Non-Coding RNA Search

Cow genome map


           Conread name:
           rsto203_d13.y1
        

               Conread position:
               3-213
               

               Cow position:
               chr1:10778248-10778469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               172
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               56, 100
               

               Conread position:
               3-214
               

               Cow position:
               chr1:89349657-89349866 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               167
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               163, 23
               

               Conread position:
               3-215
               

               Cow position:
               chr1:31414290-31414056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               64, 106
               

               Conread position:
               3-215
               

               Cow position:
               chr1:56225153-56225371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               176
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               164, 59
               

               Conread position:
               4-213
               

               Cow position:
               chr1:53458382-53458599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               111, 29
               

               Conread position:
               19-215
               

               Cow position:
               chr1:72069136-72068934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               37-215
               

               Cow position:
               chr1:77099831-77099644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               38-214
               

               Cow position:
               chr1:24528887-24528704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               119, 30
               

               Conread position:
               64-186
               

               Cow position:
               chr1:4032370-4032491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               95
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               68-213
               

               Cow position:
               chr1:57264246-57264093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               96, 34
               

               Conread position:
               77-214
               

               Cow position:
               chr1:5023991-5023852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               23, 0
               

               Conread position:
               78-215
               

               Cow position:
               chr1:89729207-89729069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               109
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               13, 29
               

               Conread position:
               3-212
               

               Cow position:
               chr10:54469738-54469522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               169
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               158, 99
               

               Conread position:
               3-213
               

               Cow position:
               chr10:24756078-24756289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               63, 120
               

               Conread position:
               3-215
               

               Cow position:
               chr10:2613025-2613241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               164
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               3-215
               

               Cow position:
               chr10:5264345-5264573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               183
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               155, 99
               

               Conread position:
               3-215
               

               Cow position:
               chr10:28395639-28395425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               164, 13
               

               Conread position:
               3-215
               

               Cow position:
               chr10:32774760-32774983 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               103, 28
               

               Conread position:
               3-215
               

               Cow position:
               chr10:46172324-46172116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               97, 32
               

               Conread position:
               10-211
               

               Cow position:
               chr10:12936556-12936762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               67, 77
               

               Conread position:
               10-215
               

               Cow position:
               chr10:28776020-28776225 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               25, 87
               

               Conread position:
               10-215
               

               Cow position:
               chr10:28835885-28836097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               147, 52
               

               Conread position:
               10-215
               

               Cow position:
               chr10:30746054-30746275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               64, 54
               

               Conread position:
               10-215
               

               Cow position:
               chr10:49146186-49146395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               162, 51
               

               Conread position:
               10-217
               

               Cow position:
               chr10:6242787-6242569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               149, 64
               

               Conread position:
               28-215
               

               Cow position:
               chr10:28105392-28105208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               146
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               136, 39
               

               Conread position:
               68-215
               

               Cow position:
               chr10:38014082-38014240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               159
               

               Alignm identity:
               123
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               68-215
               

               Cow position:
               chr10:55600476-55600328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               70-215
               

               Cow position:
               chr10:21082107-21082259 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               118
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               98, 36
               

               Conread position:
               71-215
               

               Cow position:
               chr10:15872150-15871997 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               120
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               95, 31
               

               Conread position:
               3-215
               

               Cow position:
               chr11:22103412-22103637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               118, 99
               

               Conread position:
               8-215
               

               Cow position:
               chr11:53552919-53553117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               157, 18
               

               Conread position:
               10-205
               

               Cow position:
               chr11:19890541-19890741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               68, 29
               

               Conread position:
               14-215
               

               Cow position:
               chr11:39499038-39499239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               166
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 8
               

               Conread position:
               14-221
               

               Cow position:
               chr11:41577344-41577128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               150, 88
               

               Conread position:
               16-215
               

               Cow position:
               chr11:59156212-59155998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               63, 90
               

               Conread position:
               67-215
               

               Cow position:
               chr11:6091935-6091778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               3-205
               

               Cow position:
               chr12:37514601-37514389 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               155
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               3-212
               

               Cow position:
               chr12:34673699-34673483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               169
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               158, 99
               

               Conread position:
               3-214
               

               Cow position:
               chr12:6489343-6489125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               152, 64
               

               Conread position:
               3-215
               

               Cow position:
               chr12:7919696-7919908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               15, 100
               

               Conread position:
               3-215
               

               Cow position:
               chr12:11835877-11836093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               157
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               169, 61
               

               Conread position:
               3-215
               

               Cow position:
               chr12:15121972-15122180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               171
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               169, 94
               

               Conread position:
               3-215
               

               Cow position:
               chr12:21486226-21486444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               156, 75
               

               Conread position:
               3-215
               

               Cow position:
               chr12:31429926-31429710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               169, 82
               

