427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 72

               
               
               Conread position:42-192
               
               
               Cow position:chr3:31361446-31361593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:42-208
               
               
               Cow position:chr3:22899712-22899545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 70

               
               
               Conread position:42-214
               
               
               Cow position:chr3:22078096-22078270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:43-204
               
               
               Cow position:chr3:48566670-48566507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:44-207
               
               
               Cow position:chr3:55947620-55947784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):20, 67

               
               
               Conread position:50-181
               
               
               Cow position:chr3:6547452-6547585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-204
               
               
               Cow position:chr3:70925110-70925266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:50-217
               
               
               Cow position:chr3:12621349-12621178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-219
               
               
               Cow position:chr3:76168603-76168436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:53-213
               
               
               Cow position:chr3:8523122-8522965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):14, 38

               
               
               Conread position:53-219
               
               
               Cow position:chr3:73410318-73410479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:54-184
               
               
               Cow position:chr3:14589199-14589068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:54-213
               
               
               Cow position:chr3:76172656-76172492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):50, 148

               
               
               Conread position:54-224
               
               
               Cow position:chr3:31554963-31555136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:56-217
               
               
               Cow position:chr3:18301536-18301376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):9, 142

               
               
               Conread position:58-216
               
               
               Cow position:chr3:67407329-67407175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):9, 66

               
               
               Conread position:59-211
               
               
               Cow position:chr3:52499158-52499007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:61-224
               
               
               Cow position:chr3:36412044-36411880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 112

               
               
               Conread position:61-234
               
               
               Cow position:chr3:59392086-59391912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:62-186
               
               
               Cow position:chr3:72291275-72291398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:96
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr3:18764144-18764283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 135

               
               
               Conread position:62-203
               
               
               Cow position:chr3:31793841-31793702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr3:29943899-29944042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr3:44218808-44218950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr3:58497700-58497842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr3:59885581-59885713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr3:17304928-17304786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):59, 35

               
               
               Conread position:62-207
               
               
               Cow position:chr3:72626703-72626558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:62-208
               
               
               Cow position:chr3:78115550-78115404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-211
               
               
               Cow position:chr3:51543477-51543627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):53, 136

               
               
               Conread position:62-212
               
               
               Cow position:chr3:14725357-14725505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr3:55973035-55972892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 70

               
               
               Conread position:62-213
               
               
               Cow position:chr3:20888620-20888469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):142, 14

               
               
               Conread position:62-213
               
               
               Cow position:chr3:30266653-30266505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr3:6049246-6049096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):95, 42

               
               
               Conread position:62-218
               
               
               Cow position:chr3:57553850-57553702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr3:58558322-58558477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr3:42483971-42484120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr3:62435103-62434939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr3:64277915-64277760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr3:5823500-5823356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr3:7408478-7408636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr3:27083000-27082844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr3:69849250-69849102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr3:31077683-31077527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):153, 40

               
               
               Conread position:62-223
               
               
               Cow position:chr3:2257921-2258083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):144, 40

               
               
               Conread position:62-223
               
               
               Cow position:chr3:53591454-53591294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr3:53836664-53836509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:62-224
               
               
               Cow position:chr3:20066107-20065944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr3:34392178-34392026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:62-235
               
               
               Cow position:chr3:13927858-13928031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):151, 134

               
               
               Conread position:63-204
               
               
               Cow position:chr3:39969818-39969681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):25, 31

               
               
               Conread position:63-218
               
               
               Cow position:chr3:27274572-27274720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:63-223
               
               
               Cow position:chr3:57704377-57704531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:64-211
               
               
               Cow position:chr3:76138502-76138648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:64-214
               
               
               Cow position:chr3:5696690-5696539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):58, 86

               
               
               Conread position:64-217
               
               
               Cow position:chr3:15813118-15812965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):151, 132

               
               
               Conread position:64-219
               
               
               Cow position:chr3:44720541-44720692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:65-233
               
               
               Cow position:chr3:79316734-79316903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-34
               
               
               Alignm gaps (pig, cow):60, 118

               
               
               Conread position:65-236
               
               
               Cow position:chr3:19811302-19811478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:66-222
               
               
               Cow position:chr3:36669124-36668969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 44

               
               
               Conread position:66-224
               
               
               Cow position:chr3:42355711-42355867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):136, 100

               
               
               Conread position:66-226
               
               
               Cow position:chr3:70632191-70632353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:67-204
               
               
               Cow position:chr3:58562746-58562882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):28, 37

               
               
               Conread position:67-219
               
               
               Cow position:chr3:66563828-66563982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 128

               
               
               Conread position:67-223
               
               
               Cow position:chr3:42933528-42933684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:132
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-221
               
               
               Cow position:chr3:79877075-79877229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:68-223
               
               
               Cow position:chr3:14000502-14000357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:69-223
               
               
               Cow position:chr3:15861265-15861110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:71-223
               
               
               Cow position:chr3:23733420-23733268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:74-214
               
               
               Cow position:chr3:70655340-70655195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 123

               
               
               Conread position:75-192
               
               
               Cow position:chr3:84601704-84601587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-206
               
               
               Cow position:chr3:72649935-72649802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:75-220
               
               
               Cow position:chr3:41746450-41746304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 104

               
               
               Conread position:77-205
               
               
               Cow position:chr3:44415516-44415388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-223
               
               
               Cow position:chr3:18177327-18177472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:80-228
               
               
               Cow position:chr3:2434677-2434532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):146, 34

               
               
               Conread position:80-234
               
               
               Cow position:chr3:4274863-4275018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:81-201
               
               
               Cow position:chr3:15781044-15780925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:81-223
               
               
               Cow position:chr3:17952654-17952794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):115, 85

               
               
               Conread position:82-218
               
               
               Cow position:chr3:75975019-75974884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:82-223
               
               
               Cow position:chr3:79824858-79824719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:83-208
               
               
               Cow position:chr3:14558821-14558946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-192
               
               
               Cow position:chr3:52147378-52147271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):46, 61

               
               
               Conread position:85-233
               
               
               Cow position:chr3:8999984-9000132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:88-216
               
               
               Cow position:chr3:59997819-59997947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):25, 99

               
               
               Conread position:88-220
               
               
               Cow position:chr3:26373966-26373837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):30, 16

               
               
               Conread position:88-223
               
               
               Cow position:chr3:33442-33310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 107

               
               
               Conread position:88-226
               
               
               Cow position:chr3:59926698-59926835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:91-194
               
               
               Cow position:chr3:81277109-81277003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:91-207
               
               
               Cow position:chr3:56023093-56023208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:93-204
               
               
               Cow position:chr3:29385940-29386050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:97-204
               
               
               Cow position:chr3:10453919-10454026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:99-223
               
               
               Cow position:chr3:52635798-52635918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:101-221
               
               
               Cow position:chr3:28096786-28096665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:104-223
               
               
               Cow position:chr3:51012364-51012245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-165
               
               
               Cow position:chr4:45862412-45862572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:1-204
               
               
               Cow position:chr4:13918976-13919177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):62, 12

               
               
               Conread position:1-212
               
               
               Cow position:chr4:19496489-19496704 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:1-214
               
               
               Cow position:chr4:10999720-10999500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-214
               
               
               Cow position:chr4:47284022-47283804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 169

               
               
               Conread position:1-218
               
               
               Cow position:chr4:19539242-19539020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 185

               
               
               Conread position:1-224
               
               
               Cow position:chr4:47231007-47230783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 169

               
               
               Conread position:1-225
               
               
               Cow position:chr4:47038762-47038985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):12, 134

               
               
               Conread position:1-225
               
               
               Cow position:chr4:63078217-63078447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:2-216
               
               
               Cow position:chr4:14020496-14020709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:2-216
               
               
               Cow position:chr4:18756430-18756647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 10

               
               
               Conread position:3-184
               
               
               Cow position:chr4:51192960-51193154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr4:43740527-43740713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:3-191
               
               
               Cow position:chr4:46383377-46383180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-192
               
               
               Cow position:chr4:8770095-8770280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:3-192
               
               
               Cow position:chr4:22713500-22713309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 125

               
               
               Conread position:3-201
               
               
               Cow position:chr4:45249963-45250167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 168

               
               
               Conread position:3-204
               
               
               Cow position:chr4:13326958-13326755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 141

               
               
               Conread position:3-204
               
               
               Cow position:chr4:13668629-13668420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr4:19573277-19573487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr4:22073327-22073119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr4:43894820-43894613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:3-204
               
               
               Cow position:chr4:65549037-65548834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 144

               
               
               Conread position:3-212
               
               
               Cow position:chr4:51986586-51986370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 199

               
               
               Conread position:3-212
               
               
               Cow position:chr4:68076538-68076334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:3-213
               
               
               Cow position:chr4:27521546-27521767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 54

               
               
               Conread position:3-213
               
               
               Cow position:chr4:56591035-56591250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 38

               
               
               Conread position:3-214
               
               
               Cow position:chr4:45213197-45212978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):24, 98

               
               
               Conread position:3-214
               
               
               Cow position:chr4:56852847-56853059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):21, 34

               
               
               Conread position:3-214
               
               
               Cow position:chr4:57566688-57566485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-216
               
               
               Cow position:chr4:46060935-46061158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:3-217
               
               
               Cow position:chr4:19238212-19238426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 169

               
               
               Conread position:3-218
               
               
               Cow position:chr4:12901565-12901341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 150

               
               
               Conread position:3-218
               
               
               Cow position:chr4:22138229-22138005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):23, 203

               
               
               Conread position:3-218
               
               
               Cow position:chr4:31506031-31505807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 201

               
               
               Conread position:3-219
               
               
               Cow position:chr4:31177817-31178032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):23, 123

               
               
               Conread position:3-219
               
               
               Cow position:chr4:59873422-59873640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):18, 98

               
               
               Conread position:3-222
               
               
               Cow position:chr4:617385-617163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):20, 195

               
               
               Conread position:3-223
               
               
               Cow position:chr4:9795387-9795157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 40

               
               
               Conread position:3-223
               
               
               Cow position:chr4:23059863-23059637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:3-223
               
               
               Cow position:chr4:45799865-45800095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 196

               
               
               Conread position:3-223
               
               
               Cow position:chr4:47305070-47305297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):23, 201

               
               
               Conread position:3-223
               
               
               Cow position:chr4:54881082-54880857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 138

               
               
               Conread position:3-224
               
               
               Cow position:chr4:9444694-9444468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 199

               
               
               Conread position:3-226
               
               
               Cow position:chr4:2681326-2681546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):20, 149

               
               
               Conread position:3-228
               
               
               Cow position:chr4:5790639-5790865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):30, 197

               
               
               Conread position:3-233
               
               
               Cow position:chr4:7964655-7964421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 93

               
               
               Conread position:4-155
               
               
               Cow position:chr4:46456071-46455916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr4:48127565-48127752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:4-184
               
               
               Cow position:chr4:23445052-23444860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):19, 79

               
               
               Conread position:4-185
               
               
               Cow position:chr4:45775344-45775151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:4-192
               
               
               Cow position:chr4:38358827-38358637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):21, 142

               
               
               Conread position:4-192
               
               
               Cow position:chr4:46526999-46527190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 103

               
               
               Conread position:4-200
               
               
               Cow position:chr4:60955325-60955515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 93

               
               
               Conread position:4-200
               
               
               Cow position:chr4:66380339-66380142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-201
               
               
               Cow position:chr4:21112574-21112378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):20, 108

               
               
               Conread position:4-204
               
               
               Cow position:chr4:16091322-16091119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 82

               
               
               Conread position:4-204
               
               
               Cow position:chr4:37732489-37732281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-204
               
               
               Cow position:chr4:50687863-50687667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 63

               
               
               Conread position:4-207
               
               
               Cow position:chr4:12004212-12004416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 176

               
               
               Conread position:4-207
               
               
               Cow position:chr4:27632441-27632642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:4-207
               
               
               Cow position:chr4:46883677-46883465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-207
               
               
               Cow position:chr4:67393091-67393295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):17, 8

               
               
               Conread position:4-208
               
               
               Cow position:chr4:16762732-16762515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 171

               
               
               Conread position:4-211
               
               
               Cow position:chr4:11897301-11897097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-212
               
               
               Cow position:chr4:203149-202937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):18, 147

               
               
               Conread position:4-212
               
               
               Cow position:chr4:12127641-12127435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 104

               
               
               Conread position:4-214
               
               
               Cow position:chr4:58248399-58248611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):18, 128

               
               
               Conread position:4-219
               
               
               Cow position:chr4:38946214-38946429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 195

               
               
               Conread position:4-220
               
               
               Cow position:chr4:33181538-33181756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):22, 164

               
               
               Conread position:4-220
               
               
               Cow position:chr4:34165973-34165769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 13

               
               
               Conread position:4-221
               
               
               Cow position:chr4:42347478-42347699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:4-223
               
               
               Cow position:chr4:36876858-36876640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):28, 33

               
               
               Conread position:4-224
               
               
               Cow position:chr4:22546847-22546628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:4-226
               
               
               Cow position:chr4:5577215-5576991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 81

               
               
               Conread position:5-185
               
               
               Cow position:chr4:48137943-48138123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 36

               
               
               Conread position:5-201
               
               
               Cow position:chr4:14131432-14131618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:5-203
               
               
               Cow position:chr4:12867104-12867297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):8, 46

               
               
               Conread position:6-194
               
               
               Cow position:chr4:23985124-23984930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:7-215
               
               
               Cow position:chr4:41780242-41780025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):19, 74

               
               
               Conread position:7-223
               
               
               Cow position:chr4:45773464-45773684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:8-203
               
               
               Cow position:chr4:2713856-2713661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:8-223
               
               
               Cow position:chr4:45706043-45706253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 141

               
               
               Conread position:8-223
               
               
               Cow position:chr4:56745994-56746210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):57, 32

               
               
               Conread position:10-174
               
               
               Cow position:chr4:17052593-17052417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 43

               
               
               Conread position:10-199
               
               
               Cow position:chr4:54937087-54937287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:10-204
               
               
               Cow position:chr4:6073050-6072854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:10-204
               
               
               Cow position:chr4:59015592-59015778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):11, 94

               
               
               Conread position:10-223
               
               
               Cow position:chr4:53347970-53347767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:163
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):12, 41

               
               
               Conread position:11-217
               
               
               Cow position:chr4:36717484-36717699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:11-220
               
               
               Cow position:chr4:50606416-50606627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):55, 18

               
               
               Conread position:12-192
               
               
               Cow position:chr4:13222178-13221994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 7

               
               
               Conread position:12-211
               
               
               Cow position:chr4:48031723-48031520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 7

               
               
               Conread position:12-215
               
               
               Cow position:chr4:60761647-60761850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:13-204
               
               
               Cow position:chr4:43909771-43909964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):53, 6

               
               
               Conread position:13-213
               
               
               Cow position:chr4:55694184-55694377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):54, 6

               
               
               Conread position:14-200
               
               
               Cow position:chr4:46447172-46446993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 102

               
               
               Conread position:15-182
               
               
               Cow position:chr4:39091895-39092060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):8, 108

               
               
               Conread position:16-224
               
               
               Cow position:chr4:17790279-17790078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:18-214
               
               
               Cow position:chr4:37985746-37985937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:18-219
               
               
               Cow position:chr4:40995745-40995946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:159
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:19-180
               
               
               Cow position:chr4:68808094-68807931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr4:4827140-4827312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 130

               
               
               Conread position:19-186
               
               
               Cow position:chr4:14512543-14512372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-199
               
               
               Cow position:chr4:2774728-2774916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:19-203
               
               
               Cow position:chr4:8675384-8675563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 35

               
               
               Conread position:19-204
               
               
               Cow position:chr4:30691019-30691201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:19-204
               
               
               Cow position:chr4:38822301-38822120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:19-205
               
               
               Cow position:chr4:30647870-30648047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):172, 16

               
               
               Conread position:19-208
               
               
               Cow position:chr4:656793-656606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 31

               
               
               Conread position:19-213
               
               
               Cow position:chr4:25197480-25197286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):44, 178

               
               
               Conread position:19-213
               
               
               Cow position:chr4:39010064-39010260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:19-213
               
               
               Cow position:chr4:42044960-42044768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):46, 96

               
               
               Conread position:19-217
               
               
               Cow position:chr4:45840413-45840602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:19-219
               
               
               Cow position:chr4:18974438-18974637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):45, 105

               
               
               Conread position:19-220
               
               
               Cow position:chr4:4647414-4647614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:19-220
               
               
               Cow position:chr4:37675628-37675841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):46, 162

               
               
               Conread position:19-223
               
               
               Cow position:chr4:23807964-23808176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):46, 154

               
               
               Conread position:19-223
               
               
               Cow position:chr4:61608950-61608751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):44, 102

               
               
               Conread position:19-225
               
               
               Cow position:chr4:66547753-66547547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:20-223
               
               
               Cow position:chr4:3299774-3299579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):181, 15

               
               
               Conread position:20-223
               
               
               Cow position:chr4:8352549-8352351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 86

               
               
               Conread position:21-225
               
               
               Cow position:chr4:47417429-47417638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):44, 153

               
               
               Conread position:22-219
               
               
               Cow position:chr4:45837610-45837419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 126

               
               
               Conread position:24-185
               
               
               Cow position:chr4:30845391-30845564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-200
               
               
               Cow position:chr4:20147203-20147379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 88

               
               
               Conread position:24-206
               
               
               Cow position:chr4:3388564-3388742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 140

               
               
               Conread position:24-213
               
               
               Cow position:chr4:36709040-36709230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:25-160
               
               
               Cow position:chr4:22051095-22050958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-191
               
               
               Cow position:chr4:24093114-24092946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr4:3853496-3853665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-192
               
               
               Cow position:chr4:19708960-19709129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr4:27699052-27699226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-197
               
               
               Cow position:chr4:34630919-34631098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 67

               
               
               Conread position:25-199
               
               
               Cow position:chr4:44613026-44613198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:25-199
               
               
               Cow position:chr4:68159436-68159270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:25-200
               
               
               Cow position:chr4:15905121-15905300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr4:6094045-6093869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr4:45588410-45588236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-201
               
               
               Cow position:chr4:46235139-46234968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr4:22101244-22101063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-211
               
               
               Cow position:chr4:48907809-48907997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:25-212
               
               
               Cow position:chr4:1985668-1985857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-212
               
               
               Cow position:chr4:25802711-25802900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-212
               
               
               Cow position:chr4:63261491-63261678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:25-213
               
               
               Cow position:chr4:30769056-30769239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:25-214
               
               
               Cow position:chr4:38949516-38949321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):39, 178

               
               
               Conread position:25-215
               
               
               Cow position:chr4:24371839-24371646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 68

               
               
               Conread position:25-215
               
               
               Cow position:chr4:39847750-39847941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):170, 162

               
               
               Conread position:25-215
               
               
               Cow position:chr4:66358625-66358432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-216
               
               
               Cow position:chr4:26959948-26959759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-216
               
               
               Cow position:chr4:35974383-35974576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:25-217
               
               
               Cow position:chr4:13372019-13372210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-217
               
               
               Cow position:chr4:16118709-16118522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:25-218
               
               
               Cow position:chr4:23451073-23450879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 180

               
               
               Conread position:25-218
               
               
               Cow position:chr4:32561850-32562042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:25-218
               
               
               Cow position:chr4:56236531-56236341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 84

               
               
               Conread position:25-219
               
               
               Cow position:chr4:20124947-20124754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 103

               
               
               Conread position:25-219
               
               
               Cow position:chr4:44773022-44772825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr4:1646071-1645872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:25-220
               
               
               Cow position:chr4:7698287-7698477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):41, 25

               
               
               Conread position:25-221
               
               
               Cow position:chr4:40392836-40393023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:25-223
               
               
               Cow position:chr4:16870190-16869990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr4:43579392-43579199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:25-223
               
               
               Cow position:chr4:69290722-69290525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 30

               
               
               Conread position:25-224
               
               
               Cow position:chr4:16814403-16814616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-225
               
               
               Cow position:chr4:52823381-52823186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:25-225
               
               
               Cow position:chr4:68491030-68491227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 29

               
               
               Conread position:25-231
               
               
               Cow position:chr4:27276523-27276319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 92

               
               
               Conread position:28-185
               
               
               Cow position:chr4:5145999-5145840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr4:26323764-26323923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr4:27511568-27511727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:28-186
               
               
               Cow position:chr4:48693622-48693775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:28-192
               
               
               Cow position:chr4:19102858-19102690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-192
               
               
               Cow position:chr4:41907558-41907396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 96

               
               
               Conread position:28-199
               
               
               Cow position:chr4:34919246-34919081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr4:62794340-62794163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr4:56005777-56005950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-201
               
               
               Cow position:chr4:7043796-7043623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 78

               
               
               Conread position:28-204
               
               
               Cow position:chr4:11154292-11154471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr4:19199263-19199085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr4:34641702-34641526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 60

               
               
               Conread position:28-204
               
               
               Cow position:chr4:46136774-46136946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):35, 72

               
               
               Conread position:28-204
               
               
               Cow position:chr4:46435348-46435531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 174

               
               
               Conread position:28-207
               
               
               Cow position:chr4:29247177-29246999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 140

               
               
               Conread position:28-208
               
               
               Cow position:chr4:17201279-17201458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-212
               
               
               Cow position:chr4:19200136-19200312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:28-212
               
               
               Cow position:chr4:20877326-20877141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 137

               
               
               Conread position:28-212
               
               
               Cow position:chr4:33388880-33389066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):31, 163

               
               
               Conread position:28-213
               
               
               Cow position:chr4:45874442-45874257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):37, 136

               
               
               Conread position:28-214
               
               
               Cow position:chr4:23847027-23846847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 67

               
               
               Conread position:28-214
               
               
               Cow position:chr4:42423781-42423593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:28-214
               
               
               Cow position:chr4:47262558-47262745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:28-214
               
               
               Cow position:chr4:48322057-48322251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):20, 77

               
               
               Conread position:28-214
               
               
               Cow position:chr4:59002115-59001933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:28-215
               
               
               Cow position:chr4:14542654-14542464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:28-216
               
               
               Cow position:chr4:29106931-29107121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 67

               
               
               Conread position:28-217
               
               
               Cow position:chr4:37915312-37915128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:28-218
               
               
               Cow position:chr4:3407679-3407871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:28-218
               
               
               Cow position:chr4:38209951-38209768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-218
               
               
               Cow position:chr4:46656153-46656348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr4:19542960-19543154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:28-222
               
               
               Cow position:chr4:45685481-45685669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:28-223
               
               
               Cow position:chr4:46528962-46528765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr4:10915812-10915616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:28-226
               
               
               Cow position:chr4:8086989-8086790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:28-226
               
               
               Cow position:chr4:32693812-32694009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:28-233
               
               
               Cow position:chr4:13660111-13660321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-233
               
               
               Cow position:chr4:19325283-19325494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-237
               
               
               Cow position:chr4:46393461-46393671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:28-240
               
               
               Cow position:chr4:28841440-28841655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:29-185
               
               
               Cow position:chr4:11901485-11901327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-200
               
               
               Cow position:chr4:19420732-19420562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 115

               
               
               Conread position:29-204
               
               
               Cow position:chr4:19584728-19584912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-204
               
               
               Cow position:chr4:23943620-23943445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):36, 94

               
               
               Conread position:29-208
               
               
               Cow position:chr4:28836561-28836739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):175, 144

               
               
               Conread position:29-217
               
               
               Cow position:chr4:34383316-34383127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:29-224
               
               
               Cow position:chr4:36290650-36290838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 7

               
               
               Conread position:29-232
               
               
               Cow position:chr4:2099653-2099860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):24, 138

               
               
               Conread position:30-192
               
               
               Cow position:chr4:50131542-50131708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:30-201
               
               
               Cow position:chr4:50837727-50837898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 85

               
               
               Conread position:30-216
               
               
               Cow position:chr4:23271308-23271492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):33, 107

               
               
               Conread position:32-199
               
               
               Cow position:chr4:60370501-60370333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:32-200
               
               
               Cow position:chr4:31091614-31091784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-204
               
               
               Cow position:chr4:3340980-3341155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 132

               
               
               Conread position:33-196
               
               
               Cow position:chr4:13590112-13590277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:35-193
               
               
               Cow position:chr4:27691642-27691483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr4:11185994-11186166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr4:56755885-56756055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:35-208
               
               
               Cow position:chr4:45963914-45964092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-218
               
               
               Cow position:chr4:5250218-5250402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:35-218
               
               
               Cow position:chr4:61451244-61451428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 158

               
               
               Conread position:36-198
               
               
               Cow position:chr4:59105651-59105493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:36-204
               
               
               Cow position:chr4:4516839-4516673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):76, 57

               
               
               Conread position:36-204
               
               
               Cow position:chr4:26644774-26644945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr4:32458828-32458658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr4:51617967-51617798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 78

               
               
               Conread position:36-211
               
               
               Cow position:chr4:60527212-60527388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 90

               
               
               Conread position:36-212
               
               
               Cow position:chr4:17076248-17076071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):6, 51

               
               
               Conread position:36-214
               
               
               Cow position:chr4:59557471-59557647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 76

               
               
               Conread position:36-216
               
               
               Cow position:chr4:62021625-62021807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-218
               
               
               Cow position:chr4:50368441-50368623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:36-218
               
               
               Cow position:chr4:53189088-53189274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-226
               
               
               Cow position:chr4:16637043-16636854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 112

               
               
               Conread position:37-186
               
               
               Cow position:chr4:46494335-46494481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):5, 87

               
               
               Conread position:37-192
               
               
               Cow position:chr4:63293492-63293644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 49

               
               
               Conread position:37-217
               
               
               Cow position:chr4:17051254-17051075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 64

               
               
               Conread position:37-218
               
               
               Cow position:chr4:48104537-48104354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):7, 100

               
               
               Conread position:37-224
               
               
               Cow position:chr4:58045603-58045414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:38-184
               
               
               Cow position:chr4:52777069-52777218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:39-217
               
               
               Cow position:chr4:45801550-45801730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):27, 65

               
               
               Conread position:39-219
               
               
               Cow position:chr4:34722853-34722673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 164

               
               
               Conread position:39-234
               
               
               Cow position:chr4:13131509-13131712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 111

               
               
               Conread position:40-214
               
               
               Cow position:chr4:35578901-35578727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:40-214
               
               
               Cow position:chr4:49808553-49808727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 52

               
               
