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Cow genome map

           
Conread name:
           
rtes07_h2r1.y1
        

               
Conread position:
               
1-233
               

               
Cow position:
               
chr1:88532869-88532641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
200, 131
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr1:82408671-82408261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 59
               

               
Conread position:
               
1-489
               

               
Cow position:
               
chr1:101760408-101760904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
63, 57
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:42177128-42176646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 9
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr1:82346800-82346297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
380
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 19
               

               
Conread position:
               
5-161
               

               
Cow position:
               
chr1:84777542-84777699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
10-227
               

               
Cow position:
               
chr1:78359597-78359812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 139
               

               
Conread position:
               
10-396
               

               
Cow position:
               
chr1:54366521-54366143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 46
               

               
Conread position:
               
10-501
               

               
Cow position:
               
chr1:86608449-86608943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 57
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr1:76704102-76703628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 110
               

               
Conread position:
               
11-501
               

               
Cow position:
               
chr1:5318022-5318505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 47
               

               
Conread position:
               
12-229
               

               
Cow position:
               
chr1:72119165-72119384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
12-397
               

               
Cow position:
               
chr1:23049907-23050281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 106
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr1:20988015-20988507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
13-166
               

               
Cow position:
               
chr1:13879662-13879514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
13-398
               

               
Cow position:
               
chr1:84479070-84479426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 59
               

               
Conread position:
               
13-502
               

               
Cow position:
               
chr1:25887883-25887397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 331
               

               
Conread position:
               
16-335
               

               
Cow position:
               
chr1:69059690-69060010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 171
               

               
Conread position:
               
16-502
               

               
Cow position:
               
chr1:67903172-67902678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 29
               

               
Conread position:
               
16-502
               

               
Cow position:
               
chr1:72134686-72135179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 32
               

               
Conread position:
               
17-396
               

               
Cow position:
               
chr1:29032527-29032908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 139
               

               
Conread position:
               
18-256
               

               
Cow position:
               
chr1:31594214-31594452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
20-489
               

               
Cow position:
               
chr1:98662021-98661564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 49
               

               
Conread position:
               
27-502
               

               
Cow position:
               
chr1:58180484-58180021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 54
               

               
Conread position:
               
48-354
               

               
Cow position:
               
chr1:69288263-69287952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
179, 0
               

               
Conread position:
               
58-335
               

               
Cow position:
               
chr1:52323192-52323474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
64, 9
               

               
Conread position:
               
62-326
               

               
Cow position:
               
chr1:89478488-89478754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
60, 206
               

               
Conread position:
               
83-487
               

               
Cow position:
               
chr1:20396739-20397137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
92-501
               

               
Cow position:
               
chr1:61732386-61732799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
31, 91
               

               
Conread position:
               
136-501
               

               
Cow position:
               
chr1:53046573-53046204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 272
               

               
Conread position:
               
137-488
               

               
Cow position:
               
chr1:49974814-49974464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
58, 33
               

               
Conread position:
               
139-497
               

               
Cow position:
               
chr1:7145338-7144981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
41, 91
               

               
Conread position:
               
139-502
               

               
Cow position:
               
chr1:101149229-101149581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
90, 63
               

               
Conread position:
               
142-283
               

               
Cow position:
               
chr1:102555184-102555331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
143-502
               

               
Cow position:
               
chr1:34688734-34689090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
146-488
               

               
Cow position:
               
chr1:55324148-55323795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
8, 201
               

               
Conread position:
               
151-321
               

               
Cow position:
               
chr1:13878362-13878191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 102
               

               
Conread position:
               
151-502
               

               
Cow position:
               
chr1:56194548-56194193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
24, 185
               

               
Conread position:
               
152-500
               

               
Cow position:
               
chr1:63500842-63501197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
158-359
               

               
Cow position:
               
chr1:28722213-28722420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 174
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr1:33711458-33711799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 189
               

               
Conread position:
               
168-315
               

               
Cow position:
               
chr1:53364101-53364250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
39, 144
               

               
Conread position:
               
169-488
               

               
Cow position:
               
chr1:17942423-17942088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
34, 250
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr1:3934739-3934415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
23, 153
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr1:57367725-57367408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
21, 170
               

               
Conread position:
               
207-502
               

               
Cow position:
               
chr1:37420531-37420233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
19, 146
               

               
Conread position:
               
1-143
               

               
Cow position:
               
chr10:64466952-64466803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr10:2076100-2075857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
74, 207
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr10:3544267-3543996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
120, 78
               

               
Conread position:
               
1-329
               

               
Cow position:
               
chr10:38152169-38151847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
193, 82
               

               
Conread position:
               
1-389
               

               
Cow position:
               
chr10:28892165-28891776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 64
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr10:14886579-14886082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
371
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr10:24299594-24299085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 394
               

               
Conread position:
               
11-501
               

               
Cow position:
               
chr10:14950998-14951478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 40
               

               
Conread position:
               
12-374
               

               
Cow position:
               
chr10:20536712-20537072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 151
               

               
Conread position:
               
12-485
               

               
Cow position:
               
chr10:49309815-49310283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 350
               

               
Conread position:
               
12-501
               

               
Cow position:
               
chr10:42109023-42109494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
12-501
               

               
Cow position:
               
chr10:42747393-42747864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 32
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr10:15862994-15862536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
191, 114
               

               
Conread position:
               
13-501
               

               
Cow position:
               
chr10:38526002-38526492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
107, 87
               

               
Conread position:
               
16-267
               

               
Cow position:
               
chr10:38846690-38846946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
50-502
               

               
Cow position:
               
chr10:60488965-60489431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 138
               

               
Conread position:
               
68-272
               

               
Cow position:
               
chr10:42682811-42683017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 13
               

               
Conread position:
               
91-272
               

               
Cow position:
               
chr10:42663642-42663825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
30, 51
               

               
Conread position:
               
91-502
               

               
Cow position:
               
chr10:32063494-32063914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
31, 41
               

               
Conread position:
               
132-502
               

               
Cow position:
               
chr10:46190776-46191152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
71, 13
               

               
Conread position:
               
133-501
               

               
Cow position:
               
chr10:4499099-4499477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 57
               

               
Conread position:
               
139-481
               

               
Cow position:
               
chr10:2422377-2422024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
62, 20
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr10:21486326-21486678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 82
               

               
Conread position:
               
154-488
               

               
Cow position:
               
chr10:7283269-7282935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
8, 191
               

               
Conread position:
               
154-501
               

               
Cow position:
               
chr10:21901769-21901428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr10:25497779-25498117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 168
               

               
Conread position:
               
159-498
               

               
Cow position:
               
chr10:182961-183302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 19
               

               
Conread position:
               
171-500
               

               
Cow position:
               
chr10:34318822-34318497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 193
               

               
Conread position:
               
173-502
               

               
Cow position:
               
chr10:38345943-38345601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
22, 181
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr10:32650172-32650503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
21, 170
               

               
Conread position:
               
177-498
               

               
Cow position:
               
chr10:21382150-21382471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
64, 10
               

               
Conread position:
               
203-485
               

               
Cow position:
               
chr10:14859450-14859729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
121, 58
               

               
Conread position:
               
262-501
               

               
Cow position:
               
chr10:58378031-58377803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
309-502
               

               
Cow position:
               
chr10:38846952-38847136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr11:8249108-8248948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
124, 48
               