               Conread position:
               10-200
               

               Cow position:
               chr12:3039152-3039345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               195
               

               Alignm identity:
               151
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               162, 34
               

               Conread position:
               10-215
               

               Cow position:
               chr12:7885015-7884810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               144, 45
               

               Conread position:
               10-215
               

               Cow position:
               chr12:17031243-17031475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               57, 21
               

               Conread position:
               10-215
               

               Cow position:
               chr12:17881509-17881722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               120, 167
               

               Conread position:
               30-226
               

               Cow position:
               chr12:4116162-4116363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               111, 72
               

               Conread position:
               2-215
               

               Cow position:
               chr13:47007421-47007643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               162, 60
               

               Conread position:
               3-209
               

               Cow position:
               chr13:20440284-20440496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               74, 109
               

               Conread position:
               3-211
               

               Cow position:
               chr13:21107447-21107229 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               66, 129
               

               Conread position:
               3-215
               

               Cow position:
               chr13:152260-152041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               39, 103
               

               Conread position:
               3-215
               

               Cow position:
               chr13:12875668-12875886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               170
               

               Alignm E-value:
               4.99997e-41
               

               Alignm gaps (pig, cow):
               155, 168
               

               Conread position:
               3-215
               

               Cow position:
               chr13:20820521-20820749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               57, 102
               

               Conread position:
               3-215
               

               Cow position:
               chr13:22085443-22085657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               157, 57
               

               Conread position:
               3-215
               

               Cow position:
               chr13:34375572-34375354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               135, 96
               

               Conread position:
               10-213
               

               Cow position:
               chr13:54864753-54864943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               143, 29
               

               Conread position:
               10-215
               

               Cow position:
               chr13:34263072-34263282 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               156, 17
               

               Conread position:
               10-215
               

               Cow position:
               chr13:47313213-47313006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               151, 95
               

               Conread position:
               11-213
               

               Cow position:
               chr13:13321089-13320873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               98, 131
               

               Conread position:
               19-215
               

               Cow position:
               chr13:11260547-11260355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               148
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               63, 32
               

               Conread position:
               20-215
               

               Cow position:
               chr13:25817813-25817609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               45-202
               

               Cow position:
               chr13:18244129-18243963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               113, 5
               

               Conread position:
               62-216
               

               Cow position:
               chr13:17970776-17970942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               5, 41
               

               Conread position:
               68-215
               

               Cow position:
               chr13:30693953-30693792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               123
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               3-216
               

               Cow position:
               chr14:33538554-33538780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               175
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               104, 85
               

               Conread position:
               10-215
               

               Cow position:
               chr14:8784543-8784326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               148, 92
               

               Conread position:
               11-214
               

               Cow position:
               chr14:8102143-8101934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               158, 57
               

               Conread position:
               19-206
               

               Cow position:
               chr14:21538123-21538318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               197
               

               Alignm identity:
               159
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               153, 83
               

               Conread position:
               28-213
               

               Cow position:
               chr14:41180366-41180552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               125, 139
               

               Conread position:
               67-213
               

               Cow position:
               chr14:33751822-33751668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               3-215
               

               Cow position:
               chr15:12259745-12259525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               155, 49
               

               Conread position:
               3-215
               

               Cow position:
               chr15:15707698-15707920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               61, 76
               

               Conread position:
               3-215
               

               Cow position:
               chr15:52197894-52198117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               155, 28
               

               Conread position:
               5-213
               

               Cow position:
               chr15:5722261-5722474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               10-213
               

               Cow position:
               chr15:17869880-17870093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr15:13683874-13684076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               153, 41
               

               Conread position:
               10-215
               

               Cow position:
               chr15:20370058-20370266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               152, 24
               

               Conread position:
               10-215
               

               Cow position:
               chr15:26078956-26079173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr15:30982328-30982115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               98, 64
               

               Conread position:
               10-215
               

               Cow position:
               chr15:39090676-39090461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               152
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               150, 114
               

               Conread position:
               13-215
               

               Cow position:
               chr15:34206788-34206998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               151, 18
               

               Conread position:
               3-214
               

               Cow position:
               chr16:32970400-32970181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               3-215
               

               Cow position:
               chr16:4857425-4857197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               68, 25
               

               Conread position:
               3-215
               

               Cow position:
               chr16:15824770-15824546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               160, 92
               

               Conread position:
               3-215
               

               Cow position:
               chr16:42092705-42092485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-32
               

               Alignm gaps (pig, cow):
               155, 55
               

               Conread position:
               3-215
               

               Cow position:
               chr16:49141890-49141666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               175
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               161, 0
               

               Conread position:
               10-213
               

               Cow position:
               chr16:18949295-18949497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               97, 133
               

               Conread position:
               10-214
               

               Cow position:
               chr16:48398568-48398354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               156, 58
               