               Conread position:40-217
               
               
               Cow position:chr4:63952132-63951954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:40-218
               
               
               Cow position:chr4:61999162-61998987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):26, 72

               
               
               Conread position:40-220
               
               
               Cow position:chr4:2770109-2770282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:40-220
               
               
               Cow position:chr4:23757804-23757981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 156

               
               
               Conread position:41-199
               
               
               Cow position:chr4:28854238-28854083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 82

               
               
               Conread position:41-204
               
               
               Cow position:chr4:35982036-35982198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 35

               
               
               Conread position:41-204
               
               
               Cow position:chr4:45723282-45723447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:41-224
               
               
               Cow position:chr4:501646-501454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 173

               
               
               Conread position:42-213
               
               
               Cow position:chr4:53050030-53050201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):25, 156

               
               
               Conread position:42-214
               
               
               Cow position:chr4:59074704-59074531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 156

               
               
               Conread position:42-220
               
               
               Cow position:chr4:47125804-47125627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 156

               
               
               Conread position:42-221
               
               
               Cow position:chr4:30943992-30944166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 74

               
               
               Conread position:50-201
               
               
               Cow position:chr4:54315180-54315027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:50-215
               
               
               Cow position:chr4:7816338-7816507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 153

               
               
               Conread position:50-223
               
               
               Cow position:chr4:33838757-33838590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 72

               
               
               Conread position:50-223
               
               
               Cow position:chr4:53941751-53941577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):16, 158

               
               
               Conread position:52-218
               
               
               Cow position:chr4:31023492-31023657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):13, 145

               
               
               Conread position:53-216
               
               
               Cow position:chr4:44024494-44024328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):14, 24

               
               
               Conread position:54-186
               
               
               Cow position:chr4:46258541-46258675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:56-212
               
               
               Cow position:chr4:60821751-60821908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 143

               
               
               Conread position:58-204
               
               
               Cow position:chr4:12473900-12474048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):7, 131

               
               
               Conread position:58-204
               
               
               Cow position:chr4:13284433-13284581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):7, 131

               
               
               Conread position:58-204
               
               
               Cow position:chr4:69223177-69223324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:59-222
               
               
               Cow position:chr4:47035667-47035506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:60-203
               
               
               Cow position:chr4:61214793-61214661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:60-217
               
               
               Cow position:chr4:20470935-20471088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):72, 44

               
               
               Conread position:60-224
               
               
               Cow position:chr4:49338099-49338259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):140, 64

               
               
               Conread position:61-225
               
               
               Cow position:chr4:63203235-63203400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 163

               
               
               Conread position:62-198
               
               
               Cow position:chr4:68569588-68569452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr4:42277930-42277794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:62-201
               
               
               Cow position:chr4:69286729-69286590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr4:12245269-12245409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr4:13297441-13297580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr4:46176239-46176089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr4:30935303-30935148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr4:45852890-45852736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):139, 67

               
               
               Conread position:62-219
               
               
               Cow position:chr4:48042416-48042270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr4:29116719-29116557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr4:63198312-63198149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr4:61389010-61388855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:62-222
               
               
               Cow position:chr4:47748471-47748631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):138, 41

               
               
               Conread position:62-223
               
               
               Cow position:chr4:22164136-22164289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:62-224
               
               
               Cow position:chr4:34722427-34722589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-228
               
               
               Cow position:chr4:15439641-15439806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 135

               
               
               Conread position:63-199
               
               
               Cow position:chr4:9571165-9571299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:63-204
               
               
               Cow position:chr4:60332174-60332029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:63-218
               
               
               Cow position:chr4:3519482-3519629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:63-219
               
               
               Cow position:chr4:42672575-42672418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):47, 135

               
               
               Conread position:63-223
               
               
               Cow position:chr4:8389021-8388860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):53, 47

               
               
               Conread position:64-213
               
               
               Cow position:chr4:41900026-41900172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):117, 102

               
               
               Conread position:64-219
               
               
               Cow position:chr4:21088810-21088657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:64-220
               
               
               Cow position:chr4:66354896-66354743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:65-183
               
               
               Cow position:chr4:45665515-45665633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-204
               
               
               Cow position:chr4:43436325-43436464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-220
               
               
               Cow position:chr4:20196573-20196726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 97

               
               
               Conread position:66-186
               
               
               Cow position:chr4:26183195-26183315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-223
               
               
               Cow position:chr4:45742023-45741865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:70-220
               
               
               Cow position:chr4:45629979-45629828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:73-192
               
               
               Cow position:chr4:1184826-1184943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:74-221
               
               
               Cow position:chr4:39656599-39656743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:76-219
               
               
               Cow position:chr4:57589479-57589621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:77-219
               
               
               Cow position:chr4:14994242-14994386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:80-223
               
               
               Cow position:chr4:43710080-43709937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):132, 8

               
               
               Conread position:88-224
               
               
               Cow position:chr4:33273263-33273124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:89-205
               
               
               Cow position:chr4:57568982-57568867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:89-218
               
               
               Cow position:chr4:45660926-45660798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:93-201
               
               
               Cow position:chr4:23809715-23809607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:95-223
               
               
               Cow position:chr4:55675269-55675141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:96-217
               
               
               Cow position:chr4:47451568-47451689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:96-236
               
               
               Cow position:chr4:26585158-26585297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:103-215
               
               
               Cow position:chr4:19292810-19292923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:108-223
               
               
               Cow position:chr4:11773373-11773257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:112-223
               
               
               Cow position:chr4:31761605-31761715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:114-223
               
               
               Cow position:chr4:45669507-45669397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:89
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:115-223
               
               
               Cow position:chr4:38886947-38886838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:89
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr5:20812570-20812761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr5:69033192-69033008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-192
               
               
               Cow position:chr5:44734697-44734506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:1-199
               
               
               Cow position:chr5:52165149-52164945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):12, 27

               
               
               Conread position:1-200
               
               
               Cow position:chr5:11769299-11769501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 19

               
               
               Conread position:1-201
               
               
               Cow position:chr5:30247494-30247296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:1-203
               
               
               Cow position:chr5:5855886-5856091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):12, 199

               
               
               Conread position:1-204
               
               
               Cow position:chr5:22102584-22102785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 19

               
               
               Conread position:1-204
               
               
               Cow position:chr5:35969561-35969772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):19, 202

               
               
               Conread position:1-213
               
               
               Cow position:chr5:57767955-57767748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):64, 94

               
               
               Conread position:1-218
               
               
               Cow position:chr5:44796705-44796489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):12, 124

               
               
               Conread position:1-219
               
               
               Cow position:chr5:33560704-33560490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 125

               
               
               Conread position:1-220
               
               
               Cow position:chr5:2469179-2468965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):13, 66

               
               
               Conread position:1-220
               
               
               Cow position:chr5:26549112-26548897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 113

               
               
               Conread position:1-222
               
               
               Cow position:chr5:16668725-16668944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:1-223
               
               
               Cow position:chr5:56549392-56549619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:2-199
               
               
               Cow position:chr5:29828075-29828276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):18, 92

               
               
               Conread position:2-208
               
               
               Cow position:chr5:63173018-63172813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:2-212
               
               
               Cow position:chr5:12901944-12902159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):13, 200

               
               
               Conread position:3-180
               
               
               Cow position:chr5:16939568-16939383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr5:35513241-35513430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr5:53980724-53980538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:3-186
               
               
               Cow position:chr5:66659535-66659729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr5:34976816-34976611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr5:31475708-31475912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 191

               
               
               Conread position:3-201
               
               
               Cow position:chr5:55783924-55783731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-202
               
               
               Cow position:chr5:48867438-48867237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:3-202
               
               
               Cow position:chr5:56060044-56059834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):23, 205

               
               
               Conread position:3-204
               
               
               Cow position:chr5:20128078-20128287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr5:32975527-32975325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:3-207
               
               
               Cow position:chr5:47756802-47757006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:3-212
               
               
               Cow position:chr5:7057375-7057158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):22, 56

               
               
               Conread position:3-213
               
               
               Cow position:chr5:50723072-50723289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 201

               
               
               Conread position:3-214
               
               
               Cow position:chr5:66581987-66582210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 96

               
               
               Conread position:3-215
               
               
               Cow position:chr5:61999531-61999311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr5:35208290-35208509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:3-217
               
               
               Cow position:chr5:41935625-41935409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:3-218
               
               
               Cow position:chr5:15364295-15364518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):22, 53

               
               
               Conread position:3-218
               
               
               Cow position:chr5:61576571-61576794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 185

               
               
               Conread position:3-218
               
               
               Cow position:chr5:61580308-61580523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):25, 109

               
               
               Conread position:3-220
               
               
               Cow position:chr5:14550558-14550333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr5:27099386-27099604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-220
               
               
               Cow position:chr5:28814921-28814699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 205

               
               
               Conread position:3-223
               
               
               Cow position:chr5:1247292-1247511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):18, 165

               
               
               Conread position:3-225
               
               
               Cow position:chr5:60515002-60514772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):22, 202

               
               
               Conread position:3-227
               
               
               Cow position:chr5:43604167-43604390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 100

               
               
               Conread position:3-230
               
               
               Cow position:chr5:17828453-17828221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):23, 201

               
               
               Conread position:3-230
               
               
               Cow position:chr5:60422944-60422709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 168

               
               
               Conread position:4-192
               
               
               Cow position:chr5:12761085-12760899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-201
               
               
               Cow position:chr5:17104880-17105073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):22, 116

               
               
               Conread position:4-203
               
               
               Cow position:chr5:55955935-55956142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):18, 109

               
               
               Conread position:4-204
               
               
               Cow position:chr5:42845566-42845366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:4-204
               
               
               Cow position:chr5:57062502-57062296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:4-208
               
               
               Cow position:chr5:5201934-5202142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 23

               
               
               Conread position:4-208
               
               
               Cow position:chr5:66972456-66972667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):21, 155

               
               
               Conread position:4-212
               
               
               Cow position:chr5:57756001-57755795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 49

               
               
               Conread position:4-214
               
               
               Cow position:chr5:33273722-33273941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:4-217
               
               
               Cow position:chr5:3771877-3772089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:4-218
               
               
               Cow position:chr5:61049365-61049581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:4-219
               
               
               Cow position:chr5:18574202-18574426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):42, 21

               
               
               Conread position:4-219
               
               
               Cow position:chr5:39937143-39937359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:174
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):16, 184

               
               
               Conread position:4-219
               
               
               Cow position:chr5:71579490-71579705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):21, 86

               
               
               Conread position:4-220
               
               
               Cow position:chr5:36868770-36868987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):190, 0

               
               
               Conread position:4-220
               
               
               Cow position:chr5:58519383-58519168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):62, 167

               
               
               Conread position:4-223
               
               
               Cow position:chr5:19335748-19335523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:4-223
               
               
               Cow position:chr5:65679943-65679719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 105

               
               
               Conread position:4-224
               
               
               Cow position:chr5:35247079-35246855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):7, 211

               
               
               Conread position:4-224
               
               
               Cow position:chr5:55965867-55965638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):20, 194

               
               
               Conread position:4-225
               
               
               Cow position:chr5:19811559-19811770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:4-235
               
               
               Cow position:chr5:6444120-6443875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:5-192
               
               
               Cow position:chr5:39447507-39447304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:5-195
               
               
               Cow position:chr5:11540022-11539828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 66

               
               
               Conread position:5-204
               
               
               Cow position:chr5:37255303-37255100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:5-225
               
               
               Cow position:chr5:57399224-57399001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):21, 195

               
               
               Conread position:5-233
               
               
               Cow position:chr5:57393270-57393043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):61, 74

               
               
               Conread position:6-183
               
               
               Cow position:chr5:38040531-38040356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:6-192
               
               
               Cow position:chr5:55756389-55756192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:6-204
               
               
               Cow position:chr5:1104846-1104642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-204
               
               
               Cow position:chr5:50579131-50578931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):57, 110

               
               
               Conread position:6-215
               
               
               Cow position:chr5:18289158-18289363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:6-217
               
               
               Cow position:chr5:49919957-49920171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):6, 184

               
               
               Conread position:6-217
               
               
               Cow position:chr5:59384660-59384441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 160

               
               
               Conread position:7-204
               
               
               Cow position:chr5:33834076-33834272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 6

               
               
               Conread position:8-181
               
               
               Cow position:chr5:52778526-52778354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):43, 17

               
               
               Conread position:8-199
               
               
               Cow position:chr5:69765996-69765806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:8-212
               
               
               Cow position:chr5:17999459-17999255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):57, 129

               
               
               Conread position:8-222
               
               
               Cow position:chr5:20779362-20779150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:8-223
               
               
               Cow position:chr5:70678610-70678394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):7, 99

               
               
               Conread position:8-234
               
               
               Cow position:chr5:70750152-70749925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:9-223
               
               
               Cow position:chr5:59057700-59057496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:10-185
               
               
               Cow position:chr5:52723609-52723789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:10-191
               
               
               Cow position:chr5:60948166-60948352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 123

               
               
               Conread position:10-217
               
               
               Cow position:chr5:54340804-54341011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):21, 161

               
               
               Conread position:10-218
               
               
               Cow position:chr5:5016462-5016670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):14, 108

               
               
               Conread position:10-221
               
               
               Cow position:chr5:26262641-26262436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 15

               
               
               Conread position:10-223
               
               
               Cow position:chr5:34347695-34347483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):55, 40

               
               
               Conread position:10-223
               
               
               Cow position:chr5:43332686-43332472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 19

               
               
               Conread position:11-199
               
               
               Cow position:chr5:19752341-19752528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):28, 14

               
               
               Conread position:11-214
               
               
               Cow position:chr5:34288216-34288013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 117

               
               
               Conread position:12-198
               
               
               Cow position:chr5:36143027-36143205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:12-198
               
               
               Cow position:chr5:71015843-71015658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:12-220
               
               
               Cow position:chr5:41755950-41755740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):14, 146

               
               
               Conread position:12-224
               
               
               Cow position:chr5:37941766-37941554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):53, 108

               
               
               Conread position:13-228
               
               
               Cow position:chr5:2827413-2827631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):18, 6

               
               
               Conread position:14-199
               
               
               Cow position:chr5:56860484-56860671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 11

               
               
               Conread position:14-215
               
               
               Cow position:chr5:38770574-38770370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):6, 180

               
               
               Conread position:15-217
               
               
               Cow position:chr5:65140340-65140542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:16-195
               
               
               Cow position:chr5:18062273-18062086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):50, 20

               
               
               Conread position:16-219
               
               
               Cow position:chr5:2355566-2355765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:16-219
               
               
               Cow position:chr5:63647430-63647233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:17-183
               
               
               Cow position:chr5:69682303-69682135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:17-186
               
               
               Cow position:chr5:52029453-52029619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):151, 46

               
               
               Conread position:17-212
               
               
               Cow position:chr5:58401616-58401806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):50, 8

               
               
               Conread position:18-204
               
               
               Cow position:chr5:25035212-25035021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr5:39146935-39146767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr5:57087015-57086835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 92

               
               
               Conread position:19-201
               
               
               Cow position:chr5:20995038-20994859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):46, 132

               
               
               Conread position:19-201
               
               
               Cow position:chr5:30629111-30628923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:19-204
               
               
               Cow position:chr5:16937974-16937801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:19-208
               
               
               Cow position:chr5:57526876-57526690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-209
               
               
               Cow position:chr5:29681146-29681335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):171, 46

               
               
               Conread position:19-214
               
               
               Cow position:chr5:37842231-37842037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:19-216
               
               
               Cow position:chr5:21339221-21339014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 24

               
               
               Conread position:19-219
               
               
               Cow position:chr5:37090591-37090389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:19-220
               
               
               Cow position:chr5:5760265-5760058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):94, 46

               
               
               Conread position:19-220
               
               
               Cow position:chr5:20843347-20843151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 85

               
               
               Conread position:19-220
               
               
               Cow position:chr5:44396147-44396350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 166

               
               
               Conread position:19-220
               
               
               Cow position:chr5:64843923-64843716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-221
               
               
               Cow position:chr5:1005820-1005615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-222
               
               
               Cow position:chr5:55041257-55041463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-226
               
               
               Cow position:chr5:13270969-13270758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 13

               
               
               Conread position:19-227
               
               
               Cow position:chr5:20345585-20345797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 67

               
               
               Conread position:20-223
               
               
               Cow position:chr5:19561401-19561196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):9, 190

               
               
               Conread position:20-223
               
               
               Cow position:chr5:24464796-24464991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):182, 24

               
               
               Conread position:21-225
               
               
               Cow position:chr5:51053599-51053395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:22-211
               
               
               Cow position:chr5:42674223-42674401 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:23-192
               
               
               Cow position:chr5:41530888-41530715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:24-192
               
               
               Cow position:chr5:7012797-7012628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):41, 63

               
               
               Conread position:24-224
               
               
               Cow position:chr5:742783-742984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):41, 88

               
               
               Conread position:24-224
               
               
               Cow position:chr5:4280501-4280697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):41, 92

               
               
               Conread position:25-184
               
               
               Cow position:chr5:41884973-41885127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 52

               
               
               Conread position:25-184
               
               
               Cow position:chr5:51233965-51233811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 94

               
               
               Conread position:25-185
               
               
               Cow position:chr5:53946951-53947113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr5:65745711-65745554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:25-192
               
               
               Cow position:chr5:26097343-26097512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-192
               
               
               Cow position:chr5:29256653-29256487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):51, 37

               
               
               Conread position:25-197
               
               
               Cow position:chr5:30492740-30492565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-201
               
               
               Cow position:chr5:59335824-59336001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-204
               
               
               Cow position:chr5:3743376-3743559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 76

               
               
               Conread position:25-204
               
               
               Cow position:chr5:54312655-54312832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:25-204
               
               
               Cow position:chr5:57687529-57687349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):36, 171

               
               
               Conread position:25-205
               
               
               Cow position:chr5:44847967-44847793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 81

               
               
               Conread position:25-208
               
               
               Cow position:chr5:14454095-14454280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:25-208
               
               
               Cow position:chr5:44810185-44810002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):39, 170

               
               
               Conread position:25-211
               
               
               Cow position:chr5:14904014-14903828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:25-211
               
               
               Cow position:chr5:30561986-30562166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:25-212
               
               
               Cow position:chr5:65552657-65552483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr5:29172041-29172232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:25-214
               
               
               Cow position:chr5:42064259-42064449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-216
               
               
               Cow position:chr5:19972753-19972563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):40, 121

               
               
               Conread position:25-216
               
               
               Cow position:chr5:56525658-56525468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:25-217
               
               
               Cow position:chr5:49407339-49407146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:25-217
               
               
               Cow position:chr5:64492328-64492522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr5:41226952-41226757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:25-219
               
               
               Cow position:chr5:49821482-49821679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-219
               
               
               Cow position:chr5:54127344-54127530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:25-220
               
               
               Cow position:chr5:26497623-26497439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):39, 56

               
               
               Conread position:25-221
               
               
               Cow position:chr5:29829835-29829638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:25-222
               
               
               Cow position:chr5:11668131-11667935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 110

               
               
               Conread position:25-222
               
               
               Cow position:chr5:62811878-62812076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-223
               
               
               Cow position:chr5:4864597-4864788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:25-223
               
               
               Cow position:chr5:38683557-38683755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:25-223
               
               
               Cow position:chr5:54750861-54751058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):41, 99

               
               
               Conread position:25-224
               
               
               Cow position:chr5:48062063-48061855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:25-224
               
               
               Cow position:chr5:54404800-54404610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):40, 28

               
               
               Conread position:25-225
               
               
               Cow position:chr5:11427179-11426980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:25-225
               
               
               Cow position:chr5:67950732-67950532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):38, 93

               
               
               Conread position:25-226
               
               
               Cow position:chr5:2309502-2309302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 69

               
               
               Conread position:25-226
               
               
               Cow position:chr5:7177205-7177408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):42, 99

               
               
               Conread position:25-232
               
               
               Cow position:chr5:61914618-61914828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):40, 178

               
               
               Conread position:25-236
               
               
               Cow position:chr5:46681665-46681461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):41, 62

               
               
               Conread position:25-238
               
               
               Cow position:chr5:35229084-35228879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:26-204
               
               
               Cow position:chr5:43611753-43611931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:26-204
               
               
               Cow position:chr5:57497368-57497193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 10

               
               
               Conread position:28-183
               
               
               Cow position:chr5:30035124-30035281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-183
               
               
               Cow position:chr5:60741301-60741457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-186
               
               
               Cow position:chr5:6503824-6503661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-186
               
               
               Cow position:chr5:62572589-62572746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:28-192
               
               
               Cow position:chr5:30253798-30253961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-200
               
               
               Cow position:chr5:43846328-43846150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):21, 132

               
               
               Conread position:28-200
               
               
               Cow position:chr5:55166777-55166949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:28-201
               
               
               Cow position:chr5:43402962-43403137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:28-204
               
               
               Cow position:chr5:2423230-2423056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr5:16185435-16185613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr5:17683386-17683211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 81

               
               
               Conread position:28-204
               
               
               Cow position:chr5:19052735-19052558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:28-204
               
               
               Cow position:chr5:20288206-20288023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr5:22565676-22565852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 115

               
               
               Conread position:28-204
               
               
               Cow position:chr5:24915470-24915292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr5:25495301-25495118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 150

               
               
               Conread position:28-204
               
               
               Cow position:chr5:35319505-35319327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr5:55162683-55162861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-206
               
               
               Cow position:chr5:39035837-39036017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):36, 62

               
               
               Conread position:28-208
               
               
               Cow position:chr5:19278649-19278465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:28-208
               
               
               Cow position:chr5:35459237-35459059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 98

               
               
               Conread position:28-213
               
               
               Cow position:chr5:58875-58688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):35, 26

               
               
               Conread position:28-213
               
               
               Cow position:chr5:23209014-23209201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-213
               
               
               Cow position:chr5:34918403-34918585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:28-214
               
               
               Cow position:chr5:24996165-24995979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 22

               
               
               Conread position:28-215
               
               
               Cow position:chr5:29895228-29895412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-215
               
               
               Cow position:chr5:56284360-56284550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):37, 172

               
               
               Conread position:28-216
               
               
               Cow position:chr5:37933771-37933959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 28

               
               
               Conread position:28-218
               
               
               Cow position:chr5:32935801-32935996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr5:52136997-52136804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr5:63241034-63241227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr5:37265985-37265788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr5:52052410-52052217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr5:6126893-6127081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):175, 37

               
               
               Conread position:28-220
               
               
               Cow position:chr5:30178447-30178250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr5:40889240-40889045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr5:57265847-57265650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr5:62011740-62011931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):38, 136

               
               
               Conread position:28-220
               
               
               Cow position:chr5:68461616-68461423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 137

               
               
               Conread position:28-220
               
               
               Cow position:chr5:71445447-71445638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:28-222
               
               
               Cow position:chr5:12299968-12300162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:28-222
               
               
               Cow position:chr5:52853028-52853218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:28-223
               
               
               Cow position:chr5:13957081-13957279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr5:36747025-36746831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr5:38853406-38853604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr5:43371138-43370941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr5:44312358-44312158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr5:57556086-57556281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 141

               
               
               Conread position:28-223
               
               
               Cow position:chr5:64555586-64555784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr5:2240934-2240738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 167

               
               
               Conread position:28-224
               
               
               Cow position:chr5:33696399-33696600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr5:58756349-58756147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr5:60212642-60212844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-229
               
               
               Cow position:chr5:53055504-53055300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:29-200
               
               
               Cow position:chr5:67679237-67679410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-204
               
               
               Cow position:chr5:43858361-43858186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):36, 14

               
               
               Conread position:29-217
               
               
               Cow position:chr5:40097654-40097845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:29-220
               
               
               Cow position:chr5:56563813-56563997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 22

               
               
               Conread position:32-191
               
               
               Cow position:chr5:34787635-34787792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 92

               
               
               Conread position:32-200
               
               
               Cow position:chr5:60952721-60952891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-208
               
               
               Cow position:chr5:55943655-55943484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):33, 74

               
               
               Conread position:32-217
               
               
               Cow position:chr5:40122549-40122364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 161

               
               
               Conread position:32-218
               
               
               Cow position:chr5:48819334-48819522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:32-223
               
               
               Cow position:chr5:20436921-20437111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 176

               
               
               Conread position:33-192
               
               
               Cow position:chr5:25597894-25598051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 79

               
               
               Conread position:33-217
               
               
               Cow position:chr5:61771181-61771368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:35-199
               
               
               Cow position:chr5:51800547-51800382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):10, 17

               
               
               Conread position:35-202
               
               
               Cow position:chr5:64140602-64140768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):30, 79

               
               
               Conread position:35-204
               
               
               Cow position:chr5:32394663-32394835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:35-218
               
               
               Cow position:chr5:47220552-47220740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):30, 165

               
               
               Conread position:35-221
               
               
               Cow position:chr5:57447602-57447416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):30, 160

               
               
               Conread position:35-225
               
               
               Cow position:chr5:28881628-28881423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-183
               
               
               Cow position:chr5:50525590-50525732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 59

               
               
               Conread position:36-198
               
               
               Cow position:chr5:63939996-63939831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):30, 14

               
               
               Conread position:36-204
               
               
               Cow position:chr5:17826250-17826419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 36

               
               
               Conread position:36-204
               
               
               Cow position:chr5:26894654-26894479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr5:37919798-37919628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr5:44196864-44196697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:36-204
               
               
               Cow position:chr5:62996022-62996191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 162

               
               
               Conread position:36-205
               
               
               Cow position:chr5:43839934-43839763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-208
               
               
               Cow position:chr5:26149099-26149272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:36-213
               
               
               Cow position:chr5:26133032-26132853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-214
               
               
               Cow position:chr5:31648484-31648658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:36-214
               
               
               Cow position:chr5:45845626-45845449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 59

               
               
               Conread position:36-214
               
               
               Cow position:chr5:59662993-59662811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:36-214
               
               
               Cow position:chr5:69333564-69333744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-215
               
               
               Cow position:chr5:22667136-22667311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):28, 91

               
               
               Conread position:36-216
               
               
               Cow position:chr5:17987829-17987648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-216
               
               
               Cow position:chr5:38820596-38820414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-216
               
               
               Cow position:chr5:69383320-69383499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 63

               
               
               Conread position:36-217
               
               
               Cow position:chr5:56881408-56881593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-219
               
               
               Cow position:chr5:17835093-17834909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):170, 0

               
               