               
Conread position:
               
1-244
               

               
Cow position:
               
chr11:1601787-1602027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 22
               

               
Conread position:
               
2-146
               

               
Cow position:
               
chr11:17910526-17910382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
121, 32
               

               
Conread position:
               
10-451
               

               
Cow position:
               
chr11:28050864-28050412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
113, 35
               

               
Conread position:
               
11-268
               

               
Cow position:
               
chr11:31755729-31755466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
10, 25
               

               
Conread position:
               
12-253
               

               
Cow position:
               
chr11:7110970-7110725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
111, 77
               

               
Conread position:
               
12-384
               

               
Cow position:
               
chr11:32682584-32682960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 24
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr11:65162620-65162134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 75
               

               
Conread position:
               
13-232
               

               
Cow position:
               
chr11:11124376-11124595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
113, 21
               

               
Conread position:
               
13-500
               

               
Cow position:
               
chr11:3237468-3237943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 61
               

               
Conread position:
               
16-486
               

               
Cow position:
               
chr11:81853683-81853202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 405
               

               
Conread position:
               
16-502
               

               
Cow position:
               
chr11:49076728-49076262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 12
               

               
Conread position:
               
24-502
               

               
Cow position:
               
chr11:64355138-64355608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
101, 78
               

               
Conread position:
               
25-502
               

               
Cow position:
               
chr11:7686820-7687314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 112
               

               
Conread position:
               
33-498
               

               
Cow position:
               
chr11:87126790-87127240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 81
               

               
Conread position:
               
39-502
               

               
Cow position:
               
chr11:72017157-72017628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 25
               

               
Conread position:
               
58-363
               

               
Cow position:
               
chr11:8894930-8895251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
62, 113
               

               
Conread position:
               
59-502
               

               
Cow position:
               
chr11:44507142-44507573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
13, 33
               

               
Conread position:
               
69-500
               

               
Cow position:
               
chr11:25180065-25180478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 113
               

               
Conread position:
               
72-502
               

               
Cow position:
               
chr11:42428311-42428736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 39
               

               
Conread position:
               
91-358
               

               
Cow position:
               
chr11:59434177-59433904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
34, 155
               

               
Conread position:
               
91-500
               

               
Cow position:
               
chr11:21440616-21441021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
34, 112
               

               
Conread position:
               
93-418
               

               
Cow position:
               
chr11:25181823-25182154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
28, 41
               

               
Conread position:
               
95-487
               

               
Cow position:
               
chr11:62217062-62216667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
30, 53
               

               
Conread position:
               
114-501
               

               
Cow position:
               
chr11:72005059-72005440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
8, 23
               

               
Conread position:
               
128-299
               

               
Cow position:
               
chr11:17907602-17907435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
71, 94
               

               
Conread position:
               
139-501
               

               
Cow position:
               
chr11:43731469-43731825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
58, 142
               

               
Conread position:
               
147-485
               

               
Cow position:
               
chr11:72110917-72110576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
48, 197
               

               
Conread position:
               
148-502
               

               
Cow position:
               
chr11:27283017-27283387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
63, 158
               

               
Conread position:
               
149-487
               

               
Cow position:
               
chr11:7112492-7112843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 60
               

               
Conread position:
               
152-501
               

               
Cow position:
               
chr11:87171507-87171845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 31
               

               
Conread position:
               
158-362
               

               
Cow position:
               
chr11:25526654-25526865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 177
               

               
Conread position:
               
158-500
               

               
Cow position:
               
chr11:44496531-44496183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 146
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr11:8888088-8887750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 167
               

               
Conread position:
               
167-425
               

               
Cow position:
               
chr11:56178983-56179241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr11:53432702-53432369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
23, 172
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr11:58133425-58133744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 172
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr12:13950131-13949904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
200, 27
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr12:48403960-48404360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 22
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr12:16325956-16326426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 27
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr12:21499307-21499813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
133, 91
               

               
Conread position:
               
10-498
               

               
Cow position:
               
chr12:2840392-2839905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 11
               

               
Conread position:
               
13-501
               

               
Cow position:
               
chr12:3630403-3630877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
10, 70
               

               
Conread position:
               
16-498
               

               
Cow position:
               
chr12:347076-347531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
109, 12
               

               
Conread position:
               
24-219
               

               
Cow position:
               
chr12:1994973-1994778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 11
               

               
Conread position:
               
25-358
               

               
Cow position:
               
chr12:22025986-22026322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
121, 97
               

               
Conread position:
               
37-500
               

               
Cow position:
               
chr12:1867690-1868150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 118
               

               
Conread position:
               
45-388
               

               
Cow position:
               
chr12:11559698-11559369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
156, 74
               

               
Conread position:
               
94-275
               

               
Cow position:
               
chr12:19868003-19868187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
23, 34
               

               
Conread position:
               
154-438
               

               
Cow position:
               
chr12:22121059-22121349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 251
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr13:41606468-41606745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
196, 19
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr13:47859293-47859789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
390
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 53
               

               
Conread position:
               
2-501
               

               
Cow position:
               
chr13:15081202-15080707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
216, 102
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr13:34768229-34767758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
16-313
               

               
Cow position:
               
chr13:5282834-5283129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
66, 85
               

               
Conread position:
               
58-488
               

               
Cow position:
               
chr13:48356348-48356785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 139
               

               
Conread position:
               
91-374
               

               
Cow position:
               
chr13:19437749-19438031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
111-498
               

               
Cow position:
               
chr13:33279264-33278880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
140-501
               

               
Cow position:
               
chr13:60704393-60704056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
145-488
               

               
Cow position:
               
chr13:3276272-3276611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
58, 201
               

               
Conread position:
               
145-502
               

               
Cow position:
               
chr13:46733223-46732878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 89
               

               
Conread position:
               
155-502
               

               
Cow position:
               
chr13:20543238-20542895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
158-449
               

               
Cow position:
               
chr13:2231813-2232107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
40, 182
               

               
Conread position:
               
171-502
               

               
Cow position:
               
chr13:62328438-62328114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 179
               

               
Conread position:
               
202-502
               

               
Cow position:
               
chr13:3655143-3654840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
45, 142
               

               
Conread position:
               
202-502
               

               
Cow position:
               
chr13:33825564-33825271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
38, 122
               

               
Conread position:
               
208-492
               

               
Cow position:
               
chr13:30063337-30063614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 156
               

               
Conread position:
               
263-502
               

               
Cow position:
               
chr13:41606948-41607176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr14:31885863-31886099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
90, 60
               

               
Conread position:
               
1-259
               

               
Cow position:
               
chr14:25439648-25439390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 77
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr14:11467468-11467941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 90
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr14:14310206-14309722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr14:47920882-47921353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
111, 74
               

               
Conread position:
               
12-345
               

               
Cow position:
               
chr14:23530549-23530218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
124, 79
               

               
Conread position:
               
12-498
               

               
Cow position:
               
chr14:44579807-44580282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 98
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr14:44781070-44780569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr14:44783410-44782909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 54
               

               
Conread position:
               
13-501
               

               
Cow position:
               
chr14:14423154-14422666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 88
               

               
Conread position:
               
16-180
               

               
Cow position:
               
chr14:41406625-41406789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
105, 31
               

               
Conread position:
               