               Conread position:
               10-215
               

               Cow position:
               chr16:7504775-7504986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               165
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               156, 91
               

               Conread position:
               10-215
               

               Cow position:
               chr16:19643570-19643787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               146, 130
               

               Conread position:
               68-215
               

               Cow position:
               chr16:53086591-53086431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               127
               

               Alignm E-value:
               9e-26
               

               Alignm gaps (pig, cow):
               96, 34
               

               Conread position:
               70-203
               

               Cow position:
               chr16:23033604-23033745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               142
               

               Alignm identity:
               114
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               3-205
               

               Cow position:
               chr17:2270477-2270685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               165, 0
               

               Conread position:
               3-215
               

               Cow position:
               chr17:11216171-11215952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               154, 57
               

               Conread position:
               3-287
               

               Cow position:
               chr17:40802521-40802806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               216
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               154, 219
               

               Conread position:
               10-215
               

               Cow position:
               chr17:14003545-14003757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               131, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr17:32989209-32989421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               153, 98
               

               Conread position:
               10-215
               

               Cow position:
               chr17:33934030-33933809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               11-214
               

               Cow position:
               chr17:20269329-20269540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               8e-27
               

               Alignm gaps (pig, cow):
               107, 89
               

               Conread position:
               39-215
               

               Cow position:
               chr17:9079444-9079256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               135
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               47-216
               

               Cow position:
               chr17:18495754-18495580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               138
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               60, 31
               

               Conread position:
               49-215
               

               Cow position:
               chr17:11102039-11101861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               67-215
               

               Cow position:
               chr17:35126487-35126647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               3-215
               

               Cow position:
               chr18:19159327-19159105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               153, 22
               

               Conread position:
               3-215
               

               Cow position:
               chr18:29387867-29388085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-34
               

               Alignm gaps (pig, cow):
               163, 26
               

               Conread position:
               3-215
               

               Cow position:
               chr18:50082600-50082384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               104, 19
               

               Conread position:
               5-215
               

               Cow position:
               chr18:30360482-30360269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               164, 0
               

               Conread position:
               7-215
               

               Cow position:
               chr18:38606876-38607089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               11-215
               

               Cow position:
               chr18:13508082-13507873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               152, 49
               

               Conread position:
               40-215
               

               Cow position:
               chr18:6881664-6881482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               147
               

               Alignm E-value:
               9e-36
               

               Alignm gaps (pig, cow):
               101, 9
               

               Conread position:
               40-215
               

               Cow position:
               chr18:29958473-29958291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               120, 62
               

               Conread position:
               54-212
               

               Cow position:
               chr18:15025364-15025537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               75-215
               

               Cow position:
               chr18:15614136-15613994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               113
               

               Alignm E-value:
               6e-22
               

               Alignm gaps (pig, cow):
               90, 16
               

               Conread position:
               3-215
               

               Cow position:
               chr19:15068336-15068115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               171
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               163, 139
               

               Conread position:
               7-213
               

               Cow position:
               chr19:24358562-24358344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               150, 95
               

               Conread position:
               7-215
               

               Cow position:
               chr19:42777560-42777769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               10-209
               

               Cow position:
               chr19:19490272-19490068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               154, 50
               

               Conread position:
               10-215
               

               Cow position:
               chr19:7612293-7612508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               148, 52
               

               Conread position:
               10-215
               

               Cow position:
               chr19:8375637-8375418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               146, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr19:24061961-24062179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               23-213
               

               Cow position:
               chr19:35622041-35622244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               149
               

               Alignm E-value:
               7e-23
               

               Alignm gaps (pig, cow):
               57, 27
               

               Conread position:
               40-215
               

               Cow position:
               chr19:13129588-13129760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               119, 27
               

               Conread position:
               55-202
               

               Cow position:
               chr19:18015995-18015845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               119
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               105, 9
               

               Conread position:
               79-214
               

               Cow position:
               chr19:35076754-35076610 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               2-213
               

               Cow position:
               chr2:39385194-39384974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               178
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               154, 55
               

               Conread position:
               2-215
               

               Cow position:
               chr2:46357516-46357739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               156, 58
               

               Conread position:
               3-202
               

               Cow position:
               chr2:21415983-21416192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               161, 75
               

               Conread position:
               3-207
               

               Cow position:
               chr2:32432062-32431836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               160
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               3-209
               

               Cow position:
               chr2:52409603-52409384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               73, 0
               

               Conread position:
               3-214
               

               Cow position:
               chr2:15298210-15298434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               177
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               103, 0
               

               Conread position:
               3-214
               

               Cow position:
               chr2:29268733-29268957 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               153, 90
               

               Conread position:
               3-215
               

               Cow position:
               chr2:549650-549429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               64, 89
               

