• Home
• Research
• Resources
• Publications
• About
• People
• Events
• Jobs
• News
• Contact

Cow genome map

           
Conread name:
           
rsug05_n17.y1
        

               
Conread position:
               
1-174
               

               
Cow position:
               
chr1:31795003-31794832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr1:49334390-49334215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 133
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr1:57089677-57089504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 82
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr1:71078958-71078764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
15, 107
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:87197822-87198022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
15, 126
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr1:89381277-89381478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
14, 126
               

               
Conread position:
               
1-207
               

               
Cow position:
               
chr1:6790777-6790988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
179, 56
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr1:74084186-74083983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:6731182-6731397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
30, 123
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr1:36688376-36688162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
15, 94
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr1:5751315-5751536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
25, 145
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr1:32014200-32014403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
1-215
               

               
Cow position:
               
chr1:65318577-65318789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 99
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:484465-484244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
27, 174
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:72034922-72034703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
31, 111
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:84104059-84103836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr1:95152873-95153095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 213
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr1:90267723-90267956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
13, 176
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr1:38706852-38706598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
30, 111
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr1:97231962-97232229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
31, 212
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr1:61741964-61741748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
2-248
               

               
Cow position:
               
chr1:96019233-96019486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
164, 0
               

               
Conread position:
               
3-202
               

               
Cow position:
               
chr1:3965840-3966039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
177, 29
               

               
Conread position:
               
7-174
               

               
Cow position:
               
chr1:60044996-60045161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
8-166
               

               
Cow position:
               
chr1:76613124-76612966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
94, 90
               

               
Conread position:
               
8-174
               

               
Cow position:
               
chr1:96558838-96558672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
8-206
               

               
Cow position:
               
chr1:81638559-81638745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr1:19515608-19515410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
109, 151
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr1:22823916-22824119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
124, 168
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr1:72422397-72422196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr1:87095203-87095000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
186, 167
               

               
Conread position:
               
8-220
               

               
Cow position:
               
chr1:50432473-50432252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
8-222
               

               
Cow position:
               
chr1:55428946-55428726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
8-231
               

               
Cow position:
               
chr1:85818262-85818481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
168, 123
               

               
Conread position:
               
8-249
               

               
Cow position:
               
chr1:48581140-48581372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
10-166
               

               
Cow position:
               
chr1:65030080-65030236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
10-172
               

               
Cow position:
               
chr1:40181612-40181449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
13-159
               

               
Cow position:
               
chr1:874670-874816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-174
               

               
Cow position:
               
chr1:49082759-49082920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-208
               

               
Cow position:
               
chr1:40303567-40303753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
13-213
               

               
Cow position:
               
chr1:73020646-73020441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
13-225
               

               
Cow position:
               
chr1:84594904-84595116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-243
               

               
Cow position:
               
chr1:38419039-38419269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
112, 216
               

               
Conread position:
               
14-174
               

               
Cow position:
               
chr1:54258584-54258743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
14-213
               

               
Cow position:
               
chr1:81481365-81481173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
188, 108
               

               
Conread position:
               
14-220
               

               
Cow position:
               
chr1:93590569-93590361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
162, 111
               

               
Conread position:
               
14-222
               

               
Cow position:
               
chr1:61005545-61005339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 40
               

               
Conread position:
               
14-228
               

               
Cow position:
               
chr1:45315619-45315406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
111, 163
               

               
Conread position:
               
21-160
               

               
Cow position:
               
chr1:31630263-31630123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
21-173
               

               
Cow position:
               
chr1:61134436-61134588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
21-174
               

               
Cow position:
               
chr1:23633906-23633753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
21-197
               

               
Cow position:
               
chr1:63460902-63461083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
145, 97
               

               
Conread position:
               
21-210
               

               
Cow position:
               
chr1:55230000-55230191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
145, 104
               

               
Conread position:
               
21-213
               

               
Cow position:
               
chr1:48301427-48301229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
146, 110
               

               
Conread position:
               
21-214
               

               
Cow position:
               
chr1:5010812-5010611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
21-222
               

               
Cow position:
               
chr1:53402805-53403008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
159, 181
               

               
Conread position:
               
22-208
               

               
Cow position:
               
chr1:42175752-42175945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 70
               

               
Conread position:
               
23-210
               

               
Cow position:
               
chr1:5284206-5284008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
23-212
               

               
Cow position:
               
chr1:627992-628182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
157, 87
               

               
Conread position:
               
23-227
               

               
Cow position:
               
chr1:872089-871880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
24-213
               

               
Cow position:
               
chr1:52384935-52385133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
34-221
               

               
Cow position:
               
chr1:41953965-41953780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
171, 134
               

               
Conread position:
               
36-207
               

               
Cow position:
               
chr1:77685942-77685763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
37-174
               

               
Cow position:
               
chr1:23372899-23373035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
37-178
               

               
Cow position:
               
chr1:38277988-38277848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
37-201
               

               
Cow position:
               
chr1:1802207-1802374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
37-208
               

               
Cow position:
               
chr1:94823352-94823184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
37-210
               

               
Cow position:
               
chr1:43352616-43352446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
37-212
               

               
Cow position:
               
chr1:53370123-53370305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
144, 0
               

               
Conread position:
               
37-217
               

               
Cow position:
               
chr1:70422344-70422527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
37-221
               

               
Cow position:
               
chr1:76518462-76518642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
181, 139
               

               
Conread position:
               
37-222
               

               
Cow position:
               
chr1:9637069-9637252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
37-224
               

               
Cow position:
               
chr1:3666991-3666801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
37-234
               

               
Cow position:
               
chr1:731933-731740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
89, 142
               

               
Conread position:
               
38-159
               

               
Cow position:
               
chr1:72813657-72813778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
38-166
               

               
Cow position:
               
chr1:34856587-34856459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
38-166
               

               
Cow position:
               
chr1:47886439-47886314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
38-174
               

               
Cow position:
               
chr1:79170112-79169976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
38-174
               

               
Cow position:
               
chr1:95835757-95835621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
38-208
               

               
Cow position:
               
chr1:100852750-100852919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
142, 84
               

               
Conread position:
               
38-209
               

               
Cow position:
               
chr1:98557078-98556912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
61, 69
               

               
Conread position:
               
38-210
               

               
Cow position:
               
chr1:72068794-72068616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr1:70483293-70483121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
171, 87
               

               
Conread position:
               
38-215
               

               
Cow position:
               
chr1:1380038-1380216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
38-215
               

               
Cow position:
               
chr1:71664856-71664682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
38-215
               

               
Cow position:
               
chr1:79178669-79178846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
38-228
               

               
Cow position:
               
chr1:75250151-75250349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
39-197
               

               
Cow position:
               
chr1:88926340-88926182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
39-205
               

               
Cow position:
               
chr1:85622571-85622745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
39-208
               

               
Cow position:
               
chr1:86113358-86113185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
39-209
               

               
Cow position:
               
chr1:72092581-72092417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
39-215
               

               
Cow position:
               
chr1:12222565-12222381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
39-215
               

               
Cow position:
               
chr1:74929669-74929496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
39-224
               

               
Cow position:
               
chr1:34731086-34731270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
39-225
               

               
Cow position:
               
chr1:73545869-73545678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
140, 179
               

               
Conread position:
               
39-242
               

               
Cow position:
               
chr1:35671581-35671777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
141, 92
               

               
Conread position:
               
39-243
               

               
Cow position:
               
chr1:21955331-21955133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
39-256
               

               
Cow position:
               
chr1:49024331-49024548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
56, 161
               

               
Conread position:
               
43-199
               

               
Cow position:
               
chr1:98467845-98467998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
118, 6
               

               
Conread position:
               
43-207
               

               
Cow position:
               
chr1:79718853-79719023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
59, 25
               

               
Conread position:
               
44-158
               

               
Cow position:
               
chr1:67539606-67539720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-158
               

               
Cow position:
               
chr1:100823084-100823198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-160
               

               
Cow position:
               
chr1:81364307-81364423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-173
               

               
Cow position:
               
chr1:26984056-26984185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-174
               

               
Cow position:
               
chr1:19599314-19599186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
44-178
               

               
Cow position:
               
chr1:90879689-90879562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
44-178
               

               
Cow position:
               
chr1:98380250-98380117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
44-204
               

               
Cow position:
               
chr1:18764574-18764413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
136, 43
               

               
Conread position:
               
44-208
               

               
Cow position:
               
chr1:100512942-100513113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 49
               

               
Conread position:
               
44-209
               

               
Cow position:
               
chr1:102797951-102797782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
44-210
               

               
Cow position:
               
chr1:36018736-36018566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
44-213
               

               
Cow position:
               
chr1:100474281-100474449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 58
               

               
Conread position:
               
44-215
               

               
Cow position:
               
chr1:30028185-30028019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
161, 73
               

               
Conread position:
               
44-219
               

               
Cow position:
               
chr1:31607842-31607663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
44-220
               

               
Cow position:
               
chr1:20871512-20871339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr1:42796924-42797101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
44-224
               

               
Cow position:
               
chr1:1496485-1496308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
67, 133
               

               
Conread position:
               
44-241
               

               
Cow position:
               
chr1:99637207-99637013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
45-158
               

               
Cow position:
               
chr1:69411649-69411536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-166
               

               
Cow position:
               
chr1:70146863-70146742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-174
               

               
Cow position:
               
chr1:49433216-49433087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-175
               

               
Cow position:
               
chr1:11489111-11488981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-209
               

               
Cow position:
               
chr1:47658393-47658565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
45-223
               

               
Cow position:
               
chr1:64804054-64803863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
46-216
               

               
Cow position:
               
chr1:81515282-81515464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
46-222
               

               
Cow position:
               
chr1:102768226-102768395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
158, 76
               

               
Conread position:
               
46-228
               

               
Cow position:
               
chr1:33720150-33720330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
159, 129
               

               
Conread position:
               
47-221
               

               
Cow position:
               
chr1:4294394-4294565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
48-214
               

               
Cow position:
               
chr1:60403817-60403992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
48-222
               

               
Cow position:
               
chr1:7748264-7748444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
89, 159
               

               
Conread position:
               
48-222
               

               
Cow position:
               
chr1:7752430-7752608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
118, 157
               

               
Conread position:
               
51-207
               

               
Cow position:
               
chr1:90192470-90192636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
51-210
               

               
Cow position:
               
chr1:95994216-95994051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
51-213
               

               
Cow position:
               
chr1:81611373-81611537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
26, 79
               

               
Conread position:
               
53-256
               

               
Cow position:
               
chr1:62469116-62469310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
171, 65
               

               
Conread position:
               
54-174
               

               
Cow position:
               
chr1:73398017-73397897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
56-211
               

               
Cow position:
               
chr1:83246484-83246647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
61-173
               

               
Cow position:
               
chr1:64705963-64706075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
204-475
               

               
Cow position:
               
chr1:56489854-56490130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
145, 40
               

               
Conread position:
               
218-475
               

               
Cow position:
               
chr1:40684663-40684401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
120, 26
               

               
Conread position:
               
1-178
               

               
Cow position:
               
chr10:5151319-5151500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
15, 58
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr10:11463692-11463472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr10:48316974-48316767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
32, 172
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr10:45379032-45378817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
31, 128
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr10:34646474-34646266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr10:6489844-6490067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 179
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr10:10027547-10027763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
116, 30
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr10:49846747-49846976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr10:66365267-66365504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr10:23379106-23379338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
2-215
               

               
Cow position:
               
chr10:61509970-61509766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
14, 112
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr10:51727445-51727286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
3-173
               

               
Cow position:
               
chr10:54776520-54776692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
5-214
               

               
Cow position:
               
chr10:28843335-28843541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
7-214
               

               
Cow position:
               
chr10:10152990-10153186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chr10:6718954-6719166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
8-144
               

               
Cow position:
               
chr10:39140301-39140436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
8-173
               

               
Cow position:
               
chr10:42745899-42746055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
8-174
               

               
Cow position:
               
chr10:41132246-41132406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
8-209
               

               
Cow position:
               
chr10:16830405-16830197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
172, 110
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr10:16986313-16986512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
158, 165
               

               
Conread position:
               
8-210
               

               
Cow position:
               
chr10:48377416-48377212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
172, 41
               

               
Conread position:
               
13-207
               

               
Cow position:
               
chr10:33195028-33195219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
13-221
               

               
Cow position:
               
chr10:15868238-15868446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-222
               

               
Cow position:
               
chr10:16598675-16598884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
191, 97
               

               
Conread position:
               
13-222
               

               
Cow position:
               
chr10:16645200-16644995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
14-174
               

               
Cow position:
               
chr10:49923386-49923222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
14-213
               

               
Cow position:
               
chr10:14188623-14188424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
162, 68
               

               
Conread position:
               
14-217
               

               
Cow position:
               
chr10:46327678-46327874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
14-220
               

               
Cow position:
               
chr10:46042981-46043187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
171, 59
               

               
Conread position:
               
16-173
               

               
Cow position:
               
chr10:9576059-9575906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
21-177
               

               
Cow position:
               
chr10:46934787-46934631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
21-209
               

               
Cow position:
               
chr10:23127992-23127805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
113, 132
               

               
Conread position:
               
21-209
               

               
Cow position:
               
chr10:36856137-36855940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
21-210
               

               
Cow position:
               
chr10:19503289-19503092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
79, 119
               

               
Conread position:
               
21-222
               

               
Cow position:
               
chr10:47159209-47159406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
145, 98
               

               
Conread position:
               
22-168
               

               
Cow position:
               
chr10:37014629-37014775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
24-222
               

               
Cow position:
               
chr10:4330000-4329803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
106, 94
               

               
Conread position:
               
28-213
               

               
Cow position:
               
chr10:15602180-15601987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
34-220
               

               
Cow position:
               
chr10:35486431-35486245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
130, 140
               

               
Conread position:
               
37-160
               

               
Cow position:
               
chr10:13197821-13197694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 61
               

               
Conread position:
               
37-166
               

               
Cow position:
               
chr10:61982396-61982526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
37-174
               

               
Cow position:
               
chr10:55122817-55122953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
37-206
               

               
Cow position:
               
chr10:58149159-58148991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
143, 85
               

               
Conread position:
               
37-212
               

               
Cow position:
               
chr10:37971779-37971953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
129, 82
               

               
Conread position:
               
37-214
               

               
Cow position:
               
chr10:7309442-7309262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
37-230
               

               
Cow position:
               
chr10:43487724-43487915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
37-245
               

               
Cow position:
               
chr10:8870825-8871039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
139, 168
               

               
Conread position:
               
38-170
               

               
Cow position:
               
chr10:54848789-54848917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 57
               

               
Conread position:
               
38-203
               

               
Cow position:
               
chr10:31803470-31803308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
142, 71
               

               
Conread position:
               
38-207
               

               
Cow position:
               
chr10:37295661-37295501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr10:9959227-9959398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr10:55382326-55382507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
128, 107
               

               
Conread position:
               
38-214
               

               
Cow position:
               
chr10:9797899-9797720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
128, 80
               

               
Conread position:
               
38-221
               

               
Cow position:
               
chr10:53766353-53766534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
177, 137
               

               
Conread position:
               
38-222
               

               
Cow position:
               
chr10:4184207-4184399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
38-222
               

               
Cow position:
               
chr10:38995240-38995424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
14, 97
               

               
Conread position:
               
39-180
               

               
Cow position:
               
chr10:36401073-36400933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
39-203
               

               
Cow position:
               
chr10:34603632-34603463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
39-208
               

               
Cow position:
               
chr10:22593934-22594100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
39-210
               

               
Cow position:
               
chr10:69934768-69934595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
133, 83
               

               
Conread position:
               
39-211
               

               
Cow position:
               
chr10:15249030-15248850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
39-213
               

               
Cow position:
               
chr10:51873471-51873290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
39-214
               

               
Cow position:
               
chr10:15817781-15817605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
137, 27
               

               
Conread position:
               
39-215
               

               
Cow position:
               
chr10:27178505-27178673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
39-221
               

               
Cow position:
               
chr10:58414560-58414369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
40-214
               

               
Cow position:
               
chr10:8161517-8161697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
65, 47
               

               
Conread position:
               
43-210
               

               
Cow position:
               
chr10:19709394-19709572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
43-212
               

               
Cow position:
               
chr10:28571415-28571582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
162, 132
               

               
Conread position:
               
44-174
               

               
Cow position:
               
chr10:47182551-47182422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
44-205
               

               
Cow position:
               
chr10:15383344-15383508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
44-217
               

               
Cow position:
               
chr10:45871532-45871710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
44-219
               

               
Cow position:
               
chr10:34705294-34705476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
44-221
               

               
Cow position:
               
chr10:52881601-52881425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
101, 156
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr10:28223231-28223405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr10:40998874-40999048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
18, 82
               

               
Conread position:
               
44-225
               

               
Cow position:
               
chr10:61588243-61588065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
118, 126
               

               
Conread position:
               
45-210
               

               
Cow position:
               
chr10:22972987-22972827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
45-213
               

               
Cow position:
               
chr10:40933776-40933954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
45-222
               

               
Cow position:
               
chr10:52152813-52152987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
119, 112
               

               
Conread position:
               
46-166
               

               
Cow position:
               
chr10:42123573-42123453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
46-216
               

               
Cow position:
               
chr10:47670585-47670751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
149, 130
               

               
Conread position:
               
46-227
               

               
Cow position:
               
chr10:45476203-45476021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
46-235
               

               
Cow position:
               
chr10:44730459-44730260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 163
               

               
Conread position:
               
46-247
               

               
Cow position:
               
chr10:48814408-48814200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
128, 65
               

               
Conread position:
               
46-466
               

               
Cow position:
               
chr10:7304585-7305012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
47-209
               

               
Cow position:
               
chr10:38799858-38800027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
47-213
               

               
Cow position:
               
chr10:22390617-22390776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
47-237
               

               
Cow position:
               
chr10:45371076-45371260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
48-207
               

               
Cow position:
               
chr10:6964396-6964229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
48-211
               

               
Cow position:
               
chr10:62454348-62454182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
132, 121
               

               
Conread position:
               
48-212
               

               
Cow position:
               
chr10:41626616-41626782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
118, 23
               

               
Conread position:
               
51-202
               

               
Cow position:
               
chr10:282230-282378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
51-213
               

               
Cow position:
               
chr10:13350185-13350016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
51-221
               

               
Cow position:
               
chr10:65681687-65681510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
129, 156
               

               
Conread position:
               
51-248
               

               
Cow position:
               
chr10:16417575-16417384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
115, 68
               

               
Conread position:
               
52-209
               

               
Cow position:
               
chr10:50332620-50332780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
122, 45
               

               
Conread position:
               
54-206
               

               
Cow position:
               
chr10:5108828-5108668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
57-222
               

               
Cow position:
               
chr10:7291780-7291615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
191-469
               

               
Cow position:
               
chr10:25565233-25564950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
155, 21
               

               
Conread position:
               
193-474
               

               
Cow position:
               
chr10:55024228-55024500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
54, 41
               

               
Conread position:
               
200-472
               

               
Cow position:
               
chr10:51952586-51952311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
24, 45
               

               
Conread position:
               
1-148
               

               
Cow position:
               
chr11:76835646-76835497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr11:35926926-35926777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-171
               

               
Cow position:
               
chr11:13592714-13592889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr11:35109559-35109385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 86
               

               
Conread position:
               
1-209
               

               
Cow position:
               
chr11:6233901-6233694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 175
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr11:19592014-19591800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr11:30830635-30830420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 100
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr11:45742356-45742567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
165, 30
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr11:13499996-13500211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
166, 110
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr11:45350533-45350309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr11:69168564-69168809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 214
               

               
Conread position:
               
2-166
               

               
Cow position:
               
chr11:3714805-3714966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
3-213
               

               
Cow position:
               
chr11:67614941-67614737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
4-214
               

               
Cow position:
               
chr11:42016657-42016439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
7-174
               

               
Cow position:
               
chr11:84385652-84385485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
7-208
               

               
Cow position:
               
chr11:30708491-30708688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
25, 67
               

               
Conread position:
               
7-213
               

               
Cow position:
               
chr11:35723955-35724163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
189, 0
               

               
Conread position:
               
8-166
               

               
Cow position:
               
chr11:63435509-63435666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
8-209
               

               
Cow position:
               
chr11:26144108-26143904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
168, 0
               

               
Conread position:
               
8-209
               

               
Cow position:
               
chr11:86895364-86895556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr11:13067678-13067474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
112, 128
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr11:13162326-13162530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 128
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr11:43914279-43914481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
8-214
               

               
Cow position:
               
chr11:42835960-42835752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
8-219
               

               
Cow position:
               
chr11:53773669-53773892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
172, 0
               

               
Conread position:
               
8-225
               

               
Cow position:
               
chr11:25783700-25783910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
157, 0
               

               
Conread position:
               
8-240
               

               
Cow position:
               
chr11:42084688-42084462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
129, 169
               

               
Conread position:
               
13-174
               

               
Cow position:
               
chr11:18509038-18508877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
13-213
               

               
Cow position:
               
chr11:46884366-46884567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
183, 0
               

               
Conread position:
               
13-213
               

               
Cow position:
               
chr11:49396533-49396327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
163, 128
               

               
Conread position:
               
13-223
               

               
Cow position:
               
chr11:32254224-32254003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
167, 108
               

               
Conread position:
               
14-205
               

               
Cow position:
               
chr11:21885827-21886020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
162, 47
               

               
Conread position:
               
14-222
               

               
Cow position:
               
chr11:44032005-44032203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
18-221
               

               
Cow position:
               
chr11:25968855-25968654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
20-174
               

               
Cow position:
               
chr11:81406169-81406015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
39, 90
               

               
Conread position:
               
20-208
               

               
Cow position:
               
chr11:5486013-5486199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
146, 92
               

               
Conread position:
               
20-213
               

               
Cow position:
               
chr11:76890045-76890243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
156, 0
               

               
Conread position:
               
20-215
               

               
Cow position:
               
chr11:18924745-18924937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
78, 87
               

               
Conread position:
               
21-158
               

               
Cow position:
               
chr11:29786498-29786357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
21-160
               

               
Cow position:
               
chr11:2835859-2835998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
21-173
               

               
Cow position:
               
chr11:60720455-60720303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
21-174
               

               
Cow position:
               
chr11:17517399-17517554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
21-206
               

               
Cow position:
               
chr11:8437693-8437504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
90, 173
               

               
Conread position:
               
21-207
               

               
Cow position:
               
chr11:8545018-8544834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
14, 155
               

               
Conread position:
               
21-222
               

               
Cow position:
               
chr11:16314873-16315074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
21-222
               

               
Cow position:
               
chr11:63999091-63998894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
22-208
               

               
Cow position:
               
chr11:41278187-41278381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
158, 0
               

               
Conread position:
               
22-213
               

               
Cow position:
               
chr11:44619956-44620152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
23-170
               

               
Cow position:
               
chr11:30192181-30192329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
24-174
               

               
Cow position:
               
chr11:34778440-34778290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
28-174
               

               
Cow position:
               
chr11:8670018-8670169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
37-174
               