               Conread position:36-219
               
               
               Cow position:chr5:60210078-60209897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):30, 90

               
               
               Conread position:36-223
               
               
               Cow position:chr5:32975823-32976014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 135

               
               
               Conread position:36-223
               
               
               Cow position:chr5:40637366-40637552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-224
               
               
               Cow position:chr5:9024248-9024053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-226
               
               
               Cow position:chr5:270035-269841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-232
               
               
               Cow position:chr5:19972939-19972739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:37-217
               
               
               Cow position:chr5:21721405-21721231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):5, 89

               
               
               Conread position:37-224
               
               
               Cow position:chr5:15770390-15770197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:38-214
               
               
               Cow position:chr5:46710648-46710824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 160

               
               
               Conread position:38-215
               
               
               Cow position:chr5:46715548-46715725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):27, 160

               
               
               Conread position:38-219
               
               
               Cow position:chr5:58232205-58232385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 68

               
               
               Conread position:38-221
               
               
               Cow position:chr5:56433948-56434133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 74

               
               
               Conread position:39-189
               
               
               Cow position:chr5:17063013-17062861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:39-191
               
               
               Cow position:chr5:38079438-38079594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):28, 56

               
               
               Conread position:39-199
               
               
               Cow position:chr5:14167910-14168073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 159

               
               
               Conread position:39-205
               
               
               Cow position:chr5:53779223-53779392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 77

               
               
               Conread position:39-208
               
               
               Cow position:chr5:46063565-46063730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):28, 110

               
               
               Conread position:39-214
               
               
               Cow position:chr5:30796905-30796728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 72

               
               
               Conread position:39-217
               
               
               Cow position:chr5:73424613-73424430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:39-240
               
               
               Cow position:chr5:36370347-36370542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 67

               
               
               Conread position:40-195
               
               
               Cow position:chr5:60761675-60761518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-204
               
               
               Cow position:chr5:61201828-61201994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-213
               
               
               Cow position:chr5:36650622-36650799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-214
               
               
               Cow position:chr5:12504721-12504551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:40-214
               
               
               Cow position:chr5:46755201-46755369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 54

               
               
               Conread position:40-217
               
               
               Cow position:chr5:50101305-50101132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:40-223
               
               
               Cow position:chr5:24108991-24108806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-225
               
               
               Cow position:chr5:62341097-62341283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):25, 127

               
               
               Conread position:41-185
               
               
               Cow position:chr5:54753181-54753035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:41-199
               
               
               Cow position:chr5:20126979-20127135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 70

               
               
               Conread position:41-199
               
               
               Cow position:chr5:75116503-75116342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:41-223
               
               
               Cow position:chr5:23528444-23528258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:41-223
               
               
               Cow position:chr5:58237380-58237204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 123

               
               
               Conread position:41-228
               
               
               Cow position:chr5:44901579-44901777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:42-229
               
               
               Cow position:chr5:53825043-53824858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 72

               
               
               Conread position:42-240
               
               
               Cow position:chr5:42321179-42320981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):24, 176

               
               
               Conread position:43-213
               
               
               Cow position:chr5:12562683-12562520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:45-214
               
               
               Cow position:chr5:58487449-58487615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):20, 70

               
               
               Conread position:50-197
               
               
               Cow position:chr5:9487006-9486857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-216
               
               
               Cow position:chr5:1678667-1678834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 54

               
               
               Conread position:50-218
               
               
               Cow position:chr5:43815738-43815571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 56

               
               
               Conread position:50-218
               
               
               Cow position:chr5:54875615-54875448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:50-218
               
               
               Cow position:chr5:56624438-56624267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-220
               
               
               Cow position:chr5:52001544-52001374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 113

               
               
               Conread position:50-225
               
               
               Cow position:chr5:4728153-4728317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 66

               
               
               Conread position:50-225
               
               
               Cow position:chr5:35989840-35990014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:51-229
               
               
               Cow position:chr5:63068643-63068468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):14, 147

               
               
               Conread position:52-218
               
               
               Cow position:chr5:3627096-3626935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 38

               
               
               Conread position:54-207
               
               
               Cow position:chr5:40740244-40740090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:58-191
               
               
               Cow position:chr5:54555103-54554965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:58-214
               
               
               Cow position:chr5:7676068-7675914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):8, 54

               
               
               Conread position:58-219
               
               
               Cow position:chr5:74049911-74050068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):9, 57

               
               
               Conread position:58-223
               
               
               Cow position:chr5:75712051-75711882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):9, 37

               
               
               Conread position:61-234
               
               
               Cow position:chr5:52125303-52125130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):140, 100

               
               
               Conread position:62-185
               
               
               Cow position:chr5:57630413-57630289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 110

               
               
               Conread position:62-192
               
               
               Cow position:chr5:2332039-2331909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:62-199
               
               
               Cow position:chr5:41639503-41639366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr5:47726974-47727109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:62-203
               
               
               Cow position:chr5:44868450-44868587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr5:63763757-63763900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:62-208
               
               
               Cow position:chr5:55749944-55749800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:62-211
               
               
               Cow position:chr5:6962009-6962157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-211
               
               
               Cow position:chr5:12566450-12566303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:62-212
               
               
               Cow position:chr5:74980402-74980550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr5:61593359-61593506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr5:62751069-62750916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr5:53554846-53554694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:62-217
               
               
               Cow position:chr5:65760442-65760288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):132, 25

               
               
               Conread position:62-218
               
               
               Cow position:chr5:55949586-55949433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr5:59395755-59395914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr5:51012092-51012248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr5:64060539-64060693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr5:1178047-1178202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):140, 60

               
               
               Conread position:62-220
               
               
               Cow position:chr5:40152578-40152737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr5:56643160-56643319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):79, 59

               
               
               Conread position:62-222
               
               
               Cow position:chr5:6176569-6176403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:62-222
               
               
               Cow position:chr5:25446978-25447138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 29

               
               
               Conread position:62-223
               
               
               Cow position:chr5:59873321-59873166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr5:70346394-70346554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 110

               
               
               Conread position:62-226
               
               
               Cow position:chr5:56494210-56494042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 159

               
               
               Conread position:62-232
               
               
               Cow position:chr5:45854590-45854763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:63-207
               
               
               Cow position:chr5:55942285-55942140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:63-208
               
               
               Cow position:chr5:14419916-14419780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:63-213
               
               
               Cow position:chr5:11303198-11303344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):132, 21

               
               
               Conread position:63-216
               
               
               Cow position:chr5:6876872-6876718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 53

               
               
               Conread position:63-216
               
               
               Cow position:chr5:22210978-22210830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):141, 51

               
               
               Conread position:63-219
               
               
               Cow position:chr5:52153015-52152861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:63-220
               
               
               Cow position:chr5:18578986-18579137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):17, 32

               
               
               Conread position:63-220
               
               
               Cow position:chr5:46512675-46512517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):58, 101

               
               
               Conread position:63-224
               
               
               Cow position:chr5:28660324-28660486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):125, 52

               
               
               Conread position:64-197
               
               
               Cow position:chr5:54712975-54712842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-213
               
               
               Cow position:chr5:37572463-37572316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:65-215
               
               
               Cow position:chr5:34193235-34193383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:65-221
               
               
               Cow position:chr5:62520335-62520488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:65-223
               
               
               Cow position:chr5:74658759-74658918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:66-223
               
               
               Cow position:chr5:25940846-25940687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:66-223
               
               
               Cow position:chr5:35235592-35235434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):147, 128

               
               
               Conread position:67-216
               
               
               Cow position:chr5:44666263-44666412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):135, 112

               
               
               Conread position:68-192
               
               
               Cow position:chr5:50703950-50703826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-213
               
               
               Cow position:chr5:44582670-44582522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 131

               
               
               Conread position:68-223
               
               
               Cow position:chr5:43434905-43434749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:69-220
               
               
               Cow position:chr5:1122197-1122349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:71-213
               
               
               Cow position:chr5:55414334-55414199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:72-213
               
               
               Cow position:chr5:52032206-52032068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:73-191
               
               
               Cow position:chr5:55342334-55342452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:75-217
               
               
               Cow position:chr5:74690148-74690010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:75-223
               
               
               Cow position:chr5:42928506-42928360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:76-199
               
               
               Cow position:chr5:13874134-13874009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:77-218
               
               
               Cow position:chr5:62543947-62544081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:79-206
               
               
               Cow position:chr5:13471218-13471344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:80-204
               
               
               Cow position:chr5:15413207-15413331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:80-220
               
               
               Cow position:chr5:56428463-56428322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:80-236
               
               
               Cow position:chr5:1147425-1147266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:82-184
               
               
               Cow position:chr5:55268620-55268722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:83
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-186
               
               
               Cow position:chr5:59517145-59517043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:82-220
               
               
               Cow position:chr5:32672722-32672583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:82-220
               
               
               Cow position:chr5:45337308-45337171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:82-228
               
               
               Cow position:chr5:72867163-72867306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:85-199
               
               
               Cow position:chr5:20387269-20387383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-207
               
               
               Cow position:chr5:47870936-47870820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:85-214
               
               
               Cow position:chr5:17254108-17253985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:85-215
               
               
               Cow position:chr5:32086910-32086778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:85-217
               
               
               Cow position:chr5:17039470-17039343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:88-220
               
               
               Cow position:chr5:25677177-25677305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:89-220
               
               
               Cow position:chr5:56578819-56578947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:91-220
               
               
               Cow position:chr5:67634392-67634262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:92-197
               
               
               Cow position:chr5:3492307-3492411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:92-222
               
               
               Cow position:chr5:41757734-41757864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:93-218
               
               
               Cow position:chr5:27011303-27011430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:94-207
               
               
               Cow position:chr5:28719205-28719316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:95-199
               
               
               Cow position:chr5:20211968-20211864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:95-218
               
               
               Cow position:chr5:44438588-44438466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:98-213
               
               
               Cow position:chr5:17026322-17026435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:102-223
               
               
               Cow position:chr5:17644217-17644095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:111-223
               
               
               Cow position:chr5:54374956-54375067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:119-219
               
               
               Cow position:chr5:40167883-40167984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:87
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:1-185
               
               
               Cow position:chr6:14471407-14471592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 24

               
               
               Conread position:1-194
               
               
               Cow position:chr6:30825724-30825541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:1-203
               
               
               Cow position:chr6:34569449-34569659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-204
               
               
               Cow position:chr6:15447156-15446946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr6:54127769-54127575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):13, 25

               
               
               Conread position:1-206
               
               
               Cow position:chr6:61515146-61514949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 64

               
               
               Conread position:1-208
               
               
               Cow position:chr6:60819555-60819765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 144

               
               
               Conread position:1-215
               
               
               Cow position:chr6:15058418-15058631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):12, 133

               
               
               Conread position:1-220
               
               
               Cow position:chr6:40032233-40032440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 121

               
               
               Conread position:1-232
               
               
               Cow position:chr6:5330454-5330690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:1-240
               
               
               Cow position:chr6:16380586-16380829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:175
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):13, 205

               
               
               Conread position:2-213
               
               
               Cow position:chr6:21184182-21183968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:3-162
               
               
               Cow position:chr6:36189738-36189904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-188
               
               
               Cow position:chr6:41375812-41376000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):23, 115

               
               
               Conread position:3-199
               
               
               Cow position:chr6:66433990-66434195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr6:41014939-41014732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 203

               
               
               Conread position:3-201
               
               
               Cow position:chr6:58304454-58304655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:3-204
               
               
               Cow position:chr6:46274086-46273889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 50

               
               
               Conread position:3-204
               
               
               Cow position:chr6:62078962-62079164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:3-207
               
               
               Cow position:chr6:12669140-12669346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:3-213
               
               
               Cow position:chr6:56986608-56986393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-216
               
               
               Cow position:chr6:32126096-32126311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 128

               
               
               Conread position:3-218
               
               
               Cow position:chr6:17313775-17313996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 201

               
               
               Conread position:3-218
               
               
               Cow position:chr6:32453425-32453650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):19, 215

               
               
               Conread position:3-218
               
               
               Cow position:chr6:33302439-33302655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):17, 125

               
               
               Conread position:3-219
               
               
               Cow position:chr6:15974478-15974263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):13, 18

               
               
               Conread position:3-220
               
               
               Cow position:chr6:6063254-6063032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 109

               
               
               Conread position:3-223
               
               
               Cow position:chr6:8365851-8366084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr6:45921174-45920957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:3-223
               
               
               Cow position:chr6:50269643-50269415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:3-224
               
               
               Cow position:chr6:51553181-51553413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:3-225
               
               
               Cow position:chr6:6201464-6201699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 222

               
               
               Conread position:4-164
               
               
               Cow position:chr6:69153454-69153618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:4-183
               
               
               Cow position:chr6:61681118-61681303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:4-187
               
               
               Cow position:chr6:27219220-27219395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):62, 20

               
               
               Conread position:4-192
               
               
               Cow position:chr6:15242881-15243073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 53

               
               
               Conread position:4-192
               
               
               Cow position:chr6:61884126-61883939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):61, 20

               
               
               Conread position:4-199
               
               
               Cow position:chr6:6060531-6060333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 119

               
               
               Conread position:4-199
               
               
               Cow position:chr6:21467223-21467023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:4-204
               
               
               Cow position:chr6:50771318-50771115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):23, 176

               
               
               Conread position:4-204
               
               
               Cow position:chr6:53758248-53758047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:4-204
               
               
               Cow position:chr6:62539546-62539362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:4-208
               
               
               Cow position:chr6:65264501-65264301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 124

               
               
               Conread position:4-211
               
               
               Cow position:chr6:42483456-42483669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:4-212
               
               
               Cow position:chr6:26408458-26408251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):58, 191

               
               
               Conread position:4-213
               
               
               Cow position:chr6:14914189-14913979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):7, 15

               
               
               Conread position:4-213
               
               
               Cow position:chr6:43787870-43787652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):20, 57

               
               
               Conread position:4-214
               
               
               Cow position:chr6:66947777-66947563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:4-216
               
               
               Cow position:chr6:13565135-13565342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 12

               
               
               Conread position:4-217
               
               
               Cow position:chr6:50467176-50467396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 207

               
               
               Conread position:4-218
               
               
               Cow position:chr6:16700302-16700521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):199, 21

               
               
               Conread position:4-219
               
               
               Cow position:chr6:24781514-24781290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 71

               
               
               Conread position:4-219
               
               
               Cow position:chr6:47958856-47959063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):22, 104

               
               
               Conread position:4-223
               
               
               Cow position:chr6:64431978-64432197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 126

               
               
               Conread position:4-224
               
               
               Cow position:chr6:62669906-62670135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):18, 194

               
               
               Conread position:4-225
               
               
               Cow position:chr6:37395354-37395139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):61, 119

               
               
               Conread position:4-229
               
               
               Cow position:chr6:10225606-10225377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:5-204
               
               
               Cow position:chr6:10163716-10163920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):60, 13

               
               
               Conread position:5-220
               
               
               Cow position:chr6:44544102-44543887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:170
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):15, 107

               
               
               Conread position:5-222
               
               
               Cow position:chr6:57546179-57545965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):62, 14

               
               
               Conread position:6-201
               
               
               Cow position:chr6:13742035-13742228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):7, 54

               
               
               Conread position:6-204
               
               
               Cow position:chr6:28148299-28148508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:6-212
               
               
               Cow position:chr6:19563437-19563224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-217
               
               
               Cow position:chr6:7801347-7801143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:6-219
               
               
               Cow position:chr6:34475516-34475299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 113

               
               
               Conread position:6-219
               
               
               Cow position:chr6:44540855-44541065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:6-221
               
               
               Cow position:chr6:2584985-2585202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):19, 117

               
               
               Conread position:7-159
               
               
               Cow position:chr6:31865144-31865296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 6

               
               
               Conread position:7-201
               
               
               Cow position:chr6:55919885-55919690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):58, 189

               
               
               Conread position:7-216
               
               
               Cow position:chr6:49685868-49686078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:8-201
               
               
               Cow position:chr6:8369469-8369667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:8-203
               
               
               Cow position:chr6:38441222-38441425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:8-211
               
               
               Cow position:chr6:48435881-48436083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):57, 91

               
               
               Conread position:9-223
               
               
               Cow position:chr6:3952566-3952788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):6, 41

               
               
               Conread position:10-191
               
               
               Cow position:chr6:19446300-19446486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:10-195
               
               
               Cow position:chr6:19695856-19696046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 45

               
               
               Conread position:10-201
               
               
               Cow position:chr6:24651928-24651739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 25

               
               
               Conread position:10-212
               
               
               Cow position:chr6:36225155-36225363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:10-221
               
               
               Cow position:chr6:66590131-66590335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):153, 44

               
               
               Conread position:11-223
               
               
               Cow position:chr6:29853017-29852789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:11-224
               
               
               Cow position:chr6:66293538-66293746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 5

               
               
               Conread position:12-207
               
               
               Cow position:chr6:44078567-44078762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:12-216
               
               
               Cow position:chr6:33450921-33450720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):14, 84

               
               
               Conread position:13-225
               
               
               Cow position:chr6:16411664-16411878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):11, 200

               
               
               Conread position:14-220
               
               
               Cow position:chr6:36809147-36808941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):51, 7

               
               
               Conread position:16-205
               
               
               Cow position:chr6:62437474-62437662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:16-207
               
               
               Cow position:chr6:56582001-56581805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):23, 9

               
               
               Conread position:17-213
               
               
               Cow position:chr6:31847181-31846990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 109

               
               
               Conread position:19-166
               
               
               Cow position:chr6:21514546-21514397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:19-182
               
               
               Cow position:chr6:32336092-32336263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:19-183
               
               
               Cow position:chr6:65535109-65534943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-185
               
               
               Cow position:chr6:48379552-48379384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-186
               
               
               Cow position:chr6:8161626-8161457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-198
               
               
               Cow position:chr6:10039785-10039966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-199
               
               
               Cow position:chr6:37149251-37149423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):47, 97

               
               
               Conread position:19-211
               
               
               Cow position:chr6:19996676-19996866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 68

               
               
               Conread position:19-212
               
               
               Cow position:chr6:51542960-51543155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):152, 180

               
               
               Conread position:19-214
               
               
               Cow position:chr6:45980125-45979928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 180

               
               
               Conread position:19-214
               
               
               Cow position:chr6:67728437-67728635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-215
               
               
               Cow position:chr6:43134877-43134685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):44, 69

               
               
               Conread position:19-216
               
               
               Cow position:chr6:27888413-27888602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):44, 90

               
               
               Conread position:19-216
               
               
               Cow position:chr6:57072484-57072678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:19-219
               
               
               Cow position:chr6:36163805-36164006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:19-220
               
               
               Cow position:chr6:26638449-26638653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 176

               
               
               Conread position:19-224
               
               
               Cow position:chr6:16627799-16627993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):46, 10

               
               
               Conread position:19-225
               
               
               Cow position:chr6:43906622-43906412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-225
               
               
               Cow position:chr6:47782923-47783139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-234
               
               
               Cow position:chr6:10176240-10176023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:20-216
               
               
               Cow position:chr6:19045686-19045887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):46, 5

               
               
               Conread position:20-217
               
               
               Cow position:chr6:35727913-35728106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:20-218
               
               
               Cow position:chr6:44123393-44123582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):46, 7

               
               
               Conread position:21-214
               
               
               Cow position:chr6:14150316-14150125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):42, 141

               
               
               Conread position:22-225
               
               
               Cow position:chr6:58666756-58666550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:24-200
               
               
               Cow position:chr6:7103174-7102997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 95

               
               
               Conread position:24-204
               
               
               Cow position:chr6:55060929-55061115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):41, 177

               
               
               Conread position:24-204
               
               
               Cow position:chr6:63251856-63251676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 49

               
               
               Conread position:24-205
               
               
               Cow position:chr6:16765329-16765152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-207
               
               
               Cow position:chr6:66259796-66259986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:24-208
               
               
               Cow position:chr6:39414889-39415072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 84

               
               
               Conread position:24-214
               
               
               Cow position:chr6:67187751-67187934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):39, 97

               
               
               Conread position:24-225
               
               
               Cow position:chr6:28852040-28852245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr6:34380747-34380589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 85

               
               
               Conread position:25-185
               
               
               Cow position:chr6:47022628-47022786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:25-185
               
               
               Cow position:chr6:51121001-51120839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):17, 48

               
               
               Conread position:25-185
               
               
               Cow position:chr6:61644791-61644629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-186
               
               
               Cow position:chr6:57079491-57079654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-197
               
               
               Cow position:chr6:26054837-26054661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-197
               
               
               Cow position:chr6:30895924-30895753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-197
               
               
               Cow position:chr6:36938935-36939113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-197
               
               
               Cow position:chr6:50504524-50504695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:25-199
               
               
               Cow position:chr6:21535107-21535281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:25-200
               
               
               Cow position:chr6:15937787-15937610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-203
               
               
               Cow position:chr6:50090710-50090889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr6:35171673-35171860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 33

               
               
               Conread position:25-204
               
               
               Cow position:chr6:45159990-45159810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr6:67574456-67574634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-204
               
               
               Cow position:chr6:68246766-68246585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:25-205
               
               
               Cow position:chr6:53765823-53765646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:25-208
               
               
               Cow position:chr6:57467664-57467849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-209
               
               
               Cow position:chr6:53811650-53811836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 174

               
               
               Conread position:25-213
               
               
               Cow position:chr6:4468836-4469021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:25-214
               
               
               Cow position:chr6:18776318-18776502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-214
               
               
               Cow position:chr6:46558125-46558308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:25-214
               
               
               Cow position:chr6:47245848-47246036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:25-214
               
               
               Cow position:chr6:48448892-48449071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr6:47305409-47305598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 56

               
               
               Conread position:25-215
               
               
               Cow position:chr6:57299826-57300024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):33, 179

               
               
               Conread position:25-216
               
               
               Cow position:chr6:28088980-28088788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):41, 74

               
               
               Conread position:25-216
               
               
               Cow position:chr6:55404979-55405170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-218
               
               
               Cow position:chr6:33960582-33960391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:25-218
               
               
               Cow position:chr6:37692818-37693009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 54

               
               
               Conread position:25-218
               
               
               Cow position:chr6:51530120-51529930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):40, 140

               
               
               Conread position:25-219
               
               
               Cow position:chr6:8688779-8688591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:25-219
               
               
               Cow position:chr6:28562101-28561910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:25-219
               
               
               Cow position:chr6:30983587-30983775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:25-219
               
               
               Cow position:chr6:67543990-67543798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 164

               
               
               Conread position:25-220
               
               
               Cow position:chr6:44566492-44566686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:25-220
               
               
               Cow position:chr6:54854318-54854508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:25-221
               
               
               Cow position:chr6:35181189-35180990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-222
               
               
               Cow position:chr6:21475795-21475989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:25-223
               
               
               Cow position:chr6:5095474-5095278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:25-223
               
               
               Cow position:chr6:6614689-6614888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 49

               
               
               Conread position:25-223
               
               
               Cow position:chr6:13367353-13367548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:25-223
               
               
               Cow position:chr6:23025033-23024834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 187

               
               
               Conread position:25-223
               
               
               Cow position:chr6:24183491-24183290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr6:62224489-62224687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:25-224
               
               
               Cow position:chr6:33290036-33290238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 157

               
               
               Conread position:25-224
               
               
               Cow position:chr6:53932778-53932577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):39, 14

               
               
               Conread position:25-225
               
               
               Cow position:chr6:21052382-21052182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 172

               
               
               Conread position:25-233
               
               
               Cow position:chr6:45388394-45388594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 46

               
               
               Conread position:25-235
               
               
               Cow position:chr6:42728713-42728922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 65

               
               
               Conread position:25-240
               
               
               Cow position:chr6:35985069-35984852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:27-192
               
               
               Cow position:chr6:19401921-19402079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:28-153
               
               
               Cow position:chr6:58076464-58076591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-174
               
               
               Cow position:chr6:8125397-8125545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-177
               
               
               Cow position:chr6:35842729-35842879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:28-177
               
               
               Cow position:chr6:52412930-52413081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-183
               
               
               Cow position:chr6:51835470-51835623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:28-185
               
               
               Cow position:chr6:16261849-16262008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-192
               
               
               Cow position:chr6:21083470-21083307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 103

               
               
               Conread position:28-199
               
               
               Cow position:chr6:59297123-59297286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-200
               
               
               Cow position:chr6:22204956-22204782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr6:16270930-16270752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr6:23058282-23058460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr6:24339353-24339535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):17, 73

               
               
               Conread position:28-204
               
               
               Cow position:chr6:24903507-24903331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 167

               
               
               Conread position:28-204
               
               
               Cow position:chr6:55417457-55417287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 88

               
               
               Conread position:28-204
               
               
               Cow position:chr6:57089274-57089450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 84

               
               
               Conread position:28-204
               
               
               Cow position:chr6:59620724-59620902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr6:62724626-62724804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-207
               
               
               Cow position:chr6:42567563-42567744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 169

               
               
               Conread position:28-213
               
               
               Cow position:chr6:13687741-13687561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):56, 70

               
               
               Conread position:28-214
               
               
               Cow position:chr6:54365257-54365075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-215
               
               
               Cow position:chr6:24110352-24110542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr6:2078744-2078560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):38, 84

               
               
               Conread position:28-216
               
               
               Cow position:chr6:58697561-58697372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:28-217
               
               
               Cow position:chr6:66363164-66362972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr6:48892289-48892092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr6:5845100-5844904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr6:14263820-14263623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):18, 76

               
               
               Conread position:28-220
               
               
               Cow position:chr6:21293423-21293233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:28-220
               
               
               Cow position:chr6:54679598-54679795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr6:58363641-58363446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr6:47648165-47647971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 59

               
               
               Conread position:28-223
               
               
               Cow position:chr6:12761350-12761546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 30

               
               
               Conread position:28-223
               
               
               Cow position:chr6:15587524-15587326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr6:17704902-17705099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr6:18440407-18440213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):35, 140

               
               
               Conread position:28-223
               
               
               Cow position:chr6:55548463-55548268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:28-223
               
               
               Cow position:chr6:58200188-58200383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 145

               
               
               Conread position:28-224
               
               
               Cow position:chr6:6227667-6227468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr6:47778946-47779144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr6:56061731-56061934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-229
               
               
               Cow position:chr6:27636385-27636590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 188

               
               
               Conread position:28-230
               
               
               Cow position:chr6:68644060-68644266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:28-232
               