16-338
               

               
Cow position:
               
chr14:36184841-36184518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 274
               

               
Conread position:
               
29-487
               

               
Cow position:
               
chr14:23261063-23260605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
92, 53
               

               
Conread position:
               
42-502
               

               
Cow position:
               
chr14:44616200-44616636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
161, 55
               

               
Conread position:
               
58-502
               

               
Cow position:
               
chr14:35928081-35928524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 103
               

               
Conread position:
               
79-338
               

               
Cow position:
               
chr14:49045765-49046034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
38, 236
               

               
Conread position:
               
100-502
               

               
Cow position:
               
chr14:41406786-41407204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
21, 78
               

               
Conread position:
               
139-494
               

               
Cow position:
               
chr14:47588858-47589212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
62, 109
               

               
Conread position:
               
154-502
               

               
Cow position:
               
chr14:22018388-22018744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
16, 72
               

               
Conread position:
               
156-451
               

               
Cow position:
               
chr14:44675414-44675703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
158-480
               

               
Cow position:
               
chr14:35422914-35423220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 53
               

               
Conread position:
               
162-502
               

               
Cow position:
               
chr14:31607907-31607578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 75
               

               
Conread position:
               
172-488
               

               
Cow position:
               
chr14:13272263-13272591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
24, 184
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr14:19329255-19328938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
21, 170
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr14:17684414-17684741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
21, 161
               

               
Conread position:
               
243-498
               

               
Cow position:
               
chr14:31886572-31886816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 24
               

               
Conread position:
               
350-502
               

               
Cow position:
               
chr14:40170486-40170337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-475
               

               
Cow position:
               
chr15:45885661-45886128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 89
               

               
Conread position:
               
1-498
               

               
Cow position:
               
chr15:12613915-12614413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 103
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr15:40104299-40104794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 6
               

               
Conread position:
               
3-278
               

               
Cow position:
               
chr15:17683860-17683581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 64
               

               
Conread position:
               
3-498
               

               
Cow position:
               
chr15:1662241-1662733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 26
               

               
Conread position:
               
8-344
               

               
Cow position:
               
chr15:1236272-1236616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
10-489
               

               
Cow position:
               
chr15:6327274-6326828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
58, 47
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr15:10479839-10479350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 163
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr15:11299845-11299366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 153
               

               
Conread position:
               
12-219
               

               
Cow position:
               
chr15:684564-684772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
12-266
               

               
Cow position:
               
chr15:16539937-16540181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
186, 58
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr15:4631072-4630570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
16-321
               

               
Cow position:
               
chr15:12364255-12364562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
105, 116
               

               
Conread position:
               
17-281
               

               
Cow position:
               
chr15:24715017-24715280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
103, 94
               

               
Conread position:
               
21-502
               

               
Cow position:
               
chr15:21816885-21816397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 144
               

               
Conread position:
               
25-502
               

               
Cow position:
               
chr15:323788-324270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 146
               

               
Conread position:
               
36-502
               

               
Cow position:
               
chr15:32605944-32605487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 28
               

               
Conread position:
               
41-486
               

               
Cow position:
               
chr15:36627730-36627276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 65
               

               
Conread position:
               
42-238
               

               
Cow position:
               
chr15:3845267-3845071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
77, 98
               

               
Conread position:
               
59-502
               

               
Cow position:
               
chr15:15266894-15266442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 52
               

               
Conread position:
               
64-502
               

               
Cow position:
               
chr15:21447977-21448418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 18
               

               
Conread position:
               
81-283
               

               
Cow position:
               
chr15:51799401-51799609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
89-498
               

               
Cow position:
               
chr15:7540905-7541316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 275
               

               
Conread position:
               
91-492
               

               
Cow position:
               
chr15:17219914-17219532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
31, 78
               

               
Conread position:
               
91-501
               

               
Cow position:
               
chr15:7927566-7927973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
113, 29
               

               
Conread position:
               
100-450
               

               
Cow position:
               
chr15:10576363-10576701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 95
               

               
Conread position:
               
124-397
               

               
Cow position:
               
chr15:16506115-16506402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
85, 194
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chr15:51215572-51215937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
141-502
               

               
Cow position:
               
chr15:15348137-15347777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
142-502
               

               
Cow position:
               
chr15:52635140-52635509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 46
               

               
Conread position:
               
147-502
               

               
Cow position:
               
chr15:35681662-35681313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
62, 183
               

               
Conread position:
               
150-485
               

               
Cow position:
               
chr15:525860-525526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
27, 154
               

               
Conread position:
               
150-498
               

               
Cow position:
               
chr15:2006533-2006879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
151-488
               

               
Cow position:
               
chr15:21667029-21666690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
44, 183
               

               
Conread position:
               
154-486
               

               
Cow position:
               
chr15:6387308-6386966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
154-488
               

               
Cow position:
               
chr15:24793055-24793386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
49, 80
               

               
Conread position:
               
154-502
               

               
Cow position:
               
chr15:32680570-32680201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 129
               

               
Conread position:
               
156-488
               

               
Cow position:
               
chr15:35649206-35648885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
47, 11
               

               
Conread position:
               
158-375
               

               
Cow position:
               
chr15:21960530-21960753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
45, 177
               

               
Conread position:
               
158-480
               

               
Cow position:
               
chr15:53338048-53338384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 260
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr15:370685-370321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr15:10788083-10787746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
40, 159
               

               
Conread position:
               
164-502
               

               
Cow position:
               
chr15:35734468-35734808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
21, 48
               

               
Conread position:
               
174-485
               

               
Cow position:
               
chr15:6156949-6156634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr15:7933003-7933307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
31, 76
               

               
Conread position:
               
208-502
               

               
Cow position:
               
chr15:685211-685508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
285-501
               

               
Cow position:
               
chr15:17788013-17787802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 39
               

               
Conread position:
               
285-502
               

               
Cow position:
               
chr15:17683069-17682852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 28
               

               
Conread position:
               
361-502
               

               
Cow position:
               
chr15:3902963-3903108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr16:9929072-9929552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
126, 55
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr16:29981761-29982273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 86
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr16:44964552-44965046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
397
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 51
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chr16:52816559-52816181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
84, 74
               

               
Conread position:
               
10-485
               

               
Cow position:
               
chr16:5588701-5589180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 48
               

               
Conread position:
               
10-501
               

               
Cow position:
               
chr16:16029278-16029761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 326
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr16:14422237-14422713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
162, 6
               

               
Conread position:
               
12-198
               

               
Cow position:
               
chr16:31717455-31717268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
12-354
               

               
Cow position:
               
chr16:44389027-44388678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
110, 132
               

               
Conread position:
               
12-399
               

               
Cow position:
               
chr16:49956006-49955622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 140
               

               
Conread position:
               
12-484
               

               
Cow position:
               
chr16:334510-334968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
330
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 22
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr16:5647750-5648236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
20-370
               

               
Cow position:
               
chr16:13650886-13650530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 87
               

               
Conread position:
               
22-502
               

               
Cow position:
               
chr16:36233086-36232601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 78
               

               
Conread position:
               
40-183
               

               
Cow position:
               
chr16:20753295-20753159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
79, 43
               

               
Conread position:
               
45-368
               

               
Cow position:
               
chr16:47561967-47562285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
56, 210
               

               
Conread position:
               
62-256
               

               
Cow position:
               
chr16:45568420-45568617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
61, 15
               