               Conread position:
               3-215
               

               Cow position:
               chr2:14633857-14634072 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               167
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               170, 75
               

               Conread position:
               3-215
               

               Cow position:
               chr2:63288480-63288256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               146, 103
               

               Conread position:
               3-216
               

               Cow position:
               chr2:47877648-47877875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               177
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               161, 0
               

               Conread position:
               3-218
               

               Cow position:
               chr2:55877072-55877290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-37
               

               Alignm gaps (pig, cow):
               155, 57
               

               Conread position:
               10-215
               

               Cow position:
               chr2:16412054-16412270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-28
               

               Alignm gaps (pig, cow):
               148, 99
               

               Conread position:
               12-213
               

               Cow position:
               chr2:52344440-52344651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 90
               

               Conread position:
               13-215
               

               Cow position:
               chr2:31783623-31783836 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               54, 68
               

               Conread position:
               14-213
               

               Cow position:
               chr2:44032844-44032639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               142, 21
               

               Conread position:
               30-215
               

               Cow position:
               chr2:43609394-43609206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               146
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               138, 35
               

               Conread position:
               45-215
               

               Cow position:
               chr2:6951921-6952095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               68-215
               

               Cow position:
               chr2:45881033-45880879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               79-214
               

               Cow position:
               chr2:38747421-38747563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               144
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               87, 58
               

               Conread position:
               3-214
               

               Cow position:
               chr20:12334094-12334315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               163, 22
               

               Conread position:
               3-215
               

               Cow position:
               chr20:6096774-6096552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               3-215
               

               Cow position:
               chr20:24069526-24069745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-39
               

               Alignm gaps (pig, cow):
               160, 85
               

               Conread position:
               10-215
               

               Cow position:
               chr20:25162392-25162187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               149
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               61, 131
               

               Conread position:
               12-215
               

               Cow position:
               chr20:19459922-19459720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               66, 15
               

               Conread position:
               52-216
               

               Cow position:
               chr20:20312977-20312804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               67-213
               

               Cow position:
               chr20:35364827-35364985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               93, 29
               

               Conread position:
               10-202
               

               Cow position:
               chr21:48484701-48484503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               164
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               148, 57
               

               Conread position:
               10-215
               

               Cow position:
               chr21:643076-643290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               148, 81
               

               Conread position:
               10-215
               

               Cow position:
               chr21:2904723-2904511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               164
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr21:32574470-32574680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               66, 164
               

               Conread position:
               10-215
               

               Cow position:
               chr21:34391227-34391013 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               148, 17
               

               Conread position:
               10-215
               

               Cow position:
               chr21:38120842-38121063 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               10-216
               

               Cow position:
               chr21:2367079-2367297 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               10-221
               

               Cow position:
               chr21:44515004-44515231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               167
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               3-214
               

               Cow position:
               chr22:10294717-10294937 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               163, 59
               

               Conread position:
               3-215
               

               Cow position:
               chr22:41271325-41271104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               150, 85
               

               Conread position:
               10-215
               

               Cow position:
               chr22:1874394-1874588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr22:6721392-6721178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               148, 62
               

               Conread position:
               10-215
               

               Cow position:
               chr22:10568012-10567806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               162, 50
               

               Conread position:
               14-213
               

               Cow position:
               chr22:226760-226559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               127, 88
               

               Conread position:
               3-215
               

               Cow position:
               chr23:39049742-39049523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               158
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               103, 74
               

               Conread position:
               10-211
               

               Cow position:
               chr23:20001753-20001961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               154, 92
               

               Conread position:
               10-211
               

               Cow position:
               chr23:31493561-31493768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               154, 25
               

               Conread position:
               10-215
               

               Cow position:
               chr23:9235388-9235171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-36
               

               Alignm gaps (pig, cow):
               58, 94
               

               Conread position:
               10-215
               

               Cow position:
               chr23:39778093-39778306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               146, 58
               

               Conread position:
               67-215
               

               Cow position:
               chr23:16664816-16664666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               115
               

               Alignm E-value:
               6e-25
               

               Alignm gaps (pig, cow):
               89, 102
               

               Conread position:
               3-215
               

               Cow position:
               chr24:20923246-20923461 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               161, 57
               

               Conread position:
               10-214
               

               Cow position:
               chr24:30235529-30235746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr24:29180552-29180762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 92
               

               Conread position:
               24-215
               

               Cow position:
               chr24:27465900-27465703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               75, 27
               

               Conread position:
               34-215
               

               Cow position:
               chr24:18970813-18970633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               136, 36
               

               Conread position:
               52-213
               

               Cow position:
               chr24:31159319-31159489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               66-214
               

               Cow position:
               chr24:40974714-40974873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               119
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               2-215
               

               Cow position:
               chr25:11054595-11054801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               166
               