               
               Cow position:chr6:2607677-2607886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 59

               
               
               Conread position:29-204
               
               
               Cow position:chr6:34463516-34463344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 97

               
               
               Conread position:29-217
               
               
               Cow position:chr6:51666266-51666075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-218
               
               
               Cow position:chr6:53732053-53732245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):36, 161

               
               
               Conread position:29-218
               
               
               Cow position:chr6:55044570-55044382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):42, 61

               
               
               Conread position:29-219
               
               
               Cow position:chr6:21004748-21004939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):36, 167

               
               
               Conread position:29-220
               
               
               Cow position:chr6:55297023-55296832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 169

               
               
               Conread position:29-220
               
               
               Cow position:chr6:66302534-66302343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):36, 90

               
               
               Conread position:29-221
               
               
               Cow position:chr6:22876859-22876664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-222
               
               
               Cow position:chr6:21399684-21399489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 130

               
               
               Conread position:32-204
               
               
               Cow position:chr6:7291390-7291557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):35, 82

               
               
               Conread position:32-217
               
               
               Cow position:chr6:3936857-3937048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:32-218
               
               
               Cow position:chr6:52478336-52478150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):35, 95

               
               
               Conread position:35-186
               
               
               Cow position:chr6:45094650-45094806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-192
               
               
               Cow position:chr6:54820909-54821068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:35-199
               
               
               Cow position:chr6:29485161-29485324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:35-204
               
               
               Cow position:chr6:19936492-19936323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):30, 55

               
               
               Conread position:35-220
               
               
               Cow position:chr6:8562797-8562977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):8, 76

               
               
               Conread position:35-221
               
               
               Cow position:chr6:47150897-47151080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:36-186
               
               
               Cow position:chr6:38853580-38853428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-197
               
               
               Cow position:chr6:50883597-50883440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:36-203
               
               
               Cow position:chr6:17404638-17404806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 11

               
               
               Conread position:36-204
               
               
               Cow position:chr6:6724584-6724755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr6:16387628-16387458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr6:18447439-18447269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr6:21175416-21175580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 81

               
               
               Conread position:36-204
               
               
               Cow position:chr6:31471154-31471325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr6:43345363-43345194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 78

               
               
               Conread position:36-204
               
               
               Cow position:chr6:54430909-54431082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):113, 29

               
               
               Conread position:36-212
               
               
               Cow position:chr6:29851447-29851622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:36-216
               
               
               Cow position:chr6:16502967-16502784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):12, 16

               
               
               Conread position:36-216
               
               
               Cow position:chr6:24536453-24536267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:36-217
               
               
               Cow position:chr6:55517954-55518135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:36-219
               
               
               Cow position:chr6:56022476-56022291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr6:48893853-48893665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-222
               
               
               Cow position:chr6:7539652-7539838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 75

               
               
               Conread position:36-223
               
               
               Cow position:chr6:64429117-64428929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):30, 15

               
               
               Conread position:36-225
               
               
               Cow position:chr6:1090659-1090847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):31, 167

               
               
               Conread position:36-228
               
               
               Cow position:chr6:8731492-8731687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:36-233
               
               
               Cow position:chr6:16137693-16137498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):6, 164

               
               
               Conread position:39-197
               
               
               Cow position:chr6:32006373-32006217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 85

               
               
               Conread position:39-199
               
               
               Cow position:chr6:17997238-17997076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 100

               
               
               Conread position:39-204
               
               
               Cow position:chr6:4760073-4760239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:39-204
               
               
               Cow position:chr6:59101240-59101073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:39-207
               
               
               Cow position:chr6:29496074-29496239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):26, 129

               
               
               Conread position:39-219
               
               
               Cow position:chr6:28559619-28559801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 74

               
               
               Conread position:39-219
               
               
               Cow position:chr6:54840426-54840239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:39-223
               
               
               Cow position:chr6:69374751-69374571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-236
               
               
               Cow position:chr6:4049071-4048873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):27, 153

               
               
               Conread position:40-185
               
               
               Cow position:chr6:47450839-47450692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-197
               
               
               Cow position:chr6:45471507-45471347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-204
               
               
               Cow position:chr6:14152808-14152645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 116

               
               
               Conread position:40-218
               
               
               Cow position:chr6:47790717-47790538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 64

               
               
               Conread position:40-219
               
               
               Cow position:chr6:44474642-44474825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-221
               
               
               Cow position:chr6:30123087-30122905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 152

               
               
               Conread position:40-222
               
               
               Cow position:chr6:50863027-50863212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-223
               
               
               Cow position:chr6:53145600-53145416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 158

               
               
               Conread position:40-223
               
               
               Cow position:chr6:62805725-62805908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 158

               
               
               Conread position:40-224
               
               
               Cow position:chr6:59687730-59687541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-214
               
               
               Cow position:chr6:60144114-60143945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):26, 51

               
               
               Conread position:41-234
               
               
               Cow position:chr6:8640763-8640569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 171

               
               
               Conread position:42-213
               
               
               Cow position:chr6:52430937-52430765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 156

               
               
               Conread position:43-216
               
               
               Cow position:chr6:40833929-40833762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):22, 73

               
               
               Conread position:44-186
               
               
               Cow position:chr6:19754994-19754850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:50-192
               
               
               Cow position:chr6:56799800-56799657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:50-197
               
               
               Cow position:chr6:55945871-55945717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-201
               
               
               Cow position:chr6:57935480-57935334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 63

               
               
               Conread position:50-205
               
               
               Cow position:chr6:10399817-10399662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):72, 29

               
               
               Conread position:50-213
               
               
               Cow position:chr6:59660847-59660681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:50-214
               
               
               Cow position:chr6:24468303-24468146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):15, 42

               
               
               Conread position:50-222
               
               
               Cow position:chr6:15111749-15111573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 149

               
               
               Conread position:50-224
               
               
               Cow position:chr6:26764735-26764554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-226
               
               
               Cow position:chr6:54846186-54846007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:52-212
               
               
               Cow position:chr6:49824999-49824837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):14, 48

               
               
               Conread position:53-213
               
               
               Cow position:chr6:24514447-24514277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:53-214
               
               
               Cow position:chr6:53138841-53138682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:54-208
               
               
               Cow position:chr6:50682205-50682049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:56-213
               
               
               Cow position:chr6:57248614-57248770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):10, 29

               
               
               Conread position:56-214
               
               
               Cow position:chr6:67810884-67810733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:56-225
               
               
               Cow position:chr6:21587332-21587169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):10, 73

               
               
               Conread position:57-212
               
               
               Cow position:chr6:60088377-60088221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 47

               
               
               Conread position:60-204
               
               
               Cow position:chr6:37827844-37827703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):41, 28

               
               
               Conread position:62-191
               
               
               Cow position:chr6:17172932-17173059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:62-199
               
               
               Cow position:chr6:50445011-50444874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr6:13097294-13097156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):53, 40

               
               
               Conread position:62-201
               
               
               Cow position:chr6:67374570-67374434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:62-207
               
               
               Cow position:chr6:23381562-23381417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr6:47540736-47540587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr6:30688405-30688255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr6:61567977-61568131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr6:31928743-31928898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr6:35775588-35775744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-217
               
               
               Cow position:chr6:50451946-50452102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 136

               
               
               Conread position:62-218
               
               
               Cow position:chr6:41244809-41244650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:62-218
               
               
               Cow position:chr6:54208520-54208364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr6:6731520-6731678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr6:11246874-11247030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):135, 35

               
               
               Conread position:62-219
               
               
               Cow position:chr6:16016140-16016296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr6:8187083-8186929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr6:224635-224478 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):130, 72

               
               
               Conread position:62-221
               
               
               Cow position:chr6:22850148-22849990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-221
               
               
               Cow position:chr6:48584409-48584250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-222
               
               
               Cow position:chr6:55196319-55196479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:62-223
               
               
               Cow position:chr6:54828216-54828055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):151, 134

               
               
               Conread position:62-224
               
               
               Cow position:chr6:9433197-9433036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):140, 154

               
               
               Conread position:62-224
               
               
               Cow position:chr6:51648931-51649094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):103, 99

               
               
               Conread position:62-226
               
               
               Cow position:chr6:57143590-57143431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:62-233
               
               
               Cow position:chr6:59164481-59164653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):152, 134

               
               
               Conread position:62-237
               
               
               Cow position:chr6:67211818-67211647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):141, 60

               
               
               Conread position:63-185
               
               
               Cow position:chr6:41733740-41733862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-204
               
               
               Cow position:chr6:56663994-56664143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:63-205
               
               
               Cow position:chr6:12099579-12099444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:63-219
               
               
               Cow position:chr6:55030438-55030593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 134

               
               
               Conread position:64-200
               
               
               Cow position:chr6:16042134-16041998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-204
               
               
               Cow position:chr6:34076275-34076409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:65-220
               
               
               Cow position:chr6:38550517-38550366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:66-208
               
               
               Cow position:chr6:65831471-65831612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:69-201
               
               
               Cow position:chr6:29775725-29775861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:69-217
               
               
               Cow position:chr6:52717863-52717715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-217
               
               
               Cow position:chr6:30881212-30881066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 123

               
               
               Conread position:74-214
               
               
               Cow position:chr6:33461502-33461636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:75-207
               
               
               Cow position:chr6:57280063-57279933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:75-214
               
               
               Cow position:chr6:47771848-47771989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:75-220
               
               
               Cow position:chr6:144868-145013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:77-198
               
               
               Cow position:chr6:41147341-41147459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:80-214
               
               
               Cow position:chr6:17243905-17244036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:80-216
               
               
               Cow position:chr6:59569611-59569746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 88

               
               
               Conread position:80-220
               
               
               Cow position:chr6:456827-456685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 91

               
               
               Conread position:80-220
               
               
               Cow position:chr6:51019274-51019410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:82-184
               
               
               Cow position:chr6:11894880-11894778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-213
               
               
               Cow position:chr6:16738739-16738868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:84-205
               
               
               Cow position:chr6:55764163-55764285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 65

               
               
               Conread position:85-192
               
               
               Cow position:chr6:36267126-36267234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:85-214
               
               
               Cow position:chr6:6996772-6996645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:85-214
               
               
               Cow position:chr6:12711673-12711537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):19, 119

               
               
               Conread position:86-218
               
               
               Cow position:chr6:24362167-24362036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:88-233
               
               
               Cow position:chr6:27074445-27074588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:88-236
               
               
               Cow position:chr6:19681847-19681995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:93-233
               
               
               Cow position:chr6:28620232-28620377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:95-217
               
               
               Cow position:chr6:28715114-28714990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:98-225
               
               
               Cow position:chr6:21200214-21200344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:103-207
               
               
               Cow position:chr6:26929298-26929194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:111-217
               
               
               Cow position:chr6:31231137-31231035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:88
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:1-184
               
               
               Cow position:chr7:39129562-39129373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:1-186
               
               
               Cow position:chr7:9161632-9161440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-199
               
               
               Cow position:chr7:50566157-50565952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):12, 201

               
               
               Conread position:1-204
               
               
               Cow position:chr7:11151427-11151222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 79

               
               
               Conread position:1-204
               
               
               Cow position:chr7:14029355-14029553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):30, 13

               
               
               Conread position:1-212
               
               
               Cow position:chr7:25195586-25195804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-220
               
               
               Cow position:chr7:13067201-13067422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 197

               
               
               Conread position:1-221
               
               
               Cow position:chr7:5052525-5052299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:2-214
               
               
               Cow position:chr7:43450588-43450802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:3-182
               
               
               Cow position:chr7:47775903-47776090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-185
               
               
               Cow position:chr7:53202754-53202944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:3-199
               
               
               Cow position:chr7:35286598-35286403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 124

               
               
               Conread position:3-201
               
               
               Cow position:chr7:43084918-43085122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:161
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):19, 53

               
               
               Conread position:3-201
               
               
               Cow position:chr7:43109496-43109292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):24, 53

               
               
               Conread position:3-201
               
               
               Cow position:chr7:53579349-53579145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 59

               
               
               Conread position:3-202
               
               
               Cow position:chr7:3159846-3160042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 98

               
               
               Conread position:3-204
               
               
               Cow position:chr7:40425270-40425061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-207
               
               
               Cow position:chr7:32774293-32774502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-212
               
               
               Cow position:chr7:53763544-53763338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):60, 21

               
               
               Conread position:3-212
               
               
               Cow position:chr7:54108823-54108612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 68

               
               
               Conread position:3-213
               
               
               Cow position:chr7:10081658-10081450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):24, 43

               
               
               Conread position:3-215
               
               
               Cow position:chr7:37753982-37753764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 192

               
               
               Conread position:3-215
               
               
               Cow position:chr7:38084360-38084576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 126

               
               
               Conread position:3-216
               
               
               Cow position:chr7:20219798-20219584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 125

               
               
               Conread position:3-217
               
               
               Cow position:chr7:63300242-63300459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):26, 202

               
               
               Conread position:3-218
               
               
               Cow position:chr7:42431902-42432139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 170

               
               
               Conread position:3-219
               
               
               Cow position:chr7:23624624-23624405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 108

               
               
               Conread position:3-219
               
               
               Cow position:chr7:38361195-38360975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):19, 200

               
               
               Conread position:3-223
               
               
               Cow position:chr7:32549365-32549139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-224
               
               
               Cow position:chr7:59438493-59438717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:3-229
               
               
               Cow position:chr7:38347806-38347573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):23, 94

               
               
               Conread position:3-229
               
               
               Cow position:chr7:44578079-44578309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):26, 168

               
               
               Conread position:3-229
               
               
               Cow position:chr7:54857386-54857618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):23, 129

               
               
               Conread position:4-191
               
               
               Cow position:chr7:39947200-39947012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:4-192
               
               
               Cow position:chr7:33385965-33386152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:4-199
               
               
               Cow position:chr7:25860152-25859959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):63, 19

               
               
               Conread position:4-199
               
               
               Cow position:chr7:48721856-48721662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 91

               
               
               Conread position:4-200
               
               
               Cow position:chr7:8089208-8089406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 118

               
               
               Conread position:4-201
               
               
               Cow position:chr7:55085699-55085911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:4-204
               
               
               Cow position:chr7:249460-249255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:4-204
               
               
               Cow position:chr7:11995142-11994932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:4-204
               
               
               Cow position:chr7:19797885-19797681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):22, 190

               
               
               Conread position:4-204
               
               
               Cow position:chr7:37697844-37698056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-211
               
               
               Cow position:chr7:40414954-40414747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):34, 21

               
               
               Conread position:4-212
               
               
               Cow position:chr7:30931930-30931727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:4-218
               
               
               Cow position:chr7:51685057-51685273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):22, 166

               
               
               Conread position:4-218
               
               
               Cow position:chr7:58800212-58800432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 118

               
               
               Conread position:4-220
               
               
               Cow position:chr7:54513356-54513143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-222
               
               
               Cow position:chr7:23636749-23636978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:4-223
               
               
               Cow position:chr7:10945390-10945613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:172
               
               
               Alignm E-value:9e-39
               
               
               Alignm gaps (pig, cow):22, 189

               
               
               Conread position:4-223
               
               
               Cow position:chr7:38532194-38531963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 57

               
               
               Conread position:4-224
               
               
               Cow position:chr7:10384924-10385151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:4-224
               
               
               Cow position:chr7:14519992-14519776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-233
               
               
               Cow position:chr7:59688589-59688810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):62, 21

               
               
               Conread position:4-234
               
               
               Cow position:chr7:64135424-64135195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:5-201
               
               
               Cow position:chr7:52591954-52591755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):46, 20

               
               
               Conread position:5-204
               
               
               Cow position:chr7:31170904-31170711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):62, 19

               
               
               Conread position:5-204
               
               
               Cow position:chr7:52839574-52839374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:5-220
               
               
               Cow position:chr7:46952080-46952299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:5-223
               
               
               Cow position:chr7:68857542-68857322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 194

               
               
               Conread position:6-186
               
               
               Cow position:chr7:39022161-39021977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-199
               
               
               Cow position:chr7:1761778-1761974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 45

               
               
               Conread position:6-201
               
               
               Cow position:chr7:63772098-63772296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):7, 108

               
               
               Conread position:6-202
               
               
               Cow position:chr7:21573620-21573816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 127

               
               
               Conread position:6-212
               
               
               Cow position:chr7:25263415-25263624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):19, 142

               
               
               Conread position:6-212
               
               
               Cow position:chr7:38429662-38429462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 98

               
               
               Conread position:6-214
               
               
               Cow position:chr7:44596649-44596448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):60, 7

               
               
               Conread position:6-218
               
               
               Cow position:chr7:25722621-25722410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):19, 121

               
               
               Conread position:6-218
               
               
               Cow position:chr7:42943359-42943566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):7, 90

               
               
               Conread position:8-195
               
               
               Cow position:chr7:41346984-41346790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:8-204
               
               
               Cow position:chr7:39514282-39514483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 120

               
               
               Conread position:8-204
               
               
               Cow position:chr7:39516468-39516267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):7, 120

               
               
               Conread position:8-204
               
               
               Cow position:chr7:68540551-68540348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 191

               
               
               Conread position:8-207
               
               
               Cow position:chr7:21228497-21228295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):13, 107

               
               
               Conread position:8-217
               
               
               Cow position:chr7:35779789-35779997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):17, 119

               
               
               Conread position:8-218
               
               
               Cow position:chr7:36248149-36248351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:8-220
               
               
               Cow position:chr7:55316150-55315940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):24, 119

               
               
               Conread position:8-223
               
               
               Cow position:chr7:54090541-54090754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):7, 59

               
               
               Conread position:8-225
               
               
               Cow position:chr7:34428625-34428845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 204

               
               
               Conread position:9-180
               
               
               Cow position:chr7:35754724-35754899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:9-211
               
               
               Cow position:chr7:53433672-53433877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 11

               
               
               Conread position:9-224
               
               
               Cow position:chr7:26791562-26791778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):57, 26

               
               
               Conread position:9-225
               
               
               Cow position:chr7:24796660-24796440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):24, 107

               
               
               Conread position:10-188
               
               
               Cow position:chr7:30017464-30017290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:11-211
               
               
               Cow position:chr7:42460722-42460920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):9, 5

               
               
               Conread position:11-220
               
               
               Cow position:chr7:40061395-40061188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):9, 31

               
               
               Conread position:12-205
               
               
               Cow position:chr7:18016729-18016918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 85

               
               
               Conread position:14-213
               
               
               Cow position:chr7:33805152-33805344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 15

               
               
               Conread position:16-185
               
               
               Cow position:chr7:34464420-34464583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:16-212
               
               
               Cow position:chr7:39140273-39140466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):47, 96

               
               
               Conread position:16-213
               
               
               Cow position:chr7:51039494-51039688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:17-201
               
               
               Cow position:chr7:14796332-14796138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 188

               
               
               Conread position:18-216
               
               
               Cow position:chr7:39160247-39160443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 133

               
               
               Conread position:18-221
               
               
               Cow position:chr7:4720167-4719963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:19-156
               
               
               Cow position:chr7:40710192-40710327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:19-182
               
               
               Cow position:chr7:11884217-11884057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:19-185
               
               
               Cow position:chr7:32813507-32813675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-192
               
               
               Cow position:chr7:7476049-7475870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:19-192
               
               
               Cow position:chr7:31503911-31504085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 81

               
               
               Conread position:19-203
               
               
               Cow position:chr7:8523716-8523535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-204
               
               
               Cow position:chr7:49942068-49941884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):15, 66

               
               
               Conread position:19-204
               
               
               Cow position:chr7:63834786-63834599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr7:63968131-63967935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:19-212
               
               
               Cow position:chr7:46051719-46051915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 186

               
               
               Conread position:19-214
               
               
               Cow position:chr7:35088721-35088914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):45, 176

               
               
               Conread position:19-218
               
               
               Cow position:chr7:37022992-37023202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-219
               
               
               Cow position:chr7:40308455-40308253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):48, 95

               
               
               Conread position:19-221
               
               
               Cow position:chr7:48375874-48376077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):52, 86

               
               
               Conread position:19-223
               
               
               Cow position:chr7:9816062-9816266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):46, 178

               
               
               Conread position:19-223
               
               
               Cow position:chr7:23677990-23678195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):46, 93

               
               
               Conread position:19-223
               
               
               Cow position:chr7:30154942-30154742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):46, 114

               
               
               Conread position:19-223
               
               
               Cow position:chr7:33104226-33104416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:19-223
               
               
               Cow position:chr7:52781902-52781691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 169

               
               
               Conread position:19-230
               
               
               Cow position:chr7:46823734-46823948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:8e-38
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:19-231
               
               
               Cow position:chr7:40305189-40304976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 107

               
               
               Conread position:19-232
               
               
               Cow position:chr7:20181134-20180922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 98

               
               
               Conread position:19-232
               
               
               Cow position:chr7:60121617-60121832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:19-233
               
               
               Cow position:chr7:44574286-44574496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:20-204
               
               
               Cow position:chr7:26309604-26309418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:20-218
               
               
               Cow position:chr7:68173095-68172896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):45, 178

               
               
               Conread position:22-212
               
               
               Cow position:chr7:12495052-12494867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:24-185
               
               
               Cow position:chr7:7581796-7581636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:24-199
               
               
               Cow position:chr7:55499020-55498846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):41, 139

               
               
               Conread position:24-204
               
               
               Cow position:chr7:12330157-12329979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):42, 93

               
               
               Conread position:24-204
               
               
               Cow position:chr7:50166098-50166275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):43, 92

               
               
               Conread position:24-204
               
               
               Cow position:chr7:62603246-62603431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-219
               
               
               Cow position:chr7:39093857-39093660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-181
               
               
               Cow position:chr7:5906704-5906860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:25-183
               
               
               Cow position:chr7:4060335-4060499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:25-183
               
               
               Cow position:chr7:8234949-8235109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-185
               
               
               Cow position:chr7:57660095-57659932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr7:37435313-37435482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr7:43457609-43457435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-194
               
               
               Cow position:chr7:44094651-44094475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr7:51019848-51020023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:25-200
               
               
               Cow position:chr7:27290429-27290252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:25-203
               
               
               Cow position:chr7:63983130-63983305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):66, 36

               
               
               Conread position:25-204
               
               
               Cow position:chr7:8387344-8387164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 138

               
               
               Conread position:25-204
               
               
               Cow position:chr7:9858425-9858599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):38, 101

               
               
               Conread position:25-204
               
               
               Cow position:chr7:11511794-11511967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 88

               
               
               Conread position:25-204
               
               
               Cow position:chr7:25464636-25464817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr7:30011902-30012076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:25-204
               
               
               Cow position:chr7:39621235-39621422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 180

               
               
               Conread position:25-204
               
               
               Cow position:chr7:40672093-40672273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 167

               
               
               Conread position:25-204
               
               
               Cow position:chr7:53834521-53834341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr7:67873263-67873444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-206
               
               
               Cow position:chr7:62953584-62953761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 88

               
               
               Conread position:25-207
               
               
               Cow position:chr7:10559912-10559732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):40, 110

               
               
               Conread position:25-207
               
               
               Cow position:chr7:29682381-29682197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 54

               
               
               Conread position:25-213
               
               
               Cow position:chr7:33370462-33370646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 95

               
               
               Conread position:25-214
               
               
               Cow position:chr7:10884967-10885154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-214
               
               
               Cow position:chr7:58967337-58967528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr7:37455388-37455583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 177

               
               
               Conread position:25-216
               
               
               Cow position:chr7:57506711-57506527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 96

               
               
               Conread position:25-219
               
               
               Cow position:chr7:9136908-9137116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 136

               
               
               Conread position:25-219
               
               
               Cow position:chr7:20411455-20411260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):41, 144

               
               
               Conread position:25-219
               
               
               Cow position:chr7:40688012-40688203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:25-219
               
               
               Cow position:chr7:53271082-53271271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:25-220
               
               
               Cow position:chr7:16285507-16285312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):40, 52

               
               
               Conread position:25-220
               
               
               Cow position:chr7:25785909-25786105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 115

               
               
               Conread position:25-220
               
               
               Cow position:chr7:31885663-31885857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-220
               
               
               Cow position:chr7:41729234-41729044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):41, 97

               
               
               Conread position:25-220
               
               
               Cow position:chr7:43077470-43077668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):28, 127

               
               
               Conread position:25-220
               
               
               Cow position:chr7:58330759-58330562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-222
               
               
               Cow position:chr7:39528715-39528527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr7:519455-519261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):59, 40

               
               
               Conread position:25-223
               
               
               Cow position:chr7:18388329-18388128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):39, 175

               
               
               Conread position:25-223
               
               
               Cow position:chr7:40008899-40009096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 106

               
               
               Conread position:25-223
               
               
               Cow position:chr7:53862582-53862770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 51

               
               
               Conread position:25-223
               
               
               Cow position:chr7:62542733-62542934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):41, 145

               
               
               Conread position:25-224
               
               
               Cow position:chr7:18958471-18958273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):42, 69

               
               
               Conread position:25-224
               
               
               Cow position:chr7:53996370-53996564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:25-225
               
               
               Cow position:chr7:28441248-28441438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 91

               
               
               Conread position:25-226
               
               
               Cow position:chr7:40310992-40310792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):42, 96

               
               
               Conread position:25-226
               
               
               Cow position:chr7:67099403-67099605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):41, 187

               
               
               Conread position:25-228
               
               
               Cow position:chr7:29505185-29505382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):42, 89

               
               
               Conread position:25-233
               
               
               Cow position:chr7:25083752-25083963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):41, 178

               
               
               Conread position:25-236
               
               
               Cow position:chr7:33279927-33279712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:26-191
               
               
               Cow position:chr7:49736134-49736304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:26-218
               
               
               Cow position:chr7:535645-535457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):40, 73

               
               
               Conread position:26-219
               
               
               Cow position:chr7:38065520-38065327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):32, 185

               
               
               Conread position:27-212
               
               
               Cow position:chr7:62939555-62939729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 24

               
               
               Conread position:28-183
               
               
               Cow position:chr7:7510780-7510624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:28-185
               
               
               Cow position:chr7:15650774-15650614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr7:32920528-32920370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:28-185
               
               
               Cow position:chr7:37569122-37569281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-185
               
               
               Cow position:chr7:60755759-60755599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):32, 122

               
               
               Conread position:28-186
               
               
               Cow position:chr7:3431293-3431133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-192
               
               
               Cow position:chr7:44993671-44993835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:28-199
               