               
Conread position:
               
81-501
               

               
Cow position:
               
chr16:51685027-51685445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
31, 25
               

               
Conread position:
               
81-502
               

               
Cow position:
               
chr16:32934712-32935145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
41, 56
               

               
Conread position:
               
84-500
               

               
Cow position:
               
chr16:40887673-40887267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
91-374
               

               
Cow position:
               
chr16:18209260-18208971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
32, 239
               

               
Conread position:
               
92-500
               

               
Cow position:
               
chr16:55112265-55111849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
146-502
               

               
Cow position:
               
chr16:29031556-29031913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
57, 262
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr16:49236473-49236116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
111, 236
               

               
Conread position:
               
158-315
               

               
Cow position:
               
chr16:28234002-28233850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
45, 76
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr16:19714185-19713851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 164
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr16:2484471-2484154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
22, 170
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr16:16687536-16687864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 237
               

               
Conread position:
               
175-502
               

               
Cow position:
               
chr16:39818302-39818621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
28, 150
               

               
Conread position:
               
193-502
               

               
Cow position:
               
chr16:54647030-54647329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
11, 136
               

               
Conread position:
               
334-502
               

               
Cow position:
               
chr16:31376392-31376230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
1-498
               

               
Cow position:
               
chr17:153386-152887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 232
               

               
Conread position:
               
1-499
               

               
Cow position:
               
chr17:2587392-2587892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 196
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr17:2146301-2146785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
201, 57
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr17:18302694-18302199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 34
               

               
Conread position:
               
19-502
               

               
Cow position:
               
chr17:31200985-31200493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 72
               

               
Conread position:
               
24-456
               

               
Cow position:
               
chr17:42263656-42264081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
60-502
               

               
Cow position:
               
chr17:4080773-4081225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 353
               

               
Conread position:
               
63-399
               

               
Cow position:
               
chr17:3694547-3694196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
59, 18
               

               
Conread position:
               
101-488
               

               
Cow position:
               
chr17:20400849-20401233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
20, 133
               

               
Conread position:
               
117-405
               

               
Cow position:
               
chr17:20024208-20024491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
123-502
               

               
Cow position:
               
chr17:12671133-12670758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
140, 41
               

               
Conread position:
               
137-485
               

               
Cow position:
               
chr17:15322043-15322387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
58, 35
               

               
Conread position:
               
138-461
               

               
Cow position:
               
chr17:1659640-1659318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
61, 32
               

               
Conread position:
               
139-502
               

               
Cow position:
               
chr17:2286597-2286950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
64, 175
               

               
Conread position:
               
156-489
               

               
Cow position:
               
chr17:6002777-6002453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
47, 56
               

               
Conread position:
               
304-501
               

               
Cow position:
               
chr17:3710817-3710625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
7-501
               

               
Cow position:
               
chr18:29762767-29763266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
514
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 15
               

               
Conread position:
               
10-300
               

               
Cow position:
               
chr18:42072812-42072515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 89
               

               
Conread position:
               
11-398
               

               
Cow position:
               
chr18:16876551-16876926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 67
               

               
Conread position:
               
12-488
               

               
Cow position:
               
chr18:43200081-43200561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 153
               

               
Conread position:
               
16-302
               

               
Cow position:
               
chr18:5979942-5980230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 36
               

               
Conread position:
               
18-376
               

               
Cow position:
               
chr18:18896860-18897220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
31-488
               

               
Cow position:
               
chr18:35287580-35288028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
91, 67
               

               
Conread position:
               
31-502
               

               
Cow position:
               
chr18:45958006-45958482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 344
               

               
Conread position:
               
60-289
               

               
Cow position:
               
chr18:2887669-2887440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
142, 32
               

               
Conread position:
               
204-501
               

               
Cow position:
               
chr18:54268052-54268337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
238-502
               

               
Cow position:
               
chr18:51480358-51480621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
24, 102
               

               
Conread position:
               
251-501
               

               
Cow position:
               
chr18:42245014-42244769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
13, 117
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr19:8230036-8229789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
1-474
               

               
Cow position:
               
chr19:1492752-1492286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
200, 11
               

               
Conread position:
               
1-498
               

               
Cow position:
               
chr19:42649779-42649286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 119
               

               
Conread position:
               
11-488
               

               
Cow position:
               
chr19:562403-561932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 58
               

               
Conread position:
               
12-220
               

               
Cow position:
               
chr19:360224-360017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
110, 22
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr19:6552706-6553191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 54
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr19:20124955-20125412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 11
               

               
Conread position:
               
30-395
               

               
Cow position:
               
chr19:35316392-35316044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
51, 34
               

               
Conread position:
               
41-273
               

               
Cow position:
               
chr19:30754242-30754472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
58-472
               

               
Cow position:
               
chr19:32224080-32223655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 53
               

               
Conread position:
               
73-436
               

               
Cow position:
               
chr19:188849-189209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
48, 72
               

               
Conread position:
               
104-502
               

               
Cow position:
               
chr19:36476745-36477146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 208
               

               
Conread position:
               
106-425
               

               
Cow position:
               
chr19:15952662-15952974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 25
               

               
Conread position:
               
139-502
               

               
Cow position:
               
chr19:4252929-4252572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
64, 186
               

               
Conread position:
               
158-488
               

               
Cow position:
               
chr19:801442-801762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 171
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr19:33858-34208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
40, 219
               

               
Conread position:
               
166-488
               

               
Cow position:
               
chr19:40852983-40852659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 29
               

               
Conread position:
               
168-502
               

               
Cow position:
               
chr19:35376016-35376340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
59, 70
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr19:203421-203734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
88, 166
               

               
Conread position:
               
232-502
               

               
Cow position:
               
chr19:359970-359703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
32, 75
               

               
Conread position:
               
261-502
               

               
Cow position:
               
chr19:30754716-30754959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
64, 141
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr2:769631-769362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
75, 87
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr2:7210157-7210658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 147
               

               
Conread position:
               
3-502
               

               
Cow position:
               
chr2:73190588-73191068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 268
               

               
Conread position:
               
7-237
               

               
Cow position:
               
chr2:74392775-74392544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
114, 22
               

               
Conread position:
               
10-500
               

               
Cow position:
               
chr2:46466747-46466271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 58
               

               
Conread position:
               
12-201
               

               
Cow position:
               
chr2:32434952-32434763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr2:42334524-42334039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 22
               

               
Conread position:
               
13-498
               

               
Cow position:
               
chr2:20904371-20903899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 51
               

               
Conread position:
               
13-502
               

               
Cow position:
               
chr2:85069506-85069009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
350
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 125
               

               
Conread position:
               
18-398
               

               
Cow position:
               
chr2:3438827-3439197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
20-183
               

               
Cow position:
               
chr2:37791750-37791592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
100, 130
               

               
Conread position:
               
32-486
               

               
Cow position:
               
chr2:54650028-54649588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
34-498
               

               
Cow position:
               
chr2:75677103-75676641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 25
               

               
Conread position:
               
35-502
               

               
Cow position:
               
chr2:28746282-28746723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
471
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 38
               

               
Conread position:
               
41-500
               

               
Cow position:
               
chr2:32388322-32388794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 376
               

               
Conread position:
               
58-502
               

               
Cow position:
               
chr2:782951-782501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
456
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
63-426
               