               Alignm E-value:
               7e-37
               

               Alignm gaps (pig, cow):
               164, 37
               

               Conread position:
               3-212
               

               Cow position:
               chr25:35076995-35076789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               151
               

               Alignm E-value:
               8e-28
               

               Alignm gaps (pig, cow):
               152, 133
               

               Conread position:
               3-213
               

               Cow position:
               chr25:2414503-2414713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               165, 57
               

               Conread position:
               7-215
               

               Cow position:
               chr25:4522147-4521938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               164
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               160, 93
               

               Conread position:
               10-215
               

               Cow position:
               chr25:14103970-14104181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-27
               

               Alignm gaps (pig, cow):
               147, 52
               

               Conread position:
               10-215
               

               Cow position:
               chr25:26523652-26523861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-38
               

               Alignm gaps (pig, cow):
               138, 161
               

               Conread position:
               3-202
               

               Cow position:
               chr26:13774184-13774385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               155, 92
               

               Conread position:
               3-213
               

               Cow position:
               chr26:6714598-6714380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               169
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               3-214
               

               Cow position:
               chr26:6030075-6029860 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               168
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               161, 59
               

               Conread position:
               3-215
               

               Cow position:
               chr26:18918392-18918160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               30, 106
               

               Conread position:
               10-214
               

               Cow position:
               chr26:11875479-11875262 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               173
               

               Alignm E-value:
               8e-39
               

               Alignm gaps (pig, cow):
               45, 88
               

               Conread position:
               10-215
               

               Cow position:
               chr26:9100059-9099845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               164
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               97, 66
               

               Conread position:
               10-215
               

               Cow position:
               chr26:12145411-12145204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               157, 64
               

               Conread position:
               25-215
               

               Cow position:
               chr26:18825566-18825366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               145
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               131, 101
               

               Conread position:
               3-200
               

               Cow position:
               chr27:15342844-15343035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               150
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               70, 54
               

               Conread position:
               10-213
               

               Cow position:
               chr27:16238177-16237965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               10-213
               

               Cow position:
               chr27:20629309-20629104 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               57, 79
               

               Conread position:
               14-215
               

               Cow position:
               chr27:1123295-1123089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               129, 46
               

               Conread position:
               67-215
               

               Cow position:
               chr27:20481176-20481319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               2-214
               

               Cow position:
               chr28:5805192-5805420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               63, 112
               

               Conread position:
               3-213
               

               Cow position:
               chr28:6971665-6971442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-38
               

               Alignm gaps (pig, cow):
               154, 99
               

               Conread position:
               3-215
               

               Cow position:
               chr28:4536145-4536360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               170
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               163, 25
               

               Conread position:
               3-215
               

               Cow position:
               chr28:8787224-8787443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               172
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               161, 112
               

               Conread position:
               3-215
               

               Cow position:
               chr28:16686708-16686934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               163
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               142, 68
               

               Conread position:
               4-215
               

               Cow position:
               chr28:34561033-34561254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               160, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr28:3740533-3740749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               158, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr28:10762355-10762563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               13, 79
               

               Conread position:
               10-215
               

               Cow position:
               chr28:22332231-22332439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               163
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               144, 68
               

               Conread position:
               10-215
               

               Cow position:
               chr28:30327403-30327187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               68, 106
               

               Conread position:
               40-215
               

               Cow position:
               chr28:23008017-23007830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-24
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               68-209
               

               Cow position:
               chr28:32747678-32747825 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               118
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               104, 74
               

               Conread position:
               70-216
               

               Cow position:
               chr28:19026262-19026107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               156
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               9-215
               

               Cow position:
               chr29:35291771-35291987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               172
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr29:6925696-6925909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               166
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               154, 85
               

               Conread position:
               10-215
               

               Cow position:
               chr29:10156615-10156408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               157
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               146, 92
               

               Conread position:
               19-215
               

               Cow position:
               chr29:4328117-4328321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 105
               

               Conread position:
               25-213
               

               Cow position:
               chr29:10456863-10456664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               156
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               132, 71
               

               Conread position:
               82-215
               

               Cow position:
               chr29:31594369-31594233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               111
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               2-215
               

               Cow position:
               chr3:37186485-37186705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               146, 56
               

               Conread position:
               3-213
               

               Cow position:
               chr3:55190100-55189883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-35
               

               Alignm gaps (pig, cow):
               149, 14
               

               Conread position:
               3-213
               

               Cow position:
               chr3:81371301-81371520 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 0
               

               Conread position:
               3-215
               

               Cow position:
               chr3:28908558-28908327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               3-215
               

               Cow position:
               chr3:54782366-54782142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               101, 64
               

               Conread position:
               3-215
               

               Cow position:
               chr3:75710958-75711186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               168
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               66, 105
               

               Conread position:
               7-215
               

               Cow position:
               chr3:22676430-22676216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               169
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               142, 53
               