               
               Cow position:chr7:31523618-31523789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:28-199
               
               
               Cow position:chr7:37394371-37394542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-199
               
               
               Cow position:chr7:50442821-50442652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:28-201
               
               
               Cow position:chr7:31049519-31049354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 92

               
               
               Conread position:28-204
               
               
               Cow position:chr7:17000799-17000977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr7:61389928-61390106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-207
               
               
               Cow position:chr7:23671825-23672005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:28-213
               
               
               Cow position:chr7:12232119-12232306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr7:11796829-11796644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-214
               
               
               Cow position:chr7:19466177-19466001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:28-215
               
               
               Cow position:chr7:25135749-25135560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:28-215
               
               
               Cow position:chr7:64268921-64268732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr7:15862318-15862129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-216
               
               
               Cow position:chr7:47547482-47547667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:28-216
               
               
               Cow position:chr7:55060337-55060530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 146

               
               
               Conread position:28-217
               
               
               Cow position:chr7:6044063-6043874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 98

               
               
               Conread position:28-217
               
               
               Cow position:chr7:47513611-47513426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:28-218
               
               
               Cow position:chr7:44037598-44037794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr7:44942630-44942821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:28-219
               
               
               Cow position:chr7:43184858-43185052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):33, 96

               
               
               Conread position:28-220
               
               
               Cow position:chr7:8888365-8888557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:28-220
               
               
               Cow position:chr7:41614908-41614713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-222
               
               
               Cow position:chr7:3304650-3304845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):38, 59

               
               
               Conread position:28-222
               
               
               Cow position:chr7:10075092-10075291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 194

               
               
               Conread position:28-222
               
               
               Cow position:chr7:17750769-17750577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):20, 29

               
               
               Conread position:28-223
               
               
               Cow position:chr7:8877953-8878150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):38, 106

               
               
               Conread position:28-223
               
               
               Cow position:chr7:9173830-9174027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr7:17807101-17806904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr7:39145672-39145477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 175

               
               
               Conread position:28-223
               
               
               Cow position:chr7:61005970-61006167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr7:65615841-65616037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:28-224
               
               
               Cow position:chr7:56880147-56880342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 177

               
               
               Conread position:28-225
               
               
               Cow position:chr7:25415467-25415667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr7:48508519-48508719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr7:65597553-65597358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):39, 144

               
               
               Conread position:28-228
               
               
               Cow position:chr7:17782620-17782419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):30, 76

               
               
               Conread position:29-204
               
               
               Cow position:chr7:29376044-29375865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:29-206
               
               
               Cow position:chr7:40520537-40520359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 122

               
               
               Conread position:29-207
               
               
               Cow position:chr7:31074502-31074323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:29-215
               
               
               Cow position:chr7:15648398-15648210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):37, 154

               
               
               Conread position:29-218
               
               
               Cow position:chr7:23255828-23256014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:29-220
               
               
               Cow position:chr7:48616301-48616104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:29-223
               
               
               Cow position:chr7:9070529-9070721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):190, 83

               
               
               Conread position:29-233
               
               
               Cow position:chr7:32692953-32692748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):34, 77

               
               
               Conread position:30-223
               
               
               Cow position:chr7:9068525-9068328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:31-185
               
               
               Cow position:chr7:40336312-40336467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:31-207
               
               
               Cow position:chr7:41122191-41122020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 102

               
               
               Conread position:31-215
               
               
               Cow position:chr7:65619356-65619175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:32-213
               
               
               Cow position:chr7:10438405-10438584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 84

               
               
               Conread position:32-215
               
               
               Cow position:chr7:37651573-37651757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):33, 164

               
               
               Conread position:32-224
               
               
               Cow position:chr7:22730276-22730470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:32-226
               
               
               Cow position:chr7:9577173-9576973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:33-218
               
               
               Cow position:chr7:64385034-64384853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:35-204
               
               
               Cow position:chr7:53221760-53221588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-206
               
               
               Cow position:chr7:8809885-8810057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):32, 155

               
               
               Conread position:35-214
               
               
               Cow position:chr7:54054668-54054855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 42

               
               
               Conread position:35-218
               
               
               Cow position:chr7:13606533-13606715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:35-226
               
               
               Cow position:chr7:47931716-47931522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):13, 17

               
               
               Conread position:35-235
               
               
               Cow position:chr7:12928419-12928214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:36-186
               
               
               Cow position:chr7:11945964-11946110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:36-191
               
               
               Cow position:chr7:48900642-48900794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:36-192
               
               
               Cow position:chr7:12484380-12484538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-197
               
               
               Cow position:chr7:58615346-58615505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):29, 14

               
               
               Conread position:36-204
               
               
               Cow position:chr7:48020509-48020672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:36-215
               
               
               Cow position:chr7:64228811-64228630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:36-217
               
               
               Cow position:chr7:9077729-9077548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):31, 89

               
               
               Conread position:36-217
               
               
               Cow position:chr7:18971310-18971125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-218
               
               
               Cow position:chr7:26896430-26896614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-218
               
               
               Cow position:chr7:36665406-36665587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 30

               
               
               Conread position:36-219
               
               
               Cow position:chr7:41293665-41293487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:36-220
               
               
               Cow position:chr7:30185707-30185523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):171, 36

               
               
               Conread position:36-222
               
               
               Cow position:chr7:43356245-43356433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:36-225
               
               
               Cow position:chr7:31694558-31694362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-192
               
               
               Cow position:chr7:32693464-32693304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:37-214
               
               
               Cow position:chr7:39131417-39131245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:37-215
               
               
               Cow position:chr7:32284003-32284185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:37-223
               
               
               Cow position:chr7:63112694-63112509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):7, 71

               
               
               Conread position:39-216
               
               
               Cow position:chr7:42335410-42335581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:39-222
               
               
               Cow position:chr7:36717388-36717198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:40-198
               
               
               Cow position:chr7:32093335-32093495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-213
               
               
               Cow position:chr7:14191661-14191490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:40-214
               
               
               Cow position:chr7:61740438-61740270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 86

               
               
               Conread position:40-216
               
               
               Cow position:chr7:28337319-28337494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 66

               
               
               Conread position:40-219
               
               
               Cow position:chr7:49068756-49068575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-220
               
               
               Cow position:chr7:11444071-11444248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:139
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):25, 127

               
               
               Conread position:40-223
               
               
               Cow position:chr7:62734393-62734206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:41-231
               
               
               Cow position:chr7:42222852-42222666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):24, 46

               
               
               Conread position:42-199
               
               
               Cow position:chr7:10944876-10945035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 155

               
               
               Conread position:42-207
               
               
               Cow position:chr7:12913905-12913738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:42-223
               
               
               Cow position:chr7:16574687-16574869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):21, 64

               
               
               Conread position:43-205
               
               
               Cow position:chr7:53000123-53000283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):24, 56

               
               
               Conread position:46-198
               
               
               Cow position:chr7:59233261-59233416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:47-204
               
               
               Cow position:chr7:32373129-32373282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 59

               
               
               Conread position:48-222
               
               
               Cow position:chr7:2873773-2873935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-165
               
               
               Cow position:chr7:54038025-54037908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-201
               
               
               Cow position:chr7:9128963-9128811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:50-201
               
               
               Cow position:chr7:40710353-40710501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 50

               
               
               Conread position:50-216
               
               
               Cow position:chr7:15570133-15570296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):17, 74

               
               
               Conread position:52-228
               
               
               Cow position:chr7:12227065-12226887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):13, 144

               
               
               Conread position:53-204
               
               
               Cow position:chr7:61314428-61314274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:53-212
               
               
               Cow position:chr7:19330555-19330398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:53-223
               
               
               Cow position:chr7:42894547-42894726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 43

               
               
               Conread position:55-204
               
               
               Cow position:chr7:19242027-19241877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 52

               
               
               Conread position:56-192
               
               
               Cow position:chr7:56838425-56838287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 83

               
               
               Conread position:57-198
               
               
               Cow position:chr7:52838271-52838130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:58-192
               
               
               Cow position:chr7:426017-425882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 20

               
               
               Conread position:62-191
               
               
               Cow position:chr7:32807557-32807682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr7:10466630-10466493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr7:12342887-12342745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr7:17772209-17772067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr7:30290836-30290696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr7:35266033-35265892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr7:40361760-40361899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr7:45070188-45070049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:62-207
               
               
               Cow position:chr7:7786902-7786755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-211
               
               
               Cow position:chr7:53791482-53791340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr7:23609486-23609637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:62-214
               
               
               Cow position:chr7:9238900-9238749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr7:21174922-21175077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):54, 141

               
               
               Conread position:62-214
               
               
               Cow position:chr7:28109689-28109839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr7:35925679-35925828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr7:48385790-48385946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):126, 130

               
               
               Conread position:62-221
               
               
               Cow position:chr7:35651621-35651464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):48, 130

               
               
               Conread position:62-222
               
               
               Cow position:chr7:14497390-14497550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):142, 109

               
               
               Conread position:62-223
               
               
               Cow position:chr7:14816727-14816559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 142

               
               
               Conread position:62-223
               
               
               Cow position:chr7:40437720-40437558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr7:53609710-53609553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:62-226
               
               
               Cow position:chr7:25886190-25886354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-233
               
               
               Cow position:chr7:16022404-16022575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):150, 53

               
               
               Conread position:63-204
               
               
               Cow position:chr7:7462009-7461869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:63-204
               
               
               Cow position:chr7:32823947-32823807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:63-218
               
               
               Cow position:chr7:46682471-46682624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:63-223
               
               
               Cow position:chr7:44134834-44134677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:64-199
               
               
               Cow position:chr7:9093669-9093536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:64-204
               
               
               Cow position:chr7:39203207-39203348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:66-214
               
               
               Cow position:chr7:25802389-25802530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):21, 49

               
               
               Conread position:66-221
               
               
               Cow position:chr7:8405971-8406127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):47, 27

               
               
               Conread position:68-185
               
               
               Cow position:chr7:51673182-51673065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-209
               
               
               Cow position:chr7:43103078-43102938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):57, 48

               
               
               Conread position:68-218
               
               
               Cow position:chr7:14496508-14496362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:68-219
               
               
               Cow position:chr7:9744830-9744679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-223
               
               
               Cow position:chr7:4138648-4138494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):7, 57

               
               
               Conread position:69-214
               
               
               Cow position:chr7:47047229-47047089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):125, 55

               
               
               Conread position:72-220
               
               
               Cow position:chr7:52117281-52117134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 89

               
               
               Conread position:74-204
               
               
               Cow position:chr7:65988734-65988605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:75-192
               
               
               Cow position:chr7:43347830-43347947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:76-211
               
               
               Cow position:chr7:53983225-53983358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:77-219
               
               
               Cow position:chr7:8728662-8728521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:79-204
               
               
               Cow position:chr7:12340584-12340709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-208
               
               
               Cow position:chr7:14258437-14258567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:80-205
               
               
               Cow position:chr7:25865900-25865772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:80-236
               
               
               Cow position:chr7:49192188-49192342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 20

               
               
               Conread position:81-215
               
               
               Cow position:chr7:45063534-45063675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:81-219
               
               
               Cow position:chr7:12468976-12469118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:82-213
               
               
               Cow position:chr7:27346961-27346830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:82-223
               
               
               Cow position:chr7:23615828-23615687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):7, 129

               
               
               Conread position:82-225
               
               
               Cow position:chr7:22832370-22832511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:83-220
               
               
               Cow position:chr7:18464366-18464234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:85-204
               
               
               Cow position:chr7:29474786-29474905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-221
               
               
               Cow position:chr7:9163859-9163994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):77, 103

               
               
               Conread position:85-223
               
               
               Cow position:chr7:31900184-31900050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:87-224
               
               
               Cow position:chr7:33505604-33505739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:88-219
               
               
               Cow position:chr7:53270957-53271087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:91-192
               
               
               Cow position:chr7:29667819-29667717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:103
               
               
               Alignm identity:86
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:91-236
               
               
               Cow position:chr7:55482524-55482673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):17, 130

               
               
               Conread position:95-217
               
               
               Cow position:chr7:3311176-3311295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:103-204
               
               
               Cow position:chr7:38078010-38078111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:103-213
               
               
               Cow position:chr7:20366769-20366882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:104-220
               
               
               Cow position:chr7:46021828-46021713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 11

               
               
               Conread position:105-221
               
               
               Cow position:chr7:39764032-39763915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:114-221
               
               
               Cow position:chr7:22939006-22939110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:89
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:1-147
               
               
               Cow position:chr8:20306988-20307138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 24

               
               
               Conread position:1-183
               
               
               Cow position:chr8:1999642-1999828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-186
               
               
               Cow position:chr8:8097254-8097066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-199
               
               
               Cow position:chr8:55058715-55058921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):66, 178

               
               
               Conread position:1-203
               
               
               Cow position:chr8:48450480-48450266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):13, 28

               
               
               Conread position:1-204
               
               
               Cow position:chr8:6910149-6909943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 147

               
               
               Conread position:1-204
               
               
               Cow position:chr8:19204433-19204226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr8:40161202-40160986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr8:20105860-20105647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):19, 198

               
               
               Conread position:1-214
               
               
               Cow position:chr8:34035690-34035898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-214
               
               
               Cow position:chr8:55063951-55064162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:1-215
               
               
               Cow position:chr8:35534274-35534061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 151

               
               
               Conread position:1-215
               
               
               Cow position:chr8:39556136-39556359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:1-215
               
               
               Cow position:chr8:40696891-40697107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:1-218
               
               
               Cow position:chr8:13922653-13922871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):64, 105

               
               
               Conread position:1-219
               
               
               Cow position:chr8:8773065-8772842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):12, 165

               
               
               Conread position:1-220
               
               
               Cow position:chr8:18730460-18730693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:1-220
               
               
               Cow position:chr8:36375503-36375288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:1-220
               
               
               Cow position:chr8:38993748-38993963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 117

               
               
               Conread position:1-222
               
               
               Cow position:chr8:60746652-60746879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 18

               
               
               Conread position:1-223
               
               
               Cow position:chr8:39350779-39350550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 194

               
               
               Conread position:1-225
               
               
               Cow position:chr8:18869892-18870121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):10, 201

               
               
               Conread position:1-233
               
               
               Cow position:chr8:3762161-3762398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):12, 164

               
               
               Conread position:1-233
               
               
               Cow position:chr8:53965464-53965226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):19, 14

               
               
               Conread position:2-192
               
               
               Cow position:chr8:60594868-60595067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:2-199
               
               
               Cow position:chr8:3446085-3445885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 121

               
               
               Conread position:3-172
               
               
               Cow position:chr8:34402306-34402483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-180
               
               
               Cow position:chr8:20409699-20409882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 84

               
               
               Conread position:3-186
               
               
               Cow position:chr8:1651606-1651792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:3-195
               
               
               Cow position:chr8:935716-935914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):26, 140

               
               
               Conread position:3-198
               
               
               Cow position:chr8:17046750-17046548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:3-201
               
               
               Cow position:chr8:19378262-19378468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 200

               
               
               Conread position:3-201
               
               
               Cow position:chr8:19475072-19474867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 201

               
               
               Conread position:3-201
               
               
               Cow position:chr8:24513133-24512931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 198

               
               
               Conread position:3-201
               
               
               Cow position:chr8:28228256-28228453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:3-202
               
               
               Cow position:chr8:56553791-56553989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-204
               
               
               Cow position:chr8:5477840-5477637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):23, 127

               
               
               Conread position:3-204
               
               
               Cow position:chr8:5962660-5962867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-204
               
               
               Cow position:chr8:25554818-25554610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 192

               
               
               Conread position:3-204
               
               
               Cow position:chr8:28378756-28378549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):23, 139

               
               
               Conread position:3-205
               
               
               Cow position:chr8:22273874-22274080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):20, 196

               
               
               Conread position:3-205
               
               
               Cow position:chr8:36860488-36860684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):64, 16

               
               
               Conread position:3-214
               
               
               Cow position:chr8:43405349-43405566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):18, 201

               
               
               Conread position:3-214
               
               
               Cow position:chr8:46799273-46799053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-214
               
               
               Cow position:chr8:53606508-53606290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):28, 53

               
               
               Conread position:3-217
               
               
               Cow position:chr8:16413799-16413586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):23, 35

               
               
               Conread position:3-218
               
               
               Cow position:chr8:51581137-51580911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 194

               
               
               Conread position:3-219
               
               
               Cow position:chr8:9641370-9641596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:3-219
               
               
               Cow position:chr8:10262101-10261880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):23, 104

               
               
               Conread position:3-220
               
               
               Cow position:chr8:18017529-18017752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):20, 201

               
               
               Conread position:3-220
               
               
               Cow position:chr8:39329846-39329625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 94

               
               
               Conread position:3-220
               
               
               Cow position:chr8:52870193-52870413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:3-221
               
               
               Cow position:chr8:55875810-55875595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr8:11124551-11124334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):21, 105

               
               
               Conread position:3-223
               
               
               Cow position:chr8:1620715-1620490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):23, 163

               
               
               Conread position:3-223
               
               
               Cow position:chr8:11612560-11612782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:162
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 178

               
               
               Conread position:3-224
               
               
               Cow position:chr8:27731048-27731273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):21, 201

               
               
               Conread position:3-229
               
               
               Cow position:chr8:522417-522180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:4-185
               
               
               Cow position:chr8:21212805-21212986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-188
               
               
               Cow position:chr8:15394848-15394657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):17, 93

               
               
               Conread position:4-191
               
               
               Cow position:chr8:31265894-31265707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 122

               
               
               Conread position:4-192
               
               
               Cow position:chr8:1023976-1024165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:4-192
               
               
               Cow position:chr8:3423017-3423211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 107

               
               
               Conread position:4-195
               
               
               Cow position:chr8:16144148-16144341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-199
               
               
               Cow position:chr8:45879049-45879239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:4-199
               
               
               Cow position:chr8:45925631-45925821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 21

               
               
               Conread position:4-202
               
               
               Cow position:chr8:8668169-8667971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-202
               
               
               Cow position:chr8:19784874-19785072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):21, 115

               
               
               Conread position:4-204
               
               
               Cow position:chr8:27138783-27138581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:4-204
               
               
               Cow position:chr8:53492352-53492544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 8

               
               
               Conread position:4-207
               
               
               Cow position:chr8:1114797-1114591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):22, 167

               
               
               Conread position:4-207
               
               
               Cow position:chr8:21911648-21911865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-208
               
               
               Cow position:chr8:35497668-35497464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):22, 115

               
               
               Conread position:4-214
               
               
               Cow position:chr8:39487625-39487412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):17, 92

               
               
               Conread position:4-214
               
               
               Cow position:chr8:41722175-41721965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:4-215
               
               
               Cow position:chr8:44126481-44126696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):19, 197

               
               
               Conread position:4-216
               
               
               Cow position:chr8:51402976-51403188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:4-218
               
               
               Cow position:chr8:37571686-37571473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:4-218
               
               
               Cow position:chr8:55095893-55096103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-218
               
               
               Cow position:chr8:61067301-61067514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):17, 110

               
               
               Conread position:4-219
               
               
               Cow position:chr8:6232884-6232667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:4-219
               
               
               Cow position:chr8:16061086-16061305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 17

               
               
               Conread position:4-220
               
               
               Cow position:chr8:33125510-33125725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):15, 102

               
               
               Conread position:4-222
               
               
               Cow position:chr8:38860579-38860806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:4-223
               
               
               Cow position:chr8:5665682-5665457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):22, 203

               
               
               Conread position:4-223
               
               
               Cow position:chr8:25640089-25639870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 58

               
               
               Conread position:4-223
               
               
               Cow position:chr8:51511839-51511618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):22, 38

               
               
               Conread position:4-225
               
               
               Cow position:chr8:55901010-55900786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:4-226
               
               
               Cow position:chr8:16216073-16216295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):5, 16

               
               
               Conread position:4-228
               
               
               Cow position:chr8:26625886-26626110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:4-236
               
               
               Cow position:chr8:20783248-20783012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):7, 127

               
               
               Conread position:5-211
               
               
               Cow position:chr8:42116595-42116396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):176, 21

               
               
               Conread position:5-222
               
               
               Cow position:chr8:42145757-42145531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:5-222
               
               
               Cow position:chr8:49658849-49659064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:5-224
               
               
               Cow position:chr8:5499105-5499330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:6-218
               
               
               Cow position:chr8:54306375-54306583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):63, 30

               
               
               Conread position:6-220
               
               
               Cow position:chr8:21826717-21826509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 58

               
               
               Conread position:6-221
               
               
               Cow position:chr8:45859826-45860045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):7, 194

               
               
               Conread position:6-221
               
               
               Cow position:chr8:48675061-48675280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 95

               
               
               Conread position:6-223
               
               
               Cow position:chr8:9811243-9811464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):8, 208

               
               
               Conread position:6-223
               
               
               Cow position:chr8:34259173-34259383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 11

               
               
               Conread position:6-226
               
               
               Cow position:chr8:24406623-24406403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:6-233
               
               
               Cow position:chr8:39592606-39592834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:163
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):7, 194

               
               
               Conread position:7-216
               
               
               Cow position:chr8:21917320-21917116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):26, 18

               
               
               Conread position:8-185
               
               
               Cow position:chr8:37119819-37119640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:8-198
               
               
               Cow position:chr8:38852106-38852304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:8-205
               
               
               Cow position:chr8:21600462-21600671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:8-216
               
               
               Cow position:chr8:54031899-54032102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):7, 123

               
               
               Conread position:8-236
               
               
               Cow position:chr8:6795400-6795631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):18, 184

               
               
               Conread position:9-213
               
               
               Cow position:chr8:9814915-9815117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):11, 155

               
               
               Conread position:10-203
               
               
               Cow position:chr8:42378879-42378681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):16, 122

               
               
               Conread position:10-204
               
               
               Cow position:chr8:43104273-43104068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 188

               
               
               Conread position:10-220
               
               
               Cow position:chr8:37090075-37089858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-223
               
               
               Cow position:chr8:28321994-28322209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-199
               
               
               Cow position:chr8:38789979-38790169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):9, 40

               
               
               Conread position:11-213
               
               
               Cow position:chr8:50015600-50015397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 187

               
               
               Conread position:11-216
               
               
               Cow position:chr8:40280706-40280914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 13

               
               
               Conread position:11-217
               
               
               Cow position:chr8:46544100-46543890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 13

               
               
               Conread position:11-217
               
               
               Cow position:chr8:47412944-47413151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):9, 185

               
               
               Conread position:12-223
               
               
               Cow position:chr8:22223627-22223415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):10, 127

               
               
               Conread position:13-233
               
               
               Cow position:chr8:6477868-6478093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):10, 107

               
               
               Conread position:14-185
               
               
               Cow position:chr8:16505520-16505686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:14-222
               
               
               Cow position:chr8:6184217-6184005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 181

               
               
               Conread position:16-198
               
               
               Cow position:chr8:9942494-9942312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 9

               
               
               Conread position:16-199
               
               
               Cow position:chr8:11863981-11864163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-201
               
               
               Cow position:chr8:5484542-5484358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):51, 9

               
               
               Conread position:16-204
               
               
               Cow position:chr8:47342767-47342956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 141

               
               
               Conread position:18-222
               
               
               Cow position:chr8:39968249-39968046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):48, 14

               
               
               Conread position:19-198
               
               
               Cow position:chr8:11216822-11216647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):39, 107

               
               
               Conread position:19-201
               
               
               Cow position:chr8:37292057-37291873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:19-202
               
               
               Cow position:chr8:19642501-19642681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 87

               
               
               Conread position:19-204
               
               
               Cow position:chr8:37167305-37167492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr8:46952548-46952735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:19-207
               
               
               Cow position:chr8:18831776-18831968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):47, 76

               
               
               Conread position:19-207
               
               
               Cow position:chr8:43940866-43940679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):46, 103

               
               
               Conread position:19-207
               
               
               Cow position:chr8:53552708-53552887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:19-212
               
               
               Cow position:chr8:1526705-1526515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):34, 110

               
               
               Conread position:19-213
               
               
               Cow position:chr8:51524040-51524233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:19-214
               
               
               Cow position:chr8:36034935-36034734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):47, 98

               
               
               Conread position:19-214
               
               
               Cow position:chr8:46964768-46964965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:19-216
               
               
               Cow position:chr8:47169977-47170171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:19-216
               
               
               Cow position:chr8:48173970-48173774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:19-218
               
               
               Cow position:chr8:6665520-6665312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):48, 188

               
               
               Conread position:19-219
               
               
               Cow position:chr8:690247-690053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:19-219
               
               
               Cow position:chr8:4992586-4992781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):46, 30

               
               
               Conread position:19-220
               
               
               Cow position:chr8:1187954-1188144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-220
               
               
               Cow position:chr8:24419244-24419056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):46, 97

               
               
               Conread position:19-223
               
               
               Cow position:chr8:17199399-17199193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):47, 73

               
               
               Conread position:19-223
               
               
               Cow position:chr8:18376853-18376655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-223
               
               
               Cow position:chr8:38358447-38358657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:19-226
               
               
               Cow position:chr8:50024932-50024725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):32, 27

               
               
               Conread position:19-228
               
               
               Cow position:chr8:8112770-8112980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-39
               
               
               Alignm gaps (pig, cow):11, 109

               
               
               Conread position:20-201
               
               
               Cow position:chr8:28210017-28210200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 5

               
               
               Conread position:20-204
               
               
               Cow position:chr8:20686788-20686976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:22-224
               
               
               Cow position:chr8:61845514-61845312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):43, 90

               
               
               Conread position:24-184
               
               
               Cow position:chr8:42794284-42794116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:24-205
               
               
               Cow position:chr8:38996693-38996874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 28

               
               
               Conread position:24-218
               
               
               Cow position:chr8:39352837-39352645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):178, 25

               
               
               Conread position:24-220
               
               
               Cow position:chr8:20926593-20926393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-220
               
               
               Cow position:chr8:31767996-31767806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 17

               
               
               Conread position:24-220
               
               
               Cow position:chr8:62034014-62034215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-227
               
               
               Cow position:chr8:51501247-51501047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:25-185
               
               
               Cow position:chr8:8283261-8283099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-192
               
               
               Cow position:chr8:37443569-37443728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:25-198
               
               
               Cow position:chr8:38711632-38711798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):42, 87

               
               
               Conread position:25-199
               
               
               Cow position:chr8:38665577-38665751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 149

               
               