               
Cow position:
               
chr2:25244162-25244527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
78-502
               

               
Cow position:
               
chr2:63293766-63293346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 93
               

               
Conread position:
               
91-370
               

               
Cow position:
               
chr2:3446491-3446777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
91-502
               

               
Cow position:
               
chr2:3729562-3729968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 222
               

               
Conread position:
               
101-501
               

               
Cow position:
               
chr2:50321134-50321525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
103, 26
               

               
Conread position:
               
105-501
               

               
Cow position:
               
chr2:38589014-38589412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 28
               

               
Conread position:
               
108-259
               

               
Cow position:
               
chr2:3837738-3837591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
145-488
               

               
Cow position:
               
chr2:7900925-7901286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
8, 272
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr2:202787-202416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
56, 266
               

               
Conread position:
               
151-488
               

               
Cow position:
               
chr2:36032192-36031843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
16, 265
               

               
Conread position:
               
154-502
               

               
Cow position:
               
chr2:16288125-16288483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
49, 260
               

               
Conread position:
               
154-502
               

               
Cow position:
               
chr2:44992408-44992052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
53, 22
               

               
Conread position:
               
157-502
               

               
Cow position:
               
chr2:8117120-8117468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 177
               

               
Conread position:
               
160-502
               

               
Cow position:
               
chr2:2102561-2102225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
43, 165
               

               
Conread position:
               
167-488
               

               
Cow position:
               
chr2:75250681-75250986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
36, 67
               

               
Conread position:
               
167-502
               

               
Cow position:
               
chr2:32459126-32458782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
36, 135
               

               
Conread position:
               
168-488
               

               
Cow position:
               
chr2:1673754-1673433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
36, 133
               

               
Conread position:
               
172-488
               

               
Cow position:
               
chr2:6959637-6959959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
24, 241
               

               
Conread position:
               
172-493
               

               
Cow position:
               
chr2:22076686-22077013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
61, 22
               

               
Conread position:
               
174-500
               

               
Cow position:
               
chr2:6877397-6877721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 67
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr2:28651328-28650997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
21, 138
               

               
Conread position:
               
226-502
               

               
Cow position:
               
chr2:74392417-74392137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
97, 30
               

               
Conread position:
               
262-473
               

               
Cow position:
               
chr2:30388238-30388439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
301-500
               

               
Cow position:
               
chr2:769354-769156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
153, 40
               

               
Conread position:
               
9-293
               

               
Cow position:
               
chr20:35974604-35974319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 83
               

               
Conread position:
               
10-501
               

               
Cow position:
               
chr20:20756172-20755691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 48
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr20:22205786-22206275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 24
               

               
Conread position:
               
12-268
               

               
Cow position:
               
chr20:24516125-24516381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
197, 143
               

               
Conread position:
               
13-484
               

               
Cow position:
               
chr20:22718406-22717955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
476
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
16-445
               

               
Cow position:
               
chr20:13665888-13665481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
105, 29
               

               
Conread position:
               
58-502
               

               
Cow position:
               
chr20:28593029-28593489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
470
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 109
               

               
Conread position:
               
59-472
               

               
Cow position:
               
chr20:28475645-28476046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 25
               

               
Conread position:
               
76-501
               

               
Cow position:
               
chr20:29572871-29572445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
44, 25
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr20:37578778-37579189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 232
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr20:2676464-2676861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
32, 52
               

               
Conread position:
               
94-491
               

               
Cow position:
               
chr20:2792042-2791618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
31, 285
               

               
Conread position:
               
123-279
               

               
Cow position:
               
chr20:31381542-31381393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
80, 69
               

               
Conread position:
               
123-502
               

               
Cow position:
               
chr20:31379469-31379128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
78, 105
               

               
Conread position:
               
152-444
               

               
Cow position:
               
chr20:7086866-7086578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
22, 91
               

               
Conread position:
               
154-488
               

               
Cow position:
               
chr20:21392966-21393301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 26
               

               
Conread position:
               
154-502
               

               
Cow position:
               
chr20:15064139-15064507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
173-488
               

               
Cow position:
               
chr20:5575114-5575424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
29, 11
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr20:5534359-5534684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
21, 174
               

               
Conread position:
               
309-501
               

               
Cow position:
               
chr20:20905629-20905440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr21:33754663-33755152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 12
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr21:35089054-35089564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
384
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 90
               

               
Conread position:
               
9-502
               

               
Cow position:
               
chr21:20745349-20744879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 24
               

               
Conread position:
               
10-256
               

               
Cow position:
               
chr21:28839123-28838874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 60
               

               
Conread position:
               
19-421
               

               
Cow position:
               
chr21:21948440-21948038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
21-487
               

               
Cow position:
               
chr21:25993215-25992772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 74
               

               
Conread position:
               
29-335
               

               
Cow position:
               
chr21:26617235-26616937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6.99949e-42
               

               
Alignm gaps (pig, cow):
               
34, 155
               

               
Conread position:
               
32-354
               

               
Cow position:
               
chr21:36713813-36714128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 101
               

               
Conread position:
               
41-214
               

               
Cow position:
               
chr21:28873997-28874170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
81, 163
               

               
Conread position:
               
58-326
               

               
Cow position:
               
chr21:18820686-18820416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
64, 23
               

               
Conread position:
               
88-489
               

               
Cow position:
               
chr21:444585-444985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
95-345
               

               
Cow position:
               
chr21:46908632-46908380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
127-450
               

               
Cow position:
               
chr21:11053083-11052758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
74, 196
               

               
Conread position:
               
139-502
               

               
Cow position:
               
chr21:34259707-34259351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
65, 186
               

               
Conread position:
               
142-339
               

               
Cow position:
               
chr21:25286112-25286310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
83, 96
               

               
Conread position:
               
152-487
               

               
Cow position:
               
chr21:47938998-47939325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
51, 172
               

               
Conread position:
               
158-487
               

               
Cow position:
               
chr21:2542364-2542026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 216
               

               
Conread position:
               
159-502
               

               
Cow position:
               
chr21:29086024-29086353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
44, 119
               

               
Conread position:
               
172-501
               

               
Cow position:
               
chr21:1292653-1292315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
31, 241
               

               
Conread position:
               
210-479
               

               
Cow position:
               
chr21:2521339-2521615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
298-492
               

               
Cow position:
               
chr21:34055252-34055063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
337-500
               

               
Cow position:
               
chr21:23860481-23860642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
13, 64
               

               
Conread position:
               
10-272
               

               
Cow position:
               
chr22:27334672-27334928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
109, 8
               

               
Conread position:
               
12-498
               

               
Cow position:
               
chr22:1046597-1047068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 22
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr22:7276718-7277211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 229
               

               
Conread position:
               
16-321
               

               
Cow position:
               
chr22:36272709-36273018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
17-502
               

               
Cow position:
               
chr22:308949-309411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 47
               

               
Conread position:
               
18-271
               

               
Cow position:
               
chr22:26242497-26242755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 135
               

               
Conread position:
               
19-375
               

               
Cow position:
               
chr22:36266599-36266958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 222
               

               
Conread position:
               
20-501
               

               
Cow position:
               
chr22:33350382-33350854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
361
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 35
               

               
Conread position:
               
128-259
               

               
Cow position:
               
chr22:19075274-19075144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 100
               

               
Conread position:
               