               Conread position:
               10-215
               

               Cow position:
               chr3:16004332-16004115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               151, 35
               

               Conread position:
               10-215
               

               Cow position:
               chr3:31047290-31047076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               155
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr3:50069431-50069639 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               58, 74
               

               Conread position:
               18-213
               

               Cow position:
               chr3:59798914-59799120 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               24-214
               

               Cow position:
               chr3:75479683-75479876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               199
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               134, 36
               

               Conread position:
               2-215
               

               Cow position:
               chr4:19096955-19097180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               162, 56
               

               Conread position:
               2-215
               

               Cow position:
               chr4:37915670-37915447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               178
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               15, 96
               

               Conread position:
               3-215
               

               Cow position:
               chr4:3421307-3421518 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               106, 148
               

               Conread position:
               3-215
               

               Cow position:
               chr4:8947059-8947284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               3-215
               

               Cow position:
               chr4:23853866-23854087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               58, 28
               

               Conread position:
               3-215
               

               Cow position:
               chr4:46059080-46058861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               155
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               69, 174
               

               Conread position:
               11-213
               

               Cow position:
               chr4:33097290-33097087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               142, 51
               

               Conread position:
               12-215
               

               Cow position:
               chr4:22741722-22741521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               147
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               134, 107
               

               Conread position:
               13-215
               

               Cow position:
               chr4:31136424-31136642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               19-215
               

               Cow position:
               chr4:19561372-19561575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               139, 70
               

               Conread position:
               40-215
               

               Cow position:
               chr4:49424542-49424723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               113, 20
               

               Conread position:
               52-211
               

               Cow position:
               chr4:51727793-51727963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               75-212
               

               Cow position:
               chr4:34630635-34630782 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               115
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               87, 27
               

               Conread position:
               3-213
               

               Cow position:
               chr5:12672328-12672108 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               158, 79
               

               Conread position:
               3-213
               

               Cow position:
               chr5:34915835-34916061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               172
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               19, 100
               

               Conread position:
               3-215
               

               Cow position:
               chr5:7921688-7921476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               67, 145
               

               Conread position:
               3-215
               

               Cow position:
               chr5:50599760-50599980 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               154
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               113, 99
               

               Conread position:
               8-215
               

               Cow position:
               chr5:31145082-31144864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               70, 5
               

               Conread position:
               10-215
               

               Cow position:
               chr5:35762991-35763199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               149, 0
               

               Conread position:
               10-215
               

               Cow position:
               chr5:74643960-74643747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               146, 92
               

               Conread position:
               11-214
               

               Cow position:
               chr5:27015394-27015607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               158
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               127, 67
               

               Conread position:
               67-215
               

               Cow position:
               chr5:26477235-26477088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               69-215
               

               Cow position:
               chr5:25035467-25035319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               115
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               3-213
               

               Cow position:
               chr6:15305297-15305517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               155, 57
               

               Conread position:
               3-214
               

               Cow position:
               chr6:4864830-4864611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               75, 98
               

               Conread position:
               3-215
               

               Cow position:
               chr6:38233691-38233896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               39, 81
               

               Conread position:
               3-215
               

               Cow position:
               chr6:38771006-38771224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               168
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               73, 36
               

               Conread position:
               3-215
               

               Cow position:
               chr6:46570829-46571055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               171
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               154, 41
               

               Conread position:
               3-215
               

               Cow position:
               chr6:66532094-66531883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               160
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               49, 100
               

               Conread position:
               10-215
               

               Cow position:
               chr6:28476893-28477116 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               12-215
               

               Cow position:
               chr6:7131154-7130942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               167
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               54-213
               

               Cow position:
               chr6:40138946-40138776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               67-211
               

               Cow position:
               chr6:4383265-4383420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               119
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               91, 35
               

               Conread position:
               67-214
               

               Cow position:
               chr6:67950731-67950890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               160
               

               Alignm identity:
               121
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               2-213
               

               Cow position:
               chr7:68956399-68956611 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               81, 33
               

               Conread position:
               3-212
               

               Cow position:
               chr7:17950580-17950796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               165, 42
               

               Conread position:
               3-215
               

               Cow position:
               chr7:14542341-14542118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               151, 107
               

               Conread position:
               3-215
               

               Cow position:
               chr7:33633112-33632891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               173
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               161, 149
               

               Conread position:
               3-215
               

               Cow position:
               chr7:53034602-53034380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               224
               

               Alignm identity:
               173
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               161, 149
               

               Conread position:
               3-215
               

               Cow position:
               chr7:60483713-60483486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               42, 104
               

               Conread position:
               10-202
               

               Cow position:
               chr7:268713-268918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               148, 109
               

               Conread position:
               10-202
               

               Cow position:
               chr7:45157850-45158047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               152
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               149, 92
               