               Conread position:25-199
               
               
               Cow position:chr8:50735861-50736045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-200
               
               
               Cow position:chr8:34556203-34556380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):36, 106

               
               
               Conread position:25-201
               
               
               Cow position:chr8:43942766-43942944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-203
               
               
               Cow position:chr8:38478977-38479156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-204
               
               
               Cow position:chr8:9401964-9402144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 130

               
               
               Conread position:25-204
               
               
               Cow position:chr8:22575853-22575675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):38, 170

               
               
               Conread position:25-204
               
               
               Cow position:chr8:32457827-32458005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):25, 95

               
               
               Conread position:25-204
               
               
               Cow position:chr8:36054201-36054383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-205
               
               
               Cow position:chr8:50310812-50310634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):41, 121

               
               
               Conread position:25-206
               
               
               Cow position:chr8:53641454-53641641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):21, 71

               
               
               Conread position:25-208
               
               
               Cow position:chr8:11003761-11003575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-213
               
               
               Cow position:chr8:1297549-1297735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):40, 138

               
               
               Conread position:25-213
               
               
               Cow position:chr8:11135204-11135012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 129

               
               
               Conread position:25-214
               
               
               Cow position:chr8:6681893-6681701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 95

               
               
               Conread position:25-214
               
               
               Cow position:chr8:19223620-19223435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 97

               
               
               Conread position:25-214
               
               
               Cow position:chr8:23136701-23136509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr8:2181463-2181271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-215
               
               
               Cow position:chr8:17179995-17179817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:25-215
               
               
               Cow position:chr8:24870769-24870580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):40, 79

               
               
               Conread position:25-215
               
               
               Cow position:chr8:26008920-26009111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):39, 178

               
               
               Conread position:25-215
               
               
               Cow position:chr8:47057625-47057435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):40, 81

               
               
               Conread position:25-216
               
               
               Cow position:chr8:37173023-37172828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):40, 82

               
               
               Conread position:25-218
               
               
               Cow position:chr8:40743181-40742981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 75

               
               
               Conread position:25-219
               
               
               Cow position:chr8:56249801-56249998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 74

               
               
               Conread position:25-220
               
               
               Cow position:chr8:23608850-23608655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):39, 164

               
               
               Conread position:25-220
               
               
               Cow position:chr8:24363599-24363404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:25-221
               
               
               Cow position:chr8:10832395-10832195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-221
               
               
               Cow position:chr8:26881789-26881595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:25-222
               
               
               Cow position:chr8:33755496-33755693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 163

               
               
               Conread position:25-222
               
               
               Cow position:chr8:38811341-38811537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 137

               
               
               Conread position:25-223
               
               
               Cow position:chr8:5672115-5671919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):90, 37

               
               
               Conread position:25-223
               
               
               Cow position:chr8:6194016-6194218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-223
               
               
               Cow position:chr8:12058764-12058962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-38
               
               
               Alignm gaps (pig, cow):181, 20

               
               
               Conread position:25-223
               
               
               Cow position:chr8:55214287-55214486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 100

               
               
               Conread position:25-224
               
               
               Cow position:chr8:23653062-23652864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:25-224
               
               
               Cow position:chr8:55725729-55725533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):40, 25

               
               
               Conread position:25-225
               
               
               Cow position:chr8:39590273-39590475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):41, 158

               
               
               Conread position:25-225
               
               
               Cow position:chr8:52197418-52197218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-232
               
               
               Cow position:chr8:8767099-8766891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):40, 175

               
               
               Conread position:26-220
               
               
               Cow position:chr8:34820278-34820079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:28-178
               
               
               Cow position:chr8:24126009-24126161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-192
               
               
               Cow position:chr8:13925671-13925838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 23

               
               
               Conread position:28-192
               
               
               Cow position:chr8:32278306-32278142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 25

               
               
               Conread position:28-197
               
               
               Cow position:chr8:25271871-25272042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-198
               
               
               Cow position:chr8:5937465-5937636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 78

               
               
               Conread position:28-199
               
               
               Cow position:chr8:27033813-27033980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 131

               
               
               Conread position:28-200
               
               
               Cow position:chr8:24209915-24210088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 12

               
               
               Conread position:28-204
               
               
               Cow position:chr8:3056882-3057060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr8:6006069-6005891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr8:18290080-18289901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr8:27661903-27662075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):37, 96

               
               
               Conread position:28-207
               
               
               Cow position:chr8:47707472-47707301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 58

               
               
               Conread position:28-207
               
               
               Cow position:chr8:47751872-47751691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-212
               
               
               Cow position:chr8:18091365-18091551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):36, 130

               
               
               Conread position:28-213
               
               
               Cow position:chr8:38612715-38612526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr8:12520353-12520162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:28-214
               
               
               Cow position:chr8:35452616-35452798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:28-214
               
               
               Cow position:chr8:61554938-61554758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 87

               
               
               Conread position:28-216
               
               
               Cow position:chr8:1804669-1804858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:28-216
               
               
               Cow position:chr8:35817077-35816889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-216
               
               
               Cow position:chr8:49542924-49543110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):35, 97

               
               
               Conread position:28-217
               
               
               Cow position:chr8:9168775-9168585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 44

               
               
               Conread position:28-217
               
               
               Cow position:chr8:21222670-21222861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr8:20327808-20327621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr8:37298519-37298708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):37, 67

               
               
               Conread position:28-219
               
               
               Cow position:chr8:24831278-24831084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr8:38696353-38696163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):36, 116

               
               
               Conread position:28-219
               
               
               Cow position:chr8:39066263-39066461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr8:55214081-55214274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 44

               
               
               Conread position:28-220
               
               
               Cow position:chr8:20897387-20897581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr8:21940786-21940589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr8:26961216-26961413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr8:36299851-36299654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr8:38416087-38415894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 183

               
               
               Conread position:28-220
               
               
               Cow position:chr8:53880604-53880410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr8:1666033-1665842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 159

               
               
               Conread position:28-223
               
               
               Cow position:chr8:4203812-4203613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr8:6333385-6333583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr8:37020519-37020719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr8:49721157-49721355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr8:51492711-51492513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-224
               
               
               Cow position:chr8:37635952-37635758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 85

               
               
               Conread position:28-224
               
               
               Cow position:chr8:48775861-48776058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 136

               
               
               Conread position:28-224
               
               
               Cow position:chr8:54177673-54177481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:28-225
               
               
               Cow position:chr8:21224043-21223844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-231
               
               
               Cow position:chr8:53762173-53762376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:28-234
               
               
               Cow position:chr8:44674724-44674936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-236
               
               
               Cow position:chr8:48645505-48645719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:29-192
               
               
               Cow position:chr8:10639778-10639946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 63

               
               
               Conread position:29-204
               
               
               Cow position:chr8:13454581-13454404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):34, 136

               
               
               Conread position:29-207
               
               
               Cow position:chr8:20582645-20582465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:29-219
               
               
               Cow position:chr8:43112803-43112621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):35, 80

               
               
               Conread position:29-220
               
               
               Cow position:chr8:48182545-48182737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):29, 74

               
               
               Conread position:29-224
               
               
               Cow position:chr8:6616748-6616543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:31-219
               
               
               Cow position:chr8:12105593-12105780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):35, 12

               
               
               Conread position:32-206
               
               
               Cow position:chr8:34417118-34416944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:33-192
               
               
               Cow position:chr8:45167586-45167425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-204
               
               
               Cow position:chr8:2375974-2375802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):33, 165

               
               
               Conread position:33-222
               
               
               Cow position:chr8:50281923-50282119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:35-194
               
               
               Cow position:chr8:43052018-43052181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-216
               
               
               Cow position:chr8:37148359-37148541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:35-219
               
               
               Cow position:chr8:2157038-2156850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 167

               
               
               Conread position:35-219
               
               
               Cow position:chr8:45687628-45687446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 64

               
               
               Conread position:35-220
               
               
               Cow position:chr8:31902637-31902459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 82

               
               
               Conread position:35-232
               
               
               Cow position:chr8:35827755-35827558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):28, 130

               
               
               Conread position:35-234
               
               
               Cow position:chr8:57388846-57389041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):32, 83

               
               
               Conread position:36-199
               
               
               Cow position:chr8:22428528-22428363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr8:20044018-20044188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-206
               
               
               Cow position:chr8:54239615-54239784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 59

               
               
               Conread position:36-207
               
               
               Cow position:chr8:59489160-59489331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:36-212
               
               
               Cow position:chr8:36175301-36175123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:36-213
               
               
               Cow position:chr8:38572219-38572046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 81

               
               
               Conread position:36-214
               
               
               Cow position:chr8:57586144-57586324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:36-218
               
               
               Cow position:chr8:6579645-6579463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):31, 95

               
               
               Conread position:36-218
               
               
               Cow position:chr8:8323820-8323637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:36-219
               
               
               Cow position:chr8:37167793-37167979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):30, 98

               
               
               Conread position:36-220
               
               
               Cow position:chr8:38356807-38356620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-220
               
               
               Cow position:chr8:39545049-39545228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):28, 81

               
               
               Conread position:36-232
               
               
               Cow position:chr8:49305700-49305505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):31, 56

               
               
               Conread position:36-237
               
               
               Cow position:chr8:34769548-34769746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):29, 140

               
               
               Conread position:37-204
               
               
               Cow position:chr8:39475582-39475757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:37-204
               
               
               Cow position:chr8:58393612-58393773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 87

               
               
               Conread position:37-223
               
               
               Cow position:chr8:15709083-15709277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:39-204
               
               
               Cow position:chr8:6163193-6163355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:39-224
               
               
               Cow position:chr8:35456789-35456602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:40-202
               
               
               Cow position:chr8:51443647-51443482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 160

               
               
               Conread position:40-204
               
               
               Cow position:chr8:10293384-10293221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:40-207
               
               
               Cow position:chr8:33663957-33664118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 76

               
               
               Conread position:40-207
               
               
               Cow position:chr8:38461647-38461484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:40-213
               
               
               Cow position:chr8:37860243-37860416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):27, 90

               
               
               Conread position:40-214
               
               
               Cow position:chr8:1971031-1970856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):25, 126

               
               
               Conread position:40-215
               
               
               Cow position:chr8:13118422-13118595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 66

               
               
               Conread position:40-218
               
               
               Cow position:chr8:3821930-3821754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 91

               
               
               Conread position:40-219
               
               
               Cow position:chr8:49281975-49281796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:40-220
               
               
               Cow position:chr8:8509747-8509927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:40-223
               
               
               Cow position:chr8:28506890-28506721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-223
               
               
               Cow position:chr8:37437298-37437116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):25, 59

               
               
               Conread position:40-223
               
               
               Cow position:chr8:38658410-38658224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):27, 150

               
               
               Conread position:40-237
               
               
               Cow position:chr8:51160509-51160318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):25, 86

               
               
               Conread position:41-223
               
               
               Cow position:chr8:20617335-20617521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):25, 51

               
               
               Conread position:42-214
               
               
               Cow position:chr8:28383031-28382858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):23, 156

               
               
               Conread position:42-223
               
               
               Cow position:chr8:45147999-45148171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:43-220
               
               
               Cow position:chr8:3966701-3966525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):22, 139

               
               
               Conread position:48-189
               
               
               Cow position:chr8:24871822-24871682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:50-183
               
               
               Cow position:chr8:38110196-38110321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-198
               
               
               Cow position:chr8:13479052-13479199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):15, 120

               
               
               Conread position:50-201
               
               
               Cow position:chr8:28509389-28509243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 76

               
               
               Conread position:50-207
               
               
               Cow position:chr8:24488542-24488706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-30
               
               
               Alignm gaps (pig, cow):15, 159

               
               
               Conread position:50-207
               
               
               Cow position:chr8:37481365-37481527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 157

               
               
               Conread position:50-213
               
               
               Cow position:chr8:36565257-36565422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 149

               
               
               Conread position:50-217
               
               
               Cow position:chr8:10440634-10440464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:50-218
               
               
               Cow position:chr8:1832636-1832465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:50-218
               
               
               Cow position:chr8:32332410-32332239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-219
               
               
               Cow position:chr8:48210911-48210745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:50-224
               
               
               Cow position:chr8:31615224-31615397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 123

               
               
               Conread position:50-228
               
               
               Cow position:chr8:38643445-38643265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 50

               
               
               Conread position:53-199
               
               
               Cow position:chr8:2865970-2866122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:53-207
               
               
               Cow position:chr8:61278095-61277944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 58

               
               
               Conread position:54-220
               
               
               Cow position:chr8:9465186-9465350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):11, 46

               
               
               Conread position:56-185
               
               
               Cow position:chr8:20347517-20347385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 27

               
               
               Conread position:56-222
               
               
               Cow position:chr8:48437167-48436999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:58-213
               
               
               Cow position:chr8:47679580-47679729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 59

               
               
               Conread position:59-223
               
               
               Cow position:chr8:11555375-11555224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:60-204
               
               
               Cow position:chr8:4868615-4868756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:62-184
               
               
               Cow position:chr8:49939118-49938996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr8:18887399-18887514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:62-185
               
               
               Cow position:chr8:20109360-20109483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-196
               
               
               Cow position:chr8:13321557-13321424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:62-196
               
               
               Cow position:chr8:23371501-23371367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr8:50403883-50403745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:62-203
               
               
               Cow position:chr8:633597-633455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:62-203
               
               
               Cow position:chr8:9582643-9582783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr8:2968654-2968796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr8:20112509-20112651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):43, 103

               
               
               Conread position:62-204
               
               
               Cow position:chr8:50825390-50825531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:62-208
               
               
               Cow position:chr8:60422099-60422240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):138, 42

               
               
               Conread position:62-212
               
               
               Cow position:chr8:60200022-60199872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):140, 47

               
               
               Conread position:62-213
               
               
               Cow position:chr8:4722891-4723040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr8:6816593-6816449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr8:25083252-25083402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr8:6417084-6416933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:62-215
               
               
               Cow position:chr8:50899086-50899237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr8:10194142-10194294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-216
               
               
               Cow position:chr8:37665364-37665513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr8:2482178-2482338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr8:14047387-14047543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-219
               
               
               Cow position:chr8:47667899-47667743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):144, 35

               
               
               Conread position:62-220
               
               
               Cow position:chr8:36912458-36912298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:134
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:62-220
               
               
               Cow position:chr8:49503922-49503764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):133, 125

               
               
               Conread position:62-221
               
               
               Cow position:chr8:20212423-20212264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-222
               
               
               Cow position:chr8:59092807-59092647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):151, 23

               
               
               Conread position:62-223
               
               
               Cow position:chr8:5173207-5173050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:62-223
               
               
               Cow position:chr8:8780748-8780593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):152, 48

               
               
               Conread position:62-223
               
               
               Cow position:chr8:26305789-26305628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):48, 129

               
               
               Conread position:62-224
               
               
               Cow position:chr8:31794750-31794589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:62-233
               
               
               Cow position:chr8:8927481-8927318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:62-240
               
               
               Cow position:chr8:3976306-3976481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:63-192
               
               
               Cow position:chr8:11203116-11203238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:63-204
               
               
               Cow position:chr8:41466348-41466205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 134

               
               
               Conread position:63-213
               
               
               Cow position:chr8:32243675-32243823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):137, 47

               
               
               Conread position:63-218
               
               
               Cow position:chr8:30868653-30868498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-222
               
               
               Cow position:chr8:27955072-27954919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 21

               
               
               Conread position:64-219
               
               
               Cow position:chr8:31290633-31290787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):150, 52

               
               
               Conread position:65-172
               
               
               Cow position:chr8:29765346-29765453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:88
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-196
               
               
               Cow position:chr8:61033202-61033074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:68-226
               
               
               Cow position:chr8:1936964-1937116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:69-214
               
               
               Cow position:chr8:31249613-31249754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):18, 56

               
               
               Conread position:69-218
               
               
               Cow position:chr8:9516547-9516403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:71-204
               
               
               Cow position:chr8:42758633-42758500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:72-218
               
               
               Cow position:chr8:45352163-45352021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:72-222
               
               
               Cow position:chr8:33033547-33033696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:73-204
               
               
               Cow position:chr8:53642308-53642178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 22

               
               
               Conread position:73-225
               
               
               Cow position:chr8:36771064-36771213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:73-229
               
               
               Cow position:chr8:23134657-23134501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-218
               
               
               Cow position:chr8:38331152-38331296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 124

               
               
               Conread position:75-219
               
               
               Cow position:chr8:18738558-18738418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:75-225
               
               
               Cow position:chr8:47225908-47225761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:79-185
               
               
               Cow position:chr8:6698556-6698662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:87
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:79-225
               
               
               Cow position:chr8:38800253-38800399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):121, 138

               
               
               Conread position:81-204
               
               
               Cow position:chr8:37683666-37683789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):14, 5

               
               
               Conread position:81-224
               
               
               Cow position:chr8:10441183-10441318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:81-224
               
               
               Cow position:chr8:30892642-30892503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:85-216
               
               
               Cow position:chr8:5385584-5385454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:85-223
               
               
               Cow position:chr8:35527537-35527398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:91-219
               
               
               Cow position:chr8:39116236-39116365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:93-215
               
               
               Cow position:chr8:47418985-47418863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:94-226
               
               
               Cow position:chr8:38641361-38641490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:95-221
               
               
               Cow position:chr8:30284145-30284268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:96-220
               
               
               Cow position:chr8:49560531-49560411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:102
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):118, 18

               
               
               Conread position:98-216
               
               
               Cow position:chr8:25786150-25786035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:99-223
               
               
               Cow position:chr8:43093-43218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:99-223
               
               
               Cow position:chr8:19228779-19228652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:101-218
               
               
               Cow position:chr8:32260207-32260322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:112-218
               
               
               Cow position:chr8:21223084-21223189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:86
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:115-216
               
               
               Cow position:chr8:48010443-48010342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:119-222
               
               
               Cow position:chr8:17013263-17013365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:85
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:1-183
               
               
               Cow position:chr9:5469893-5469713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):12, 82

               
               
               Conread position:1-185
               
               
               Cow position:chr9:29185110-29185298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-192
               
               
               Cow position:chr9:35167203-35167004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 176

               
               
               Conread position:1-197
               
               
               Cow position:chr9:34707285-34707479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):12, 59

               
               
               Conread position:1-199
               
               
               Cow position:chr9:31359630-31359434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:1-199
               
               
               Cow position:chr9:32307206-32307406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-199
               
               
               Cow position:chr9:34283980-34283781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:1-199
               
               
               Cow position:chr9:54664880-54664676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-201
               
               
               Cow position:chr9:27345557-27345761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 100

               
               
               Conread position:1-203
               
               
               Cow position:chr9:47214518-47214724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):12, 107

               
               
               Conread position:1-207
               
               
               Cow position:chr9:28726697-28726907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):12, 123

               
               
               Conread position:1-208
               
               
               Cow position:chr9:54598698-54598494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 169

               
               
               Conread position:1-214
               
               
               Cow position:chr9:28315454-28315240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):64, 196

               
               
               Conread position:1-216
               
               
               Cow position:chr9:13743903-13744123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-220
               
               
               Cow position:chr9:33114372-33114147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-221
               
               
               Cow position:chr9:35295717-35295501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:1-222
               
               
               Cow position:chr9:27261363-27261588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):20, 197

               
               
               Conread position:1-223
               
               
               Cow position:chr9:12337929-12337701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):14, 118

               
               
               Conread position:1-223
               
               
               Cow position:chr9:12355809-12355592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):64, 19

               
               
               Conread position:1-227
               
               
               Cow position:chr9:34410369-34410591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):12, 127

               
               
               Conread position:2-183
               
               
               Cow position:chr9:38846311-38846497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):64, 12

               
               
               Conread position:2-204
               
               
               Cow position:chr9:46344962-46344748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:2-222
               
               
               Cow position:chr9:35028134-35028358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):22, 119

               
               
               Conread position:3-185
               
               
               Cow position:chr9:22443598-22443781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 114

               
               
               Conread position:3-186
               
               
               Cow position:chr9:9753362-9753561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 98

               
               
               Conread position:3-192
               
               
               Cow position:chr9:38865954-38866146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):22, 108

               
               
               Conread position:3-198
               
               
               Cow position:chr9:27279338-27279135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:3-202
               
               
               Cow position:chr9:8920019-8919830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 23

               
               
               Conread position:3-202
               
               
               Cow position:chr9:31513910-31514110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 22

               
               
               Conread position:3-204
               
               
               Cow position:chr9:3847429-3847218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:3-209
               
               
               Cow position:chr9:27355950-27355737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:3-209
               
               
               Cow position:chr9:27358736-27358523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:3-209
               
               
               Cow position:chr9:28718737-28718535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):10, 134

               
               
               Conread position:3-214
               
               
               Cow position:chr9:32669918-32670131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):23, 157

               
               
               Conread position:3-214
               
               
               Cow position:chr9:48017745-48017952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:3-215
               
               
               Cow position:chr9:52511143-52510928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):17, 197

               
               
               Conread position:3-215
               
               
               Cow position:chr9:52763731-52763941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 109

               
               
               Conread position:3-218
               
               
               Cow position:chr9:9723850-9724072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-220
               
               
               Cow position:chr9:52484892-52485107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 24

               
               
               Conread position:3-221
               
               
               Cow position:chr9:43680149-43679929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 142

               
               
               Conread position:3-222
               
               
               Cow position:chr9:34697273-34697499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:3-223
               
               
               Cow position:chr9:13945635-13945405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-223
               
               
               Cow position:chr9:20318543-20318770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:3-223
               
               
               Cow position:chr9:52754826-52755053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:3-238
               
               
               Cow position:chr9:12681143-12680902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:4-183
               
               
               Cow position:chr9:55287864-55288045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):21, 115

               
               
               Conread position:4-184
               
               
               Cow position:chr9:21292387-21292564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):63, 13

               
               
               Conread position:4-185
               
               
               Cow position:chr9:7101464-7101276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):109, 61

               
               
               Conread position:4-186
               
               
               Cow position:chr9:4630131-4629950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):19, 34

               
               
               Conread position:4-194
               
               
               Cow position:chr9:1729646-1729854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-197
               
               
               Cow position:chr9:6934046-6934250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):22, 202

               
               
               Conread position:4-199
               
               
               Cow position:chr9:5342226-5342418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):62, 41

               
               
               Conread position:4-200
               
               
               Cow position:chr9:26102751-26102559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):22, 61

               
               
               Conread position:4-204
               
               
               Cow position:chr9:11123457-11123656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 51

               
               
               Conread position:4-204
               
               
               Cow position:chr9:34279032-34279235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):63, 21

               
               
               Conread position:4-205
               
               
               Cow position:chr9:5110886-5110678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:4-207
               
               
               Cow position:chr9:15215659-15215869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):16, 201

               
               
               Conread position:4-207
               
               
               Cow position:chr9:45484133-45483928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:4-207
               
               
               Cow position:chr9:63134419-63134209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-214
               
               
               Cow position:chr9:11271329-11271529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):19, 94

               
               
               Conread position:4-214
               
               
               Cow position:chr9:30664968-30665187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 5

               
               
               Conread position:4-214
               
               
               Cow position:chr9:44527134-44526922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:4-217
               
               
               Cow position:chr9:8992157-8992369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-217
               
               
               Cow position:chr9:50382300-50382505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 21

               
               
               Conread position:4-218
               
               
               Cow position:chr9:46981200-46981408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 122

               
               
               Conread position:4-219
               
               
               Cow position:chr9:25375708-25375925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):17, 53

               
               
               Conread position:4-219
               
               
               Cow position:chr9:41470070-41470289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):19, 191

               
               
               Conread position:4-220
               
               
               Cow position:chr9:62724561-62724350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):22, 65

               
               
               Conread position:4-221
               
               
               Cow position:chr9:58662267-58662051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):22, 44

               
               
               Conread position:4-222
               
               
               Cow position:chr9:34902081-34902290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):63, 10

               
               
               Conread position:4-222
               
               
               Cow position:chr9:50310738-50310960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):22, 47

               
               
               Conread position:4-223
               
               
               Cow position:chr9:6954227-6954449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-223
               
               
               Cow position:chr9:36458027-36457797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-223
               
               
               Cow position:chr9:55494964-55495184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):16, 12

               
               
               Conread position:4-237
               
               
               Cow position:chr9:31344585-31344815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):62, 191

               
               
               Conread position:5-204
               
               
               Cow position:chr9:22152065-22152259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):6, 13

               
               
               Conread position:5-233
               
               
               Cow position:chr9:13993788-13993553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:177
               
               
               Alignm E-value:8.99999e-40
               
               
               Alignm gaps (pig, cow):8, 118

               
               
               Conread position:6-186
               
               
               Cow position:chr9:42687733-42687904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):20, 49

               
               
               Conread position:6-203
               
               
               Cow position:chr9:44822302-44822498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):7, 118

               
               
               Conread position:6-204
               
               
               Cow position:chr9:2397829-2397633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):7, 122

               
               
               Conread position:6-204
               
               
               Cow position:chr9:14738271-14738076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):7, 116

               
               
               Conread position:6-212
               
               
               Cow position:chr9:34344631-34344426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):59, 13

               
               
               Conread position:6-218
               
               
               Cow position:chr9:44758909-44759116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 46

               
               
               Conread position:6-220
               
               
               Cow position:chr9:20828928-20828712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 168

               
               
               Conread position:6-220
               
               
               Cow position:chr9:42062121-42061900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-222
               
               
               Cow position:chr9:19034374-19034162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):59, 26

               
               
               Conread position:7-218
               
               
               Cow position:chr9:35403606-35403392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):25, 113

               
               
               Conread position:8-178
               
               
               Cow position:chr9:20637395-20637224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):7, 107

               
               
               Conread position:8-197
               
               
               Cow position:chr9:56032293-56032487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):7, 113

               
               
               Conread position:8-223
               
               
               Cow position:chr9:49213417-49213207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:9-222
               
               
               Cow position:chr9:16115592-16115800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):56, 16

               
               
               Conread position:10-184
               
               
               Cow position:chr9:53124111-53123929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:10-185
               
               
               Cow position:chr9:9815433-9815255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 159

               
               
               Conread position:10-185
               
               
               Cow position:chr9:55529817-55529645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 33

               
               
               Conread position:10-186
               
               
               Cow position:chr9:31346971-31346790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):16, 121

               
               
               Conread position:10-204
               
               
               Cow position:chr9:8834111-8834308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):57, 111

               
               