               
Cow position:
               
chr11:37435971-37435835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
37-214
               

               
Cow position:
               
chr11:12555289-12555104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
37-221
               

               
Cow position:
               
chr11:36847184-36847365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
38-174
               

               
Cow position:
               
chr11:62812932-62812800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
38-179
               

               
Cow position:
               
chr11:34136258-34136398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
38-208
               

               
Cow position:
               
chr11:15772696-15772530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr11:26057633-26057459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 139
               

               
Conread position:
               
38-214
               

               
Cow position:
               
chr11:62620394-62620575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
142, 87
               

               
Conread position:
               
38-220
               

               
Cow position:
               
chr11:63165629-63165456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
38-225
               

               
Cow position:
               
chr11:63475655-63475471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
130, 0
               

               
Conread position:
               
39-208
               

               
Cow position:
               
chr11:3715258-3715433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
39-208
               

               
Cow position:
               
chr11:41281063-41281232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
39-208
               

               
Cow position:
               
chr11:70600810-70600633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
39-210
               

               
Cow position:
               
chr11:79548919-79548748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 90
               

               
Conread position:
               
39-215
               

               
Cow position:
               
chr11:81175615-81175788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 80
               

               
Conread position:
               
39-221
               

               
Cow position:
               
chr11:68570362-68570175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
40-242
               

               
Cow position:
               
chr11:17553061-17552860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 56
               

               
Conread position:
               
44-166
               

               
Cow position:
               
chr11:13864081-13863958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
44-174
               

               
Cow position:
               
chr11:6320109-6319979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-174
               

               
Cow position:
               
chr11:62889870-62889740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-178
               

               
Cow position:
               
chr11:43641410-43641544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-197
               

               
Cow position:
               
chr11:36300558-36300401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
132, 66
               

               
Conread position:
               
44-205
               

               
Cow position:
               
chr11:38236275-38236436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
136, 114
               

               
Conread position:
               
44-207
               

               
Cow position:
               
chr11:35213144-35212978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 80
               

               
Conread position:
               
44-210
               

               
Cow position:
               
chr11:4411845-4411688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
44-210
               

               
Cow position:
               
chr11:44176619-44176787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
121, 78
               

               
Conread position:
               
44-211
               

               
Cow position:
               
chr11:1980244-1980068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
44-211
               

               
Cow position:
               
chr11:71868579-71868413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
137, 98
               

               
Conread position:
               
44-215
               

               
Cow position:
               
chr11:46010230-46010057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr11:3896677-3896502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 132
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr11:42066888-42067061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
44-226
               

               
Cow position:
               
chr11:26442481-26442301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
178, 137
               

               
Conread position:
               
44-234
               

               
Cow position:
               
chr11:81614490-81614307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
115, 119
               

               
Conread position:
               
44-239
               

               
Cow position:
               
chr11:33369174-33369372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
44-255
               

               
Cow position:
               
chr11:76248073-76248290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
139, 62
               

               
Conread position:
               
46-166
               

               
Cow position:
               
chr11:46747835-46747715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
46-210
               

               
Cow position:
               
chr11:5559307-5559479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
46-211
               

               
Cow position:
               
chr11:4363888-4363720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
134, 81
               

               
Conread position:
               
46-214
               

               
Cow position:
               
chr11:37100147-37099971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
120, 64
               

               
Conread position:
               
48-213
               

               
Cow position:
               
chr11:66939565-66939392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
51-213
               

               
Cow position:
               
chr11:44859256-44859096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
145, 71
               

               
Conread position:
               
51-222
               

               
Cow position:
               
chr11:20117105-20117274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
51-227
               

               
Cow position:
               
chr11:44016274-44016447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
51-242
               

               
Cow position:
               
chr11:73977270-73977079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
99, 75
               

               
Conread position:
               
218-441
               

               
Cow position:
               
chr11:63659892-63659663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
133, 26
               

               
Conread position:
               
1-158
               

               
Cow position:
               
chr12:7457585-7457427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
1-174
               

               
Cow position:
               
chr12:26147212-26147038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
26, 133
               

               
Conread position:
               
1-212
               

               
Cow position:
               
chr12:26357411-26357193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
119, 201
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr12:18518631-18518845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
15, 130
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr12:36261647-36261869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
23, 178
               

               
Conread position:
               
1-239
               

               
Cow position:
               
chr12:43974251-43974482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
7-222
               

               
Cow position:
               
chr12:35241139-35240929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
8-174
               

               
Cow position:
               
chr12:16386490-16386325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
8-222
               

               
Cow position:
               
chr12:37123616-37123830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 103
               

               
Conread position:
               
8-222
               

               
Cow position:
               
chr12:42602276-42602062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
109, 170
               

               
Conread position:
               
13-173
               

               
Cow position:
               
chr12:11587746-11587900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
14-222
               

               
Cow position:
               
chr12:39150079-39149871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
18, 24
               

               
Conread position:
               
20-208
               

               
Cow position:
               
chr12:11230212-11230401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
12, 170
               

               
Conread position:
               
20-225
               

               
Cow position:
               
chr12:31530275-31530487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
78, 22
               

               
Conread position:
               
21-173
               

               
Cow position:
               
chr12:30661970-30661820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
21-222
               

               
Cow position:
               
chr12:21780142-21780341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
180, 97
               

               
Conread position:
               
21-245
               

               
Cow position:
               
chr12:27563397-27563172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
155, 96
               

               
Conread position:
               
22-212
               

               
Cow position:
               
chr12:28131570-28131767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
36-166
               

               
Cow position:
               
chr12:42254662-42254791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
37-166
               

               
Cow position:
               
chr12:30042721-30042850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
37-174
               

               
Cow position:
               
chr12:29675146-29675009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
37-201
               

               
Cow position:
               
chr12:11106585-11106422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
37-213
               

               
Cow position:
               
chr12:26749956-26749774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
131, 169
               

               
Conread position:
               
37-221
               

               
Cow position:
               
chr12:22323278-22323090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
37-225
               

               
Cow position:
               
chr12:12699645-12699445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
38-174
               

               
Cow position:
               
chr12:15122323-15122455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr12:43854890-43855056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
38-259
               

               
Cow position:
               
chr12:16670264-16670491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
61, 54
               

               
Conread position:
               
39-158
               

               
Cow position:
               
chr12:42966993-42967109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
39-178
               

               
Cow position:
               
chr12:9514359-9514502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
39-209
               

               
Cow position:
               
chr12:27176638-27176811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
39-209
               

               
Cow position:
               
chr12:27192366-27192193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
44-173
               

               
Cow position:
               
chr12:43619283-43619413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
44-201
               

               
Cow position:
               
chr12:10895550-10895389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
44-209
               

               
Cow position:
               
chr12:26868811-26868641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
44-215
               

               
Cow position:
               
chr12:20356806-20356631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr12:9482302-9482127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 43
               

               
Conread position:
               
44-259
               

               
Cow position:
               
chr12:15103277-15103489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
143, 124
               

               
Conread position:
               
45-206
               

               
Cow position:
               
chr12:15050619-15050455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
41, 45
               

               
Conread position:
               
45-211
               

               
Cow position:
               
chr12:41159591-41159758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
119, 135
               

               
Conread position:
               
45-247
               

               
Cow position:
               
chr12:38774239-38774033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
135, 64
               

               
Conread position:
               
46-222
               

               
Cow position:
               
chr12:1089388-1089215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
33, 11
               

               
Conread position:
               
46-222
               

               
Cow position:
               
chr12:14396780-14396616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
46-229
               

               
Cow position:
               
chr12:22047926-22048106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
47-174
               

               
Cow position:
               
chr12:3057093-3057219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
51-224
               

               
Cow position:
               
chr12:7884671-7884503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
51-246
               

               
Cow position:
               
chr12:13995788-13995585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 185
               

               
Conread position:
               
54-222
               

               
Cow position:
               
chr12:27663980-27663815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
59-222
               

               
Cow position:
               
chr12:39738281-39738122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr13:37592957-37593163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr13:42200608-42200405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 126
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr13:15041483-15041702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 113
               

               
Conread position:
               
2-210
               

               
Cow position:
               
chr13:15257381-15257593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
2-213
               

               
Cow position:
               
chr13:32283115-32282898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 204
               

               
Conread position:
               
8-173
               

               
Cow position:
               
chr13:10924941-10925104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
8-213
               

               
Cow position:
               
chr13:52055612-52055813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
197, 123
               

               
Conread position:
               
8-222
               

               
Cow position:
               
chr13:32017532-32017745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
197, 167
               

               
Conread position:
               
8-237
               

               
Cow position:
               
chr13:11147037-11146798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
166, 0
               

               
Conread position:
               
13-212
               

               
Cow position:
               
chr13:40491190-40491000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
85, 113
               

               
Conread position:
               
13-227
               

               
Cow position:
               
chr13:10220938-10220720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 191
               

               
Conread position:
               
13-238
               

               
Cow position:
               
chr13:51695943-51695712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
96, 15
               

               
Conread position:
               
13-242
               

               
Cow position:
               
chr13:20367904-20368129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
159, 0
               

               
Conread position:
               
14-209
               

               
Cow position:
               
chr13:55674234-55674424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
14-220
               

               
Cow position:
               
chr13:33854710-33854918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
162, 111
               

               
Conread position:
               
18-215
               

               
Cow position:
               
chr13:37614226-37614417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
21-166
               

               
Cow position:
               
chr13:17716547-17716692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
21-178
               

               
Cow position:
               
chr13:49476045-49475885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
21-207
               

               
Cow position:
               
chr13:21275826-21275633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
21-209
               

               
Cow position:
               
chr13:14645019-14644839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 105
               

               
Conread position:
               
21-210
               

               
Cow position:
               
chr13:14063554-14063737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
181, 88
               

               
Conread position:
               
21-210
               

               
Cow position:
               
chr13:25520948-25521139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
104, 159
               

               
Conread position:
               
21-210
               

               
Cow position:
               
chr13:34873556-34873358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
21-243
               

               
Cow position:
               
chr13:12449021-12449238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
21-243
               

               
Cow position:
               
chr13:21280530-21280745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
154, 0
               

               
Conread position:
               
22-245
               

               
Cow position:
               
chr13:3153716-3153496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
183, 88
               

               
Conread position:
               
23-226
               

               
Cow position:
               
chr13:49392984-49393194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
23-255
               

               
Cow position:
               
chr13:584905-585132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
34-210
               

               
Cow position:
               
chr13:16163536-16163368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
141, 87
               

               
Conread position:
               
37-173
               

               
Cow position:
               
chr13:18999486-18999350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
37-174
               

               
Cow position:
               
chr13:24155465-24155328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
65, 60
               

               
Conread position:
               
37-178
               

               
Cow position:
               
chr13:8667570-8667429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
37-195
               

               
Cow position:
               
chr13:46298805-46298965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 88
               

               
Conread position:
               
37-206
               

               
Cow position:
               
chr13:14544086-14543913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
123, 130
               

               
Conread position:
               
37-210
               

               
Cow position:
               
chr13:60509169-60509340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
37-213
               

               
Cow position:
               
chr13:6113575-6113750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
101, 140
               

               
Conread position:
               
37-218
               

               
Cow position:
               
chr13:20271274-20271467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 26
               

               
Conread position:
               
37-222
               

               
Cow position:
               
chr13:17975012-17975189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
61, 70
               

               
Conread position:
               
37-225
               

               
Cow position:
               
chr13:17822999-17823183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
38-160
               

               
Cow position:
               
chr13:8637648-8637526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
38-174
               

               
Cow position:
               
chr13:1339191-1339327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
38-174
               

               
Cow position:
               
chr13:16908167-16908031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
38-208
               

               
Cow position:
               
chr13:21171622-21171796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
38-209
               

               
Cow position:
               
chr13:13320747-13320577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
142, 84
               

               
Conread position:
               
38-213
               

               
Cow position:
               
chr13:37069295-37069115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
38-222
               

               
Cow position:
               
chr13:11103249-11103435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 146
               

               
Conread position:
               
39-170
               

               
Cow position:
               
chr13:16834581-16834715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
63, 59
               

               
Conread position:
               
39-174
               

               
Cow position:
               
chr13:21127388-21127524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
39-200
               

               
Cow position:
               
chr13:4790169-4790339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
39-210
               

               
Cow position:
               
chr13:21866684-21866859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
127, 67
               

               
Conread position:
               
39-212
               

               
Cow position:
               
chr13:15872390-15872208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
39-218
               

               
Cow position:
               
chr13:46391304-46391121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
39-221
               

               
Cow position:
               
chr13:23805068-23805248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
39-225
               

               
Cow position:
               
chr13:53357782-53357583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
41-210
               

               
Cow position:
               
chr13:62251897-62252066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
140, 68
               

               
Conread position:
               
44-166
               

               
Cow position:
               
chr13:25547638-25547760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-170
               

               
Cow position:
               
chr13:28376616-28376740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
44-188
               

               
Cow position:
               
chr13:17135269-17135414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
44-206
               

               
Cow position:
               
chr13:20115192-20115033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
44-207
               

               
Cow position:
               
chr13:44003645-44003476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
79, 74
               

               
Conread position:
               
44-211
               

               
Cow position:
               
chr13:56019050-56019224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 98
               

               
Conread position:
               
44-213
               

               
Cow position:
               
chr13:15162688-15162854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
44-213
               

               
Cow position:
               
chr13:15993330-15993154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
118, 24
               

               
Conread position:
               
44-213
               

               
Cow position:
               
chr13:20378376-20378546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
126, 73
               

               
Conread position:
               
44-213
               

               
Cow position:
               
chr13:43576958-43576789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
44-215
               

               
Cow position:
               
chr13:23685055-23685223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
44-215
               

               
Cow position:
               
chr13:26377472-26377652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
35, 62
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr13:3149487-3149660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
44-222
               

               
Cow position:
               
chr13:18995070-18994886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
44-224
               

               
Cow position:
               
chr13:5659823-5659997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
44-224
               

               
Cow position:
               
chr13:25926734-25926556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
161, 81
               

               
Conread position:
               
44-241
               

               
Cow position:
               
chr13:48127052-48126848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
130, 167
               

               
Conread position:
               
44-242
               

               
Cow position:
               
chr13:28605447-28605643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
173, 0
               

               
Conread position:
               
44-332
               

               
Cow position:
               
chr13:31398403-31398108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
122, 48
               

               
Conread position:
               
45-168
               

               
Cow position:
               
chr13:8537765-8537641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
45-174
               

               
Cow position:
               
chr13:44278292-44278162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
45-175
               

               
Cow position:
               
chr13:29665964-29665834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
45-210
               

               
Cow position:
               
chr13:52894090-52893922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
120, 66
               

               
Conread position:
               
45-213
               

               
Cow position:
               
chr13:10279868-10279693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
45-222
               

               
Cow position:
               
chr13:21246766-21246940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
45-222
               

               
Cow position:
               
chr13:45352974-45352789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
45-227
               

               
Cow position:
               
chr13:20698340-20698529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
121, 162
               

               
Conread position:
               
45-349
               

               
Cow position:
               
chr13:39347283-39347597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
135, 6
               

               
Conread position:
               
46-178
               

               
Cow position:
               
chr13:51128130-51128262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
46-218
               

               
Cow position:
               
chr13:30148621-30148791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
134, 79
               

               
Conread position:
               
46-222
               

               
Cow position:
               
chr13:24094372-24094544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
47-178
               

               
Cow position:
               
chr13:2776229-2776098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
47-222
               

               
Cow position:
               
chr13:18058309-18058475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
158, 51
               

               
Conread position:
               
48-197
               

               
Cow position:
               
chr13:46516001-46515846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
48-208
               

               
Cow position:
               
chr13:23399706-23399542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
129, 83
               

               
Conread position:
               
48-210
               

               
Cow position:
               
chr13:25817467-25817314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
51-197
               

               
Cow position:
               
chr13:42614021-42613878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
113, 71
               

               
Conread position:
               
51-202
               

               
Cow position:
               
chr13:42203962-42203813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 72
               

               
Conread position:
               
51-208
               

               
Cow position:
               
chr13:26261851-26262006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
143, 124
               

               
Conread position:
               
51-213
               

               
Cow position:
               
chr13:20854519-20854689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
71, 50
               

               
Conread position:
               
51-222
               

               
Cow position:
               
chr13:8682392-8682224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 123
               

               
Conread position:
               
52-209
               

               
Cow position:
               
chr13:57929634-57929787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
114, 79
               

               
Conread position:
               
55-159
               

               
Cow position:
               
chr13:242568-242464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
57-201
               

               
Cow position:
               
chr13:8423336-8423188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-173
               

               
Cow position:
               
chr14:24922144-24921973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
1-213
               

               
Cow position:
               
chr14:4848393-4848174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr14:11285622-11285404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
179, 30
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr14:26655088-26655312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
37, 31
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr14:10609726-10609476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
30, 210
               

               
Conread position:
               
3-251
               

               
Cow position:
               
chr14:20826534-20826292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
6-174
               

               
Cow position:
               
chr14:22989074-22988909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
22, 12
               

               
Conread position:
               
6-220
               

               
Cow position:
               
chr14:1708617-1708828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
169, 0
               

               
Conread position:
               
8-174
               

               
Cow position:
               
chr14:42419236-42419408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
8-236
               

               
Cow position:
               
chr14:25986553-25986329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
50, 168
               

               
Conread position:
               
8-241
               

               
Cow position:
               
chr14:15469945-15470187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
132, 39
               

               
Conread position:
               
13-199
               

               
Cow position:
               
chr14:50362826-50362633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
153, 148
               

               
Conread position:
               
13-208
               

               
Cow position:
               
chr14:7198530-7198327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
13-222
               

               
Cow position:
               
chr14:27303692-27303475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
13, 169
               

               
Conread position:
               
13-224
               

               
Cow position:
               
chr14:27823464-27823252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
209, 0
               

               
Conread position:
               
20-213
               

               
Cow position:
               
chr14:20110697-20110895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
160, 105
               

               
Conread position:
               
21-168
               

               
Cow position:
               
chr14:41191071-41191218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               
21-174UCSC Genome Browser

               
Conread position:
               

               

               
Cow position:
               
chr14:28924192-28924039 (view  custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               
21-222UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr14:18270385-18270184 (view  custom track)

               
               
               
Alignm length:
205

               
               
               
Alignm identity:
144

               
               
               
Alignm E-value:
1e-25

               
               
               
Alignm gaps (pig, cow):
158, 104
22-223UCSC Genome Browser

               
               
               
Conread position:

               
               
               
Cow position:
chr14:13846008-13845809 (view  custom track)

               
               
               
Alignm length:
207

               
               
               
Alignm identity:
151

               
               
               
Alignm E-value:
4e-27

               
               
               
Alignm gaps (pig, cow):
158, 76

               
               
               Conread position:37-166
               
               
               Cow position:chr14:40952279-40952148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr14:28378367-28378231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr14:40754239-40754370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:37-178
               
               
               Cow position:chr14:18412583-18412724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr14:7036349-7036522 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr14:15428486-15428306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):128, 167

               
               
               Conread position:37-213
               
               
               Cow position:chr14:44713427-44713254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:37-221
               
               
               Cow position:chr14:8083206-8083021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):159, 73

               
               
               Conread position:38-174
               
               
               Cow position:chr14:30023190-30023326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-207
               
               
               Cow position:chr14:32784108-32784285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:38-213
               
               
               Cow position:chr14:19618744-19618917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):163, 60

               
               
               Conread position:39-174
               
               
               Cow position:chr14:21592997-21593128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:39-210
               
               
               Cow position:chr14:19832387-19832563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):127, 95

               
               
               Conread position:39-213
               
               
               Cow position:chr14:26116068-26115886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):141, 169

               
               
               Conread position:39-215
               
               
               Cow position:chr14:10937679-10937503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-226
               
               
               Cow position:chr14:26800305-26800121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:39-227
               
               
               Cow position:chr14:12072950-12073133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):181, 71

               
               
               Conread position:39-228
               
               
               Cow position:chr14:11296450-11296256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:39-229
               
               
               Cow position:chr14:35421076-35421265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):31, 80

               
               
               Conread position:40-221
               
               
               Cow position:chr14:28304778-28304957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):19, 55

               
               
               Conread position:44-166
               
               
               Cow position:chr14:29282756-29282634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr14:31342213-31342091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:93
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr14:37504516-37504386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-207
               
               
               Cow position:chr14:5668117-5668289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-207
               
               
               Cow position:chr14:29965020-29964858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr14:27364581-27364407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr14:13385369-13385204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:44-221
               
               
               Cow position:chr14:16344145-16344328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:45-222
               
               
               Cow position:chr14:40230635-40230809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:46-179
               
               
               Cow position:chr14:10939862-10939995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-222
               
               
               Cow position:chr14:10440927-10440749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 133

               
               
               Conread position:46-222
               
               
               Cow position:chr14:36559227-36559398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):159, 74

               
               
               Conread position:46-229
               
               
               Cow position:chr14:33457044-33457232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):121, 64

               
               
               Conread position:47-212
               
               
               Cow position:chr14:21530075-21530244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:51-174
               
               
               Cow position:chr14:13515995-13516118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-210
               
               
               Cow position:chr14:35381585-35381424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:51-213
               
               
               Cow position:chr14:31893574-31893417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 30

               
               
               Conread position:52-214
               
               
               Cow position:chr14:19321514-19321683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):114, 159

               
               
               Conread position:53-238
               
               
               Cow position:chr14:12138009-12137824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr15:12785521-12785348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):72, 20

               
               
               Conread position:1-174
               
               
               Cow position:chr15:34223959-34223786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:1-174
               
               
               Cow position:chr15:38652508-38652682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 84

               
               
               Conread position:1-210
               
               
               Cow position:chr15:33382673-33382463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:1-214
               
               
               Cow position:chr15:49483721-49483509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):30, 107

               
               
               Conread position:1-228
               
               
               Cow position:chr15:26896601-26896832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:2-216
               
               
               Cow position:chr15:13395639-13395430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:2-223
               
               
               Cow position:chr15:13432577-13432346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):14, 131

               
               
               Conread position:7-174
               
               
               Cow position:chr15:39619227-39619060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-210
               
               
               Cow position:chr15:17084294-17084083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:7-214
               
               
               Cow position:chr15:608231-608021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:8-214
               
               
               Cow position:chr15:20459224-20459429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):197, 167

               
               
               Conread position:8-215
               
               
               Cow position:chr15:43626553-43626347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):94, 90

               
               
               Conread position:8-217
               
               
               Cow position:chr15:36793410-36793622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:8-222
               
               
               Cow position:chr15:16928010-16928227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):165, 114

               
               
               Conread position:8-224
               
               
               Cow position:chr15:2968422-2968198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):22, 200

               
               
               Conread position:13-173
               
               
               Cow position:chr15:20534371-20534531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-210
               
               
               Cow position:chr15:50333058-50332858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):106, 33

               
               
               Conread position:18-222
               
               
               Cow position:chr15:20566988-20566793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:21-208
               
               
               Cow position:chr15:19002209-19002393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:21-213
               
               
               Cow position:chr15:6227111-6227302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):155, 103

               
               
