Cow genome map
| Conread name: | rtes03_h21.y1 |
| Conread position: | 1-523 |
| Cow position: | chr10:15741920-15742442 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 324 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 128, 138 |
| Conread position: | 27-523 |
| Cow position: | chr11:74360411-74359915 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 99, 125 |
| Conread position: | 1-545 |
| Cow position: | chr15:52710894-52710350 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 331 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 287, 297 |
| Conread position: | 27-469 |
| Cow position: | chr15:50130798-50131240 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 92-545 |
| Cow position: | chr15:50088513-50088063 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 276 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 172, 77 |
| Conread position: | 177-544 |
| Cow position: | chr15:50109476-50109109 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 115 |
| Conread position: | 208-545 |
| Cow position: | chr15:50175656-50175994 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 9, 92 |
| Conread position: | 138-544 |
| Cow position: | chr17:2463646-2463244 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 244 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 147, 163 |
| Conread position: | 56-542 |
| Cow position: | chr2:619990-620476 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 103, 90 |
| Conread position: | 137-544 |
| Cow position: | chr2:593569-593166 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 151, 98 |
| Conread position: | 335-523 |
| Cow position: | chr2:86493382-86493570 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 84, 97 |
| Conread position: | 23-523 |
| Cow position: | chr23:24610053-24609553 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 118, 125 |
| Conread position: | 17-544 |
| Cow position: | chr24:1943943-1944470 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 312 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 128, 112 |
| Conread position: | 27-545 |
| Cow position: | chr24:1857239-1856726 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 307 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 98, 120 |
| Conread position: | 1-232 |
| Cow position: | chr29:20016843-20017073 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 152, 48 |
| Conread position: | 1-235 |
| Cow position: | chr29:19989193-19989427 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-391 |
| Cow position: | chr29:19929350-19928960 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 318 |
| Conread position: | 1-543 |
| Cow position: | chr29:21273392-21272850 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 449 |
| Conread position: | 1-543 |
| Cow position: | chr29:21297451-21296909 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 447 |
| Conread position: | 1-544 |
| Cow position: | chr29:19951189-19950643 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 314 |
| Conread position: | 1-545 |
| Cow position: | chr29:18771730-18771189 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 331 |
| Conread position: | 1-545 |
| Cow position: | chr29:18777156-18776612 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 318 |
| Conread position: | 1-545 |
| Cow position: | chr29:19901871-19901327 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 302 |
| Conread position: | 1-545 |
| Cow position: | chr29:19914533-19913989 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 318 |
| Conread position: | 1-545 |
| Cow position: | chr29:19925921-19925385 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 98 |
| Conread position: | 1-545 |
| Cow position: | chr29:19939004-19938460 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 450 |
| Conread position: | 1-545 |
| Cow position: | chr29:19962328-19961786 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 37 |
| Conread position: | 1-545 |
| Cow position: | chr29:19971857-19971305 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 77 |
| Conread position: | 1-545 |
| Cow position: | chr29:20019663-20020206 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 112 |
| Conread position: | 1-545 |
| Cow position: | chr29:20030753-20031297 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 145 |
| Conread position: | 1-545 |
| Cow position: | chr29:20192691-20192150 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 112 |
| Conread position: | 1-545 |
| Cow position: | chr29:21176489-21177030 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 1-545 |
| Cow position: | chr29:21187716-21188257 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 1-545 |
| Cow position: | chr29:21202696-21202152 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 449 |
| Conread position: | 1-545 |
| Cow position: | chr29:21207284-21207825 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 0 |
| Conread position: | 1-545 |
| Cow position: | chr29:21230162-21229618 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 449 |
| Conread position: | 1-545 |
| Cow position: | chr29:21328566-21328022 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-545 |
| Cow position: | chr29:21346185-21345644 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 447 |
| Conread position: | 1-545 |
| Cow position: | chr29:21440616-21441157 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 450 |
| Conread position: | 1-545 |
| Cow position: | chr29:21464812-21464268 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-545 |
| Cow position: | chr29:21482774-21482233 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 331 |
| Conread position: | 1-545 |
| Cow position: | chr29:21488230-21487686 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-545 |
| Cow position: | chr29:19979046-19979583 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 4-545 |
| Cow position: | chr29:19992467-19993006 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 9 |
| Conread position: | 4-545 |
| Cow position: | chr29:20003236-20003775 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 9 |
| Conread position: | 4-545 |
| Cow position: | chr29:21248639-21249177 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 0 |
| Conread position: | 12-406 |
| Cow position: | chr29:18686002-18686393 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 129, 101 |
| Conread position: | 12-406 |
| Cow position: | chr29:18703975-18704366 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 129, 101 |
| Conread position: | 12-492 |
| Cow position: | chr29:18714609-18715086 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 300 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 129, 103 |
| Conread position: | 17-545 |
| Cow position: | chr29:18741067-18741595 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 275 |
| Conread position: | 19-406 |
| Cow position: | chr29:18725759-18726143 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 122, 94 |
| Conread position: | 26-523 |
| Cow position: | chr4:58713331-58712834 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 111, 129 |
| Conread position: | 170-485 |
| Cow position: | chr4:60691232-60690917 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 133 |
| Conread position: | 189-523 |
| Cow position: | chr4:58682710-58682376 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 148, 142 |
| Conread position: | 22-523 |
| Cow position: | chr7:27138252-27138753 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 297 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 313, 285 |
| Conread position: | 164-523 |
| Cow position: | chr7:8782251-8781892 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 136 |
| Conread position: | 1-486 |
| Cow position: | chr8:51835026-51834541 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 139, 128 |