               Conread position:
               10-212
               

               Cow position:
               chr7:44596978-44596762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               58, 9
               

               Conread position:
               10-214
               

               Cow position:
               chr7:23477587-23477385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               145, 57
               

               Conread position:
               10-215
               

               Cow position:
               chr7:35275351-35275140 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               148, 50
               

               Conread position:
               10-215
               

               Cow position:
               chr7:48020146-48020361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               57, 99
               

               Conread position:
               10-215
               

               Cow position:
               chr7:53772590-53772390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               136, 19
               

               Conread position:
               55-214
               

               Cow position:
               chr7:34422499-34422329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               172
               

               Alignm identity:
               129
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               103, 47
               

               Conread position:
               57-210
               

               Cow position:
               chr7:39988173-39988338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               130
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               88, 84
               

               Conread position:
               67-215
               

               Cow position:
               chr7:17782898-17782738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               68-215
               

               Cow position:
               chr7:47046260-47046406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               120
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               98, 34
               

               Conread position:
               79-215
               

               Cow position:
               chr7:32221804-32221949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               110
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               87, 0
               

               Conread position:
               2-215
               

               Cow position:
               chr8:7610248-7610032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               164, 45
               

               Conread position:
               3-207
               

               Cow position:
               chr8:29026942-29026735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-40
               

               Alignm gaps (pig, cow):
               68, 131
               

               Conread position:
               3-214
               

               Cow position:
               chr8:39144449-39144658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               155, 75
               

               Conread position:
               3-215
               

               Cow position:
               chr8:13922109-13922337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               10-207
               

               Cow position:
               chr8:29947853-29947651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               159
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               138, 50
               

               Conread position:
               10-215
               

               Cow position:
               chr8:33974260-33974469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               166
               

               Alignm E-value:
               7.00649e-44
               

               Alignm gaps (pig, cow):
               143, 92
               

               Conread position:
               10-215
               

               Cow position:
               chr8:43478738-43478953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               67, 22
               

               Conread position:
               12-215
               

               Cow position:
               chr8:1187625-1187828 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               152
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               126, 19
               

               Conread position:
               12-215
               

               Cow position:
               chr8:59766298-59766509 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               50, 56
               

               Conread position:
               13-215
               

               Cow position:
               chr8:39845322-39845531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               94, 129
               

               Conread position:
               18-215
               

               Cow position:
               chr8:58519994-58520199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               55, 86
               

               Conread position:
               40-215
               

               Cow position:
               chr8:32855087-32854903 (view UCSC Genome Browser custom track)
               

               Alignm length:
               188
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               68-213
               

               Cow position:
               chr8:20073419-20073276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               13, 39
               

               Conread position:
               70-214
               

               Cow position:
               chr8:55884739-55884879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               114
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               37, 83
               

               Conread position:
               2-215
               

               Cow position:
               chr9:5246207-5245986 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               171
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               162, 58
               

               Conread position:
               2-215
               

               Cow position:
               chr9:41680095-41679876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               78, 58
               

               Conread position:
               3-202
               

               Cow position:
               chr9:13186367-13186569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               153
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               161, 32
               

               Conread position:
               12-212
               

               Cow position:
               chr9:34666760-34666552 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               140, 90
               

               Conread position:
               13-214
               

               Cow position:
               chr9:4267642-4267852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               123, 81
               

               Conread position:
               18-215
               

               Cow position:
               chr9:5501193-5500988 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               127, 12
               

               Conread position:
               22-214
               

               Cow position:
               chr9:3924960-3924752 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               148
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               73-215
               

               Cow position:
               chr9:34689321-34689471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               116
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               76-214
               

               Cow position:
               chr9:3070135-3070289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               155
               

               Alignm identity:
               121
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               3-215
               

               Cow position:
               chrX:5118788-5118577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               167
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               37, 58
               

               Conread position:
               3-215
               

               Cow position:
               chrX:12437541-12437327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               165, 57
               

               Conread position:
               3-215
               

               Cow position:
               chrX:17497791-17498010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 0
               

               Conread position:
               3-215
               

               Cow position:
               chrX:31436175-31436403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               177
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               104, 0
               

               Conread position:
               3-216
               

               Cow position:
               chrX:30162692-30162922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               157, 99
               

               Conread position:
               7-213
               

               Cow position:
               chrX:34532230-34532444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               164
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               157, 88
               

               Conread position:
               10-213
               

               Cow position:
               chrX:34192383-34192596 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               151, 32
               

               Conread position:
               10-215
               

               Cow position:
               chrX:7695466-7695674 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               174
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               158, 9
               

               Conread position:
               10-215
               

               Cow position:
               chrX:19015144-19015363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               172
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               147, 0
               

               Conread position:
               10-216
               

               Cow position:
               chrX:28866287-28866073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               143, 53
               