               Conread position:21-222
               
               
               Cow position:chr15:21893849-21893648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):155, 18

               
               
               Conread position:21-229
               
               
               Cow position:chr15:48052533-48052740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):155, 104

               
               
               Conread position:22-223
               
               
               Cow position:chr15:44810139-44809931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):158, 185

               
               
               Conread position:36-208
               
               
               Cow position:chr15:23572630-23572810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr15:12045482-12045620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:37-197
               
               
               Cow position:chr15:41527917-41528076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):143, 89

               
               
               Conread position:37-207
               
               
               Cow position:chr15:36391729-36391551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:37-215
               
               
               Cow position:chr15:18073774-18073590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:37-222
               
               
               Cow position:chr15:24453019-24453202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):65, 90

               
               
               Conread position:38-167
               
               
               Cow position:chr15:40562400-40562527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:38-205
               
               
               Cow position:chr15:44119413-44119587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:38-217
               
               
               Cow position:chr15:44089109-44089293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):55, 61

               
               
               Conread position:38-222
               
               
               Cow position:chr15:22443930-22444114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-241
               
               
               Cow position:chr15:46059416-46059212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):72, 140

               
               
               Conread position:38-243
               
               
               Cow position:chr15:4284428-4284224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):175, 137

               
               
               Conread position:39-221
               
               
               Cow position:chr15:21943108-21942915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):79, 67

               
               
               Conread position:39-222
               
               
               Cow position:chr15:7811476-7811655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:39-239
               
               
               Cow position:chr15:38862150-38861946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:39-254
               
               
               Cow position:chr15:36435258-36435035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:44-148
               
               
               Cow position:chr15:27900462-27900566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:105
               
               
               Alignm identity:85
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr15:12913450-12913578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr15:26617987-26617856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:44-208
               
               
               Cow position:chr15:16415345-16415175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr15:16657521-16657358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr15:4500751-4500583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 133

               
               
               Conread position:44-213
               
               
               Cow position:chr15:21821876-21822047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):152, 0

               
               
               Conread position:44-214
               
               
               Cow position:chr15:19553876-19554053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):122, 66

               
               
               Conread position:44-215
               
               
               Cow position:chr15:17762957-17762786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):136, 74

               
               
               Conread position:44-225
               
               
               Cow position:chr15:32300426-32300244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:44-225
               
               
               Cow position:chr15:42380976-42380791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):136, 164

               
               
               Conread position:44-241
               
               
               Cow position:chr15:28099160-28098968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):132, 77

               
               
               Conread position:46-174
               
               
               Cow position:chr15:17196194-17196066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-210
               
               
               Cow position:chr15:39473886-39474047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:46-212
               
               
               Cow position:chr15:17124422-17124595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):134, 161

               
               
               Conread position:47-213
               
               
               Cow position:chr15:18703890-18704048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):50, 74

               
               
               Conread position:48-174
               
               
               Cow position:chr15:14760593-14760719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-213
               
               
               Cow position:chr15:26380703-26380873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:54-221
               
               
               Cow position:chr15:2931529-2931694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 77

               
               
               Conread position:1-167
               
               
               Cow position:chr16:23811121-23811285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr16:7442101-7441931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr16:12220678-12220855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1-197
               
               
               Cow position:chr16:30305815-30305622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):99, 31

               
               
               Conread position:1-206
               
               
               Cow position:chr16:23955835-23955622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:1-208
               
               
               Cow position:chr16:21370190-21369977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):96, 31

               
               
               Conread position:1-210
               
               
               Cow position:chr16:44138495-44138285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr16:7928388-7928165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr16:19053886-19053670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):20, 126

               
               
               Conread position:1-213
               
               
               Cow position:chr16:33198440-33198217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr16:2750978-2751180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:1-222
               
               
               Cow position:chr16:8738062-8738286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):15, 122

               
               
               Conread position:1-237
               
               
               Cow position:chr16:30662272-30662033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):34, 163

               
               
               Conread position:2-210
               
               
               Cow position:chr16:8065890-8065683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):28, 175

               
               
               Conread position:2-210
               
               
               Cow position:chr16:15714107-15714317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:2-218
               
               
               Cow position:chr16:8522387-8522170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):160, 29

               
               
               Conread position:2-221
               
               
               Cow position:chr16:38243663-38243438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):178, 0

               
               
               Conread position:7-173
               
               
               Cow position:chr16:31575149-31575315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-174
               
               
               Cow position:chr16:38663705-38663539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:7-222
               
               
               Cow position:chr16:2223394-2223179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):24, 170

               
               
               Conread position:8-174
               
               
               Cow position:chr16:7812696-7812862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr16:9730200-9730035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr16:32142096-32142261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:8-210
               
               
               Cow position:chr16:56615497-56615289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):158, 78

               
               
               Conread position:8-214
               
               
               Cow position:chr16:10249813-10249607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-217
               
               
               Cow position:chr16:46548263-46548042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:8-220
               
               
               Cow position:chr16:11003559-11003350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:13-210
               
               
               Cow position:chr16:45122046-45122244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):124, 166

               
               
               Conread position:13-222
               
               
               Cow position:chr16:22323799-22323596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:13-222
               
               
               Cow position:chr16:43308550-43308343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):167, 74

               
               
               Conread position:13-231
               
               
               Cow position:chr16:50442559-50442778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:21-166
               
               
               Cow position:chr16:50289171-50289312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr16:15023612-15023460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr16:33290403-33290556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-206
               
               
               Cow position:chr16:44144407-44144600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:21-210
               
               
               Cow position:chr16:18048136-18047950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:21-222
               
               
               Cow position:chr16:9596389-9596587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):159, 103

               
               
               Conread position:21-222
               
               
               Cow position:chr16:45193790-45193581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):159, 106

               
               
               Conread position:21-236
               
               
               Cow position:chr16:53451724-53451931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:22-210
               
               
               Cow position:chr16:21044316-21044512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:23-197
               
               
               Cow position:chr16:43758625-43758446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:23-210
               
               
               Cow position:chr16:13996175-13995983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:23-221
               
               
               Cow position:chr16:8493970-8493776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:23-222
               
               
               Cow position:chr16:38581023-38581219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):157, 0

               
               
               Conread position:29-222
               
               
               Cow position:chr16:21002348-21002142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:33-203
               
               
               Cow position:chr16:46184188-46184356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:36-215
               
               
               Cow position:chr16:56595356-56595171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):144, 171

               
               
               Conread position:37-173
               
               
               Cow position:chr16:7665672-7665808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr16:9097058-9097195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr16:15949473-15949339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:37-204
               
               
               Cow position:chr16:5243121-5243288 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):101, 143

               
               
               Conread position:37-204
               
               
               Cow position:chr16:14343614-14343782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr16:8810059-8809887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):143, 85

               
               
               Conread position:37-243
               
               
               Cow position:chr16:25419219-25419018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):195, 138

               
               
               Conread position:38-166
               
               
               Cow position:chr16:4192398-4192270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-173
               
               
               Cow position:chr16:27327089-27326954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr16:28233269-28233133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-215
               
               
               Cow position:chr16:56912651-56912476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):103, 9

               
               
               Conread position:39-174
               
               
               Cow position:chr16:19282042-19282176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:39-210
               
               
               Cow position:chr16:4857065-4856897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr16:10011816-10011632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr16:20614535-20614701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:39-224
               
               
               Cow position:chr16:55784715-55784529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):87, 73

               
               
               Conread position:39-240
               
               
               Cow position:chr16:42107666-42107862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr16:4277512-4277391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:44-173
               
               
               Cow position:chr16:28444448-28444319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr16:3049112-3048983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr16:15407517-15407387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr16:31241252-31241123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:44-208
               
               
               Cow position:chr16:56082323-56082151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr16:10032904-10033078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr16:20205503-20205672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-215
               
               
               Cow position:chr16:29311565-29311747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:44-244
               
               
               Cow position:chr16:9958871-9959071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 82

               
               
               Conread position:45-173
               
               
               Cow position:chr16:47662771-47662899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-210
               
               
               Cow position:chr16:11775951-11775795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:46-207
               
               
               Cow position:chr16:24672819-24672650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):46, 53

               
               
               Conread position:46-210
               
               
               Cow position:chr16:21442567-21442396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):72, 37

               
               
               Conread position:46-221
               
               
               Cow position:chr16:47274683-47274511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:46-222
               
               
               Cow position:chr16:17617319-17617148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:46-248
               
               
               Cow position:chr16:40446305-40446509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 133

               
               
               Conread position:48-174
               
               
               Cow position:chr16:51393345-51393218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 53

               
               
               Conread position:48-242
               
               
               Cow position:chr16:27117350-27117551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):118, 175

               
               
               Conread position:52-241
               
               
               Cow position:chr16:16232106-16232295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr17:6329152-6329321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 132

               
               
               Conread position:1-177
               
               
               Cow position:chr17:13414331-13414153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1-206
               
               
               Cow position:chr17:1634455-1634255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:1-228
               
               
               Cow position:chr17:21039594-21039816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):15, 126

               
               
               Conread position:1-248
               
               
               Cow position:chr17:1463294-1463051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 176

               
               
               Conread position:1-255
               
               
               Cow position:chr17:21718960-21718702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):16, 111

               
               
               Conread position:2-250
               
               
               Cow position:chr17:25117922-25118177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):19, 224

               
               
               Conread position:3-197
               
               
               Cow position:chr17:32333052-32332852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):13, 117

               
               
               Conread position:7-213
               
               
               Cow position:chr17:40355301-40355506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):14, 170

               
               
               Conread position:8-166
               
               
               Cow position:chr17:5011883-5012042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-208
               
               
               Cow position:chr17:24559336-24559545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:8-210
               
               
               Cow position:chr17:21806406-21806207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):91, 99

               
               
               Conread position:8-222
               
               
               Cow position:chr17:17222386-17222610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:8-222
               
               
               Cow position:chr17:26072715-26072501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):172, 193

               
               
               Conread position:10-151
               
               
               Cow position:chr17:43957708-43957849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-235
               
               
               Cow position:chr17:14652729-14652504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:14-210
               
               
               Cow position:chr17:21466211-21466005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:14-215
               
               
               Cow position:chr17:25473228-25473033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):191, 111

               
               
               Conread position:14-220
               
               
               Cow position:chr17:9824721-9824919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:15-230
               
               
               Cow position:chr17:32989529-32989735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:15-230
               
               
               Cow position:chr17:32993571-32993364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):191, 107

               
               
               Conread position:20-174
               
               
               Cow position:chr17:5013018-5012859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:21-166
               
               
               Cow position:chr17:26757389-26757243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:21-209
               
               
               Cow position:chr17:28795924-28795739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:21-244
               
               
               Cow position:chr17:20884582-20884805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):104, 180

               
               
               Conread position:23-213
               
               
               Cow position:chr17:20800874-20801071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:34-222
               
               
               Cow position:chr17:21236594-21236782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):154, 145

               
               
               Conread position:37-174
               
               
               Cow position:chr17:6767186-6767049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-203
               
               
               Cow position:chr17:20992967-20992803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):100, 73

               
               
               Conread position:37-212
               
               
               Cow position:chr17:12289334-12289154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):144, 82

               
               
               Conread position:37-213
               
               
               Cow position:chr17:27795729-27795912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):129, 44

               
               
               Conread position:37-222
               
               
               Cow position:chr17:25467057-25467241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:37-229
               
               
               Cow position:chr17:25584316-25584507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:37-231
               
               
               Cow position:chr17:6787011-6787216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:38-173
               
               
               Cow position:chr17:2810708-2810842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr17:11618660-11618796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr17:11921089-11920953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-208
               
               
               Cow position:chr17:19544156-19543981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):19, 41

               
               
               Conread position:38-209
               
               
               Cow position:chr17:24587700-24587864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:38-221
               
               
               Cow position:chr17:20881733-20881556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:38-222
               
               
               Cow position:chr17:26225103-26225282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:38-245
               
               
               Cow position:chr17:21489549-21489344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 83

               
               
               Conread position:39-212
               
               
               Cow position:chr17:21870648-21870470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr17:4264300-4264483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr17:7733041-7732859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:39-222
               
               
               Cow position:chr17:17782132-17782317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):70, 87

               
               
               Conread position:39-222
               
               
               Cow position:chr17:18201834-18202015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):72, 137

               
               
               Conread position:39-222
               
               
               Cow position:chr17:32027375-32027183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):86, 183

               
               
               Conread position:39-249
               
               
               Cow position:chr17:31231884-31231678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 93

               
               
               Conread position:40-211
               
               
               Cow position:chr17:40276818-40276988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):140, 82

               
               
               Conread position:43-224
               
               
               Cow position:chr17:34187957-34188136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):171, 132

               
               
               Conread position:44-174
               
               
               Cow position:chr17:3387799-3387928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr17:42780242-42780110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):57, 43

               
               
               Conread position:44-178
               
               
               Cow position:chr17:26183426-26183560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-205
               
               
               Cow position:chr17:20359194-20359353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):71, 132

               
               
               Conread position:44-209
               
               
               Cow position:chr17:4817609-4817782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr17:7803093-7802919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr17:36814443-36814622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:44-217
               
               
               Cow position:chr17:39963959-39964138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):136, 52

               
               
               Conread position:44-221
               
               
               Cow position:chr17:9260530-9260344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):132, 78

               
               
               Conread position:44-221
               
               
               Cow position:chr17:15355013-15355187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:44-222
               
               
               Cow position:chr17:8663586-8663761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):94, 40

               
               
               Conread position:44-226
               
               
               Cow position:chr17:15883753-15883945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:45-214
               
               
               Cow position:chr17:10222127-10221950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:45-217
               
               
               Cow position:chr17:14025827-14025657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):163, 130

               
               
               Conread position:46-210
               
               
               Cow position:chr17:25342657-25342498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:46-221
               
               
               Cow position:chr17:5048014-5048194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:46-222
               
               
               Cow position:chr17:5280571-5280397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):85, 135

               
               
               Conread position:47-166
               
               
               Cow position:chr17:1081289-1081409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:47-210
               
               
               Cow position:chr17:9770588-9770750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:52-197
               
               
               Cow position:chr17:31985851-31985709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:107
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:54-214
               
               
               Cow position:chr17:20157699-20157863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 78

               
               
               Conread position:56-214
               
               
               Cow position:chr17:18673946-18673786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):124, 146

               
               
               Conread position:191-475
               
               
               Cow position:chr17:228469-228183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):20, 55

               
               
               Conread position:193-488
               
               
               Cow position:chr17:6002177-6001879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):18, 51

               
               
               Conread position:204-486
               
               
               Cow position:chr17:23324605-23324318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):147, 40

               
               
               Conread position:1-174
               
               
               Cow position:chr18:21969840-21969666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:1-196
               
               
               Cow position:chr18:2774175-2773978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):22, 102

               
               
               Conread position:1-206
               
               
               Cow position:chr18:32600015-32600229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr18:5632231-5632442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 123

               
               
               Conread position:1-209
               
               
               Cow position:chr18:49038425-49038632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:1-210
               
               
               Cow position:chr18:21782654-21782864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):165, 30

               
               
               Conread position:1-211
               
               
               Cow position:chr18:35751414-35751198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 168

               
               
               Conread position:1-213
               
               
               Cow position:chr18:35827410-35827196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):36, 125

               
               
               Conread position:1-221
               
               
               Cow position:chr18:10977247-10977031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):29, 125

               
               
               Conread position:2-174
               
               
               Cow position:chr18:35874044-35874213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):157, 141

               
               
               Conread position:8-174
               
               
               Cow position:chr18:43283784-43283621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-199
               
               
               Cow position:chr18:23821860-23821671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:8-201
               
               
               Cow position:chr18:50974322-50974118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:8-207
               
               
               Cow position:chr18:50566873-50567080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:13-234
               
               
               Cow position:chr18:53093041-53092814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):112, 144

               
               
               Conread position:14-178
               
               
               Cow position:chr18:24266429-24266264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:14-213
               
               
               Cow position:chr18:49603065-49602871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:14-222
               
               
               Cow position:chr18:44917735-44917935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):191, 104

               
               
               Conread position:14-235
               
               
               Cow position:chr18:1954611-1954385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):113, 144

               
               
               Conread position:21-174
               
               
               Cow position:chr18:42427605-42427751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr18:51643380-51643234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:21-210
               
               
               Cow position:chr18:45185857-45186048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):159, 181

               
               
               Conread position:21-221
               
               
               Cow position:chr18:40063080-40063286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:22-206
               
               
               Cow position:chr18:33896432-33896239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:28-229
               
               
               Cow position:chr18:10051739-10051946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):148, 78

               
               
               Conread position:34-174
               
               
               Cow position:chr18:16545467-16545327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-165
               
               
               Cow position:chr18:56463729-56463602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-208
               
               
               Cow position:chr18:5189692-5189525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:37-224
               
               
               Cow position:chr18:22045412-22045219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):129, 20

               
               
               Conread position:37-224
               
               
               Cow position:chr18:31557159-31556965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:38-160
               
               
               Cow position:chr18:48961936-48962060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr18:17195343-17195211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr18:47175379-47175243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):60, 30

               
               
               Conread position:38-210
               
               
               Cow position:chr18:38937823-38937988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:38-213
               
               
               Cow position:chr18:52382906-52383078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:38-215
               
               
               Cow position:chr18:52251855-52251670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-30
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:38-226
               
               
               Cow position:chr18:50632440-50632260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):183, 68

               
               
               Conread position:38-235
               
               
               Cow position:chr18:3211880-3212076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):142, 86

               
               
               Conread position:39-166
               
               
               Cow position:chr18:45903894-45903769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:39-174
               
               
               Cow position:chr18:35795219-35795085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:39-177
               
               
               Cow position:chr18:8208422-8208285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):72, 84

               
               
               Conread position:39-214
               
               
               Cow position:chr18:3180414-3180582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:39-215
               
               
               Cow position:chr18:50004702-50004531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):165, 84

               
               
               Conread position:43-207
               
               
               Cow position:chr18:48594209-48594050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr18:4758025-4757903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):81, 62

               
               
               Conread position:44-166
               
               
               Cow position:chr18:37187989-37187867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr18:39662787-39662908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:44-178
               
               
               Cow position:chr18:11657665-11657798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:44-209
               
               
               Cow position:chr18:44514094-44514257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):68, 132

               
               
               Conread position:44-213
               
               
               Cow position:chr18:21751386-21751563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):136, 74

               
               
               Conread position:44-222
               
               
               Cow position:chr18:27637500-27637683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:44-229
               
               
               Cow position:chr18:238108-237926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:44-234
               
               
               Cow position:chr18:12273666-12273853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):135, 81

               
               
               Conread position:45-166
               
               
               Cow position:chr18:39623809-39623931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:45-224
               
               
               Cow position:chr18:21528656-21528842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:46-166
               
               
               Cow position:chr18:39710117-39710238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:94
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:46-206
               
               
               Cow position:chr18:32002-32166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:46-206
               
               
               Cow position:chr18:52387210-52387043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):134, 96

               
               
               Conread position:46-213
               
               
               Cow position:chr18:45573390-45573563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:46-214
               
               
               Cow position:chr18:6818654-6818483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 60

               
               
               Conread position:46-219
               
               
               Cow position:chr18:27078874-27079055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:46-222
               
               
               Cow position:chr18:49970643-49970471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:47-222
               
               
               Cow position:chr18:35535135-35534960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):129, 84

               
               
               Conread position:48-212
               
               
               Cow position:chr18:42988295-42988124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:51-213
               
               
               Cow position:chr18:4907162-4907326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):129, 58

               
               
               Conread position:51-222
               
               
               Cow position:chr18:35171363-35171540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:51-245
               
               
               Cow position:chr18:37799992-37800193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 125

               
               
               Conread position:52-200
               
               
               Cow position:chr18:23810104-23809952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):128, 113

               
               
               Conread position:54-247
               
               
               Cow position:chr18:4857706-4857504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:56-212
               
               
               Cow position:chr18:38211176-38211340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:59-166
               
               
               Cow position:chr18:7487255-7487362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:108
               
               
               Alignm identity:86
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-173
               
               
               Cow position:chr19:27966161-27965989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-178
               
               
               Cow position:chr19:42517270-42517093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):13, 110

               
               
               Conread position:1-208
               
               
               Cow position:chr19:25382702-25382483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:1-210
               
               
               Cow position:chr19:55957583-55957366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):140, 20

               
               
               Conread position:1-211
               
               
               Cow position:chr19:23304503-23304293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):179, 121

               
               
               Conread position:1-211
               
               
               Cow position:chr19:34166356-34166564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):179, 30

               
               
               Conread position:1-213
               
               
               Cow position:chr19:38410851-38411075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr19:729757-729540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):175, 30

               
               
               Conread position:1-222
               
               
               Cow position:chr19:7148078-7147854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 180

               
               
               Conread position:2-179
               
               
               Cow position:chr19:21756920-21756742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:3-225
               
               
               Cow position:chr19:47859328-47859098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 89

               
               
               Conread position:4-174
               
               
               Cow position:chr19:35444517-35444347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-210
               
               
               Cow position:chr19:26754030-26754239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):68, 93

               
               
               Conread position:13-166
               
               
               Cow position:chr19:30227519-30227672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-211
               
               
               Cow position:chr19:3621430-3621631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):150, 67

               
               
               Conread position:14-214
               
               
               Cow position:chr19:34758002-34757782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:16-221
               
               
               Cow position:chr19:12698321-12698529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):148, 102

               
               
               Conread position:20-212
               
               
               Cow position:chr19:33988076-33988262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):92, 39

               
               
               Conread position:20-225
               
               
               Cow position:chr19:1900723-1900508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):110, 33

               
               
               Conread position:21-169
               
               
               Cow position:chr19:52568468-52568317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:21-209
               
               
               Cow position:chr19:2221068-2220874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):81, 77

               
               
               Conread position:21-209
               
               
               Cow position:chr19:12945299-12945104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):155, 133

               
               
               Conread position:21-213
               
               
               Cow position:chr19:36845257-36845448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):137, 160

               
               
               Conread position:21-213
               
               
               Cow position:chr19:41718957-41718758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 85

               
               
               Conread position:37-158
               
               
               Cow position:chr19:34819163-34819044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:37-166
               
               
               Cow position:chr19:7558568-7558695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr19:29139225-29139362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-207
               
               
               Cow position:chr19:5912937-5912758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:37-208
               
               
               Cow position:chr19:20622677-20622845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:37-210
               
               
               Cow position:chr19:17354881-17355059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):125, 62

               
               
               Conread position:37-224
               
               
               Cow position:chr19:12761080-12760893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-209
               
               
               Cow position:chr19:17259931-17260111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:38-209
               
               
               Cow position:chr19:38732163-38732338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):138, 85

               
               
               Conread position:38-213
               
               
               Cow position:chr19:40127142-40126972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:38-214
               
               
               Cow position:chr19:27968672-27968491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):138, 112

               
               
               Conread position:38-222
               
               
               Cow position:chr19:14588429-14588613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-246
               
               
               Cow position:chr19:30007216-30007415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:39-173
               
               
               Cow position:chr19:51637065-51637201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:39-174
               