154-489
               

               
Cow position:
               
chr22:32348611-32348291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
49, 32
               

               
Conread position:
               
159-488
               

               
Cow position:
               
chr22:39882816-39882498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
165-501
               

               
Cow position:
               
chr22:871483-871148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
39, 6
               

               
Conread position:
               
172-485
               

               
Cow position:
               
chr22:42990532-42990843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
23, 133
               

               
Conread position:
               
172-488
               

               
Cow position:
               
chr22:27387035-27386712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
23, 176
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr22:3307364-3307030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
31, 17
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr22:19144340-19144023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 170
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr22:561343-561011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
6, 172
               

               
Conread position:
               
212-502
               

               
Cow position:
               
chr22:44474710-44475002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 154
               

               
Conread position:
               
1-488
               

               
Cow position:
               
chr23:16617650-16617161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 134
               

               
Conread position:
               
11-408
               

               
Cow position:
               
chr23:29154144-29153755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 35
               

               
Conread position:
               
11-487
               

               
Cow position:
               
chr23:2339600-2340080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
490
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 85
               

               
Conread position:
               
12-311
               

               
Cow position:
               
chr23:22879969-22879663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
12-407
               

               
Cow position:
               
chr23:16482349-16481956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 76
               

               
Conread position:
               
16-296
               

               
Cow position:
               
chr23:7749372-7749650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 136
               

               
Conread position:
               
16-492
               

               
Cow position:
               
chr23:3491308-3490813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
81-501
               

               
Cow position:
               
chr23:19333142-19332713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
88-374
               

               
Cow position:
               
chr23:2768927-2768642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
37, 85
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chr23:15176384-15176740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
93, 23
               

               
Conread position:
               
150-488
               

               
Cow position:
               
chr23:27398841-27399178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
25, 32
               

               
Conread position:
               
152-501
               

               
Cow position:
               
chr23:19017057-19017397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
155-502
               

               
Cow position:
               
chr23:4815422-4815763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
40, 81
               

               
Conread position:
               
158-375
               

               
Cow position:
               
chr23:5875407-5875186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
45, 145
               

               
Conread position:
               
158-488
               

               
Cow position:
               
chr23:3012982-3013306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
45, 157
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr23:989286-988952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
27, 167
               

               
Conread position:
               
160-501
               

               
Cow position:
               
chr23:34174542-34174876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
27, 56
               

               
Conread position:
               
163-502
               

               
Cow position:
               
chr23:1025707-1025362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
6, 151
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr23:2756860-2757190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr23:15524981-15525288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
334-502
               

               
Cow position:
               
chr23:22876104-22875940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr24:12567513-12567852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
226, 36
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr24:32330615-32331120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr24:38635027-38635522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 81
               

               
Conread position:
               
17-500
               

               
Cow position:
               
chr24:17304309-17303798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
13, 52
               

               
Conread position:
               
18-502
               

               
Cow position:
               
chr24:35842295-35841833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
342
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 109
               

               
Conread position:
               
21-502
               

               
Cow position:
               
chr24:12289432-12288945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 26
               

               
Conread position:
               
36-335
               

               
Cow position:
               
chr24:36706933-36707237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
37-487
               

               
Cow position:
               
chr24:1446885-1447337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 45
               

               
Conread position:
               
45-289
               

               
Cow position:
               
chr24:14283265-14283018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 111
               

               
Conread position:
               
77-354
               

               
Cow position:
               
chr24:13318613-13318894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
51, 14
               

               
Conread position:
               
85-488
               

               
Cow position:
               
chr24:6057039-6057439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
36, 13
               

               
Conread position:
               
92-500
               

               
Cow position:
               
chr24:32126125-32125724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
30, 10
               

               
Conread position:
               
137-501
               

               
Cow position:
               
chr24:6351604-6351966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 8
               

               
Conread position:
               
147-484
               

               
Cow position:
               
chr24:14385193-14384853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
56, 198
               

               
Conread position:
               
158-488
               

               
Cow position:
               
chr24:12236479-12236822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
45, 238
               

               
Conread position:
               
158-488
               

               
Cow position:
               
chr24:12798330-12797991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
24, 28
               

               
Conread position:
               
162-500
               

               
Cow position:
               
chr24:6512121-6511789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
5, 80
               

               
Conread position:
               
172-488
               

               
Cow position:
               
chr24:15392869-15392536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
31, 245
               

               
Conread position:
               
307-488
               

               
Cow position:
               
chr24:30117094-30117273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
10-374
               

               
Cow position:
               
chr25:18420897-18421266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
111, 42
               

               
Conread position:
               
10-489
               

               
Cow position:
               
chr25:11934316-11933799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
366
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 69
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr25:29357142-29357631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
363
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 48
               

               
Conread position:
               
12-258
               

               
Cow position:
               
chr25:12836083-12835836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
109, 14
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr25:23346457-23345961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 301
               

               
Conread position:
               
16-144
               

               
Cow position:
               
chr25:33242907-33243035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
103, 12
               

               
Conread position:
               
22-489
               

               
Cow position:
               
chr25:21901345-21901800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 160
               

               
Conread position:
               
29-501
               

               
Cow position:
               
chr25:18256110-18255627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
64, 134
               

               
Conread position:
               
92-501
               

               
Cow position:
               
chr25:19289027-19288614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
33, 158
               

               
Conread position:
               
113-502
               

               
Cow position:
               
chr25:18092353-18092751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
134-502
               

               
Cow position:
               
chr25:12760245-12759863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 132
               

               
Conread position:
               
158-487
               

               
Cow position:
               
chr25:18302158-18302489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
46, 177
               

               
Conread position:
               
162-501
               

               
Cow position:
               
chr25:20493754-20494091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 89
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr25:13780436-13780767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 172
               

               
Conread position:
               
10-389
               

               
Cow position:
               
chr26:16903903-16904280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
12-419
               

               
Cow position:
               
chr26:12664880-12665299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
13-244
               

               
Cow position:
               
chr26:8083210-8083439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
110, 53
               

               
Conread position:
               
13-399
               

               
Cow position:
               
chr26:6601240-6601629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 15
               

               
Conread position:
               
16-425
               

               
Cow position:
               
chr26:35297384-35296984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
56, 136
               

               
Conread position:
               
60-488
               

               
Cow position:
               
chr26:9851339-9850910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 327
               

               
Conread position:
               
60-488
               

               
Cow position:
               
chr26:9854803-9854374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 327
               

               
Conread position:
               
91-262
               

               
Cow position:
               
chr26:12582435-12582267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
122-502
               

               
Cow position:
               
chr26:28424559-28424179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
75, 50
               

               
Conread position:
               
154-488
               

               
Cow position:
               
chr26:34012418-34012757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 255
               

               
Conread position:
               
158-489
               

               
Cow position:
               
chr26:30675537-30675216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
164-485
               

               
Cow position:
               
chr26:9846730-9846400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
43, 249
               

               
Conread position:
               
208-502
               

               
Cow position:
               
chr26:20262332-20262608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-37
               

               
Alignm gaps (pig, cow):
               
54, 24
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr27:3997185-3996844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
120, 62
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr27:27198656-27198241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 50
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr27:6006204-6006695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 67
               

               
Conread position:
               
11-195
               

               
Cow position:
               
chr27:26035265-26035081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 58
               

               
Conread position:
               