               Conread position:
               20-209
               

               Cow position:
               chrX:31294828-31294638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               151
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               144, 50
               

               Conread position:
               67-213
               

               Cow position:
               chrX:43567698-43567845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               115
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               113, 0
Conread position:	3-213
Cow position:	chr1:10778248-10778469 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	172
Alignm E-value:	8e-40
Alignm gaps (pig, cow):	56, 100
Conread position:	3-214
Cow position:	chr1:89349657-89349866 (view UCSC Genome Browser custom track)
Alignm length:	215
Alignm identity:	167
Alignm E-value:	3.00018e-42
Alignm gaps (pig, cow):	163, 23
Conread position:	3-215
Cow position:	chr1:31414290-31414056 (view UCSC Genome Browser custom track)
Alignm length:	236
Alignm identity:	168
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	64, 106
Conread position:	4-213
Cow position:	chr1:53458382-53458599 (view UCSC Genome Browser custom track)
Alignm length:	219
Alignm identity:	164
Alignm E-value:	2e-35
Alignm gaps (pig, cow):	111, 29
Conread position:	19-215
Cow position:	chr1:72069136-72068934 (view UCSC Genome Browser custom track)
Alignm length:	203
Alignm identity:	152
Alignm E-value:	1e-33
Alignm gaps (pig, cow):	137, 0
Conread position:	37-215
Cow position:	chr1:77099831-77099644 (view UCSC Genome Browser custom track)
Alignm length:	188
Alignm identity:	144
Alignm E-value:	3e-32
Alignm gaps (pig, cow):	74, 0
Conread position:	38-214
Cow position:	chr1:24528887-24528704 (view UCSC Genome Browser custom track)
Alignm length:	186
Alignm identity:	139
Alignm E-value:	7e-28
Alignm gaps (pig, cow):	119, 30
Conread position:	64-186
Cow position:	chr1:4032370-4032491 (view UCSC Genome Browser custom track)
Alignm length:	123
Alignm identity:	95
Alignm E-value:	1e-21
Alignm gaps (pig, cow):	113, 0
Conread position:	68-213
Cow position:	chr1:57264246-57264093 (view UCSC Genome Browser custom track)
Alignm length:	155
Alignm identity:	118
Alignm E-value:	4e-23
Alignm gaps (pig, cow):	96, 34
Conread position:	77-214
Cow position:	chr1:5023991-5023852 (view UCSC Genome Browser custom track)
Alignm length:	140
Alignm identity:	109
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	23, 0
Conread position:	78-215
Cow position:	chr1:89729207-89729069 (view UCSC Genome Browser custom track)
Alignm length:	140
Alignm identity:	109
Alignm E-value:	5e-25
Alignm gaps (pig, cow):	13, 29
Conread position:	3-212
Cow position:	chr10:54469738-54469522 (view UCSC Genome Browser custom track)
Alignm length:	218
Alignm identity:	169
Alignm E-value:	6.99949e-42
Alignm gaps (pig, cow):	158, 99
Conread position:	10-211
Cow position:	chr10:12936556-12936762 (view UCSC Genome Browser custom track)
Alignm length:	209
Alignm identity:	151
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	67, 77
Conread position:	10-215
Cow position:	chr10:28776020-28776225 (view UCSC Genome Browser custom track)
Alignm length:	211
Alignm identity:	162
Alignm E-value:	1e-37
Alignm gaps (pig, cow):	25, 87
Conread position:	10-217
Cow position:	chr10:6242787-6242569 (view UCSC Genome Browser custom track)
Alignm length:	225
Alignm identity:	169
Alignm E-value:	2e-29
Alignm gaps (pig, cow):	149, 64
Conread position:	28-215
Cow position:	chr10:28105392-28105208 (view UCSC Genome Browser custom track)
Alignm length:	196
Alignm identity:	146
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	136, 39
Conread position:	68-215
Cow position:	chr10:38014082-38014240 (view UCSC Genome Browser custom track)
Alignm length:	159
Alignm identity:	123
Alignm E-value:	1e-25
Alignm gaps (pig, cow):	96, 0
Conread position:	70-215
Cow position:	chr10:21082107-21082259 (view UCSC Genome Browser custom track)
Alignm length:	155
Alignm identity:	118
Alignm E-value:	7e-22
Alignm gaps (pig, cow):	98, 36
Conread position:	71-215
Cow position:	chr10:15872150-15871997 (view UCSC Genome Browser custom track)
Alignm length:	155
Alignm identity:	120
Alignm E-value:	9e-24
Alignm gaps (pig, cow):	95, 31
Conread position:	8-215
Cow position:	chr11:53552919-53553117 (view UCSC Genome Browser custom track)
Alignm length:	212
Alignm identity:	164
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	157, 18