               
               Cow position:chr19:36978292-36978428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 74

               
               
               Conread position:39-213
               
               
               Cow position:chr19:6854943-6855110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr19:21816993-21817123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-206
               
               
               Cow position:chr19:12747746-12747579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr19:8864771-8864936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr19:24068254-24068078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):136, 163

               
               
               Conread position:44-215
               
               
               Cow position:chr19:4537234-4537060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):136, 122

               
               
               Conread position:45-174
               
               
               Cow position:chr19:51294255-51294128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:46-166
               
               
               Cow position:chr19:43431295-43431173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:46-173
               
               
               Cow position:chr19:42868047-42868174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-207
               
               
               Cow position:chr19:19738032-19738201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:46-209
               
               
               Cow position:chr19:8185235-8185404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):120, 76

               
               
               Conread position:46-224
               
               
               Cow position:chr19:42776464-42776636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:46-230
               
               
               Cow position:chr19:23416851-23416666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-22
               
               
               Alignm gaps (pig, cow):150, 180

               
               
               Conread position:47-248
               
               
               Cow position:chr19:22871222-22871016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-23
               
               
               Alignm gaps (pig, cow):129, 75

               
               
               Conread position:52-222
               
               
               Cow position:chr19:42217278-42217099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):59, 92

               
               
               Conread position:204-475
               
               
               Cow position:chr19:52151770-52151493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:189
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):111, 40

               
               
               Conread position:1-173
               
               
               Cow position:chr2:49862651-49862824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 91

               
               
               Conread position:1-174
               
               
               Cow position:chr2:10628538-10628363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr2:16669465-16669639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 97

               
               
               Conread position:1-174
               
               
               Cow position:chr2:47047757-47047585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 23

               
               
               Conread position:1-178
               
               
               Cow position:chr2:47065106-47065285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:1-210
               
               
               Cow position:chr2:80848080-80848285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:1-213
               
               
               Cow position:chr2:19494211-19494420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 124

               
               
               Conread position:1-213
               
               
               Cow position:chr2:46316869-46317079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):203, 180

               
               
               Conread position:1-215
               
               
               Cow position:chr2:12682665-12682450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):31, 195

               
               
               Conread position:1-220
               
               
               Cow position:chr2:7194208-7194425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):197, 31

               
               
               Conread position:1-221
               
               
               Cow position:chr2:14826273-14826495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-222
               
               
               Cow position:chr2:16847181-16847398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:1-222
               
               
               Cow position:chr2:72315815-72315599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 95

               
               
               Conread position:2-174
               
               
               Cow position:chr2:41248569-41248734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 106

               
               
               Conread position:2-215
               
               
               Cow position:chr2:46120642-46120437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):202, 120

               
               
               Conread position:2-222
               
               
               Cow position:chr2:58074346-58074133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 66

               
               
               Conread position:6-197
               
               
               Cow position:chr2:81493595-81493408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:6-218
               
               
               Cow position:chr2:16667939-16668155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 83

               
               
               Conread position:8-178
               
               
               Cow position:chr2:15059056-15058889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr2:50565940-50566110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-208
               
               
               Cow position:chr2:32048486-32048690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:8-209
               
               
               Cow position:chr2:5113852-5114058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):158, 13

               
               
               Conread position:8-209
               
               
               Cow position:chr2:48837282-48837078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):163, 98

               
               
               Conread position:8-210
               
               
               Cow position:chr2:48525536-48525330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-212
               
               
               Cow position:chr2:15219119-15219324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):112, 162

               
               
               Conread position:8-225
               
               
               Cow position:chr2:46033341-46033555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):162, 110

               
               
               Conread position:9-208
               
               
               Cow position:chr2:23301739-23301939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):113, 12

               
               
               Conread position:12-220
               
               
               Cow position:chr2:43131105-43131313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):90, 84

               
               
               Conread position:13-158
               
               
               Cow position:chr2:39363013-39363162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:13-174
               
               
               Cow position:chr2:29394998-29394837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-174
               
               
               Cow position:chr2:49717077-49716917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:13-197
               
               
               Cow position:chr2:64465767-64465580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 111

               
               
               Conread position:13-206
               
               
               Cow position:chr2:44063765-44063569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):153, 85

               
               
               Conread position:13-225
               
               
               Cow position:chr2:56350906-56350695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):123, 164

               
               
               Conread position:14-222
               
               
               Cow position:chr2:18997731-18997929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:15-213
               
               
               Cow position:chr2:19842801-19842992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):190, 95

               
               
               Conread position:20-256
               
               
               Cow position:chr2:66959693-66959924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):117, 98

               
               
               Conread position:21-166
               
               
               Cow position:chr2:6039032-6039176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:21-193
               
               
               Cow position:chr2:41439304-41439131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:21-206
               
               
               Cow position:chr2:49467648-49467838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:21-209
               
               
               Cow position:chr2:67302037-67302230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):159, 50

               
               
               Conread position:21-212
               
               
               Cow position:chr2:76762235-76762431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:21-215
               
               
               Cow position:chr2:66562022-66561819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:21-222
               
               
               Cow position:chr2:56937699-56937901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):145, 98

               
               
               Conread position:21-224
               
               
               Cow position:chr2:24722252-24722051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):147, 0

               
               
               Conread position:21-225
               
               
               Cow position:chr2:33251070-33250871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:22-214
               
               
               Cow position:chr2:36963542-36963738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 85

               
               
               Conread position:37-166
               
               
               Cow position:chr2:39483518-39483647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-204
               
               
               Cow position:chr2:5300631-5300804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:133
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):129, 68

               
               
               Conread position:37-213
               
               
               Cow position:chr2:78379384-78379216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):79, 85

               
               
               Conread position:37-220
               
               
               Cow position:chr2:39642785-39642970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):74, 126

               
               
               Conread position:37-220
               
               
               Cow position:chr2:67595985-67595802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-222
               
               
               Cow position:chr2:30954562-30954378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):90, 142

               
               
               Conread position:37-222
               
               
               Cow position:chr2:36124468-36124648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):168, 36

               
               
               Conread position:37-222
               
               
               Cow position:chr2:59992217-59992035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:37-225
               
               
               Cow position:chr2:36117284-36117471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 115

               
               
               Conread position:37-225
               
               
               Cow position:chr2:49428416-49428601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):71, 41

               
               
               Conread position:38-156
               
               
               Cow position:chr2:5815983-5815865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr2:52466416-52466280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr2:65932001-65932137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):126, 101

               
               
               Conread position:38-174
               
               
               Cow position:chr2:78116327-78116191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-178
               
               
               Cow position:chr2:37891455-37891310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:38-208
               
               
               Cow position:chr2:75227239-75227404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:38-210
               
               
               Cow position:chr2:44197910-44198082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):56, 140

               
               
               Conread position:38-210
               
               
               Cow position:chr2:44313683-44313503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:38-211
               
               
               Cow position:chr2:64562903-64562734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:38-211
               
               
               Cow position:chr2:68328817-68328637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):128, 87

               
               
               Conread position:38-213
               
               
               Cow position:chr2:59397017-59396846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:38-222
               
               
               Cow position:chr2:18236206-18236023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):128, 136

               
               
               Conread position:39-171
               
               
               Cow position:chr2:49345029-49345162 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:39-175
               
               
               Cow position:chr2:81243948-81244084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-181
               
               
               Cow position:chr2:62200793-62200934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:39-200
               
               
               Cow position:chr2:54052197-54052031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:39-201
               
               
               Cow position:chr2:8083633-8083802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr2:74070369-74070543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):127, 86

               
               
               Conread position:39-214
               
               
               Cow position:chr2:32264355-32264175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):127, 67

               
               
               Conread position:39-220
               
               
               Cow position:chr2:45642451-45642273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):30, 87

               
               
               Conread position:39-222
               
               
               Cow position:chr2:29343370-29343177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:39-229
               
               
               Cow position:chr2:13369691-13369889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr2:69579637-69579507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-184
               
               
               Cow position:chr2:46014808-46014948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-196
               
               
               Cow position:chr2:46968150-46967999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):131, 81

               
               
               Conread position:44-201
               
               
               Cow position:chr2:42476188-42476030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):123, 8

               
               
               Conread position:44-206
               
               
               Cow position:chr2:28726505-28726671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):15, 74

               
               
               Conread position:44-207
               
               
               Cow position:chr2:56837614-56837447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr2:9476392-9476228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 81

               
               
               Conread position:44-210
               
               
               Cow position:chr2:19320041-19320213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr2:21950017-21950183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):131, 78

               
               
               Conread position:44-213
               
               
               Cow position:chr2:42897707-42897884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr2:69199278-69199109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 52

               
               
               Conread position:44-224
               
               
               Cow position:chr2:32660219-32660397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:44-225
               
               
               Cow position:chr2:52484918-52484737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):126, 66

               
               
               Conread position:45-148
               
               
               Cow position:chr2:56846790-56846893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:84
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-198
               
               
               Cow position:chr2:80235313-80235158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:45-209
               
               
               Cow position:chr2:43139614-43139454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):75, 81

               
               
               Conread position:46-174
               
               
               Cow position:chr2:41459136-41459266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:46-178
               
               
               Cow position:chr2:12139504-12139371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:46-193
               
               
               Cow position:chr2:64473309-64473160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):65, 98

               
               
               Conread position:46-202
               
               
               Cow position:chr2:61480632-61480785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:46-203
               
               
               Cow position:chr2:9062721-9062875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:46-209
               
               
               Cow position:chr2:9936612-9936443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:46-209
               
               
               Cow position:chr2:46204560-46204721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):148, 126

               
               
               Conread position:46-213
               
               
               Cow position:chr2:27599455-27599286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):120, 64

               
               
               Conread position:46-214
               
               
               Cow position:chr2:19017495-19017672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:46-220
               
               
               Cow position:chr2:65554760-65554590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:46-222
               
               
               Cow position:chr2:14218695-14218882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:47-197
               
               
               Cow position:chr2:43994981-43995130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):133, 78

               
               
               Conread position:47-205
               
               
               Cow position:chr2:1422393-1422549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:51-213
               
               
               Cow position:chr2:68998367-68998525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:52-222
               
               
               Cow position:chr2:29121932-29122098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:54-214
               
               
               Cow position:chr2:36575787-36575945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):126, 61

               
               
               Conread position:204-472
               
               
               Cow position:chr2:3325061-3324787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-36
               
               
               Alignm gaps (pig, cow):145, 29

               
               
               Conread position:1-158
               
               
               Cow position:chr20:11008209-11008368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr20:14433383-14433209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):10, 112

               
               
               Conread position:1-174
               
               
               Cow position:chr20:39417860-39417691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:1-205
               
               
               Cow position:chr20:5814606-5814815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:1-213
               
               
               Cow position:chr20:14282959-14283170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):27, 176

               
               
               Conread position:2-215
               
               
               Cow position:chr20:15529901-15530119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):14, 52

               
               
               Conread position:2-222
               
               
               Cow position:chr20:11359591-11359373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:3-209
               
               
               Cow position:chr20:25953305-25953521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 106

               
               
               Conread position:7-166
               
               
               Cow position:chr20:23590702-23590543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-166
               
               
               Cow position:chr20:24711887-24712047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:7-218
               
               
               Cow position:chr20:34083762-34083984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 123

               
               
               Conread position:8-160
               
               
               Cow position:chr20:22959299-22959148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr20:10200394-10200560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-220
               
               
               Cow position:chr20:5950595-5950374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):91, 99

               
               
               Conread position:8-225
               
               
               Cow position:chr20:28249228-28249455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:13-210
               
               
               Cow position:chr20:29990394-29990194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):167, 41

               
               
               Conread position:14-208
               
               
               Cow position:chr20:12581900-12581709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 88

               
               
               Conread position:20-174
               
               
               Cow position:chr20:3141634-3141787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:21-173
               
               
               Cow position:chr20:6054448-6054297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:21-173
               
               
               Cow position:chr20:16291749-16291901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 19

               
               
               Conread position:21-213
               
               
               Cow position:chr20:17251778-17251966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:37-168
               
               
               Cow position:chr20:30639706-30639572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:37-191
               
               
               Cow position:chr20:5703548-5703703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:37-201
               
               
               Cow position:chr20:25474630-25474797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):88, 59

               
               
               Conread position:38-170
               
               
               Cow position:chr20:39269007-39268876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr20:354823-354687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-178
               
               
               Cow position:chr20:1824550-1824416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:38-178
               
               
               Cow position:chr20:17544702-17544842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-213
               
               
               Cow position:chr20:5365004-5365175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:38-215
               
               
               Cow position:chr20:37357934-37358112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):142, 164

               
               
               Conread position:38-222
               
               
               Cow position:chr20:27315056-27315233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):167, 72

               
               
               Conread position:39-158
               
               
               Cow position:chr20:20202298-20202415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:39-210
               
               
               Cow position:chr20:14755761-14755588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):127, 86

               
               
               Conread position:39-216
               
               
               Cow position:chr20:11002480-11002667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:44-201
               
               
               Cow position:chr20:8442371-8442208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):106, 74

               
               
               Conread position:44-211
               
               
               Cow position:chr20:2798907-2798739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):136, 65

               
               
               Conread position:44-214
               
               
               Cow position:chr20:39016788-39016621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:44-222
               
               
               Cow position:chr20:297924-297748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):65, 143

               
               
               Conread position:44-222
               
               
               Cow position:chr20:34097869-34097689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:45-213
               
               
               Cow position:chr20:14490331-14490500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 75

               
               
               Conread position:46-208
               
               
               Cow position:chr20:19201617-19201786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):134, 161

               
               
               Conread position:46-214
               
               
               Cow position:chr20:34271413-34271578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:119
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:46-221
               
               
               Cow position:chr20:21344553-21344725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:47-179
               
               
               Cow position:chr20:17606880-17606748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-214
               
               
               Cow position:chr20:13829347-13829519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):82, 63

               
               
               Conread position:51-165
               
               
               Cow position:chr20:13876620-13876506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:89
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-229
               
               
               Cow position:chr20:17733468-17733285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:53-174
               
               
               Cow position:chr20:6473826-6473946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:54-209
               
               
               Cow position:chr20:4945160-4944995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr21:44251783-44251608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr21:41621185-41621391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):10, 169

               
               
               Conread position:1-209
               
               
               Cow position:chr21:40475559-40475765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):16, 175

               
               
               Conread position:1-212
               
               
               Cow position:chr21:14452294-14452511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr21:32339680-32339471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):31, 127

               
               
               Conread position:1-222
               
               
               Cow position:chr21:33779-34015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):31, 214

               
               
               Conread position:1-224
               
               
               Cow position:chr21:34654134-34654348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):15, 131

               
               
               Conread position:1-239
               
               
               Cow position:chr21:26018439-26018679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:1-241
               
               
               Cow position:chr21:18059901-18059661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 77

               
               
               Conread position:1-242
               
               
               Cow position:chr21:8431040-8430798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 176

               
               
               Conread position:2-178
               
               
               Cow position:chr21:48637695-48637519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:2-222
               
               
               Cow position:chr21:47101-47337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:6-159
               
               
               Cow position:chr21:42017536-42017382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr21:23535778-23535945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr21:43316826-43316660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-208
               
               
               Cow position:chr21:20153025-20153220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):103, 84

               
               
               Conread position:8-210
               
               
               Cow position:chr21:13580482-13580691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):158, 98

               
               
               Conread position:8-215
               
               
               Cow position:chr21:6834118-6834333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):172, 103

               
               
               Conread position:12-181
               
               
               Cow position:chr21:12640543-12640711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:12-201
               
               
               Cow position:chr21:15305226-15305028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:13-139
               
               
               Cow position:chr21:10538181-10538055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:95
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-208
               
               
               Cow position:chr21:4108849-4109050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):89, 84

               
               
               Conread position:18-214
               
               
               Cow position:chr21:16796930-16797131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):93, 187

               
               
               Conread position:21-208
               
               
               Cow position:chr21:11006689-11006505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):59, 85

               
               
               Conread position:21-213
               
               
               Cow position:chr21:9416332-9416519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):26, 87

               
               
               Conread position:21-218
               
               
               Cow position:chr21:20160758-20160959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:21-220
               
               
               Cow position:chr21:42501132-42501327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:21-242
               
               
               Cow position:chr21:12348847-12349066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):201, 155

               
               
               Conread position:34-173
               
               
               Cow position:chr21:15271342-15271206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:36-239
               
               
               Cow position:chr21:6153897-6154097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:37-170
               
               
               Cow position:chr21:41041042-41041176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):87, 72

               
               
               Conread position:37-174
               
               
               Cow position:chr21:2537041-2536904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-212
               
               
               Cow position:chr21:6291844-6292026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):143, 166

               
               
               Conread position:37-213
               
               
               Cow position:chr21:16152539-16152713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):140, 88

               
               
               Conread position:37-220
               
               
               Cow position:chr21:27744123-27744305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):94, 73

               
               
               Conread position:38-174
               
               
               Cow position:chr21:10264132-10264267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr21:18568540-18568405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr21:37706316-37706180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-206
               
               
               Cow position:chr21:42905299-42905130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-35
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:38-210
               
               
               Cow position:chr21:29418667-29418838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):156, 130

               
               
               Conread position:38-222
               
               
               Cow position:chr21:16498615-16498792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:39-179
               
               
               Cow position:chr21:8545923-8545783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr21:13656536-13656354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):141, 49

               
               
               Conread position:39-213
               
               
               Cow position:chr21:17403750-17403567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr21:23980082-23979900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr21:42047942-42047761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:39-214
               
               
               Cow position:chr21:36695990-36695809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr21:11353165-11353295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr21:27521234-27521109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:44-177
               
               
               Cow position:chr21:48205116-48204983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-178
               
               
               Cow position:chr21:17193646-17193512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):15, 56

               
               
               Conread position:44-178
               
               
               Cow position:chr21:46809661-46809528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:44-208
               
               
               Cow position:chr21:24296663-24296491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):32, 50

               
               
               Conread position:44-208
               
               
               Cow position:chr21:28882286-28882446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr21:3135764-3135591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:44-212
               
               
               Cow position:chr21:13134705-13134875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:45-174
               
               
               Cow position:chr21:7424908-7424781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:45-209
               
               
               Cow position:chr21:10660788-10660616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):7, 63

               
               
               Conread position:45-213
               
               
               Cow position:chr21:10978843-10978679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:45-249
               
               
               Cow position:chr21:18449858-18450061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):176, 127

               
               
               Conread position:46-210
               
               
               Cow position:chr21:9477270-9477441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 79

               
               
               Conread position:46-212
               
               
               Cow position:chr21:1464450-1464624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-21
               
               
               Alignm gaps (pig, cow):65, 81

               
               
               Conread position:46-213
               
               
               Cow position:chr21:27677587-27677763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:47-210
               
               
               Cow position:chr21:36508342-36508501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:48-220
               
               
               Cow position:chr21:10004777-10004608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:51-213
               
               
               Cow position:chr21:31652496-31652666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:51-241
               
               
               Cow position:chr21:41155982-41156167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:71-228
               
               
               Cow position:chr21:40821763-40821603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):95, 133

               
               
               Conread position:218-476
               
               
               Cow position:chr21:2510802-2511066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):128, 11

               
               
               Conread position:1-166
               
               
               Cow position:chr22:2643923-2644090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:1-170
               
               
               Cow position:chr22:5595816-5595647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 46

               
               
               Conread position:1-174
               
               
               Cow position:chr22:16235512-16235336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-177
               
               
               Cow position:chr22:43131565-43131386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:1-195
               
               
               Cow position:chr22:28146669-28146871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-197
               
               
               Cow position:chr22:41982725-41982527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):179, 31

               
               
               Conread position:1-207
               
               
               Cow position:chr22:6176292-6176076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr22:12157851-12157649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:1-209
               
               
               Cow position:chr22:35215541-35215759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr22:7497117-7496895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr22:15950390-15950178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):182, 31

               
               
               Conread position:1-216
               
               
               Cow position:chr22:1065098-1065321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):32, 207

               
               
               Conread position:1-222
               
               
               Cow position:chr22:1659157-1659386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):29, 208

               
               
               Conread position:1-224
               
               
               Cow position:chr22:36432977-36432762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-242
               
               
               Cow position:chr22:14487928-14488170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):16, 176

               
               
               Conread position:2-208
               
               
               Cow position:chr22:24134329-24134127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:2-213
               
               
               Cow position:chr22:6754273-6754052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 208

               
               
               Conread position:3-173
               
               
               Cow position:chr22:9347051-9346883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):11, 40

               
               
               Conread position:5-174
               
               
               Cow position:chr22:22860912-22860746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-139
               
               
               Cow position:chr22:16044414-16044283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):26, 20

               
               
               Conread position:8-178
               
               
               Cow position:chr22:14378690-14378523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):103, 24

               
               
               Conread position:8-210
               
               
               Cow position:chr22:1714863-1714664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):173, 0

               
               
               Conread position:8-215
               
               
               Cow position:chr22:16541650-16541446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:9-179
               
               
               Cow position:chr22:18933713-18933541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:10-198
               
               
               Cow position:chr22:32514297-32514483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):92, 86

               
               
               Conread position:13-174
               
               
               Cow position:chr22:6289496-6289334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):87, 101

               
               
               Conread position:14-166
               
               
               Cow position:chr22:22433050-22433203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:14-218
               
               
               Cow position:chr22:13957636-13957429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):157, 108

               
               
               Conread position:18-213
               
               
               Cow position:chr22:43965710-43965915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:20-166
               
               
               Cow position:chr22:14676699-14676845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr22:2704313-2704464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:21-209
               
               
               Cow position:chr22:3250979-3250783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:21-219
               
               
               Cow position:chr22:33373254-33373462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):90, 30

               
               
               Conread position:22-206
               
               
               Cow position:chr22:9735285-9735474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):152, 109

               
               
               Conread position:22-213
               
               
               Cow position:chr22:39602298-39602497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:23-174
               
               
               Cow position:chr22:27907862-27907711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:30-213
               
               
               Cow position:chr22:12637624-12637813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):136, 94

               
               
               Conread position:37-160
               
               
               Cow position:chr22:25312540-25312663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-173
               
               
               Cow position:chr22:12389130-12389266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr22:1074295-1074432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr22:8331029-8331166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-209
               
               
               Cow position:chr22:18926387-18926564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:37-209
               
               
               Cow position:chr22:27401768-27401941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 87

               
               
               Conread position:37-213
               
               
               Cow position:chr22:15490685-15490867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):143, 93

               
               
               Conread position:37-220
               
               
               Cow position:chr22:27275493-27275676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-222
               
               
               Cow position:chr22:33448050-33447868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:37-225
               
               
               Cow position:chr22:30176748-30176936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-247
               
               
               Cow position:chr22:43131113-43130903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-208
               
               
               Cow position:chr22:1776091-1776270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:38-209
               
               
               Cow position:chr22:32698792-32698961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):163, 137

               
               
               Conread position:38-222
               
               
               Cow position:chr22:1046160-1045970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:38-222
               
               
               Cow position:chr22:9372553-9372744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:38-227
               
               
               Cow position:chr22:32892725-32892922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:39-178
               