               Conread position:10-214
               
               
               Cow position:chr9:53631904-53632113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:10-217
               
               
               Cow position:chr9:8537321-8537118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:10-219
               
               
               Cow position:chr9:34423637-34423428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:166
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:10-225
               
               
               Cow position:chr9:54677281-54677065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):16, 190

               
               
               Conread position:10-228
               
               
               Cow position:chr9:35049495-35049280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):56, 19

               
               
               Conread position:11-184
               
               
               Cow position:chr9:37016912-37016742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):52, 14

               
               
               Conread position:11-213
               
               
               Cow position:chr9:34276189-34276398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 193

               
               
               Conread position:12-201
               
               
               Cow position:chr9:39709874-39709680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):8, 190

               
               
               Conread position:12-214
               
               
               Cow position:chr9:58673769-58673562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):19, 128

               
               
               Conread position:12-220
               
               
               Cow position:chr9:43345751-43345542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 13

               
               
               Conread position:12-236
               
               
               Cow position:chr9:26057417-26057637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:13-205
               
               
               Cow position:chr9:64629346-64629540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):13, 84

               
               
               Conread position:14-221
               
               
               Cow position:chr9:32662016-32662230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:14-224
               
               
               Cow position:chr9:35845001-35845212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):11, 6

               
               
               Conread position:16-177
               
               
               Cow position:chr9:46930467-46930310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):54, 9

               
               
               Conread position:16-201
               
               
               Cow position:chr9:36410337-36410524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 91

               
               
               Conread position:16-208
               
               
               Cow position:chr9:62145064-62144870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:16-231
               
               
               Cow position:chr9:13670642-13670432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):51, 8

               
               
               Conread position:18-219
               
               
               Cow position:chr9:37934228-37934429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 180

               
               
               Conread position:19-186
               
               
               Cow position:chr9:37955164-37955333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-192
               
               
               Cow position:chr9:34362745-34362571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):47, 93

               
               
               Conread position:19-204
               
               
               Cow position:chr9:59586318-59586138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):46, 99

               
               
               Conread position:19-212
               
               
               Cow position:chr9:22408766-22408571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):34, 97

               
               
               Conread position:19-214
               
               
               Cow position:chr9:44314699-44314896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):48, 92

               
               
               Conread position:19-215
               
               
               Cow position:chr9:8901220-8901417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 85

               
               
               Conread position:19-217
               
               
               Cow position:chr9:7543252-7543448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):34, 111

               
               
               Conread position:19-218
               
               
               Cow position:chr9:17785559-17785759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):45, 177

               
               
               Conread position:19-222
               
               
               Cow position:chr9:12786466-12786668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):47, 176

               
               
               Conread position:19-223
               
               
               Cow position:chr9:35729023-35729228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 199

               
               
               Conread position:19-223
               
               
               Cow position:chr9:45749444-45749237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):46, 95

               
               
               Conread position:19-228
               
               
               Cow position:chr9:58448112-58448327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):12, 183

               
               
               Conread position:20-219
               
               
               Cow position:chr9:5772672-5772873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:20-223
               
               
               Cow position:chr9:34964738-34964929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:21-208
               
               
               Cow position:chr9:57642512-57642332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:22-217
               
               
               Cow position:chr9:31694028-31694227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):45, 55

               
               
               Conread position:24-212
               
               
               Cow position:chr9:51011791-51011986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:24-219
               
               
               Cow position:chr9:61019360-61019556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:158
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):41, 174

               
               
               Conread position:24-226
               
               
               Cow position:chr9:26477218-26477013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:24-229
               
               
               Cow position:chr9:13141540-13141329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:25-188
               
               
               Cow position:chr9:10010811-10010651 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr9:36634508-36634332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-199
               
               
               Cow position:chr9:41283016-41282840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-200
               
               
               Cow position:chr9:41964734-41964905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:25-201
               
               
               Cow position:chr9:1403535-1403710 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):40, 18

               
               
               Conread position:25-201
               
               
               Cow position:chr9:53061663-53061479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-203
               
               
               Cow position:chr9:20017399-20017220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 93

               
               
               Conread position:25-203
               
               
               Cow position:chr9:63784913-63785085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 90

               
               
               Conread position:25-204
               
               
               Cow position:chr9:9311859-9311682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):38, 99

               
               
               Conread position:25-204
               
               
               Cow position:chr9:35547269-35547088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr9:35832618-35832791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:25-204
               
               
               Cow position:chr9:40270544-40270724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 66

               
               
               Conread position:25-204
               
               
               Cow position:chr9:44625213-44625042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chr9:52638166-52638346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-205
               
               
               Cow position:chr9:5068842-5068659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-208
               
               
               Cow position:chr9:8767415-8767596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 90

               
               
               Conread position:25-211
               
               
               Cow position:chr9:33597987-33597790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):42, 183

               
               
               Conread position:25-212
               
               
               Cow position:chr9:8613210-8613397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:25-212
               
               
               Cow position:chr9:22433927-22434111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):40, 132

               
               
               Conread position:25-212
               
               
               Cow position:chr9:60395047-60395232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:25-213
               
               
               Cow position:chr9:15805922-15806112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-213
               
               
               Cow position:chr9:42497822-42497644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:25-213
               
               
               Cow position:chr9:51037278-51037088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 164

               
               
               Conread position:25-215
               
               
               Cow position:chr9:20755759-20755948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):180, 36

               
               
               Conread position:25-215
               
               
               Cow position:chr9:34917184-34917364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):40, 87

               
               
               Conread position:25-216
               
               
               Cow position:chr9:647778-647588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 178

               
               
               Conread position:25-217
               
               
               Cow position:chr9:18817709-18817903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-217
               
               
               Cow position:chr9:26557969-26557775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-217
               
               
               Cow position:chr9:38941431-38941628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-217
               
               
               Cow position:chr9:51566494-51566683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):38, 164

               
               
               Conread position:25-218
               
               
               Cow position:chr9:28452167-28452357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 89

               
               
               Conread position:25-219
               
               
               Cow position:chr9:9091104-9091300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr9:6929790-6929988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-220
               
               
               Cow position:chr9:28747519-28747708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 86

               
               
               Conread position:25-220
               
               
               Cow position:chr9:38624623-38624817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):41, 151

               
               
               Conread position:25-220
               
               
               Cow position:chr9:44396663-44396463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-221
               
               
               Cow position:chr9:16811653-16811854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):39, 119

               
               
               Conread position:25-222
               
               
               Cow position:chr9:37950896-37951091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-222
               
               
               Cow position:chr9:39149080-39148890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):42, 101

               
               
               Conread position:25-223
               
               
               Cow position:chr9:16216982-16216779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 110

               
               
               Conread position:25-224
               
               
               Cow position:chr9:50977251-50977453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:25-225
               
               
               Cow position:chr9:1884129-1884339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-234
               
               
               Cow position:chr9:11309861-11309654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 162

               
               
               Conread position:26-208
               
               
               Cow position:chr9:17769318-17769142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 91

               
               
               Conread position:27-185
               
               
               Cow position:chr9:28342651-28342813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:28-181
               
               
               Cow position:chr9:29006555-29006405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 76

               
               
               Conread position:28-183
               
               
               Cow position:chr9:48115677-48115527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):36, 74

               
               
               Conread position:28-184
               
               
               Cow position:chr9:30402427-30402586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:28-186
               
               
               Cow position:chr9:54986157-54986320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:28-191
               
               
               Cow position:chr9:12225980-12226149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 51

               
               
               Conread position:28-192
               
               
               Cow position:chr9:63169970-63169804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 71

               
               
               Conread position:28-197
               
               
               Cow position:chr9:8468055-8467889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:28-197
               
               
               Cow position:chr9:12773688-12773524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:28-199
               
               
               Cow position:chr9:37199125-37198955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:28-200
               
               
               Cow position:chr9:13169665-13169838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:28-200
               
               
               Cow position:chr9:17634825-17634998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 83

               
               
               Conread position:28-200
               
               
               Cow position:chr9:34768623-34768450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):38, 125

               
               
               Conread position:28-202
               
               
               Cow position:chr9:40984503-40984329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:28-204
               
               
               Cow position:chr9:22638100-22637922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr9:34024697-34024523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:28-204
               
               
               Cow position:chr9:43341289-43341468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chr9:47590983-47591161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-207
               
               
               Cow position:chr9:40603666-40603489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-208
               
               
               Cow position:chr9:34374926-34375108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 68

               
               
               Conread position:28-208
               
               
               Cow position:chr9:52407162-52406989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:28-211
               
               
               Cow position:chr9:32052274-32052092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:28-213
               
               
               Cow position:chr9:34760366-34760552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):36, 91

               
               
               Conread position:28-214
               
               
               Cow position:chr9:6189367-6189548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):37, 57

               
               
               Conread position:28-214
               
               
               Cow position:chr9:35466524-35466711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):35, 176

               
               
               Conread position:28-215
               
               
               Cow position:chr9:12280969-12280784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:28-215
               
               
               Cow position:chr9:17027195-17027008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):39, 63

               
               
               Conread position:28-217
               
               
               Cow position:chr9:20237970-20238162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-217
               
               
               Cow position:chr9:23955982-23956165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):20, 24

               
               
               Conread position:28-218
               
               
               Cow position:chr9:6839991-6839800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):35, 84

               
               
               Conread position:28-218
               
               
               Cow position:chr9:11447810-11447997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-37
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:28-218
               
               
               Cow position:chr9:20451630-20451821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):35, 83

               
               
               Conread position:28-218
               
               
               Cow position:chr9:41728256-41728070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:28-219
               
               
               Cow position:chr9:3573464-3573270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-219
               
               
               Cow position:chr9:4263092-4263278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 67

               
               
               Conread position:28-219
               
               
               Cow position:chr9:34286797-34286605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:28-219
               
               
               Cow position:chr9:39061609-39061417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):178, 74

               
               
               Conread position:28-219
               
               
               Cow position:chr9:41644752-41644945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-220
               
               
               Cow position:chr9:12910403-12910594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):39, 64

               
               
               Conread position:28-220
               
               
               Cow position:chr9:40221188-40221378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 76

               
               
               Conread position:28-220
               
               
               Cow position:chr9:52689613-52689809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr9:17677112-17677312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-221
               
               
               Cow position:chr9:49863554-49863749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 178

               
               
               Conread position:28-223
               
               
               Cow position:chr9:10905819-10906015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:28-223
               
               
               Cow position:chr9:20681408-20681598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:28-223
               
               
               Cow position:chr9:26279171-26279371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-223
               
               
               Cow position:chr9:52030476-52030285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:28-224
               
               
               Cow position:chr9:43623266-43623066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-225
               
               
               Cow position:chr9:48730428-48730229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:28-225
               
               
               Cow position:chr9:63853208-63853009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 197

               
               
               Conread position:28-226
               
               
               Cow position:chr9:55013334-55013540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:28-227
               
               
               Cow position:chr9:6948993-6948792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 77

               
               
               Conread position:28-228
               
               
               Cow position:chr9:61022621-61022420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 87

               
               
               Conread position:28-233
               
               
               Cow position:chr9:38793014-38792810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):73, 37

               
               
               Conread position:29-183
               
               
               Cow position:chr9:18163358-18163513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:29-211
               
               
               Cow position:chr9:35209689-35209506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):36, 77

               
               
               Conread position:31-219
               
               
               Cow position:chr9:8998344-8998161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):34, 95

               
               
               Conread position:32-187
               
               
               Cow position:chr9:26578212-26578368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):72, 12

               
               
               Conread position:32-232
               
               
               Cow position:chr9:6447102-6446901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):35, 139

               
               
               Conread position:33-214
               
               
               Cow position:chr9:63185702-63185885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):33, 84

               
               
               Conread position:35-184
               
               
               Cow position:chr9:11199946-11200097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-207
               
               
               Cow position:chr9:13722147-13722318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 159

               
               
               Conread position:36-183
               
               
               Cow position:chr9:33542045-33541896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-185
               
               
               Cow position:chr9:1712716-1712866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr9:17276899-17277069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-204
               
               
               Cow position:chr9:51620435-51620267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:36-204
               
               
               Cow position:chr9:51891236-51891074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:36-213
               
               
               Cow position:chr9:27495227-27495047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:36-213
               
               
               Cow position:chr9:43352966-43352789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:36-214
               
               
               Cow position:chr9:21780914-21780737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:36-214
               
               
               Cow position:chr9:40507607-40507781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:36-218
               
               
               Cow position:chr9:8645256-8645077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):27, 147

               
               
               Conread position:36-218
               
               
               Cow position:chr9:23840404-23840598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-219
               
               
               Cow position:chr9:45141610-45141785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 88

               
               
               Conread position:36-223
               
               
               Cow position:chr9:26715245-26715057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):27, 67

               
               
               Conread position:36-223
               
               
               Cow position:chr9:35932824-35933012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):29, 91

               
               
               Conread position:36-223
               
               
               Cow position:chr9:48046530-48046343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):6, 164

               
               
               Conread position:36-224
               
               
               Cow position:chr9:1443627-1443814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):27, 134

               
               
               Conread position:36-224
               
               
               Cow position:chr9:27307892-27308072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):27, 54

               
               
               Conread position:37-212
               
               
               Cow position:chr9:56262117-56262294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:39-164
               
               
               Cow position:chr9:35360301-35360429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:39-186
               
               
               Cow position:chr9:14357402-14357253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-217
               
               
               Cow position:chr9:60741197-60741372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):28, 44

               
               
               Conread position:40-201
               
               
               Cow position:chr9:1984494-1984656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 18

               
               
               Conread position:40-207
               
               
               Cow position:chr9:49680100-49679932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):23, 156

               
               
               Conread position:40-208
               
               
               Cow position:chr9:24748665-24748494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-213
               
               
               Cow position:chr9:22309183-22309016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:40-214
               
               
               Cow position:chr9:18425898-18425721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-218
               
               
               Cow position:chr9:19656990-19657164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):26, 73

               
               
               Conread position:40-222
               
               
               Cow position:chr9:29984450-29984267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):25, 172

               
               
               Conread position:40-222
               
               
               Cow position:chr9:40303153-40303328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:40-222
               
               
               Cow position:chr9:47510584-47510763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-224
               
               
               Cow position:chr9:8997546-8997357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:42-198
               
               
               Cow position:chr9:20942632-20942790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:42-199
               
               
               Cow position:chr9:55284360-55284512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:42-204
               
               
               Cow position:chr9:53323800-53323964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:42-214
               
               
               Cow position:chr9:53139148-53139320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):23, 152

               
               
               Conread position:45-222
               
               
               Cow position:chr9:18816055-18815873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):64, 129

               
               
               Conread position:50-201
               
               
               Cow position:chr9:16826219-16826376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-202
               
               
               Cow position:chr9:20355843-20355693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 27

               
               
               Conread position:50-204
               
               
               Cow position:chr9:45711024-45711180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:50-204
               
               
               Cow position:chr9:58440399-58440560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):15, 103

               
               
               Conread position:50-211
               
               
               Cow position:chr9:48367550-48367711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):15, 145

               
               
               Conread position:50-219
               
               
               Cow position:chr9:30194987-30194822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 63

               
               
               Conread position:50-223
               
               
               Cow position:chr9:7611815-7611982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):17, 76

               
               
               Conread position:50-223
               
               
               Cow position:chr9:35435046-35435220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:50-223
               
               
               Cow position:chr9:50703355-50703531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:51-204
               
               
               Cow position:chr9:39142389-39142541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):13, 126

               
               
               Conread position:52-218
               
               
               Cow position:chr9:29091748-29091580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):11, 147

               
               
               Conread position:53-223
               
               
               Cow position:chr9:11506270-11506100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 112

               
               
               Conread position:60-214
               
               
               Cow position:chr9:59172976-59173131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:60-221
               
               
               Cow position:chr9:31216044-31215882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):142, 54

               
               
               Conread position:61-218
               
               
               Cow position:chr9:7805744-7805592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):137, 50

               
               
               Conread position:62-183
               
               
               Cow position:chr9:18215947-18216068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:62-188
               
               
               Cow position:chr9:6667685-6667811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-192
               
               
               Cow position:chr9:33389065-33389194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:62-200
               
               
               Cow position:chr9:6340721-6340859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr9:12495179-12495040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-201
               
               
               Cow position:chr9:62136152-62136290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr9:3356792-3356934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-204
               
               
               Cow position:chr9:52736911-52736772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):42, 18

               
               
               Conread position:62-212
               
               
               Cow position:chr9:1751300-1751143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:62-213
               
               
               Cow position:chr9:2985033-2984883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:62-213
               
               
               Cow position:chr9:54639856-54640003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr9:36453577-36453723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:62-214
               
               
               Cow position:chr9:55173676-55173828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):140, 19

               
               
               Conread position:62-218
               
               
               Cow position:chr9:20394353-20394506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):95, 57

               
               
               Conread position:62-219
               
               
               Cow position:chr9:45104340-45104501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):27, 153

               
               
               Conread position:62-219
               
               
               Cow position:chr9:50648029-50647876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 61

               
               
               Conread position:62-220
               
               
               Cow position:chr9:34196155-34196003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:62-224
               
               
               Cow position:chr9:45170419-45170584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-34
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:62-225
               
               
               Cow position:chr9:14236183-14236021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:62-233
               
               
               Cow position:chr9:51592005-51592175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):39, 148

               
               
               Conread position:62-234
               
               
               Cow position:chr9:39142810-39142643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:63-174
               
               
               Cow position:chr9:1841536-1841425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-185
               
               
               Cow position:chr9:64310815-64310937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:93
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:63-216
               
               
               Cow position:chr9:22447333-22447481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:63-218
               
               
               Cow position:chr9:34399632-34399482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:63-220
               
               
               Cow position:chr9:31626095-31625939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:63-223
               
               
               Cow position:chr9:14956981-14956821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):146, 90

               
               
               Conread position:63-224
               
               
               Cow position:chr9:3946187-3946343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:63-224
               
               
               Cow position:chr9:51609236-51609082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):137, 41

               
               
               Conread position:64-204
               
               
               Cow position:chr9:52130975-52130835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-208
               
               
               Cow position:chr9:48343935-48344079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:65-216
               
               
               Cow position:chr9:901480-901629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:65-220
               
               
               Cow position:chr9:16770960-16770800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 149

               
               
               Conread position:66-217
               
               
               Cow position:chr9:32019366-32019517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-223
               
               
               Cow position:chr9:34875205-34875370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:69-221
               
               
               Cow position:chr9:58232366-58232517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:72-222
               
               
               Cow position:chr9:63711113-63710963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 125

               
               
               Conread position:72-226
               
               
               Cow position:chr9:42043778-42043935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:75-205
               
               
               Cow position:chr9:6205392-6205523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:80-192
               
               
               Cow position:chr9:34034215-34034105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:80-223
               
               
               Cow position:chr9:6687642-6687500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:80-240
               
               
               Cow position:chr9:60138739-60138584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):153, 83

               
               
               Conread position:81-175
               
               
               Cow position:chr9:10133094-10133188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:95
               
               
               Alignm identity:83
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:81-200
               
               
               Cow position:chr9:39551834-39551955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):64, 81

               
               
               Conread position:82-199
               
               
               Cow position:chr9:38370419-38370304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:82-211
               
               
               Cow position:chr9:1930684-1930556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:82-219
               
               
               Cow position:chr9:28156645-28156508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-204
               
               
               Cow position:chr9:5399405-5399287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 109

               
               
               Conread position:85-226
               
               
               Cow position:chr9:28866151-28866288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:88-204
               
               
               Cow position:chr9:6726986-6726870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 97

               
               
               Conread position:88-218
               
               
               Cow position:chr9:51019119-51018989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:88-222
               
               
               Cow position:chr9:11216238-11216370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:108
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:89-213
               
               
               Cow position:chr9:52651554-52651677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:89-215
               
               
               Cow position:chr9:9431998-9431876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:90-186
               
               
               Cow position:chr9:56318009-56317913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:80
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:91-182
               
               
               Cow position:chr9:5434263-5434172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:92
               
               
               Alignm identity:80
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:93-185
               
               
               Cow position:chr9:8735719-8735627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:93
               
               
               Alignm identity:78
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:94-224
               
               
               Cow position:chr9:35491365-35491237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:102-217
               
               
               Cow position:chr9:38962138-38962253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):104, 50

               
               
               Conread position:103-227
               
               
               Cow position:chr9:48809070-48808948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:104-218
               
               
               Cow position:chr9:41995675-41995562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:117-230
               
               
               Cow position:chr9:36849539-36849423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:119-223
               
               
               Cow position:chr9:13176469-13176574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-185
               
               
               Cow position:chrX:10831461-10831265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-192
               
               
               Cow position:chrX:20168587-20168778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):30, 12

               
               
               Conread position:1-204
               
               
               Cow position:chrX:17524355-17524150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):12, 196

               
               
               Conread position:1-204
               
               
               Cow position:chrX:37489748-37489964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):11, 88

               
               
               Conread position:1-213
               
               
               Cow position:chrX:27261220-27261432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:1-214
               
               
               Cow position:chrX:11781282-11781491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):12, 66

               
               
               Conread position:1-217
               
               
               Cow position:chrX:32574348-32574570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 136

               
               
               Conread position:1-218
               
               
               Cow position:chrX:25815872-25815650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:171
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):12, 91

               
               
               Conread position:1-218
               
               
               Cow position:chrX:41941652-41941872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):19, 12

               
               
               Conread position:1-219
               
               
               Cow position:chrX:44995527-44995760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:1-220
               
               
               Cow position:chrX:27705615-27705836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 155

               
               
               Conread position:1-221
               
               
               Cow position:chrX:29601799-29601578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:1-221
               
               
               Cow position:chrX:41790400-41790176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):12, 138

               
               
               Conread position:1-223
               
               
               Cow position:chrX:27511457-27511676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:1-223
               
               
               Cow position:chrX:41027188-41027412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):19, 13

               
               
               Conread position:1-225
               
               
               Cow position:chrX:32877346-32877119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):12, 113

               
               
               Conread position:2-192
               
               
               Cow position:chrX:8326934-8327128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):18, 12

               
               
               Conread position:2-192
               
               
               Cow position:chrX:42836213-42836404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):63, 112

               
               
               Conread position:2-206
               
               
               Cow position:chrX:38301839-38302051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):17, 12

               
               
               Conread position:2-218
               
               
               Cow position:chrX:34565316-34565534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 48

               
               
               Conread position:3-181
               
               
               Cow position:chrX:12309359-12309173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-197
               
               
               Cow position:chrX:4109211-4109413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-199
               
               
               Cow position:chrX:296427-296622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):62, 22

               
               
               Conread position:3-201
               
               
               Cow position:chrX:6559421-6559223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):53, 22

               
               
               Conread position:3-204
               
               
               Cow position:chrX:25035355-25035147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):23, 197

               
               
               Conread position:3-205
               
               
               Cow position:chrX:34398757-34398549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):20, 198

               
               
               Conread position:3-208
               
               
               Cow position:chrX:44339294-44339082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 175

               
               
               Conread position:3-210
               
               
               Cow position:chrX:26493033-26493249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:3-213
               
               
               Cow position:chrX:24331803-24332020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):23, 201

               
               
               Conread position:3-213
               
               
               Cow position:chrX:25207828-25207619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):23, 107

               
               
               Conread position:3-214
               
               
               Cow position:chrX:1175955-1175743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):23, 67

               
               
               Conread position:3-214
               
               
               Cow position:chrX:31250415-31250634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):23, 209

               
               
               Conread position:3-214
               
               
               Cow position:chrX:35392267-35392062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:3-215
               
               
               Cow position:chrX:36866200-36866420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):22, 80

               
               
               Conread position:3-216
               
               
               Cow position:chrX:13923891-13924106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 129

               
               
               Conread position:3-217
               
               
               Cow position:chrX:34420761-34420983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):23, 193

               
               
               Conread position:3-220
               
               
               Cow position:chrX:33654817-33654592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-223
               
               
               Cow position:chrX:3579971-3580196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):23, 201

               
               
               Conread position:3-223
               
               
               Cow position:chrX:11825617-11825389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-223
               
               
               Cow position:chrX:38935308-38935535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):24, 84

               
               
               Conread position:3-224
               
               
               Cow position:chrX:15147166-15146946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:3-224
               
               
               Cow position:chrX:46587849-46588075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):16, 124

               
               
               Conread position:3-227
               
               
               Cow position:chrX:19717548-19717771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 106

               
               
               Conread position:3-228
               
               
               Cow position:chrX:7648383-7648154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 84

               
               
               Conread position:4-182
               
               
               Cow position:chrX:28878146-28877953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-185
               
               
               Cow position:chrX:41810140-41809959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):21, 124

               
               
               Conread position:4-185
               
               
               Cow position:chrX:48822308-48822126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 22

               
               
               Conread position:4-192
               
               
               Cow position:chrX:31489548-31489744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:4-196
               
               
               Cow position:chrX:35268893-35269083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):22, 131

               
               
               Conread position:4-197
               
               
               Cow position:chrX:31294540-31294340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:4-198
               
               
               Cow position:chrX:19356497-19356693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:4-199
               
               
               Cow position:chrX:40336945-40337141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:4-200
               
               
               Cow position:chrX:38094488-38094295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):22, 31

               
               
               Conread position:4-201
               
               
               Cow position:chrX:13868730-13868936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):17, 109

               
               
               Conread position:4-201
               
               
               Cow position:chrX:16762799-16763000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 111

               
               
               Conread position:4-201
               
               
               Cow position:chrX:27416124-27416327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):27, 15

               
               
               Conread position:4-201
               
               
               Cow position:chrX:40680642-40680845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):19, 197

               
               
               Conread position:4-201
               
               
               Cow position:chrX:48558776-48558977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):10, 151

               
               
               Conread position:4-202
               
               
               Cow position:chrX:38964136-38964328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 126

               
               
               Conread position:4-204
               
               
               Cow position:chrX:16323986-16323781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 196

               
               
               Conread position:4-204
               
               
               Cow position:chrX:19018803-19018594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):22, 202

               
               
               Conread position:4-207
               
               
               Cow position:chrX:34222750-34222951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):13, 22

               
               
               Conread position:4-208
               
               
               Cow position:chrX:3806710-3806916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:4-214
               
               
               Cow position:chrX:35276019-35276232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-215
               
               
               Cow position:chrX:45875422-45875637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):11, 52

               
               
               Conread position:4-216
               
               
               Cow position:chrX:42331312-42331520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):22, 113