67-502
               

               
Cow position:
               
chr27:25999798-25999359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 26
               

               
Conread position:
               
88-396
               

               
Cow position:
               
chr27:11963044-11963362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
91-374
               

               
Cow position:
               
chr27:27413866-27414152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
34, 113
               

               
Conread position:
               
91-501
               

               
Cow position:
               
chr27:21288942-21288523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 75
               

               
Conread position:
               
155-502
               

               
Cow position:
               
chr27:25116589-25116942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
48, 29
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr28:26007276-26007763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 101
               

               
Conread position:
               
12-250
               

               
Cow position:
               
chr28:22812135-22812367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 40
               

               
Conread position:
               
18-370
               

               
Cow position:
               
chr28:13721213-13721562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 40
               

               
Conread position:
               
18-502
               

               
Cow position:
               
chr28:10464597-10464112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 57
               

               
Conread position:
               
24-227
               

               
Cow position:
               
chr28:22544330-22544534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
99, 82
               

               
Conread position:
               
30-500
               

               
Cow position:
               
chr28:6658072-6657611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
478
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 74
               

               
Conread position:
               
31-319
               

               
Cow position:
               
chr28:25785177-25785450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
91, 71
               

               
Conread position:
               
42-502
               

               
Cow position:
               
chr28:22827332-22827797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 36
               

               
Conread position:
               
48-293
               

               
Cow position:
               
chr28:12649572-12649321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
71, 12
               

               
Conread position:
               
88-312
               

               
Cow position:
               
chr28:8044179-8043959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
35, 159
               

               
Conread position:
               
93-501
               

               
Cow position:
               
chr28:18089682-18089272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
7.00649e-45
               

               
Alignm gaps (pig, cow):
               
29, 110
               

               
Conread position:
               
100-502
               

               
Cow position:
               
chr28:34648277-34648668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 229
               

               
Conread position:
               
141-462
               

               
Cow position:
               
chr28:2591313-2591635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 199
               

               
Conread position:
               
147-502
               

               
Cow position:
               
chr28:34593220-34593576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
48, 132
               

               
Conread position:
               
154-502
               

               
Cow position:
               
chr28:24666991-24667347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
56, 145
               

               
Conread position:
               
156-488
               

               
Cow position:
               
chr28:8722079-8721724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
47, 270
               

               
Conread position:
               
156-502
               

               
Cow position:
               
chr28:10619722-10619363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
156-502
               

               
Cow position:
               
chr28:21358397-21358753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
11, 259
               

               
Conread position:
               
158-499
               

               
Cow position:
               
chr28:34324213-34324557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
158-501
               

               
Cow position:
               
chr28:18102502-18102173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
105, 49
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr28:21325170-21325522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
45, 301
               

               
Conread position:
               
160-375
               

               
Cow position:
               
chr28:15681302-15681523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
43, 175
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr28:32792973-32792646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
23, 66
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr28:17668110-17667793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
21, 131
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr28:10582579-10582252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
21, 167
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr29:130824-131030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
119, 63
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr29:6470698-6470990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 83
               

               
Conread position:
               
16-502
               

               
Cow position:
               
chr29:804104-803634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 72
               

               
Conread position:
               
20-451
               

               
Cow position:
               
chr29:32640030-32640430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 38
               

               
Conread position:
               
22-427
               

               
Cow position:
               
chr29:45464561-45464147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
101, 367
               

               
Conread position:
               
26-374
               

               
Cow position:
               
chr29:1714342-1714701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 26
               

               
Conread position:
               
33-502
               

               
Cow position:
               
chr29:30810787-30811250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 169
               

               
Conread position:
               
46-502
               

               
Cow position:
               
chr29:32890460-32890907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 14
               

               
Conread position:
               
82-492
               

               
Cow position:
               
chr29:4635661-4635272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
43, 68
               

               
Conread position:
               
98-502
               

               
Cow position:
               
chr29:103873-104285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 314
               

               
Conread position:
               
106-502
               

               
Cow position:
               
chr29:34752373-34751987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 122
               

               
Conread position:
               
115-501
               

               
Cow position:
               
chr29:14012799-14013170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
5, 69
               

               
Conread position:
               
115-501
               

               
Cow position:
               
chr29:14073614-14073241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
5, 69
               

               
Conread position:
               
138-502
               

               
Cow position:
               
chr29:49143-48777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
57, 26
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr29:45459068-45459418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 185
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr29:45587954-45587599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
154-488
               

               
Cow position:
               
chr29:42649708-42650048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
154-488
               

               
Cow position:
               
chr29:42801568-42801908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chr29:19623878-19623545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
23, 234
               

               
Conread position:
               
189-502
               

               
Cow position:
               
chr29:15950790-15950477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
14, 119
               

               
Conread position:
               
245-493
               

               
Cow position:
               
chr29:131038-131284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
18, 104
               

               
Conread position:
               
262-492
               

               
Cow position:
               
chr29:35262804-35263024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr3:14587446-14587768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
1-362
               

               
Cow position:
               
chr3:44257037-44256691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 157
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr3:14755383-14754873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 173
               

               
Conread position:
               
2-502
               

               
Cow position:
               
chr3:18357753-18357259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 39
               

               
Conread position:
               
10-310
               

               
Cow position:
               
chr3:60211011-60210710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 19
               

               
Conread position:
               
10-335
               

               
Cow position:
               
chr3:26948450-26948785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
10-374
               

               
Cow position:
               
chr3:56096720-56097073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
191, 104
               

               
Conread position:
               
12-256
               

               
Cow position:
               
chr3:17751374-17751606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
105, 159
               

               
Conread position:
               
12-398
               

               
Cow position:
               
chr3:54865586-54865190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 105
               

               
Conread position:
               
12-501
               

               
Cow position:
               
chr3:45775931-45775452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
501
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr3:15177445-15177942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
377
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 66
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr3:30928814-30929296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 169
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chr3:36099585-36099091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 16
               

               
Conread position:
               
13-502
               

               
Cow position:
               
chr3:83701003-83700521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
188, 116
               

               
Conread position:
               
16-485
               

               
Cow position:
               
chr3:32843298-32842825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 32
               

               
Conread position:
               
16-492
               

               
Cow position:
               
chr3:58208949-58208483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
483
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 68
               

               
Conread position:
               
17-502
               

               
Cow position:
               
chr3:52861006-52861489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 338
               

               
Conread position:
               
23-502
               

               
Cow position:
               
chr3:80870874-80871352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
359
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 273
               

               
Conread position:
               
45-374
               

               
Cow position:
               
chr3:65584436-65584103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
74, 111
               

               
Conread position:
               
52-498
               

               
Cow position:
               
chr3:34094229-34093777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
458
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 306
               

               
Conread position:
               
58-342
               

               
Cow position:
               
chr3:50011585-50011871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
62, 93
               

               
Conread position:
               
58-487
               

               
Cow position:
               
chr3:3979571-3979990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
38, 178
               

               
Conread position:
               
58-488
               

               
Cow position:
               
chr3:64359002-64358561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 359
               

               
Conread position:
               
60-397
               

               
Cow position:
               
chr3:27906098-27905755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
62, 84
               

               
Conread position:
               
74-278
               

               
Cow position:
               
chr3:54350706-54350499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
135, 116
               

               
Conread position:
               