               
               Cow position:chr22:8418494-8418633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-209
               
               
               Cow position:chr22:12854072-12853903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):149, 66

               
               
               Conread position:39-213
               
               
               Cow position:chr22:530545-530371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):141, 83

               
               
               Conread position:39-225
               
               
               Cow position:chr22:12902822-12902644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:39-258
               
               
               Cow position:chr22:21601493-21601277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):188, 29

               
               
               Conread position:40-213
               
               
               Cow position:chr22:11697161-11696983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr22:15025072-15024952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:44-168
               
               
               Cow position:chr22:11497532-11497655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:98
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:44-209
               
               
               Cow position:chr22:30606894-30607056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr22:35627386-35627548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr22:1309696-1309526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):133, 80

               
               
               Conread position:44-213
               
               
               Cow position:chr22:27681759-27681937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-214
               
               
               Cow position:chr22:11790021-11790200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-216
               
               
               Cow position:chr22:23209602-23209783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:44-223
               
               
               Cow position:chr22:15737272-15737456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):54, 63

               
               
               Conread position:44-224
               
               
               Cow position:chr22:39472119-39471938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):136, 32

               
               
               Conread position:44-225
               
               
               Cow position:chr22:1106105-1106286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-238
               
               
               Cow position:chr22:47820476-47820676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):136, 62

               
               
               Conread position:45-209
               
               
               Cow position:chr22:11767011-11766851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):65, 82

               
               
               Conread position:45-210
               
               
               Cow position:chr22:6149352-6149190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:45-212
               
               
               Cow position:chr22:39446330-39446505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:45-228
               
               
               Cow position:chr22:1326458-1326645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):131, 51

               
               
               Conread position:46-174
               
               
               Cow position:chr22:35578737-35578611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:46-209
               
               
               Cow position:chr22:9075447-9075619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:47-214
               
               
               Cow position:chr22:24890262-24890423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):158, 78

               
               
               Conread position:48-212
               
               
               Cow position:chr22:16533116-16533285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):123, 50

               
               
               Conread position:54-174
               
               
               Cow position:chr22:18441129-18441249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:55-214
               
               
               Cow position:chr22:11601081-11601249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:60-225
               
               
               Cow position:chr22:9983774-9983613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:180-472
               
               
               Cow position:chr22:3278411-3278118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):157, 19

               
               
               Conread position:1-210
               
               
               Cow position:chr23:6244597-6244398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):27, 40

               
               
               Conread position:1-210
               
               
               Cow position:chr23:27848995-27849206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 111

               
               
               Conread position:1-212
               
               
               Cow position:chr23:16582911-16582699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):26, 196

               
               
               Conread position:1-215
               
               
               Cow position:chr23:11081255-11081477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 55

               
               
               Conread position:1-220
               
               
               Cow position:chr23:5426432-5426652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):27, 174

               
               
               Conread position:1-221
               
               
               Cow position:chr23:8698419-8698639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):15, 178

               
               
               Conread position:1-222
               
               
               Cow position:chr23:187177-187398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):30, 132

               
               
               Conread position:1-224
               
               
               Cow position:chr23:26986272-26986043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):16, 58

               
               
               Conread position:1-225
               
               
               Cow position:chr23:32621282-32621508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):30, 189

               
               
               Conread position:2-166
               
               
               Cow position:chr23:3204778-3204948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:2-210
               
               
               Cow position:chr23:39267784-39267992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):12, 120

               
               
               Conread position:7-139
               
               
               Cow position:chr23:13674027-13673893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-208
               
               
               Cow position:chr23:9226290-9226476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:12-208
               
               
               Cow position:chr23:29330319-29330523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:13-173
               
               
               Cow position:chr23:5436990-5436831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:13-212
               
               
               Cow position:chr23:16647335-16647535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:13-244
               
               
               Cow position:chr23:5436630-5436398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):167, 189

               
               
               Conread position:14-210
               
               
               Cow position:chr23:17597440-17597631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):162, 108

               
               
               Conread position:21-174
               
               
               Cow position:chr23:40501077-40500926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):71, 106

               
               
               Conread position:21-209
               
               
               Cow position:chr23:22238801-22238606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:21-210
               
               
               Cow position:chr23:4003667-4003863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):145, 186

               
               
               Conread position:21-213
               
               
               Cow position:chr23:4979261-4979076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:21-221
               
               
               Cow position:chr23:3234761-3234560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):87, 160

               
               
               Conread position:22-213
               
               
               Cow position:chr23:33232680-33232482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):140, 76

               
               
               Conread position:22-244
               
               
               Cow position:chr23:19565472-19565694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):138, 34

               
               
               Conread position:23-177
               
               
               Cow position:chr23:4343504-4343658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:24-213
               
               
               Cow position:chr23:27414068-27413879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):176, 82

               
               
               Conread position:24-222
               
               
               Cow position:chr23:28574729-28574924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:27-222
               
               
               Cow position:chr23:35527106-35527309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:36-243
               
               
               Cow position:chr23:28580551-28580341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:143
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr23:9726505-9726368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr23:20557808-20557625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-26
               
               
               Alignm gaps (pig, cow):125, 166

               
               
               Conread position:37-213
               
               
               Cow position:chr23:35239388-35239568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):139, 17

               
               
               Conread position:37-215
               
               
               Cow position:chr23:17462626-17462812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:37-222
               
               
               Cow position:chr23:18739428-18739245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):12, 139

               
               
               Conread position:37-236
               
               
               Cow position:chr23:164796-164995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):121, 144

               
               
               Conread position:38-174
               
               
               Cow position:chr23:1701209-1701345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-213
               
               
               Cow position:chr23:1480677-1480849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):124, 132

               
               
               Conread position:38-215
               
               
               Cow position:chr23:35718349-35718530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):136, 58

               
               
               Conread position:38-221
               
               
               Cow position:chr23:12363580-12363405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:38-221
               
               
               Cow position:chr23:22530401-22530223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:38-222
               
               
               Cow position:chr23:534265-534442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:38-236
               
               
               Cow position:chr23:7709828-7710012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):182, 68

               
               
               Conread position:39-173
               
               
               Cow position:chr23:4972805-4972938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:39-174
               
               
               Cow position:chr23:32479979-32479846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:39-209
               
               
               Cow position:chr23:36306607-36306782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:39-210
               
               
               Cow position:chr23:1798149-1798323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:39-210
               
               
               Cow position:chr23:37207194-37207018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:44-144
               
               
               Cow position:chr23:38118001-38118101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr23:306566-306688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-173
               
               
               Cow position:chr23:32126349-32126475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:44-178
               
               
               Cow position:chr23:13410712-13410585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:44-207
               
               
               Cow position:chr23:6179502-6179336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):55, 65

               
               
               Conread position:44-210
               
               
               Cow position:chr23:10853089-10853254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:44-211
               
               
               Cow position:chr23:13380753-13380918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:44-222
               
               
               Cow position:chr23:4291398-4291573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:44-239
               
               
               Cow position:chr23:307499-307695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):176, 0

               
               
               Conread position:45-222
               
               
               Cow position:chr23:10675896-10676073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-178
               
               
               Cow position:chr23:40672933-40672801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:98
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-205
               
               
               Cow position:chr23:21664350-21664506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):135, 75

               
               
               Conread position:51-210
               
               
               Cow position:chr23:799618-799462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:51-213
               
               
               Cow position:chr23:3270349-3270518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:56-209
               
               
               Cow position:chr23:7471604-7471758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):119, 75

               
               
               Conread position:57-210
               
               
               Cow position:chr23:3890518-3890357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:122
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):40, 56

               
               
               Conread position:1-187
               
               
               Cow position:chr24:28990533-28990719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):15, 99

               
               
               Conread position:1-209
               
               
               Cow position:chr24:14550767-14550976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):34, 119

               
               
               Conread position:1-209
               
               
               Cow position:chr24:16645348-16645142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):31, 124

               
               
               Conread position:1-210
               
               
               Cow position:chr24:32191030-32191235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:4-178
               
               
               Cow position:chr24:9300602-9300778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr24:32891063-32890903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:8-207
               
               
               Cow position:chr24:34272790-34273004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:8-224
               
               
               Cow position:chr24:6102811-6103028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):126, 34

               
               
               Conread position:13-148
               
               
               Cow position:chr24:34008587-34008452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-158
               
               
               Cow position:chr24:11028703-11028559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:13-210
               
               
               Cow position:chr24:17689625-17689429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):186, 0

               
               
               Conread position:13-213
               
               
               Cow position:chr24:26880739-26880938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 34

               
               
               Conread position:14-222
               
               
               Cow position:chr24:17311230-17311033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):166, 17

               
               
               Conread position:14-234
               
               
               Cow position:chr24:3412670-3412884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):190, 92

               
               
               Conread position:15-174
               
               
               Cow position:chr24:29586988-29587144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr24:11736076-11735926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr24:29677922-29677766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:21-178
               
               
               Cow position:chr24:352612-352456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:21-210
               
               
               Cow position:chr24:40025383-40025192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):149, 65

               
               
               Conread position:21-214
               
               
               Cow position:chr24:161997-162195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:21-222
               
               
               Cow position:chr24:2992886-2992692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:23-221
               
               
               Cow position:chr24:10242787-10242586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:36-177
               
               
               Cow position:chr24:22419969-22420110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-212
               
               
               Cow position:chr24:5152533-5152711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:37-226
               
               
               Cow position:chr24:39911023-39910838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:37-258
               
               
               Cow position:chr24:11840197-11840409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):189, 61

               
               
               Conread position:38-221
               
               
               Cow position:chr24:40055500-40055318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:39-178
               
               
               Cow position:chr24:18755769-18755908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-209
               
               
               Cow position:chr24:30235882-30236058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):141, 71

               
               
               Conread position:39-211
               
               
               Cow position:chr24:17832809-17832640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr24:24692833-24693016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:39-215
               
               
               Cow position:chr24:250526-250340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):60, 68

               
               
               Conread position:42-203
               
               
               Cow position:chr24:3193260-3193101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):8, 114

               
               
               Conread position:44-174
               
               
               Cow position:chr24:18874804-18874676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:44-178
               
               
               Cow position:chr24:22079479-22079611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:44-203
               
               
               Cow position:chr24:24540474-24540322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:44-208
               
               
               Cow position:chr24:39523432-39523275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:44-209
               
               
               Cow position:chr24:27066247-27066406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:44-214
               
               
               Cow position:chr24:20801329-20801153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):121, 75

               
               
               Conread position:44-233
               
               
               Cow position:chr24:25947845-25947659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:45-166
               
               
               Cow position:chr24:16640928-16641049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-222
               
               
               Cow position:chr24:22567120-22567298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:46-216
               
               
               Cow position:chr24:44987356-44987184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):134, 157

               
               
               Conread position:46-220
               
               
               Cow position:chr24:20017409-20017238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:46-221
               
               
               Cow position:chr24:3148217-3148046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):40, 100

               
               
               Conread position:47-174
               
               
               Cow position:chr24:25122361-25122481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:47-197
               
               
               Cow position:chr24:22129618-22129469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):135, 78

               
               
               Conread position:47-214
               
               
               Cow position:chr24:27284836-27285009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):50, 160

               
               
               Conread position:51-247
               
               
               Cow position:chr24:21656430-21656621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:61-174
               
               
               Cow position:chr24:124593-124706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:204-489
               
               
               Cow position:chr24:9188681-9188392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):137, 40

               
               
               Conread position:218-475
               
               
               Cow position:chr24:6025031-6024772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):128, 26

               
               
               Conread position:1-166
               
               
               Cow position:chr25:40904836-40904669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr25:26306210-26306037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):29, 108

               
               
               Conread position:1-207
               
               
               Cow position:chr25:4521843-4521633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):179, 31

               
               
               Conread position:2-242
               
               
               Cow position:chr25:18201931-18201690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):218, 30

               
               
               Conread position:3-178
               
               
               Cow position:chr25:17119740-17119914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):14, 19

               
               
               Conread position:7-222
               
               
               Cow position:chr25:26225027-26224825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr25:5846806-5846640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:8-208
               
               
               Cow position:chr25:5807948-5808156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:13-174
               
               
               Cow position:chr25:31514189-31514350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-247
               
               
               Cow position:chr25:15573397-15573625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):185, 111

               
               
               Conread position:20-155
               
               
               Cow position:chr25:33311311-33311176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-173
               
               
               Cow position:chr25:26061712-26061559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-223
               
               
               Cow position:chr25:433033-432826 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-32
               
               
               Alignm gaps (pig, cow):156, 184

               
               
               Conread position:21-209
               
               
               Cow position:chr25:7673317-7673513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:21-210
               
               
               Cow position:chr25:12305292-12305489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:21-216
               
               
               Cow position:chr25:23323506-23323708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:21-221
               
               
               Cow position:chr25:16921781-16921583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):77, 164

               
               
               Conread position:22-208
               
               
               Cow position:chr25:35052605-35052421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):154, 0

               
               
               Conread position:22-226
               
               
               Cow position:chr25:26679243-26679443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):183, 101

               
               
               Conread position:32-248
               
               
               Cow position:chr25:15999525-15999315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:37-205
               
               
               Cow position:chr25:35802631-35802458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:37-214
               
               
               Cow position:chr25:14164227-14164412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:37-222
               
               
               Cow position:chr25:26989229-26989414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):88, 177

               
               
               Conread position:37-255
               
               
               Cow position:chr25:33100607-33100827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-28
               
               
               Alignm gaps (pig, cow):139, 85

               
               
               Conread position:38-167
               
               
               Cow position:chr25:36369852-36369980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:38-167
               
               
               Cow position:chr25:36375543-36375671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:38-170
               
               
               Cow position:chr25:7380806-7380675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr25:11855516-11855381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:38-206
               
               
               Cow position:chr25:11543559-11543399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:38-209
               
               
               Cow position:chr25:4157213-4157038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):142, 87

               
               
               Conread position:38-213
               
               
               Cow position:chr25:17474480-17474311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:38-215
               
               
               Cow position:chr25:24115283-24115109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):167, 85

               
               
               Conread position:39-216
               
               
               Cow position:chr25:35384302-35384120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr25:9640998-9640876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:8e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-200
               
               
               Cow position:chr25:22768257-22768418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:44-215
               
               
               Cow position:chr25:17919013-17919186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 117

               
               
               Conread position:44-242
               
               
               Cow position:chr25:31657238-31657036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):136, 78

               
               
               Conread position:46-178
               
               
               Cow position:chr25:6061401-6061533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:99
               
               
               Alignm E-value:6e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-226
               
               
               Cow position:chr25:22373449-22373271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):113, 127

               
               
               Conread position:47-174
               
               
               Cow position:chr25:18568175-18568048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:47-178
               
               
               Cow position:chr25:22571000-22571129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:47-210
               
               
               Cow position:chr25:23519990-23519827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):118, 78

               
               
               Conread position:51-166
               
               
               Cow position:chr25:36535374-36535259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:91
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-213
               
               
               Cow position:chr25:33111373-33111215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):151, 45

               
               
               Conread position:51-221
               
               
               Cow position:chr25:7185230-7185064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:1-203
               
               
               Cow position:chr26:5406992-5407201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-211
               
               
               Cow position:chr26:7148292-7148071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr26:25526262-25526473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:1-222
               
               
               Cow position:chr26:34027022-34026801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:4-213
               
               
               Cow position:chr26:28243845-28244058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):9, 96

               
               
               Conread position:8-210
               
               
               Cow position:chr26:34060355-34060564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):154, 116

               
               
               Conread position:8-213
               
               
               Cow position:chr26:10764234-10764447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):172, 98

               
               
               Conread position:8-213
               
               
               Cow position:chr26:32670473-32670276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:13-217
               
               
               Cow position:chr26:32981447-32981235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:13-224
               
               
               Cow position:chr26:12028212-12028003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):16, 106

               
               
               Conread position:14-225
               
               
               Cow position:chr26:33038195-33037983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:20-222
               
               
               Cow position:chr26:28202725-28202525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):185, 152

               
               
               Conread position:21-147
               
               
               Cow position:chr26:829840-829966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-210
               
               
               Cow position:chr26:3192408-3192225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:22-174
               
               
               Cow position:chr26:8811508-8811659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:34-207
               
               
               Cow position:chr26:27768315-27768493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:37-205
               
               
               Cow position:chr26:16166644-16166470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:37-205
               
               
               Cow position:chr26:33175664-33175499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr26:31712017-31711844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:37-240
               
               
               Cow position:chr26:12807249-12807048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):129, 61

               
               
               Conread position:38-174
               
               
               Cow position:chr26:27482514-27482378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-208
               
               
               Cow position:chr26:24240731-24240906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):87, 148

               
               
               Conread position:38-222
               
               
               Cow position:chr26:20291640-20291463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:44-173
               
               
               Cow position:chr26:4807612-4807741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr26:31633786-31633916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:97
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-218
               
               
               Cow position:chr26:1041057-1041228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-247
               
               
               Cow position:chr26:33253258-33253060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):160, 78

               
               
               Conread position:45-215
               
               
               Cow position:chr26:2930200-2930031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):73, 137

               
               
               Conread position:46-210
               
               
               Cow position:chr26:25663492-25663320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:46-213
               
               
               Cow position:chr26:3930474-3930298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:48-179
               
               
               Cow position:chr26:5749876-5749751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:48-222
               
               
               Cow position:chr26:21320008-21320175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:51-197
               
               
               Cow position:chr26:28245107-28244964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):115, 71

               
               
               Conread position:52-197
               
               
               Cow position:chr26:23109095-23109237 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:62-469
               
               
               Cow position:chr26:9850059-9849628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:285
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):60, 201

               
               
               Conread position:62-469
               
               
               Cow position:chr26:9853569-9853139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:281
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):60, 201

               
               
               Conread position:1-146
               
               
               Cow position:chr27:29693438-29693291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:108
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:1-164
               
               
               Cow position:chr27:15825760-15825925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr27:13318014-13318189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr27:23452421-23452251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 125

               
               
               Conread position:1-174
               
               
               Cow position:chr27:27740331-27740505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):13, 72

               
               
               Conread position:1-211
               
               
               Cow position:chr27:5553429-5553214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:2-213
               
               
               Cow position:chr27:11435363-11435586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:2-222
               
               
               Cow position:chr27:29831738-29831971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:3-222
               
               
               Cow position:chr27:19933027-19932804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:7-174
               
               
               Cow position:chr27:28931848-28932014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):28, 113

               
               
               Conread position:8-166
               
               
               Cow position:chr27:19660883-19660724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:14-218
               
               
               Cow position:chr27:426914-426717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:20-159
               
               
               Cow position:chr27:24709496-24709357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-174
               
               
               Cow position:chr27:26909652-26909800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:20-230
               
               
               Cow position:chr27:24303886-24303666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr27:15865545-15865398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr27:16965517-16965363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):38, 123

               
               
               Conread position:21-208
               
               
               Cow position:chr27:27438568-27438762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):141, 28

               
               
               Conread position:21-210
               
               
               Cow position:chr27:18491494-18491313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:22-213
               
               
               Cow position:chr27:11561713-11561524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 76

               
               
               Conread position:34-214
               
               
               Cow position:chr27:10598914-10598725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):132, 72

               
               
               Conread position:37-173
               
               
               Cow position:chr27:232476-232340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr27:23148088-23147949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:37-197
               
               
               Cow position:chr27:9977605-9977443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):61, 86

               
               
               Conread position:37-209
               
               
               Cow position:chr27:17908337-17908513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 35

               
               
               Conread position:37-210
               
               
               Cow position:chr27:26118422-26118252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 136

               
               
               Conread position:37-210
               
               
               Cow position:chr27:27827928-27828112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:37-222
               
               
               Cow position:chr27:17995021-17995213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:38-166
               
               
               Cow position:chr27:18813618-18813748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr27:23060192-23060328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-178
               
               
               Cow position:chr27:22237045-22236906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:38-213
               
               
               Cow position:chr27:6550385-6550200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 160

               
               
               Conread position:38-213
               
               
               Cow position:chr27:15434246-15434073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 84

               
               
               Conread position:38-213
               
               
               Cow position:chr27:20514744-20514566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:38-214
               
               
               Cow position:chr27:8062429-8062600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:38-255
               
               
               Cow position:chr27:26111994-26112208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:39-173
               
               
               Cow position:chr27:10323761-10323633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:39-174
               
               
               Cow position:chr27:30914930-30914795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-210
               
               
               Cow position:chr27:2592462-2592280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:39-212
               
               
               Cow position:chr27:7412313-7412146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):155, 86

               
               
               Conread position:44-209
               
               
               Cow position:chr27:28015817-28015979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr27:30260977-30261146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-166
               
               
               Cow position:chr27:11208640-11208761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-170
               
               
               Cow position:chr27:26317980-26317855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:45-174
               
               
               Cow position:chr27:31157726-31157598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:45-209
               
               
               Cow position:chr27:11982732-11982892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:46-174
               
               
               Cow position:chr27:22583660-22583531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:46-222
               
               
               Cow position:chr27:19500320-19500505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:132
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:46-247
               
               
               Cow position:chr27:9504469-9504263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):121, 177

               
               
               Conread position:46-247
               
               
               Cow position:chr27:11480723-11480920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):91, 87

               
               
               Conread position:47-222
               
               
               Cow position:chr27:11133999-11133830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):158, 78

               
               
               Conread position:50-212
               
               
               Cow position:chr27:20045804-20045638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:51-210
               
               
               Cow position:chr27:18020256-18020414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):121, 80

               
               
               Conread position:53-222
               
               
               Cow position:chr27:28921986-28922152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:54-210
               
               
               Cow position:chr27:21054365-21054201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:54-215
               
               
               Cow position:chr27:27020192-27020356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:56-174
               
               
               Cow position:chr27:27012602-27012484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-194
               
               
               Cow position:chr28:7557733-7557534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr28:8259629-8259841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-208
               
               
               Cow position:chr28:19262586-19262380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):31, 177

               
               
               Conread position:1-209
               
               
               Cow position:chr28:5236603-5236390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):11, 183

               
               
               Conread position:1-213
               
               
               Cow position:chr28:13048282-13048065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-215
               
               
               Cow position:chr28:17739826-17740035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:1-224
               
               
               Cow position:chr28:3445480-3445258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:1-226
               
               
               Cow position:chr28:21868458-21868679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):27, 127

               
               
               Conread position:3-174
               
               
               Cow position:chr28:18608365-18608192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:8-173
               
               
               Cow position:chr28:27218333-27218497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:8-213
               
               
               Cow position:chr28:7644750-7644959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):54, 72

               
               
               Conread position:8-222
               
               
               Cow position:chr28:2077511-2077722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:8-222
               
               
               Cow position:chr28:10615936-10615723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):168, 114

               
               
               Conread position:13-213
               
               
               Cow position:chr28:8787555-8787748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):100, 53

               
               
               Conread position:14-212
               
               
               Cow position:chr28:8396351-8396545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):162, 108

               
               
               Conread position:14-213
               
               
               Cow position:chr28:4013100-4013292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:14-244
               
               
               Cow position:chr28:7350670-7350903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):166, 111

               
               