               
               
               Conread position:4-217
               
               
               Cow position:chrX:7351328-7351547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):22, 173

               
               
               Conread position:4-218
               
               
               Cow position:chrX:17956721-17956938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):27, 50

               
               
               Conread position:4-219
               
               
               Cow position:chrX:44054836-44055053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 7

               
               
               Conread position:4-220
               
               
               Cow position:chrX:41878902-41878688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):16, 153

               
               
               Conread position:4-220
               
               
               Cow position:chrX:46909843-46910059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):21, 128

               
               
               Conread position:4-222
               
               
               Cow position:chrX:4559767-4559987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):19, 33

               
               
               Conread position:4-223
               
               
               Cow position:chrX:35658827-35659047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):32, 21

               
               
               Conread position:4-223
               
               
               Cow position:chrX:42449986-42449760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:174
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):19, 214

               
               
               Conread position:4-225
               
               
               Cow position:chrX:26205420-26205202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 114

               
               
               Conread position:4-226
               
               
               Cow position:chrX:24170701-24170467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:4-226
               
               
               Cow position:chrX:27446714-27446937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):22, 140

               
               
               Conread position:5-192
               
               
               Cow position:chrX:28850758-28850941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):61, 109

               
               
               Conread position:5-192
               
               
               Cow position:chrX:35681601-35681790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):15, 108

               
               
               Conread position:5-204
               
               
               Cow position:chrX:37129298-37129504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 169

               
               
               Conread position:5-205
               
               
               Cow position:chrX:32330200-32330407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:5-216
               
               
               Cow position:chrX:4399154-4399360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):31, 22

               
               
               Conread position:5-220
               
               
               Cow position:chrX:51867-51653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:161
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):21, 109

               
               
               Conread position:6-185
               
               
               Cow position:chrX:27228160-27228345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:6-192
               
               
               Cow position:chrX:27075017-27074828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):7, 102

               
               
               Conread position:6-195
               
               
               Cow position:chrX:10516285-10516480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:6-217
               
               
               Cow position:chrX:4091958-4092170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:155
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):7, 164

               
               
               Conread position:6-223
               
               
               Cow position:chrX:30133284-30133069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):7, 96

               
               
               Conread position:6-226
               
               
               Cow position:chrX:17498356-17498583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:7-227
               
               
               Cow position:chrX:14925307-14925532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:8-185
               
               
               Cow position:chrX:4645879-4645698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):7, 102

               
               
               Conread position:8-204
               
               
               Cow position:chrX:32821066-32821275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:8-204
               
               
               Cow position:chrX:36356146-36356340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):61, 32

               
               
               Conread position:8-221
               
               
               Cow position:chrX:32420248-32420461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):5, 100

               
               
               Conread position:8-223
               
               
               Cow position:chrX:2674922-2674697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:8-223
               
               
               Cow position:chrX:42311705-42311918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 37

               
               
               Conread position:9-213
               
               
               Cow position:chrX:42461579-42461381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):197, 56

               
               
               Conread position:9-220
               
               
               Cow position:chrX:44040216-44040427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):58, 26

               
               
               Conread position:10-192
               
               
               Cow position:chrX:1122509-1122324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):11, 168

               
               
               Conread position:10-204
               
               
               Cow position:chrX:27175037-27175235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:10-213
               
               
               Cow position:chrX:37749949-37749752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 116

               
               
               Conread position:10-220
               
               
               Cow position:chrX:39555639-39555427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:10-225
               
               
               Cow position:chrX:5063285-5063492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:11-179
               
               
               Cow position:chrX:35542930-35543094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):56, 8

               
               
               Conread position:11-214
               
               
               Cow position:chrX:23359076-23358874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 116

               
               
               Conread position:12-192
               
               
               Cow position:chrX:22552936-22552756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 9

               
               
               Conread position:12-205
               
               
               Cow position:chrX:37867295-37867490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:12-215
               
               
               Cow position:chrX:23335933-23335731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):53, 7

               
               
               Conread position:13-218
               
               
               Cow position:chrX:37867475-37867682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:16-192
               
               
               Cow position:chrX:11653817-11653990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:16-199
               
               
               Cow position:chrX:32910151-32910327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:16-204
               
               
               Cow position:chrX:19660410-19660219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 9

               
               
               Conread position:16-204
               
               
               Cow position:chrX:20339845-20339660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:153
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:16-217
               
               
               Cow position:chrX:27508975-27508778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):94, 9

               
               
               Conread position:16-218
               
               
               Cow position:chrX:38218761-38218961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):51, 6

               
               
               Conread position:16-220
               
               
               Cow position:chrX:4632811-4632606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 184

               
               
               Conread position:19-184
               
               
               Cow position:chrX:16007709-16007542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:19-185
               
               
               Cow position:chrX:10237864-10237697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):44, 85

               
               
               Conread position:19-191
               
               
               Cow position:chrX:42855507-42855685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-192
               
               
               Cow position:chrX:23497642-23497474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:19-200
               
               
               Cow position:chrX:40035391-40035206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:19-201
               
               
               Cow position:chrX:21327962-21328144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):46, 175

               
               
               Conread position:19-204
               
               
               Cow position:chrX:5097750-5097560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):34, 163

               
               
               Conread position:19-204
               
               
               Cow position:chrX:6407593-6407779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):46, 31

               
               
               Conread position:19-204
               
               
               Cow position:chrX:43150480-43150666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):46, 76

               
               
               Conread position:19-213
               
               
               Cow position:chrX:35285222-35285420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:19-214
               
               
               Cow position:chrX:5118449-5118254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):48, 87

               
               
               Conread position:19-219
               
               
               Cow position:chrX:39427250-39427046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 189

               
               
               Conread position:19-220
               
               
               Cow position:chrX:44192398-44192191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:19-223
               
               
               Cow position:chrX:42492474-42492265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):46, 73

               
               
               Conread position:19-223
               
               
               Cow position:chrX:44225682-44225475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 170

               
               
               Conread position:20-211
               
               
               Cow position:chrX:10278921-10279115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:20-214
               
               
               Cow position:chrX:20957288-20957480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):47, 169

               
               
               Conread position:20-221
               
               
               Cow position:chrX:21672611-21672817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:20-223
               
               
               Cow position:chrX:33466675-33466875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):45, 15

               
               
               Conread position:21-225
               
               
               Cow position:chrX:16927413-16927207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 22

               
               
               Conread position:23-223
               
               
               Cow position:chrX:43658819-43658615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:24-192
               
               
               Cow position:chrX:28106901-28107069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 102

               
               
               Conread position:24-199
               
               
               Cow position:chrX:23485575-23485760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:24-201
               
               
               Cow position:chrX:40108464-40108281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 72

               
               
               Conread position:24-213
               
               
               Cow position:chrX:38967943-38968141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 26

               
               
               Conread position:24-218
               
               
               Cow position:chrX:41674158-41674346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):41, 107

               
               
               Conread position:24-219
               
               
               Cow position:chrX:16770118-16770313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):41, 164

               
               
               Conread position:24-221
               
               
               Cow position:chrX:26882026-26881826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-39
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:24-221
               
               
               Cow position:chrX:41199278-41199472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:24-222
               
               
               Cow position:chrX:41435495-41435290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):41, 180

               
               
               Conread position:25-160
               
               
               Cow position:chrX:31252463-31252599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):23, 27

               
               
               Conread position:25-178
               
               
               Cow position:chrX:19795449-19795300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 42

               
               
               Conread position:25-184
               
               
               Cow position:chrX:13144501-13144662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-185
               
               
               Cow position:chrX:8731149-8731310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 7

               
               
               Conread position:25-186
               
               
               Cow position:chrX:34543839-34544003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-191
               
               
               Cow position:chrX:41166770-41166607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):41, 70

               
               
               Conread position:25-192
               
               
               Cow position:chrX:39220134-39220311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:25-192
               
               
               Cow position:chrX:46532440-46532267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-199
               
               
               Cow position:chrX:27415525-27415359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:25-199
               
               
               Cow position:chrX:42432453-42432284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 25

               
               
               Conread position:25-201
               
               
               Cow position:chrX:4602886-4602706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 28

               
               
               Conread position:25-201
               
               
               Cow position:chrX:18873208-18873029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:25-201
               
               
               Cow position:chrX:36283395-36283571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 65

               
               
               Conread position:25-201
               
               
               Cow position:chrX:38549502-38549678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):41, 112

               
               
               Conread position:25-202
               
               
               Cow position:chrX:20583721-20583893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 98

               
               
               Conread position:25-203
               
               
               Cow position:chrX:41454899-41454720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-204
               
               
               Cow position:chrX:2314564-2314383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-204
               
               
               Cow position:chrX:8759681-8759858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:25-204
               
               
               Cow position:chrX:29451496-29451310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-204
               
               
               Cow position:chrX:36976006-36976189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-204
               
               
               Cow position:chrX:37752051-37751876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):41, 87

               
               
               Conread position:25-207
               
               
               Cow position:chrX:46533250-46533066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-208
               
               
               Cow position:chrX:24365766-24365583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:25-208
               
               
               Cow position:chrX:42760307-42760490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):41, 171

               
               
               Conread position:25-211
               
               
               Cow position:chrX:6634399-6634587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-211
               
               
               Cow position:chrX:15100038-15100221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):42, 102

               
               
               Conread position:25-212
               
               
               Cow position:chrX:8917449-8917636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):40, 170

               
               
               Conread position:25-212
               
               
               Cow position:chrX:34441399-34441210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-212
               
               
               Cow position:chrX:35431184-35430999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 55

               
               
               Conread position:25-213
               
               
               Cow position:chrX:11633737-11633927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):41, 86

               
               
               Conread position:25-213
               
               
               Cow position:chrX:12290774-12290962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):40, 101

               
               
               Conread position:25-213
               
               
               Cow position:chrX:27442484-27442295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):41, 173

               
               
               Conread position:25-213
               
               
               Cow position:chrX:30672341-30672142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):24, 175

               
               
               Conread position:25-214
               
               
               Cow position:chrX:42875267-42875452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:25-214
               
               
               Cow position:chrX:44123310-44123494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 104

               
               
               Conread position:25-214
               
               
               Cow position:chrX:46068704-46068514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):41, 89

               
               
               Conread position:25-215
               
               
               Cow position:chrX:24425947-24425757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 167

               
               
               Conread position:25-215
               
               
               Cow position:chrX:31983530-31983334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 176

               
               
               Conread position:25-215
               
               
               Cow position:chrX:33020492-33020685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:25-216
               
               
               Cow position:chrX:42086883-42087073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):41, 11

               
               
               Conread position:25-217
               
               
               Cow position:chrX:14951298-14951106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 94

               
               
               Conread position:25-217
               
               
               Cow position:chrX:19203291-19203098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 173

               
               
               Conread position:25-217
               
               
               Cow position:chrX:27270430-27270618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):40, 99

               
               
               Conread position:25-218
               
               
               Cow position:chrX:1101612-1101798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:25-218
               
               
               Cow position:chrX:1960370-1960175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):41, 105

               
               
               Conread position:25-218
               
               
               Cow position:chrX:4403372-4403567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-218
               
               
               Cow position:chrX:28940297-28940491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):33, 95

               
               
               Conread position:25-219
               
               
               Cow position:chrX:10415198-10415007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-219
               
               
               Cow position:chrX:11454241-11454424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):114, 41

               
               
               Conread position:25-220
               
               
               Cow position:chrX:26843214-26843013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-220
               
               
               Cow position:chrX:40574888-40574692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):41, 93

               
               
               Conread position:25-221
               
               
               Cow position:chrX:35409807-35410003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):40, 47

               
               
               Conread position:25-222
               
               
               Cow position:chrX:597419-597226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:25-223
               
               
               Cow position:chrX:1553024-1553232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:25-223
               
               
               Cow position:chrX:12095717-12095519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):40, 173

               
               
               Conread position:25-223
               
               
               Cow position:chrX:18485858-18486054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 74

               
               
               Conread position:25-223
               
               
               Cow position:chrX:39180178-39179975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):42, 166

               
               
               Conread position:25-223
               
               
               Cow position:chrX:42893981-42894172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 110

               
               
               Conread position:25-224
               
               
               Cow position:chrX:37955902-37956100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):40, 145

               
               
               Conread position:25-225
               
               
               Cow position:chrX:4328128-4327928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-32
               
               
               Alignm gaps (pig, cow):35, 70

               
               
               Conread position:25-225
               
               
               Cow position:chrX:6389136-6389336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:25-225
               
               
               Cow position:chrX:16541602-16541398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-225
               
               
               Cow position:chrX:36367880-36367676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:25-225
               
               
               Cow position:chrX:41453357-41453554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 105

               
               
               Conread position:25-231
               
               
               Cow position:chrX:876787-876590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:25-233
               
               
               Cow position:chrX:11517925-11517718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):40, 171

               
               
               Conread position:25-238
               
               
               Cow position:chrX:8642101-8642309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:26-200
               
               
               Cow position:chrX:21663350-21663526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:26-202
               
               
               Cow position:chrX:40648951-40649135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-185
               
               
               Cow position:chrX:31986516-31986356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 80

               
               
               Conread position:28-186
               
               
               Cow position:chrX:40685270-40685112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:28-196
               
               
               Cow position:chrX:19761812-19761976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 98

               
               
               Conread position:28-199
               
               
               Cow position:chrX:5915246-5915421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-199
               
               
               Cow position:chrX:30922229-30922402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-200
               
               
               Cow position:chrX:9252105-9251932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:28-200
               
               
               Cow position:chrX:15485576-15485402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-200
               
               
               Cow position:chrX:17293013-17293187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-203
               
               
               Cow position:chrX:32020076-32019899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-204
               
               
               Cow position:chrX:13147039-13147219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:28-204
               
               
               Cow position:chrX:18030359-18030181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-205
               
               
               Cow position:chrX:16556159-16555989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:28-213
               
               
               Cow position:chrX:11656139-11656322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:28-214
               
               
               Cow position:chrX:18439054-18439243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-214
               
               
               Cow position:chrX:31729500-31729682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):35, 98

               
               
               Conread position:28-215
               
               
               Cow position:chrX:31948877-31948687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:28-216
               
               
               Cow position:chrX:46546817-46546624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-217
               
               
               Cow position:chrX:8869344-8869158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):39, 90

               
               
               Conread position:28-217
               
               
               Cow position:chrX:40320464-40320655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):38, 161

               
               
               Conread position:28-218
               
               
               Cow position:chrX:2936015-2936201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 84

               
               
               Conread position:28-218
               
               
               Cow position:chrX:20887583-20887403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):37, 99

               
               
               Conread position:28-218
               
               
               Cow position:chrX:32747790-32747973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 88

               
               
               Conread position:28-218
               
               
               Cow position:chrX:34411904-34412094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 168

               
               
               Conread position:28-219
               
               
               Cow position:chrX:18111436-18111632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chrX:20345508-20345702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chrX:22115259-22115066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 169

               
               
               Conread position:28-219
               
               
               Cow position:chrX:27668900-27668712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):39, 102

               
               
               Conread position:28-219
               
               
               Cow position:chrX:28067908-28068102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-219
               
               
               Cow position:chrX:35885669-35885484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 98

               
               
               Conread position:28-221
               
               
               Cow position:chrX:1396174-1396375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-221
               
               
               Cow position:chrX:4269006-4268819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:28-221
               
               
               Cow position:chrX:8493124-8493315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 150

               
               
               Conread position:28-221
               
               
               Cow position:chrX:43008667-43008863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-222
               
               
               Cow position:chrX:17949435-17949241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):38, 170

               
               
               Conread position:28-222
               
               
               Cow position:chrX:34504991-34504800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 68

               
               
               Conread position:28-223
               
               
               Cow position:chrX:6599724-6599521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):39, 175

               
               
               Conread position:28-223
               
               
               Cow position:chrX:26979731-26979535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):35, 28

               
               
               Conread position:28-223
               
               
               Cow position:chrX:30962819-30962622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):35, 184

               
               
               Conread position:28-223
               
               
               Cow position:chrX:31436532-31436722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 89

               
               
               Conread position:28-223
               
               
               Cow position:chrX:32191115-32190918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:28-223
               
               
               Cow position:chrX:33000963-33001153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):39, 87

               
               
               Conread position:28-223
               
               
               Cow position:chrX:36109558-36109359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:28-223
               
               
               Cow position:chrX:47100539-47100342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):36, 78

               
               
               Conread position:28-225
               
               
               Cow position:chrX:42247124-42246924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:157
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:28-229
               
               
               Cow position:chrX:17231793-17232000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:28-232
               
               
               Cow position:chrX:3605938-3606145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:29-203
               
               
               Cow position:chrX:13121997-13122177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):36, 174

               
               
               Conread position:29-204
               
               
               Cow position:chrX:9201608-9201778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):38, 7

               
               
               Conread position:29-204
               
               
               Cow position:chrX:26881506-26881327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):38, 63

               
               
               Conread position:29-214
               
               
               Cow position:chrX:15545941-15546127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:29-215
               
               
               Cow position:chrX:41062288-41062481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:29-217
               
               
               Cow position:chrX:40826692-40826500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-218
               
               
               Cow position:chrX:22283896-22284086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 167

               
               
               Conread position:29-218
               
               
               Cow position:chrX:48198588-48198399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):34, 116

               
               
               Conread position:29-219
               
               
               Cow position:chrX:48071220-48071413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-220
               
               
               Cow position:chrX:24336018-24335822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:29-223
               
               
               Cow position:chrX:46793687-46793495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 77

               
               
               Conread position:29-223
               
               
               Cow position:chrX:48010663-48010860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:29-226
               
               
               Cow position:chrX:3032984-3032785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 184

               
               
               Conread position:32-220
               
               
               Cow position:chrX:25049220-25049029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-192
               
               
               Cow position:chrX:48574294-48574131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:33-223
               
               
               Cow position:chrX:10421757-10421560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 8

               
               
               Conread position:35-186
               
               
               Cow position:chrX:34554788-34554941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:35-212
               
               
               Cow position:chrX:16801198-16801026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:35-218
               
               
               Cow position:chrX:34194016-34193832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):31, 163

               
               
               Conread position:35-223
               
               
               Cow position:chrX:1938079-1938265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:36-185
               
               
               Cow position:chrX:15597093-15597244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-189
               
               
               Cow position:chrX:34238785-34238943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-192
               
               
               Cow position:chrX:6640493-6640647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:36-192
               
               
               Cow position:chrX:33678407-33678247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:36-198
               
               
               Cow position:chrX:9451411-9451570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):29, 43

               
               
               Conread position:36-199
               
               
               Cow position:chrX:25347124-25347289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-200
               
               
               Cow position:chrX:25846007-25845842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):30, 68

               
               
               Conread position:36-204
               
               
               Cow position:chrX:22813128-22813300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:36-213
               
               
               Cow position:chrX:36468303-36468123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 151

               
               
               Conread position:36-214
               
               
               Cow position:chrX:23563725-23563545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-214
               
               
               Cow position:chrX:43050135-43050315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):62, 102

               
               
               Conread position:36-217
               
               
               Cow position:chrX:24104905-24105093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-219
               
               
               Cow position:chrX:31250829-31250645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 175

               
               
               Conread position:36-223
               
               
               Cow position:chrX:1121301-1121110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:36-224
               
               
               Cow position:chrX:4169965-4169770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 63

               
               
               Conread position:36-224
               
               
               Cow position:chrX:47855047-47855233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):28, 97

               
               
               Conread position:37-200
               
               
               Cow position:chrX:6480530-6480364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:37-219
               
               
               Cow position:chrX:41858816-41858633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 82

               
               
               Conread position:39-204
               
               
               Cow position:chrX:11589298-11589133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):27, 99

               
               
               Conread position:39-205
               
               
               Cow position:chrX:45044521-45044690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:39-225
               
               
               Cow position:chrX:35840867-35841050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):27, 169

               
               
               Conread position:40-185
               
               
               Cow position:chrX:11813143-11813290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-188
               
               
               Cow position:chrX:37856428-37856580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:40-204
               
               
               Cow position:chrX:3494975-3494815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 24

               
               
               Conread position:40-213
               
               
               Cow position:chrX:16763855-16763686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):25, 81

               
               
               Conread position:40-216
               
               
               Cow position:chrX:32215298-32215476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:40-223
               
               
               Cow position:chrX:34270631-34270816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):25, 101

               
               
               Conread position:41-202
               
               
               Cow position:chrX:10252129-10251969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 71

               
               
               Conread position:41-223
               
               
               Cow position:chrX:35509608-35509427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):25, 75

               
               
               Conread position:42-204
               
               
               Cow position:chrX:45657868-45657701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):24, 158

               
               
               Conread position:42-214
               
               
               Cow position:chrX:10154975-10154801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 25

               
               
               Conread position:50-192
               
               
               Cow position:chrX:27202650-27202792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 76

               
               
               Conread position:50-199
               
               
               Cow position:chrX:11602405-11602257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):16, 118

               
               
               Conread position:50-220
               
               
               Cow position:chrX:26720602-26720441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):15, 71

               
               
               Conread position:50-225
               
               
               Cow position:chrX:11670766-11670942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):16, 161

               
               
               Conread position:50-225
               
               
               Cow position:chrX:34108278-34108102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 101

               
               
               Conread position:50-225
               
               
               Cow position:chrX:42216549-42216378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 41

               
               
               Conread position:53-204
               
               
               Cow position:chrX:46893183-46893334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 133

               
               
               Conread position:53-219
               
               
               Cow position:chrX:42506866-42506699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):12, 144

               
               
               Conread position:53-220
               
               
               Cow position:chrX:43028315-43028479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):14, 63

               
               
               Conread position:54-204
               
               
               Cow position:chrX:1996368-1996216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:57-217
               
               
               Cow position:chrX:5134561-5134724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 33

               
               
               Conread position:61-220
               
               
               Cow position:chrX:29723844-29723998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:61-223
               
               
               Cow position:chrX:1571496-1571339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):136, 65

               
               
               Conread position:62-180
               
               
               Cow position:chrX:25049007-25048891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:62-185
               
               
               Cow position:chrX:44702972-44702849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-196
               
               
               Cow position:chrX:29478817-29478949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:62-199
               
               
               Cow position:chrX:10479843-10479980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-201
               
               
               Cow position:chrX:3542950-3543095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):62, 139

               
               
               Conread position:62-204
               
               
               Cow position:chrX:17929095-17929232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:62-204
               
               
               Cow position:chrX:42516036-42515895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-205
               
               
               Cow position:chrX:35614690-35614833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-207
               
               
               Cow position:chrX:26367609-26367464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:62-211
               
               
               Cow position:chrX:39887120-39886972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):51, 129

               
               
               Conread position:62-212
               
               
               Cow position:chrX:30789437-30789288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):48, 135

               
               
               Conread position:62-213
               
               
               Cow position:chrX:42050176-42050023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:62-215
               
               
               Cow position:chrX:37717815-37717965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:62-219
               
               
               Cow position:chrX:870088-869932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:62-220
               
               
               Cow position:chrX:11674204-11674361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):40, 135

               
               
               Conread position:62-223
               
               
               Cow position:chrX:5075675-5075505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:62-223
               
               
               Cow position:chrX:30958824-30958979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:62-230
               
               
               Cow position:chrX:42314798-42314631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):143, 129

               
               
               Conread position:63-183
               
               
               Cow position:chrX:4366441-4366559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:63-187
               
               
               Cow position:chrX:30824084-30824203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:63-204
               
               
               Cow position:chrX:25037082-25037227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:63-204
               
               
               Cow position:chrX:31480063-31480201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):21, 27

               
               
               Conread position:63-205
               
               
               Cow position:chrX:31279829-31279690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):136, 59

               
               
               Conread position:63-215
               
               
               Cow position:chrX:41215417-41215570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:63-224
               
               
               Cow position:chrX:14135773-14135933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):149, 61

               
               
               Conread position:64-185
               
               
               Cow position:chrX:28836981-28837100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:64-192
               
               
               Cow position:chrX:42159037-42159165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:64-225
               
               
               Cow position:chrX:19000222-19000384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:65-199
               
               
               Cow position:chrX:35541108-35541247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:65-211
               
               
               Cow position:chrX:11859441-11859292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:65-214
               
               
               Cow position:chrX:41194002-41194153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:124
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):110, 21

               
               
               Conread position:65-220
               
               
               Cow position:chrX:36962847-36962999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):32, 40

               
               
               Conread position:65-223
               
               
               Cow position:chrX:4607176-4607016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:66-186
               
               
               Cow position:chrX:40583216-40583096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-189
               
               
               Cow position:chrX:13135452-13135333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:66-191
               
               
               Cow position:chrX:13347366-13347491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:66-217
               
               
               Cow position:chrX:15534114-15533964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 128

               
               
               Conread position:67-193
               
               
               Cow position:chrX:45759770-45759893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):85, 55

               
               
               Conread position:68-219
               
               
               Cow position:chrX:783544-783694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:74-186
               
               
               Cow position:chrX:48020026-48019914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:74-217
               
               
               Cow position:chrX:42220596-42220454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:80-223
               
               
               Cow position:chrX:44235152-44235297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:82-204
               
               
               Cow position:chrX:44259144-44259267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:85-201
               
               
               Cow position:chrX:19162014-19161898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-212
               
               
               Cow position:chrX:23185221-23185093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:85-220
               
               
               Cow position:chrX:38080264-38080399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:85-224
               
               
               Cow position:chrX:37976566-37976707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:87-201
               
               
               Cow position:chrX:28846768-28846662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:94
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:88-218
               
               
               Cow position:chrX:32590286-32590154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:88-233
               
               
               Cow position:chrX:18196118-18196264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:88-236
               
               
               Cow position:chrX:18444280-18444135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:89-204
               
               
               Cow position:chrX:44873227-44873112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:89-219
               
               
               Cow position:chrX:23882899-23883028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:92-204
               
               
               Cow position:chrX:27226605-27226717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:99-199
               
               
               Cow position:chrX:11501025-11501126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:102
               
               
               Alignm identity:83
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:102-208
               
               
               Cow position:chrX:1464780-1464674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:107
               
               
               Alignm identity:90
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:104-222
               
               
               Cow position:chrX:3130778-3130895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:107-222
               
               
               Cow position:chrX:26850287-26850174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:112-224
               
               
               Cow position:chrX:22134878-22134768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:115-204
               
               
               Cow position:chrX:15545505-15545417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:90
               
               
               Alignm identity:78
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0