               Conread position:20-174
               
               
               Cow position:chr28:2821275-2821434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:20-220
               
               
               Cow position:chr28:32014806-32015004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:21-166
               
               
               Cow position:chr28:5630121-5630264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:21-215
               
               
               Cow position:chr28:3011246-3011056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):52, 27

               
               
               Conread position:21-216
               
               
               Cow position:chr28:4884233-4884030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):31, 108

               
               
               Conread position:22-174
               
               
               Cow position:chr28:2523967-2524118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):13, 9

               
               
               Conread position:30-173
               
               
               Cow position:chr28:6301113-6301256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:36-213
               
               
               Cow position:chr28:11307480-11307297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:36-213
               
               
               Cow position:chr28:16200705-16200520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:36-224
               
               
               Cow position:chr28:2819813-2819996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):130, 86

               
               
               Conread position:37-166
               
               
               Cow position:chr28:19118008-19118137 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr28:17680661-17680798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-208
               
               
               Cow position:chr28:3726170-3726004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):83, 93

               
               
               Conread position:37-208
               
               
               Cow position:chr28:4881201-4881034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 88

               
               
               Conread position:37-214
               
               
               Cow position:chr28:20281797-20281969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):143, 39

               
               
               Conread position:37-232
               
               
               Cow position:chr28:10053286-10053096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):62, 70

               
               
               Conread position:38-158
               
               
               Cow position:chr28:7697942-7697822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:95
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr28:21363780-21363916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-210
               
               
               Cow position:chr28:9109256-9109417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:38-222
               
               
               Cow position:chr28:117723-117536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:38-224
               
               
               Cow position:chr28:28765863-28765675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):126, 166

               
               
               Conread position:38-226
               
               
               Cow position:chr28:118649-118841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):48, 166

               
               
               Conread position:39-178
               
               
               Cow position:chr28:11827726-11827865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr28:5199865-5200047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr28:21765996-21766175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:39-221
               
               
               Cow position:chr28:9705691-9705874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):84, 129

               
               
               Conread position:39-222
               
               
               Cow position:chr28:12628777-12628956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr28:4282445-4282324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr28:8656120-8656001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:44-173
               
               
               Cow position:chr28:4643724-4643598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:44-205
               
               
               Cow position:chr28:4022719-4022883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr28:8347777-8347951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-222
               
               
               Cow position:chr28:11398751-11398574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):161, 132

               
               
               Conread position:44-258
               
               
               Cow position:chr28:13527240-13527453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):45, 133

               
               
               Conread position:46-166
               
               
               Cow position:chr28:4138623-4138502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:46-212
               
               
               Cow position:chr28:34830202-34830375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:48-213
               
               
               Cow position:chr28:6563847-6563685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):118, 126

               
               
               Conread position:48-214
               
               
               Cow position:chr28:11828912-11828738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:48-221
               
               
               Cow position:chr28:21845007-21845179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):132, 83

               
               
               Conread position:51-174
               
               
               Cow position:chr28:21263210-21263327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:99
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:51-220
               
               
               Cow position:chr28:14657766-14657932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:54-174
               
               
               Cow position:chr28:3311168-3311048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:92
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:56-210
               
               
               Cow position:chr28:14947773-14947933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:201-441
               
               
               Cow position:chr28:15920460-15920213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):145, 43

               
               
               Conread position:202-444
               
               
               Cow position:chr28:21325802-21326045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:168
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):144, 16

               
               
               Conread position:1-168
               
               
               Cow position:chr29:24188071-24187901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr29:17109954-17110122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr29:17297130-17297340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-210
               
               
               Cow position:chr29:28420750-28420968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):10, 42

               
               
               Conread position:1-221
               
               
               Cow position:chr29:32656427-32656650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:1-239
               
               
               Cow position:chr29:23637684-23637434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:2-204
               
               
               Cow position:chr29:15797947-15798157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:2-205
               
               
               Cow position:chr29:15796481-15796685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-25
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:7-197
               
               
               Cow position:chr29:20167426-20167621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:7-214
               
               
               Cow position:chr29:4120856-4121070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):155, 200

               
               
               Conread position:8-213
               
               
               Cow position:chr29:19420610-19420417 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:8-215
               
               
               Cow position:chr29:41530853-41531059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:9-174
               
               
               Cow position:chr29:16200474-16200309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:10-220
               
               
               Cow position:chr29:5520480-5520264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-30
               
               
               Alignm gaps (pig, cow):154, 121

               
               
               Conread position:14-174
               
               
               Cow position:chr29:23825201-23825045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:18-234
               
               
               Cow position:chr29:24614358-24614572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 164

               
               
               Conread position:21-174
               
               
               Cow position:chr29:18878465-18878312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:22-210
               
               
               Cow position:chr29:19363728-19363908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:23-213
               
               
               Cow position:chr29:26563805-26563607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):57, 88

               
               
               Conread position:30-173
               
               
               Cow position:chr29:33143329-33143190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:33-212
               
               
               Cow position:chr29:7414529-7414708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):24, 93

               
               
               Conread position:34-214
               
               
               Cow position:chr29:28066516-28066695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):142, 72

               
               
               Conread position:37-168
               
               
               Cow position:chr29:28257173-28257304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):125, 81

               
               
               Conread position:37-173
               
               
               Cow position:chr29:8163797-8163661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr29:15947199-15947336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-196
               
               
               Cow position:chr29:38582000-38582159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):151, 143

               
               
               Conread position:37-205
               
               
               Cow position:chr29:30440969-30441134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):65, 48

               
               
               Conread position:38-174
               
               
               Cow position:chr29:29057208-29057343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):73, 88

               
               
               Conread position:38-214
               
               
               Cow position:chr29:26017469-26017290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:39-189
               
               
               Cow position:chr29:21443304-21443151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:39-201
               
               
               Cow position:chr29:23262287-23262131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr29:20781052-20781224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):165, 137

               
               
               Conread position:39-214
               
               
               Cow position:chr29:2414718-2414540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:39-215
               
               
               Cow position:chr29:43088342-43088511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:39-222
               
               
               Cow position:chr29:19949341-19949517 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:44-168
               
               
               Cow position:chr29:24365858-24365735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):120, 27

               
               
               Conread position:44-171
               
               
               Cow position:chr29:42404986-42405114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr29:4441165-4441038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr29:23142295-23142165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr29:5046692-5046865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:44-222
               
               
               Cow position:chr29:8669398-8669570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):152, 27

               
               
               Conread position:45-243
               
               
               Cow position:chr29:14576899-14577091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):190, 77

               
               
               Conread position:46-178
               
               
               Cow position:chr29:7124859-7124992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:46-208
               
               
               Cow position:chr29:16735265-16735435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:46-210
               
               
               Cow position:chr29:4492010-4491842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:48-209
               
               
               Cow position:chr29:36546739-36546583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:48-211
               
               
               Cow position:chr29:36357169-36357329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:51-197
               
               
               Cow position:chr29:3192869-3192724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):111, 129

               
               
               Conread position:54-178
               
               
               Cow position:chr29:24119451-24119327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:94
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr3:2675001-2675176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr3:11987301-11987472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 126

               
               
               Conread position:1-206
               
               
               Cow position:chr3:9120817-9121026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):175, 31

               
               
               Conread position:1-207
               
               
               Cow position:chr3:76268003-76267794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):30, 126

               
               
               Conread position:1-210
               
               
               Cow position:chr3:15443756-15443549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):23, 180

               
               
               Conread position:1-210
               
               
               Cow position:chr3:22165443-22165226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):26, 42

               
               
               Conread position:1-210
               
               
               Cow position:chr3:48900360-48900153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):31, 172

               
               
               Conread position:1-213
               
               
               Cow position:chr3:3556517-3556728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):10, 176

               
               
               Conread position:1-214
               
               
               Cow position:chr3:73335256-73335471 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):15, 103

               
               
               Conread position:1-235
               
               
               Cow position:chr3:35624573-35624338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:1-242
               
               
               Cow position:chr3:59604818-59605061 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):15, 46

               
               
               Conread position:1-244
               
               
               Cow position:chr3:31309382-31309134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):29, 209

               
               
               Conread position:7-174
               
               
               Cow position:chr3:48483158-48483325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-209
               
               
               Cow position:chr3:53604766-53604557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):173, 114

               
               
               Conread position:7-213
               
               
               Cow position:chr3:210299-210502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):165, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr3:15973547-15973714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:8-178
               
               
               Cow position:chr3:77171296-77171466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-210
               
               
               Cow position:chr3:11229384-11229188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:8-210
               
               
               Cow position:chr3:59947646-59947856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):155, 0

               
               
               Conread position:8-216
               
               
               Cow position:chr3:75050636-75050431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):158, 44

               
               
               Conread position:8-225
               
               
               Cow position:chr3:2506497-2506284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:13-213
               
               
               Cow position:chr3:47199141-47198946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:13-263
               
               
               Cow position:chr3:32376798-32377044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:14-206
               
               
               Cow position:chr3:49363096-49363280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:18-207
               
               
               Cow position:chr3:55730478-55730281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:20-195
               
               
               Cow position:chr3:11640726-11640905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:20-213
               
               
               Cow position:chr3:23203238-23203041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):146, 56

               
               
               Conread position:21-166
               
               
               Cow position:chr3:61024029-61023884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:109
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-173
               
               
               Cow position:chr3:72391076-72391231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:21-197
               
               
               Cow position:chr3:37041413-37041591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):159, 97

               
               
               Conread position:21-206
               
               
               Cow position:chr3:3656508-3656699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:21-208
               
               
               Cow position:chr3:68303308-68303493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 155

               
               
               Conread position:21-208
               
               
               Cow position:chr3:72342239-72342434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:21-209
               
               
               Cow position:chr3:23132175-23131992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:21-210
               
               
               Cow position:chr3:9026092-9025898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 41

               
               
               Conread position:21-212
               
               
               Cow position:chr3:58010836-58010644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):14, 34

               
               
               Conread position:21-220
               
               
               Cow position:chr3:20043600-20043396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:21-222
               
               
               Cow position:chr3:3164116-3163916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):77, 139

               
               
               Conread position:21-224
               
               
               Cow position:chr3:51150122-51150332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:22-210
               
               
               Cow position:chr3:52845551-52845732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:22-212
               
               
               Cow position:chr3:52608177-52608363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:22-222
               
               
               Cow position:chr3:76168637-76168427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:22-247
               
               
               Cow position:chr3:55189759-55189523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:31-170
               
               
               Cow position:chr3:29234677-29234537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:37-160
               
               
               Cow position:chr3:38783616-38783738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:37-166
               
               
               Cow position:chr3:75238467-75238596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr3:83199521-83199657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:37-197
               
               
               Cow position:chr3:17039622-17039785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:37-199
               
               
               Cow position:chr3:67942526-67942367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:37-209
               
               
               Cow position:chr3:27976514-27976342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):113, 91

               
               
               Conread position:37-213
               
               
               Cow position:chr3:55318887-55318718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr3:62186161-62186338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):88, 142

               
               
               Conread position:37-215
               
               
               Cow position:chr3:65058708-65058881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:37-222
               
               
               Cow position:chr3:36375530-36375346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):129, 97

               
               
               Conread position:38-178
               
               
               Cow position:chr3:68624228-68624367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:38-198
               
               
               Cow position:chr3:19788819-19788664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:38-213
               
               
               Cow position:chr3:17531727-17531553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:38-213
               
               
               Cow position:chr3:63069355-63069181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):97, 148

               
               
               Conread position:38-214
               
               
               Cow position:chr3:76056274-76056097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):142, 84

               
               
               Conread position:38-220
               
               
               Cow position:chr3:14601693-14601515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:38-222
               
               
               Cow position:chr3:30180097-30180275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:38-225
               
               
               Cow position:chr3:59317713-59317895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):78, 48

               
               
               Conread position:39-174
               
               
               Cow position:chr3:2016447-2016576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:39-205
               
               
               Cow position:chr3:35802929-35802753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr3:28676208-28676382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr3:54067806-54067980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-231
               
               
               Cow position:chr3:75966772-75966583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):53, 89

               
               
               Conread position:39-239
               
               
               Cow position:chr3:38248664-38248860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):74, 137

               
               
               Conread position:39-240
               
               
               Cow position:chr3:59649270-59649472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:146
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):127, 73

               
               
               Conread position:43-224
               
               
               Cow position:chr3:8523138-8522963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr3:11281783-11281905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-173
               
               
               Cow position:chr3:39996871-39996748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr3:51609169-51609040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr3:3453596-3453759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr3:60370999-60371172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:44-217
               
               
               Cow position:chr3:3011163-3011340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):71, 107

               
               
               Conread position:44-236
               
               
               Cow position:chr3:56678332-56678140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):136, 48

               
               
               Conread position:44-255
               
               
               Cow position:chr3:25037975-25037768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):165, 60

               
               
               Conread position:45-213
               
               
               Cow position:chr3:76300789-76300954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:45-214
               
               
               Cow position:chr3:70431448-70431621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):95, 24

               
               
               Conread position:45-221
               
               
               Cow position:chr3:84807310-84807136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-25
               
               
               Alignm gaps (pig, cow):161, 128

               
               
               Conread position:46-165
               
               
               Cow position:chr3:62789936-62789815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:46-206
               
               
               Cow position:chr3:29946406-29946570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):135, 60

               
               
               Conread position:46-208
               
               
               Cow position:chr3:621453-621616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:121
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 133

               
               
               Conread position:46-208
               
               
               Cow position:chr3:24468366-24468196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:46-221
               
               
               Cow position:chr3:42483945-42484128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:46-222
               
               
               Cow position:chr3:4071752-4071579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):159, 32

               
               
               Conread position:46-223
               
               
               Cow position:chr3:18479279-18479106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:46-224
               
               
               Cow position:chr3:79271692-79271503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-27
               
               
               Alignm gaps (pig, cow):120, 99

               
               
               Conread position:46-225
               
               
               Cow position:chr3:9663153-9662977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:46-244
               
               
               Cow position:chr3:78443551-78443347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:48-209
               
               
               Cow position:chr3:22078096-22078254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:52-210
               
               
               Cow position:chr3:36412061-36411901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:52-223
               
               
               Cow position:chr3:61171344-61171168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:52-229
               
               
               Cow position:chr3:43389103-43388929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:54-197
               
               
               Cow position:chr3:68565848-68565987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):122, 18

               
               
               Conread position:204-452
               
               
               Cow position:chr3:5047292-5047039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:172
               
               
               Alignm E-value:6e-26
               
               
               Alignm gaps (pig, cow):134, 24

               
               
               Conread position:204-473
               
               
               Cow position:chr3:56396006-56396280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):142, 58

               
               
               Conread position:205-475
               
               
               Cow position:chr3:7158839-7158565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):141, 23

               
               
               Conread position:205-482
               
               
               Cow position:chr3:7168687-7168969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:190
               
               
               Alignm E-value:9e-29
               
               
               Alignm gaps (pig, cow):144, 23

               
               
               Conread position:279-490
               
               
               Cow position:chr3:6660188-6660405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:1-166
               
               
               Cow position:chr4:45249959-45250126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-205
               
               
               Cow position:chr4:12004207-12004408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-209
               
               
               Cow position:chr4:67393080-67393292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 203

               
               
               Conread position:1-210
               
               
               Cow position:chr4:7847291-7847083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 174

               
               
               Conread position:1-210
               
               
               Cow position:chr4:28836525-28836735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):37, 31

               
               
               Conread position:1-212
               
               
               Cow position:chr4:617389-617171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):165, 31

               
               
               Conread position:1-212
               
               
               Cow position:chr4:56239871-56239660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):16, 119

               
               
               Conread position:1-214
               
               
               Cow position:chr4:20147172-20147382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):26, 32

               
               
               Conread position:1-214
               
               
               Cow position:chr4:26659288-26659497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):26, 125

               
               
               Conread position:1-215
               
               
               Cow position:chr4:66256675-66256889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 100

               
               
               Conread position:1-218
               
               
               Cow position:chr4:19238208-19238433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 47

               
               
               Conread position:1-222
               
               
               Cow position:chr4:47038756-47038974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):30, 140

               
               
               Conread position:1-242
               
               
               Cow position:chr4:45706032-45706269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):114, 30

               
               
               Conread position:1-257
               
               
               Cow position:chr4:34383352-34383087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:6-213
               
               
               Cow position:chr4:38944262-38944063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:7-160
               
               
               Cow position:chr4:48137943-48138090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:7-174
               
               
               Cow position:chr4:27511541-27511708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-197
               
               
               Cow position:chr4:22713496-22713309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 24

               
               
               Conread position:8-170
               
               
               Cow position:chr4:40414630-40414472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:8-221
               
               
               Cow position:chr4:17790294-17790082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):158, 117

               
               
               Conread position:8-222
               
               
               Cow position:chr4:47305075-47305297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):172, 0

               
               
               Conread position:13-174
               
               
               Cow position:chr4:53819683-53819524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:114
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:14-214
               
               
               Cow position:chr4:38209971-38209778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:14-222
               
               
               Cow position:chr4:19199283-19199075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:15-212
               
               
               Cow position:chr4:29318071-29317868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):77, 191

               
               
               Conread position:20-213
               
               
               Cow position:chr4:61608955-61608772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:20-225
               
               
               Cow position:chr4:25802700-25802906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:146
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):160, 182

               
               
               Conread position:21-166
               
               
               Cow position:chr4:23799755-23799610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 91

               
               
               Conread position:21-174
               
               
               Cow position:chr4:43740545-43740691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr4:44773032-44772879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-178
               
               
               Cow position:chr4:27699042-27699204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 158

               
               
               Conread position:21-211
               
               
               Cow position:chr4:33181555-33181751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:21-213
               
               
               Cow position:chr4:5250198-5250398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:21-213
               
               
               Cow position:chr4:47230987-47230790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):146, 184

               
               
               Conread position:21-213
               
               
               Cow position:chr4:47284002-47283805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):146, 184

               
               
               Conread position:21-213
               
               
               Cow position:chr4:50494782-50494986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:21-214
               
               
               Cow position:chr4:46656140-46656331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):99, 155

               
               
               Conread position:23-213
               
               
               Cow position:chr4:348412-348225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):157, 99

               
               
               Conread position:25-216
               
               
               Cow position:chr4:62794349-62794156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 154

               
               
               Conread position:27-214
               
               
               Cow position:chr4:8182620-8182428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):105, 95

               
               
               Conread position:37-166
               
               
               Cow position:chr4:22051089-22050960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:97
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-173
               
               
               Cow position:chr4:39010076-39010213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 70

               
               
               Conread position:37-213
               
               
               Cow position:chr4:47417439-47417612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:37-215
               
               
               Cow position:chr4:45483825-45484013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 61

               
               
               Conread position:38-166
               
               
               Cow position:chr4:22101237-22101109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr4:23271310-23271444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr4:23445018-23444878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):79, 44

               
               
               Conread position:38-174
               
               
               Cow position:chr4:38946243-38946379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-213
               
               
               Cow position:chr4:23600195-23600359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:38-222
               
               
               Cow position:chr4:56395540-56395721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:38-246
               
               
               Cow position:chr4:40995758-40995967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:39-174
               
               
               Cow position:chr4:53380716-53380851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-207
               
               
               Cow position:chr4:56307831-56308003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:39-222
               
               
               Cow position:chr4:41098964-41099153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:39-222
               
               
               Cow position:chr4:56746018-56746210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:39-228
               
               
               Cow position:chr4:4085082-4084887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):132, 82

               
               
               Conread position:40-210
               
               
               Cow position:chr4:45801545-45801711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:40-215
               
               
               Cow position:chr4:53050022-53050203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):139, 36

               
               
               Conread position:43-178
               
               
               Cow position:chr4:45723278-45723413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):119, 130

               
               
               Conread position:44-209
               
               
               Cow position:chr4:26959935-26959774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:44-209
               
               
               Cow position:chr4:38358791-38358625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):142, 106

               
               
               Conread position:44-210
               
               
               Cow position:chr4:16637041-16636872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr4:22907538-22907702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):138, 81

               
               
               Conread position:44-213
               
               
               Cow position:chr4:32693822-32693984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr4:63078256-63078434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:44-215
               
               
               Cow position:chr4:38822283-38822110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:44-218
               
               
               Cow position:chr4:38949503-38949316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:44-219
               
               
               Cow position:chr4:2681363-2681543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):139, 111

               
               
               Conread position:44-222
               
               
               Cow position:chr4:5790676-5790851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:44-223
               
               
               Cow position:chr4:20282275-20282459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 55

               
               
               Conread position:44-225
               
               
               Cow position:chr4:45874432-45874245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):72, 175

               
               
               Conread position:46-171
               
               
               Cow position:chr4:50131552-50131677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-197
               
               
               Cow position:chr4:3388580-3388733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):134, 30

               
               
               Conread position:46-208
               
               
               Cow position:chr4:25197459-25197299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):52, 130

               
               
               Conread position:46-210
               
               
               Cow position:chr4:24371824-24371663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 60

               
               
               Conread position:46-213
               
               
               Cow position:chr4:30172192-30172020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:46-243
               
               
               Cow position:chr4:45213151-45212959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:47-204
               
               
               Cow position:chr4:56852884-56853050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):93, 162

               
               
               Conread position:47-208
               
               
               Cow position:chr4:28854238-28854080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):133, 75

               
               
               Conread position:47-214
               
               
               Cow position:chr4:27425748-27425905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:48-222
               
               
               Cow position:chr4:63261508-63261678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):48, 54

               
               
               Conread position:50-221
               
               
               Cow position:chr4:63198332-63198149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:51-213
               
               
               Cow position:chr4:22127966-22127806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):115, 71

               
               
               Conread position:202-475
               
               
               Cow position:chr4:101238-100960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):136, 42

               
               
               Conread position:1-120
               
               
               Cow position:chr5:54311358-54311479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 30

               
               
               Conread position:1-175
               
               
               Cow position:chr5:61007087-61007263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-207
               
               
               Cow position:chr5:44196907-44196702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):16, 111

               
               
               Conread position:1-210
               
               
               Cow position:chr5:47756798-47757003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:1-210
               
               
               Cow position:chr5:66366532-66366737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 48

               
               
               Conread position:1-213
               
               
               Cow position:chr5:60515006-60514783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-32
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:1-214
               
               
               Cow position:chr5:21828890-21829105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):15, 70

               
               
               Conread position:1-222
               
               
               Cow position:chr5:59384665-59384446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 36

               
               
               Conread position:1-226
               
               
               Cow position:chr5:61455870-61456093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):179, 30

               
               
               Conread position:1-227
               
               
               Cow position:chr5:52001601-52001369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):9, 205

               
               
               Conread position:3-197
               
               
               Cow position:chr5:35684962-35685159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):105, 29

               
               
               Conread position:7-210
               
               
               Cow position:chr5:57767955-57767749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):173, 94

               
               
               Conread position:7-215
               
               
               Cow position:chr5:7057371-7057164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):109, 52

               
               
               Conread position:8-166
               
               
               Cow position:chr5:16939563-16939405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr5:53980723-53980557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr5:65760503-65760339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:8-207
               
               
               Cow position:chr5:16185409-16185617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:8-213
               
               
               Cow position:chr5:17828448-17828234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:8-229
               
               
               Cow position:chr5:1247297-1247521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):156, 36

               
               
               Conread position:8-230
               
               
               Cow position:chr5:52853000-52853224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 117

               
               
               Conread position:13-174
               
               
               Cow position:chr5:30035103-30035264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-207
               
               
               Cow position:chr5:742765-742964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):22, 106

               
               
               Conread position:13-214
               
               
               Cow position:chr5:40122574-40122376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:13-221
               
               
               Cow position:chr5:55965858-55965648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):167, 189

               
               
               Conread position:13-224
               
               
               Cow position:chr5:61049368-61049576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:14-173
               
               
               Cow position:chr5:53055524-53055365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:14-201
               
               
               Cow position:chr5:43402942-43403139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 120

               
               
               Conread position:20-177
               
               
               Cow position:chr5:60117471-60117627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):79, 87

               
               
               Conread position:20-223
               
               
               Cow position:chr5:11668142-11667934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):160, 119

               
               
               Conread position:21-166
               
               
               Cow position:chr5:70750142-70749999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr5:6695591-6695744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):95, 66

               
               
               Conread position:21-206
               
               
               Cow position:chr5:30253785-30253964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:21-208
               
               
               Cow position:chr5:14550540-14550353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-210
               
               
               Cow position:chr5:49821472-49821664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):116, 97

               
               
               Conread position:23-209
               
               
               Cow position:chr5:30221732-30221539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):143, 89

               
               
               Conread position:34-166
               
               
               Cow position:chr5:51053592-51053461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:34-204
               
               
               Cow position:chr5:36370336-36370506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:34-247
               
               
               Cow position:chr5:53779212-53779420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:35-223
               
               
               Cow position:chr5:35208319-35208510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:36-207
               
               
               Cow position:chr5:17987835-17987665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:36-222
               
               
               Cow position:chr5:43839940-43839751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):144, 0

               
               
               Conread position:37-166
               
               
               Cow position:chr5:24915467-24915338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-166
               
               
               Cow position:chr5:59662998-59662870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr5:32935804-32935940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr5:35235629-35235492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr5:55756358-55756218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:37-205
               
               
               Cow position:chr5:62011743-62011916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):139, 0

               
               
               Conread position:37-207
               
               
               Cow position:chr5:20995026-20994851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):129, 120

               
               
               Conread position:37-218
               
               
               Cow position:chr5:7012790-7012602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):55, 61

               
               
               Conread position:37-222
               
               
               Cow position:chr5:57556089-57556274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):122, 163

               
               
               Conread position:38-174
               
               
               Cow position:chr5:35247049-35246913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr5:48062056-48061915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):89, 60

               
               
               Conread position:38-208
               
               
               Cow position:chr5:55942318-55942148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-209
               
               
               Cow position:chr5:8736218-8736039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):72, 15

               
               
               Conread position:38-210
               
               
               Cow position:chr5:56284364-56284546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:38-215
               
               
               Cow position:chr5:21721409-21721229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):138, 87

               
               
               Conread position:38-222
               
               
               Cow position:chr5:4280509-4280685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):167, 84

               
               
               Conread position:38-222
               
               
               Cow position:chr5:49207266-49207091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:38-242
               
               
               Cow position:chr5:58401630-58401824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):156, 84

               
               
               Conread position:39-173
               
               
               Cow position:chr5:45397632-45397761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-178
               
               
               Cow position:chr5:62107424-62107285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):128, 134

               
               
               Conread position:39-211
               
               
               Cow position:chr5:61201821-61201996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr5:25035196-25035023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):86, 138

               
               
               Conread position:39-213
               
               
               Cow position:chr5:30132802-30132629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr5:62811886-62812070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:39-213
               
               
               Cow position:chr5:63068661-63068479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:39-215
               
               
               Cow position:chr5:40152547-40152723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-255
               
               
               Cow position:chr5:65679911-65679698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):128, 79

               
               
               Conread position:42-230
               
               
               Cow position:chr5:55799111-55799308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr5:25597899-25598024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 63

               
               
               Conread position:44-174
               
               
               Cow position:chr5:34347667-34347538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr5:43611765-43611895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr5:64140605-64140733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:44-178
               
               
               Cow position:chr5:19561381-19561247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-178
               
               
               Cow position:chr5:26097356-26097489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr5:18289189-18289346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr5:61914631-61914810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr5:39937182-39937357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):122, 162

               
               
               Conread position:44-213
               
               
               Cow position:chr5:55949612-55949435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):136, 82

               
               
               Conread position:44-213
               
               
               Cow position:chr5:57447599-57447422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-222
               
               
               Cow position:chr5:12901984-12902159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:44-247
               
               
               Cow position:chr5:20128119-20128325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):54, 58

               
               
               Conread position:45-206
               
               
               Cow position:chr5:62996025-62996194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:45-210
               
               
               Cow position:chr5:55783895-55783733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-24
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:45-247
               
               
               Cow position:chr5:31648487-31648681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:46-207
               
               
               Cow position:chr5:22102627-22102789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):134, 76

               
               
               Conread position:46-213
               
               
               Cow position:chr5:41530871-41530701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:46-213
               
               
               Cow position:chr5:54340835-54341011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:46-222
               
               
               Cow position:chr5:24108991-24108816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):161, 129

               
               
               Conread position:46-222
               
               
               Cow position:chr5:38683572-38683755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):125, 153

               
               
               Conread position:46-228
               
               
               Cow position:chr5:56549435-56549625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:46-229
               
               
               Cow position:chr5:12724322-12724145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:47-200
               
               
               Cow position:chr5:58237380-58237225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:47-219
               
               
               Cow position:chr5:20288193-20288023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):45, 131

               
               
               Conread position:51-213
               
               
               Cow position:chr5:45436422-45436264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:51-213
               
               
               Cow position:chr5:57074257-57074091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):129, 70

               
               
               Conread position:51-221
               
               
               Cow position:chr5:39815427-39815248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 31

               
               
               Conread position:52-166
               
               
               Cow position:chr5:54875619-54875506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:91
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:52-213
               
               
               Cow position:chr5:30497572-30497731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):114, 67

               
               
               Conread position:54-174
               
               
               Cow position:chr5:56624440-56624319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:54-222
               
               
               Cow position:chr5:69461413-69461580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):122, 17

               
               
               Conread position:204-475
               
               
               Cow position:chr5:27909479-27909205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:185
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):134, 40

               
               
               Conread position:1-166
               
               
               Cow position:chr6:48435870-48436032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-168
               
               
               Cow position:chr6:10039759-10039929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-172
               
               
               Cow position:chr6:66259765-66259944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:133
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-173
               
               
               Cow position:chr6:21475763-21475934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):19, 99

               
               
               Conread position:1-213
               
               
               Cow position:chr6:50771323-50771106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):179, 31

               
               
               Conread position:1-222
               
               
               Cow position:chr6:22876895-22876672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):38, 31

               
               
               Conread position:1-223
               
               
               Cow position:chr6:24468360-24468145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:1-224
               
               
               Cow position:chr6:5330448-5330678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 102

               
               
               Conread position:2-208
               
               
               Cow position:chr6:12964889-12965104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:7-247
               
               
               Cow position:chr6:15937813-15937578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):23, 170

               
               
               Conread position:8-166
               
               
               Cow position:chr6:39093794-39093945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 91

               
               
               Conread position:8-200
               
               
               Cow position:chr6:50984267-50984460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):118, 90

               
               
               Conread position:8-224
               
               
               Cow position:chr6:15974477-15974261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):171, 23

               
               
               Conread position:13-166
               
               
               Cow position:chr6:69153459-69153612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-207
               
               
               Cow position:chr6:58304464-58304662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):153, 97

               
               
               Conread position:14-213
               
               
               Cow position:chr6:19264448-19264251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:21-160
               
               
               Cow position:chr6:58076451-58076590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-178
               
               
               Cow position:chr6:50883618-50883466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:116
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:21-213
               
               
               Cow position:chr6:21052392-21052192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):95, 187

               
               
               Conread position:21-213
               
               
               Cow position:chr6:51530130-51529933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:21-233
               
               
               Cow position:chr6:33302452-33302668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):90, 111

               
               
               Conread position:22-213
               
               
               Cow position:chr6:38640292-38640486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):144, 100

               
               
               Conread position:22-232
               
               
               Cow position:chr6:21184164-21183958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:34-213
               
               
               Cow position:chr6:7801326-7801145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):132, 88

               
               
               Conread position:34-215
               
               
               Cow position:chr6:53811653-53811833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):94, 139

               
               
               Conread position:35-209
               
               
               Cow position:chr6:28559609-28559780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):58, 84

               
               
               Conread position:36-215
               
               
               Cow position:chr6:8365884-8366065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:36-222
               
               
               Cow position:chr6:62805715-62805898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr6:5445741-5445876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr6:30895918-30895782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:37-210
               
               
               Cow position:chr6:35985063-35984882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:135
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:37-215
               
               
               Cow position:chr6:62437488-62437673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):129, 170

               
               
               Conread position:37-221
               
               
               Cow position:chr6:14914162-14913979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):65, 61

               
               
               Conread position:37-221
               
               
               Cow position:chr6:21004750-21004932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):89, 137

               
               
               Conread position:37-223
               
               
               Cow position:chr6:43906610-43906424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-265
               
               
               Cow position:chr6:54365254-54365034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:38-166
               
               
               Cow position:chr6:10176227-10176099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-166
               
               
               Cow position:chr6:21467193-21467065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:96
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-173
               
               
               Cow position:chr6:16411685-16411820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:106
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr6:10105904-10105772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr6:15058451-15058583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:103
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr6:48379539-48379403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-197
               
               
               Cow position:chr6:35342105-35341948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):137, 58

               
               
               Conread position:38-205
               
               
               Cow position:chr6:40032265-40032426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):120, 87

               
               
               Conread position:38-222
               
               
               Cow position:chr6:44544074-44543893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):167, 72

               
               
               Conread position:38-222
               
               
               Cow position:chr6:64432013-64432192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):138, 86

               
               
               Conread position:38-225
               
               
               Cow position:chr6:56986576-56986392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:39-197
               
               
               Cow position:chr6:1103663-1103506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 59

               
               
               Conread position:39-222
               
               
               Cow position:chr6:53145607-53145418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):140, 168

               
               
               Conread position:44-174
               
               
               Cow position:chr6:8187109-8186979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr6:21175418-21175542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr6:36225189-36225318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:44-207
               
               
               Cow position:chr6:57079504-57079664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:44-209
               
               
               Cow position:chr6:33509867-33510029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr6:18447437-18447268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr6:54840427-54840245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:44-222
               
               
               Cow position:chr6:49685898-49686076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-225
               
               
               Cow position:chr6:16627815-16627995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):122, 81

               
               
               Conread position:44-225
               
               
               Cow position:chr6:62224502-62224685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):67, 107

               
               
               Conread position:44-237
               
               
               Cow position:chr6:26408424-26408235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):118, 130

               
               
               Conread position:45-202
               
               
               Cow position:chr6:32453467-32453622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 41

               
               
               Conread position:45-221
               
               
               Cow position:chr6:53932765-53932589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):121, 61

               
               
               Conread position:46-166
               
               
               Cow position:chr6:2153516-2153396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:93
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-209
               
               
               Cow position:chr6:16137688-16137516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:46-210
               
               
               Cow position:chr6:66293567-66293735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):120, 0

               
               
               Conread position:46-213
               
               
               Cow position:chr6:35727932-35728103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):66, 158

               
               
               Conread position:46-221
               
               
               Cow position:chr6:36809122-36808940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):120, 161

               
               
               Conread position:46-225
               
               
               Cow position:chr6:5095459-5095276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):130, 158

               
               
               Conread position:47-206
               
               
               Cow position:chr6:8600083-8600255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:47-208
               
               
               Cow position:chr6:3936866-3937026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):83, 130

               
               
               Conread position:51-174
               
               
               Cow position:chr6:31928724-31928847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:96
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:52-215
               
               
               Cow position:chr6:12669184-12669344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:119
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):73, 46

               
               
               Conread position:52-222
               
               
               Cow position:chr6:54828234-54828056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:55-213
               
               
               Cow position:chr6:3952610-3952778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:218-472
               
               
               Cow position:chr6:3148951-3149211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):111, 26

               
               
               Conread position:218-472
               
               
               Cow position:chr6:59919331-59919078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:168
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):151, 26

               
               
               Conread position:1-167
               
               
               Cow position:chr7:40710165-40710330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):13, 127

               
               
               Conread position:1-170
               
               
               Cow position:chr7:37435281-37435452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr7:38347810-38347636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):30, 103

               
               
               Conread position:1-174
               
               
               Cow position:chr7:58301901-58301730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:1-178
               
               
               Cow position:chr7:37022966-37023148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-205
               
               
               Cow position:chr7:58330791-58330582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 191

               
               
               Conread position:1-210
               
               
               Cow position:chr7:11487634-11487423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:1-213
               
               
               Cow position:chr7:16022333-16022538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):31, 126

               
               
               Conread position:1-220
               
               
               Cow position:chr7:63749438-63749214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):27, 123

               
               
               Conread position:1-238
               
               
               Cow position:chr7:68857548-68857315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):161, 169

               
               
               Conread position:1-242
               
               
               Cow position:chr7:1720928-1720692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 30

               
               
               Conread position:1-242
               
               
               Cow position:chr7:23624628-23624391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):24, 64

               
               
               Conread position:7-174
               
               
               Cow position:chr7:15650801-15650633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:7-174
               
               
               Cow position:chr7:39022164-39021997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-213
               
               
               Cow position:chr7:8387368-8387153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):173, 161

               
               
               Conread position:7-223
               
               
               Cow position:chr7:249459-249250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:7-232
               
               
               Cow position:chr7:43450585-43450811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 182

               
               
               Conread position:8-214
               
               
               Cow position:chr7:8777255-8777463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):84, 91

               
               
               Conread position:8-222
               
               
               Cow position:chr7:47931749-47931536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:8-224
               
               
               Cow position:chr7:58800216-58800427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:8-225
               
               
               Cow position:chr7:3304624-3304840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:8-247
               
               
               Cow position:chr7:46963786-46964030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:167
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):168, 211

               
               
               Conread position:13-160
               
               
               Cow position:chr7:10384929-10385077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):19, 101

               
               
               Conread position:13-211
               
               
               Cow position:chr7:53996352-53996552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):167, 155

               
               
               Conread position:13-213
               
               
               Cow position:chr7:50442842-50442646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:14-205
               
               
               Cow position:chr7:47513631-47513438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):162, 48

               
               
               Conread position:14-221
               
               
               Cow position:chr7:49417659-49417860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:14-222
               
               
               Cow position:chr7:36996415-36996612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:14-244
               
               
               Cow position:chr7:36665378-36665603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):106, 62

               
               
               Conread position:15-174
               
               
               Cow position:chr7:28047624-28047783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-175
               
               
               Cow position:chr7:13067216-13067371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr7:53834531-53834378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr7:54367553-54367706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-204
               
               
               Cow position:chr7:15534015-15533835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):150, 97

               
               
               Conread position:21-207
               
               
               Cow position:chr7:40311002-40310814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):159, 101

               
               
               Conread position:21-210
               
               
               Cow position:chr7:27290439-27290253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:21-210
               
               
               Cow position:chr7:51685074-51685268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):145, 184

               
               
               Conread position:21-213
               
               
               Cow position:chr7:6469681-6469878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:21-213
               
               
               Cow position:chr7:17000786-17000978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-214
               
               
               Cow position:chr7:41293686-41293491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):143, 100

               
               
               Conread position:21-222
               
               
               Cow position:chr7:9068540-9068337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):68, 159

               
               
               Conread position:21-243
               
               
               Cow position:chr7:20181139-20180930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):21, 105

               
               
               Conread position:21-244
               
               
               Cow position:chr7:39947189-39946972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):141, 101

               
               
               Conread position:22-174
               
               
               Cow position:chr7:8658576-8658724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:22-178
               
               
               Cow position:chr7:29505176-29505326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:115
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:22-222
               
               
               Cow position:chr7:20534933-20535126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:22-243
               
               
               Cow position:chr7:18388338-18388118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):210, 154

               
               
               Conread position:23-255
               
               
               Cow position:chr7:8025411-8025648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):67, 183

               
               
               Conread position:36-158
               
               
               Cow position:chr7:49636141-49636014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:36-158
               
               
               Cow position:chr7:49745532-49745659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:36-209
               
               
               Cow position:chr7:17772244-17772062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:37-139
               
               
               Cow position:chr7:8088821-8088719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):65, 58

               
               
               Conread position:37-174
               
               
               Cow position:chr7:10945423-10945560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):61, 70

               
               
               Conread position:37-174
               
               
               Cow position:chr7:32920525-32920389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):61, 71

               
               
               Conread position:37-201
               
               
               Cow position:chr7:37651572-37651745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):61, 70

               
               
               Conread position:37-208
               
               
               Cow position:chr7:18958465-18958299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:37-208
               
               
               Cow position:chr7:25860130-25859956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):74, 166

               
               
               Conread position:37-210
               
               
               Cow position:chr7:44942633-44942799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr7:12330150-12329980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:37-213
               
               
               Cow position:chr7:39093850-39093666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:37-228
               
               
               Cow position:chr7:43853254-43853066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):76, 102

               
               
               Conread position:38-174
               
               
               Cow position:chr7:25263445-25263580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:38-174
               
               
               Cow position:chr7:35754749-35754885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-205
               
               
               Cow position:chr7:68540523-68540358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):128, 136

               
               
               Conread position:38-210
               
               
               Cow position:chr7:40688019-40688186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:38-213
               
               
               Cow position:chr7:21228472-21228300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):121, 82

               
               
               Conread position:38-215
               
               
               Cow position:chr7:41122190-41122022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:38-223
               
               
               Cow position:chr7:35088734-35088915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:38-239
               
               
               Cow position:chr7:34216286-34216486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):138, 60

               
               
               Conread position:39-166
               
               
               Cow position:chr7:46823748-46823875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-220
               
               
               Cow position:chr7:35793153-35793331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):177, 136

               
               
               Conread position:39-222
               
               
               Cow position:chr7:59688617-59688796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:39-225
               
               
               Cow position:chr7:40008907-40009090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):69, 93

               
               
               Conread position:39-239
               
               
               Cow position:chr7:49068763-49068562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):127, 189

               
               
               Conread position:40-213
               
               
               Cow position:chr7:28337313-28337491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):136, 72

               
               
               Conread position:44-174
               
               
               Cow position:chr7:37697888-37698018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr7:58615348-58615477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:44-177
               
               
               Cow position:chr7:32813526-32813659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-178
               
               
               Cow position:chr7:53862595-53862722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr7:49942048-49941878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):122, 47

               
               
               Conread position:44-212
               
               
               Cow position:chr7:33370475-33370648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):137, 80

               
               
               Conread position:44-213
               
               
               Cow position:chr7:31885676-31885852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):136, 73

               
               
               Conread position:44-213
               
               
               Cow position:chr7:62603260-62603428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:124
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:44-218
               
               
               Cow position:chr7:39144775-39144950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):136, 84

               
               
               Conread position:44-222
               
               
               Cow position:chr7:46051739-46051915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):67, 133

               
               
               Conread position:44-224
               
               
               Cow position:chr7:9077727-9077539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 82

               
               
               Conread position:44-224
               
               
               Cow position:chr7:25415477-25415655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:44-266
               
               
               Cow position:chr7:13606536-13606771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):91, 179

               
               
               Conread position:46-174
               
               
               Cow position:chr7:19797844-19797716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-210
               
               
               Cow position:chr7:14191661-14191491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 61

               
               
               Conread position:46-210
               
               
               Cow position:chr7:27062859-27063029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):66, 39

               
               
               Conread position:46-214
               
               
               Cow position:chr7:63300281-63300457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:47-225
               
               
               Cow position:chr7:42222852-42222674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):45, 51

               
               
               Conread position:50-231
               
               
               Cow position:chr7:35651641-35651455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):57, 49

               
               
               Conread position:51-197
               
               
               Cow position:chr7:53211308-53211451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):115, 71

               
               
               Conread position:51-215
               
               
               Cow position:chr7:10466649-10466488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:51-219
               
               
               Cow position:chr7:16285487-16285312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 32

               
               
               Conread position:52-213
               
               
               Cow position:chr7:30290854-30290686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):128, 47

               
               
               Conread position:53-209
               
               
               Cow position:chr7:50432601-50432443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):113, 70

               
               
               Conread position:54-166
               
               
               Cow position:chr7:54038027-54037915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:1-166
               
               
               Cow position:chr8:17046754-17046588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-173
               
               
               Cow position:chr8:34402302-34402476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:1-173
               
               
               Cow position:chr8:45859815-45859989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:1-174
               
               
               Cow position:chr8:17199425-17199251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):29, 97

               
               
               Conread position:1-174
               
               
               Cow position:chr8:36249411-36249239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 121

               
               
               Conread position:1-197
               
               
               Cow position:chr8:32278341-32278142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):29, 60

               
               
               Conread position:1-209
               
               
               Cow position:chr8:24513137-24512922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):165, 20

               
               
               Conread position:1-213
               
               
               Cow position:chr8:35827797-35827576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:150
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr8:55884980-55885189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:1-222
               
               
               Cow position:chr8:38843620-38843400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:147
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 176

               
               
               Conread position:1-229
               
               
               Cow position:chr8:35456835-35456605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:2-170
               
               
               Cow position:chr8:35580627-35580461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):14, 122

               
               
               Conread position:2-222
               
               
               Cow position:chr8:16413802-16413577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 29

               
               
               Conread position:3-209
               
               
               Cow position:chr8:3887341-3887552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):13, 202

               
               
               Conread position:3-221
               
               
               Cow position:chr8:35817110-35816892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):28, 109

               
               
               Conread position:6-220
               
               
               Cow position:chr8:52197443-52197231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:8-165
               
               
               Cow position:chr8:15394844-15394688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:117
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):124, 38

               
               
               Conread position:8-174
               
               
               Cow position:chr8:522412-522246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr8:21324502-21324337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:8-197
               
               
               Cow position:chr8:6477863-6478055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):168, 111

               
               
               Conread position:8-208
               
               
               Cow position:chr8:47057648-47057442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):172, 103

               
               
               Conread position:8-213
               
               
               Cow position:chr8:55725752-55725540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):158, 44

               
               
               Conread position:8-215
               
               
               Cow position:chr8:55089833-55089628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):163, 102

               
               
               Conread position:8-222
               
               
               Cow position:chr8:51443685-51443462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 201

               
               
               Conread position:13-178
               
               
               Cow position:chr8:676295-676129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:13-208
               
               
               Cow position:chr8:5477830-5477632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:144
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):167, 112

               
               
               Conread position:13-221
               
               
               Cow position:chr8:37148331-37148536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:13-222
               
               
               Cow position:chr8:6795403-6795612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):79, 18

               
               
               Conread position:14-213
               
               
               Cow position:chr8:61848705-61848512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:20-166
               
               
               Cow position:chr8:5672126-5671981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):114, 38

               
               
               Conread position:20-200
               
               
               Cow position:chr8:39487609-39487425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):120, 76

               
               
               Conread position:20-229
               
               
               Cow position:chr8:49542910-49543115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):193, 111

               
               
               Conread position:21-160
               
               
               Cow position:chr8:8283271-8283132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-166
               
               
               Cow position:chr8:3423033-3423177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:21-197
               
               
               Cow position:chr8:13479015-13479198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:21-209
               
               
               Cow position:chr8:21600475-21600675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:142
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:21-213
               
               
               Cow position:chr8:5665665-5665460 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-31
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:21-214
               
               
               Cow position:chr8:8323841-8323650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):76, 81

               
               
               Conread position:21-247
               
               
               Cow position:chr8:10832404-10832179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):111, 7

               
               
               Conread position:22-222
               
               
               Cow position:chr8:49305720-49305524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:28-210
               
               
               Cow position:chr8:27033807-27033993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):148, 134

               
               
               Conread position:36-224
               
               
               Cow position:chr8:26625912-26626104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):162, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr8:16144175-16144312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr8:61845505-61845370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:37-209
               
               
               Cow position:chr8:37292045-37291875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):79, 136

               
               
               Conread position:37-213
               
               
               Cow position:chr8:20926586-20926411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 140

               
               
               Conread position:37-215
               
               
               Cow position:chr8:35534240-35534060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):141, 165

               
               
               Conread position:37-225
               
               
               Cow position:chr8:20783219-20783026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):143, 97

               
               
               Conread position:37-225
               
               
               Cow position:chr8:34092808-34093007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):77, 179

               
               
               Conread position:38-174
               
               
               Cow position:chr8:39968236-39968102 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:38-178
               
               
               Cow position:chr8:8097221-8097081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:108
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-208
               
               
               Cow position:chr8:29173255-29173428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):139, 80

               
               
               Conread position:38-210
               
               
               Cow position:chr8:24363592-24363414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):117, 11

               
               
               Conread position:38-213
               
               
               Cow position:chr8:17179988-17179819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):158, 52

               
               
               Conread position:38-247
               
               
               Cow position:chr8:40696920-40697129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:143
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):86, 145

               
               
               Conread position:39-166
               
               
               Cow position:chr8:1297557-1297684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:98
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-174
               
               
               Cow position:chr8:6224390-6224260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:39-207
               
               
               Cow position:chr8:1651637-1651814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:39-210
               
               
               Cow position:chr8:27138748-27138575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):127, 80

               
               
               Conread position:39-210
               
               
               Cow position:chr8:59056253-59056085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):158, 142

               
               
               Conread position:39-227
               
               
               Cow position:chr8:46964782-46964970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-246
               
               
               Cow position:chr8:6184192-6183986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):155, 133

               
               
               Conread position:39-252
               
               
               Cow position:chr8:3821937-3821731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:43-222
               
               
               Cow position:chr8:28383036-28382860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:44-166
               
               
               Cow position:chr8:935757-935877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr8:1999681-1999811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chr8:39592640-39592770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-209
               
               
               Cow position:chr8:18869933-18870095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:117
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:44-209
               
               
               Cow position:chr8:37571652-37571492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr8:8767086-8766910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:44-213
               
               
               Cow position:chr8:37298529-37298693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):122, 54

               
               
               Conread position:44-221
               
               
               Cow position:chr8:31767983-31767813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):168, 78

               
               
               Conread position:44-221
               
               
               Cow position:chr8:54306406-54306576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:125
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:44-222
               
               
               Cow position:chr8:31902634-31902466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:44-224
               
               
               Cow position:chr8:5730084-5730256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:44-228
               
               
               Cow position:chr8:50281928-50282115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:45-222
               
               
               Cow position:chr8:38665591-38665775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:46-210
               
               
               Cow position:chr8:9814947-9815116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:46-210
               
               
               Cow position:chr8:26881774-26881604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):134, 79

               
               
               Conread position:46-211
               
               
               Cow position:chr8:40743166-40742994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:46-222
               
               
               Cow position:chr8:28322024-28322208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):63, 50

               
               
               Conread position:46-225
               
               
               Cow position:chr8:9168763-9168587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:46-225
               
               
               Cow position:chr8:20105820-20105644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:47-209
               
               
               Cow position:chr8:38894067-38894233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):63, 135

               
               
               Conread position:48-213
               
               
               Cow position:chr8:12105603-12105775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:51-208
               
               
               Cow position:chr8:4897012-4897169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-210
               
               
               Cow position:chr8:21917281-21917120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):129, 98

               
               
               Conread position:51-213
               
               
               Cow position:chr8:21058028-21057869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):115, 32

               
               
               Conread position:51-222
               
               
               Cow position:chr8:14047368-14047536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):47, 56

               
               
               Conread position:51-222
               
               
               Cow position:chr8:51511798-51511622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:51-224
               
               
               Cow position:chr8:4722872-4723042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:51-237
               
               
               Cow position:chr8:26305807-26305624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):67, 12

               
               
               Conread position:51-238
               
               
               Cow position:chr8:36471380-36471567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):71, 128

               
               
               Conread position:54-215
               
               
               Cow position:chr8:32332412-32332241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:54-222
               
               
               Cow position:chr8:27731099-27731264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:54-223
               
               
               Cow position:chr8:31615222-31615400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:56-214
               
               
               Cow position:chr8:8924276-8924115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):126, 112

               
               
               Conread position:57-194
               
               
               Cow position:chr8:24871819-24871682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):123, 130

               
               
               Conread position:228-490
               
               
               Cow position:chr8:2208345-2208603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:228-490
               
               
               Cow position:chr8:2213494-2213752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):110, 37

               
               
               Conread position:1-171
               
               
               Cow position:chr9:22443594-22443760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):30, 111

               
               
               Conread position:1-201
               
               
               Cow position:chr9:44396694-44396485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:1-204
               
               
               Cow position:chr9:33119855-33120060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:1-210
               
               
               Cow position:chr9:39011436-39011652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:1-212
               
               
               Cow position:chr9:12786440-12786662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:1-213
               
               
               Cow position:chr9:37199160-37198952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):27, 111

               
               
               Conread position:1-214
               
               
               Cow position:chr9:5110891-5110675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:1-222
               
               
               Cow position:chr9:35466489-35466711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 188

               
               
               Conread position:1-222
               
               
               Cow position:chr9:41728291-41728076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):15, 64

               
               
               Conread position:1-227
               
               
               Cow position:chr9:34410363-34410592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):25, 123

               
               
               Conread position:2-174
               
               
               Cow position:chr9:37955139-37955313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:7-174
               
               
               Cow position:chr9:41470073-41470240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:7-224
               
               
               Cow position:chr9:26477243-26477026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):25, 171

               
               
               Conread position:8-166
               
               
               Cow position:chr9:58368973-58369124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:8-167
               
               
               Cow position:chr9:25375712-25375869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:8-174
               
               
               Cow position:chr9:47214521-47214689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):94, 90

               
               
               Conread position:8-209
               
               
               Cow position:chr9:31344583-31344781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:8-210
               
               
               Cow position:chr9:6840017-6839814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):172, 110

               
               
               Conread position:8-210
               
               
               Cow position:chr9:32669923-32670129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:143
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):160, 152

               
               
               Conread position:8-214
               
               
               Cow position:chr9:13743906-13744122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:8-217
               
               
               Cow position:chr9:52763736-52763944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):168, 102

               
               
               Conread position:8-226
               
               
               Cow position:chr9:14738273-14738052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):172, 117

               
               
               Conread position:12-159
               
               
               Cow position:chr9:1729654-1729801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:109
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-174
               
               
               Cow position:chr9:35403602-35403447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:13-222
               
               
               Cow position:chr9:41644731-41644940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:13-228
               
               
               Cow position:chr9:38624603-38624827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:14-210
               
               
               Cow position:chr9:13169645-13169837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):83, 117

               
               
               Conread position:14-210
               
               
               Cow position:chr9:36628136-36627947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:14-221
               
               
               Cow position:chr9:34286817-34286616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:15-248
               
               
               Cow position:chr9:48900818-48901053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):8, 110

               
               
               Conread position:18-174
               
               
               Cow position:chr9:14357429-14357273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr9:15215676-15215829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 77

               
               
               Conread position:21-174
               
               
               Cow position:chr9:41283026-41282873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:21-174
               
               
               Cow position:chr9:50977241-50977395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:21-221
               
               
               Cow position:chr9:6397772-6397969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):12, 99

               
               
               Conread position:21-222
               
               
               Cow position:chr9:35832608-35832810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):145, 85

               
               
               Conread position:21-231
               
               
               Cow position:chr9:36458010-36457789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:22-209
               
               
               Cow position:chr9:43159762-43159578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):149, 105

               
               
               Conread position:22-210
               
               
               Cow position:chr9:28747510-28747703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):149, 88

               
               
               Conread position:23-201
               
               
               Cow position:chr9:34276201-34276387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:24-210
               
               
               Cow position:chr9:33584677-33584856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):8, 16

               
               
               Conread position:37-166
               
               
               Cow position:chr9:29185142-29185271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:99
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chr9:17769313-17769182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:37-206
               
               
               Cow position:chr9:54086020-54086189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):129, 80

               
               
               Conread position:37-213
               
               
               Cow position:chr9:21292413-21292588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:128
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):143, 88

               
               
               Conread position:37-220
               
               
               Cow position:chr9:8645261-8645070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:37-222
               
               
               Cow position:chr9:34760369-34760552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):173, 89

               
               
               Conread position:38-188
               
               
               Cow position:chr9:9815407-9815257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-197
               
               
               Cow position:chr9:32089382-32089222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):82, 132

               
               
               Conread position:38-207
               
               
               Cow position:chr9:8468051-8467879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):137, 33

               
               
               Conread position:38-222
               
               
               Cow position:chr9:61019368-61019549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:38-224
               
               
               Cow position:chr9:26279175-26279361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):167, 134

               
               
               Conread position:38-247
               
               
               Cow position:chr9:44918286-44918486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):128, 83

               
               
               Conread position:39-213
               
               
               Cow position:chr9:44709822-44709647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):128, 86

               
               
               Conread position:44-174
               
               
               Cow position:chr9:34423609-34423479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr9:17785578-17785753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr9:28315417-28315240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:44-210
               
               
               Cow position:chr9:47446028-47446191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):122, 48

               
               
               Conread position:44-213
               
               
               Cow position:chr9:12355774-12355598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:44-220
               
               
               Cow position:chr9:9723888-9724067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:44-222
               
               
               Cow position:chr9:9091117-9091295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:121
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-238
               
               
               Cow position:chr9:8992191-8992383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):46, 82

               
               
               Conread position:44-256
               
               
               Cow position:chr9:55494998-55495200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:45-221
               
               
               Cow position:chr9:52511106-52510920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:46-174
               
               
               Cow position:chr9:5772691-5772819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:96
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-178
               
               
               Cow position:chr9:35128465-35128333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-209
               
               
               Cow position:chr9:13722152-13722315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:114
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-209
               
               
               Cow position:chr9:19656990-19657156 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):130, 73

               
               
               Conread position:46-209
               
               
               Cow position:chr9:52754864-52755023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:46-213
               
               
               Cow position:chr9:20828892-20828729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:46-213
               
               
               Cow position:chr9:34196180-34196009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:128
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 66

               
               
               Conread position:46-215
               
               
               Cow position:chr9:53124075-53123906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):142, 130

               
               
               Conread position:46-216
               
               
               Cow position:chr9:20017384-20017206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:131
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):129, 85

               
               
               Conread position:46-234
               
               
               Cow position:chr9:20815854-20815658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 22

               
               
               Conread position:47-213
               
               
               Cow position:chr9:8834142-8834307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):92, 130

               
               
               Conread position:48-213
               
               
               Cow position:chr9:53323800-53323963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):158, 127

               
               
               Conread position:51-173
               
               
               Cow position:chr9:19034338-19034216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:97
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:51-221
               
               
               Cow position:chr9:45711019-45711197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:51-222
               
               
               Cow position:chr9:6189384-6189547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:52-201
               
               
               Cow position:chr9:54598653-54598499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:54-174
               
               
               Cow position:chr9:4244406-4244286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:94
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:54-213
               
               
               Cow position:chr9:7543285-7543442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):48, 44

               
               
               Conread position:56-213
               
               
               Cow position:chr9:31626110-31625956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):116, 0

               
               
               Conread position:1-166
               
               
               Cow position:chrX:7648387-7648224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):25, 88

               
               
               Conread position:1-174
               
               
               Cow position:chrX:10516276-10516451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:1-174
               
               
               Cow position:chrX:36866196-36866370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):31, 84

               
               
               Conread position:1-195
               
               
               Cow position:chrX:44660566-44660369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:1-206
               
               
               Cow position:chrX:20168581-20168792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):30, 100

               
               
               Conread position:1-213
               
               
               Cow position:chrX:28067873-28068084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):30, 187

               
               
               Conread position:1-214
               
               
               Cow position:chrX:6407569-6407785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):179, 51

               
               
               Conread position:1-221
               
               
               Cow position:chrX:4328160-4327941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):28, 102

               
               
               Conread position:1-222
               
               
               Cow position:chrX:20345476-20345697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):203, 20

               
               
               Conread position:1-222
               
               
               Cow position:chrX:20887616-20887395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):97, 122

               
               
               Conread position:1-222
               
               
               Cow position:chrX:34554746-34554977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:1-222
               
               
               Cow position:chrX:35658822-35659043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):205, 31

               
               
               Conread position:2-139
               
               
               Cow position:chrX:37129293-37129432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:2-166
               
               
               Cow position:chrX:4109208-4109374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:119
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:3-226
               
               
               Cow position:chrX:14925303-14925532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):163, 17

               
               
               Conread position:7-215
               
               
               Cow position:chrX:38094487-38094291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:7-222
               
               
               Cow position:chrX:26205417-26205206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):173, 111

               
               
               Conread position:8-166
               
               
               Cow position:chrX:31986542-31986383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):51, 104

               
               
               Conread position:8-174
               
               
               Cow position:chrX:2314587-2314421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:8-174
               
               
               Cow position:chrX:27075019-27074854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:117
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:8-175
               
               
               Cow position:chrX:46587854-46588018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:8-205
               
               
               Cow position:chrX:29601796-29601598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):172, 114

               
               
               Conread position:8-208
               
               
               Cow position:chrX:27261223-27261419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):34, 118

               
               
               Conread position:8-210
               
               
               Cow position:chrX:4632826-4632613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:8-212
               
               
               Cow position:chrX:4091956-4092165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):166, 0

               
               
               Conread position:8-215
               
               
               Cow position:chrX:19018799-19018583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):117, 201

               
               
               Conread position:8-215
               
               
               Cow position:chrX:42247150-42246947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:152
               
               
               Alignm E-value:8e-34
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:8-220
               
               
               Cow position:chrX:20339860-20339647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):158, 63

               
               
               Conread position:8-221
               
               
               Cow position:chrX:12290751-12290962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:143
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:8-222
               
               
               Cow position:chrX:24331808-24332019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):158, 164

               
               
               Conread position:8-255
               
               
               Cow position:chrX:42449982-42449729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):158, 212

               
               
               Conread position:13-206
               
               
               Cow position:chrX:42836218-42836407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:13-209
               
               
               Cow position:chrX:36283377-36283569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):79, 86

               
               
               Conread position:13-222
               
               
               Cow position:chrX:35885690-35885490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):112, 0

               
               
               Conread position:13-226
               
               
               Cow position:chrX:34441417-34441204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):188, 162

               
               
               Conread position:13-244
               
               
               Cow position:chrX:30962840-30962606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:13-248
               
               
               Cow position:chrX:43008646-43008882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):191, 0

               
               
               Conread position:14-213
               
               
               Cow position:chrX:27431880-27431680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):166, 111

               
               
               Conread position:14-215
               
               
               Cow position:chrX:34411884-34412096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:18-174
               
               
               Cow position:chrX:10415211-10415055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:20-174
               
               
               Cow position:chrX:34543828-34543983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:21-166
               
               
               Cow position:chrX:35681612-35681756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:108
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:21-170
               
               
               Cow position:chrX:42381067-42380917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):107, 0

               
               
               Conread position:21-212
               
               
               Cow position:chrX:21327958-21328157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:21-213
               
               
               Cow position:chrX:34532565-34532755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):149, 85

               
               
               Conread position:21-213
               
               
               Cow position:chrX:41453347-41453545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):155, 99

               
               
               Conread position:21-214
               
               
               Cow position:chrX:35409797-35409997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):155, 57

               
               
               Conread position:21-215
               
               
               Cow position:chrX:36975996-36976194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:135
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:21-220
               
               
               Cow position:chrX:5118453-5118258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:21-222
               
               
               Cow position:chrX:27446731-27446926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):184, 123

               
               
               Conread position:21-222
               
               
               Cow position:chrX:32877330-32877131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):109, 0

               
               
               Conread position:21-222
               
               
               Cow position:chrX:35985863-35986067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):102, 71

               
               
               Conread position:21-244
               
               
               Cow position:chrX:39180188-39179970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):175, 58

               
               
               Conread position:21-253
               
               
               Cow position:chrX:20583711-20583944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-31
               
               
               Alignm gaps (pig, cow):162, 101

               
               
               Conread position:24-166
               
               
               Cow position:chrX:4515739-4515877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):75, 44

               
               
               Conread position:24-197
               
               
               Cow position:chrX:32943028-32942852 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:34-178
               
               
               Cow position:chrX:6480538-6480394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-174
               
               
               Cow position:chrX:10237852-10237716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:37-174
               
               
               Cow position:chrX:17524323-17524186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:37-207
               
               
               Cow position:chrX:40680675-40680853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:37-208
               
               
               Cow position:chrX:11653831-11654000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):129, 88

               
               
               Conread position:37-220
               
               
               Cow position:chrX:27175059-27175240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-29
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:37-222
               
               
               Cow position:chrX:25815840-25815656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):88, 58

               
               
               Conread position:37-244
               
               
               Cow position:chrX:31489581-31489797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):65, 61

               
               
               Conread position:37-247
               
               
               Cow position:chrX:15545943-15546152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):129, 73

               
               
               Conread position:38-173
               
               
               Cow position:chrX:22552917-22552782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chrX:1122485-1122349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chrX:27705648-27705784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):128, 122

               
               
               Conread position:38-174
               
               
               Cow position:chrX:37867315-37867451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:100
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-174
               
               
               Cow position:chrX:44995560-44995697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:106
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:38-197
               
               
               Cow position:chrX:27270437-27270597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:123
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):35, 88

               
               
               Conread position:38-209
               
               
               Cow position:chrX:11589305-11589127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):142, 104

               
               
               Conread position:38-210
               
               
               Cow position:chrX:41027221-41027390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):141, 0

               
               
               Conread position:38-213
               
               
               Cow position:chrX:11656143-11656322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):138, 87

               
               
               Conread position:38-213
               
               
               Cow position:chrX:13177414-13177240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):138, 93

               
               
               Conread position:38-213
               
               
               Cow position:chrX:37867494-37867666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:38-214
               
               
               Cow position:chrX:26881503-26881323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):72, 125

               
               
               Conread position:38-215
               
               
               Cow position:chrX:17498384-17498561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:38-222
               
               
               Cow position:chrX:31983523-31983336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:134
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):89, 143

               
               
               Conread position:38-229
               
               
               Cow position:chrX:20957300-20957486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:39-166
               
               
               Cow position:chrX:34270624-34270750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):56, 68

               
               
               Conread position:39-169
               
               
               Cow position:chrX:296454-296584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:99
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-174
               
               
               Cow position:chrX:16770127-16770262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):59, 68

               
               
               Conread position:39-174
               
               
               Cow position:chrX:26493069-26493204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:103
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:39-197
               
               
               Cow position:chrX:34754113-34753954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:39-197
               
               
               Cow position:chrX:42086890-42087054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:39-209
               
               
               Cow position:chrX:32215291-32215469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:39-209
               
               
               Cow position:chrX:42760315-42760486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:39-210
               
               
               Cow position:chrX:41215385-41215553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:121
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):137, 0

               
               
               Conread position:39-212
               
               
               Cow position:chrX:36367872-36367693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):141, 167

               
               
               Conread position:39-213
               
               
               Cow position:chrX:34398721-34398547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-166
               
               
               Cow position:chrX:35276053-35276175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:93
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:44-174
               
               
               Cow position:chrX:29478792-29478919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:44-197
               
               
               Cow position:chrX:24633763-24633914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:44-208
               
               
               Cow position:chrX:33466692-33466862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):102, 74

               
               
               Conread position:44-210
               
               
               Cow position:chrX:25035314-25035141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:125
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):136, 156

               
               
               Conread position:44-215
               
               
               Cow position:chrX:35285241-35285422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:44-222
               
               
               Cow position:chrX:4559801-4559978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):161, 131

               
               
               Conread position:44-222
               
               
               Cow position:chrX:40556391-40556215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:132
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):46, 79

               
               
               Conread position:45-174
               
               
               Cow position:chrX:28106916-28107043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:98
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:46-166
               
               
               Cow position:chrX:33678403-33678281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:46-174
               
               
               Cow position:chrX:11813143-11813271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-174
               
               
               Cow position:chrX:37955917-37956045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:46-210
               
               
               Cow position:chrX:24365751-24365589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:46-212
               
               
               Cow position:chrX:41941693-41941868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-24
               
               
               Alignm gaps (pig, cow):134, 103

               
               
               Conread position:46-214
               
               
               Cow position:chrX:51831-51659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):134, 73

               
               
               Conread position:46-214
               
               
               Cow position:chrX:37749914-37749751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:128
               
               
               Alignm E-value:8e-23
               
               
               Alignm gaps (pig, cow):130, 76

               
               
               Conread position:46-220
               
               
               Cow position:chrX:32574387-32574561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):140, 97

               
               
               Conread position:46-223
               
               
               Cow position:chrX:13122008-13122198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:46-240
               
               
               Cow position:chrX:12095702-12095511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:47-222
               
               
               Cow position:chrX:39290430-39290596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:48-220
               
               
               Cow position:chrX:46909887-46910060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):126, 74

               
               
               Conread position:48-247
               
               
               Cow position:chrX:40336982-40337177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-27
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:51-197
               
               
               Cow position:chrX:30042016-30041873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):115, 71

               
               
               Conread position:51-214
               
               
               Cow position:chrX:4486949-4486784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 70

               
               
               Conread position:51-214
               
               
               Cow position:chrX:42506874-42506703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-22
               
               
               Alignm gaps (pig, cow):67, 158

               
               
               Conread position:52-211
               
               
               Cow position:chrX:30958806-30958971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:54-207
               
               
               Cow position:chrX:37717800-37717949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-25
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:57-213
               
               
               Cow position:chrX:21171-21325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:114
               
               
               Alignm E-value:6e-21
               
               
               Alignm gaps (pig, cow):138, 68

               
               
               Conread position:203-475
               
               
               Cow position:chrX:37811930-37812206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:7e-32
               
               
               Alignm gaps (pig, cow):137, 15