81-499
               

               
Cow position:
               
chr3:19692891-19692464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 196
               

               
Conread position:
               
113-502
               

               
Cow position:
               
chr3:21946180-21945789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 235
               

               
Conread position:
               
136-473
               

               
Cow position:
               
chr3:54782810-54783154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
73, 44
               

               
Conread position:
               
138-501
               

               
Cow position:
               
chr3:49309408-49309058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
69, 107
               

               
Conread position:
               
140-502
               

               
Cow position:
               
chr3:24592357-24591993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
7, 171
               

               
Conread position:
               
141-501
               

               
Cow position:
               
chr3:13277989-13277623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
146-488
               

               
Cow position:
               
chr3:6684713-6685055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
8, 198
               

               
Conread position:
               
146-502
               

               
Cow position:
               
chr3:19801676-19802041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
151-502
               

               
Cow position:
               
chr3:5882804-5883157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
154-502
               

               
Cow position:
               
chr3:3053889-3054229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
49, 60
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr3:39325969-39326308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
45, 102
               

               
Conread position:
               
164-502
               

               
Cow position:
               
chr3:78028135-78027794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 180
               

               
Conread position:
               
266-502
               

               
Cow position:
               
chr3:30313944-30314177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
57, 72
               

               
Conread position:
               
1-163
               

               
Cow position:
               
chr4:51045184-51045021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
119, 89
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr4:11383198-11383467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
120, 27
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr4:21563883-21564261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 125
               

               
Conread position:
               
10-218
               

               
Cow position:
               
chr4:9484851-9484645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
115, 81
               

               
Conread position:
               
31-292
               

               
Cow position:
               
chr4:31678390-31678133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
185, 33
               

               
Conread position:
               
48-502
               

               
Cow position:
               
chr4:58883706-58883250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 56
               

               
Conread position:
               
58-282
               

               
Cow position:
               
chr4:54954930-54955155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
64, 173
               

               
Conread position:
               
92-488
               

               
Cow position:
               
chr4:22471239-22471617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
33, 56
               

               
Conread position:
               
96-502
               

               
Cow position:
               
chr4:21358679-21359084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 191
               

               
Conread position:
               
140-258
               

               
Cow position:
               
chr4:11394234-11394117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
120
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
61, 90
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr4:18515955-18516317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 201
               

               
Conread position:
               
152-501
               

               
Cow position:
               
chr4:30282764-30283115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 30
               

               
Conread position:
               
156-436
               

               
Cow position:
               
chr4:60672980-60673263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
45, 89
               

               
Conread position:
               
169-502
               

               
Cow position:
               
chr4:8599036-8598710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr4:43880201-43880517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
21, 170
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr4:57978513-57978824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
21, 151
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr4:25600510-25600179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
29, 170
               

               
Conread position:
               
312-493
               

               
Cow position:
               
chr4:11383669-11383842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr5:23227279-23227774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 101
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr5:34167089-34167591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 22
               

               
Conread position:
               
10-500
               

               
Cow position:
               
chr5:23756531-23756060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
349
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 30
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr5:27000215-27000717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 165
               

               
Conread position:
               
11-460
               

               
Cow position:
               
chr5:7503379-7502911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 263
               

               
Conread position:
               
12-397
               

               
Cow position:
               
chr5:26090825-26090438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
104, 70
               

               
Conread position:
               
12-452
               

               
Cow position:
               
chr5:52432861-52433308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
459
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 123
               

               
Conread position:
               
12-501
               

               
Cow position:
               
chr5:27683692-27683230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
108, 187
               

               
Conread position:
               
16-498
               

               
Cow position:
               
chr5:24151104-24151591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 13
               

               
Conread position:
               
16-498
               

               
Cow position:
               
chr5:25001860-25001405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 114
               

               
Conread position:
               
23-502
               

               
Cow position:
               
chr5:26070791-26070336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 59
               

               
Conread position:
               
32-502
               

               
Cow position:
               
chr5:58090752-58090310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
90, 33
               

               
Conread position:
               
44-500
               

               
Cow position:
               
chr5:27488091-27488545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
465
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
219, 83
               

               
Conread position:
               
45-483
               

               
Cow position:
               
chr5:51320197-51319777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 203
               

               
Conread position:
               
49-502
               

               
Cow position:
               
chr5:58746952-58747407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
58-229
               

               
Cow position:
               
chr5:6518926-6519097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
58-488
               

               
Cow position:
               
chr5:46631331-46630912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 146
               

               
Conread position:
               
58-502
               

               
Cow position:
               
chr5:23688411-23687955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 249
               

               
Conread position:
               
70-488
               

               
Cow position:
               
chr5:27060991-27060574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 134
               

               
Conread position:
               
88-316
               

               
Cow position:
               
chr5:47072917-47073150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
31, 21
               

               
Conread position:
               
88-487
               

               
Cow position:
               
chr5:14659997-14659588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
37, 67
               

               
Conread position:
               
88-492
               

               
Cow position:
               
chr5:60899816-60900215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
120-446
               

               
Cow position:
               
chr5:29123898-29123568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
139-501
               

               
Cow position:
               
chr5:4068146-4068505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
139-502
               

               
Cow position:
               
chr5:2430979-2430616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
140-489
               

               
Cow position:
               
chr5:7370107-7369761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
144-502
               

               
Cow position:
               
chr5:26768975-26769329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
15, 171
               

               
Conread position:
               
146-502
               

               
Cow position:
               
chr5:12682349-12681985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
9, 266
               

               
Conread position:
               
150-488
               

               
Cow position:
               
chr5:7273032-7273368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
151-488
               

               
Cow position:
               
chr5:41530413-41530068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
21, 156
               

               
Conread position:
               
152-488
               

               
Cow position:
               
chr5:61274006-61273659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
51, 242
               

               
Conread position:
               
158-380
               

               
Cow position:
               
chr5:55150100-55149876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
45, 100
               

               
Conread position:
               
158-488
               

               
Cow position:
               
chr5:41963761-41963430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
24, 30
               

               
Conread position:
               
162-498
               

               
Cow position:
               
chr5:56858529-56858190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
41, 154
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr5:10917989-10918313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 170
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr5:24097840-24098163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
21, 41
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr5:34695771-34696100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 170
               

               
Conread position:
               
175-485
               

               
Cow position:
               
chr5:49120091-49119779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 151
               

               
Conread position:
               
178-485
               

               
Cow position:
               
chr5:29456810-29457121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
5, 210
               

               
Conread position:
               
178-502
               

               
Cow position:
               
chr5:76124357-76124035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
23, 116
               

               
Conread position:
               
204-502
               

               
Cow position:
               
chr5:54619702-54619989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
23, 56
               

               
Conread position:
               
234-500
               

               
Cow position:
               
chr5:30088458-30088192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 169
               

               
Conread position:
               
280-502
               

               
Cow position:
               
chr5:26095042-26095259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr6:42360418-42360216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
200, 160
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr6:37477388-37477897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 163
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr6:52803597-52804081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 185
               

               
Conread position:
               
10-372
               

               
Cow position:
               
chr6:34202731-34203079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 20
               

               
Conread position:
               
12-319
               

               
Cow position:
               
chr6:59742048-59741756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 52
               

               
Conread position:
               
12-498
               

               
Cow position:
               
chr6:66194806-66194321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 80
               

               
Conread position:
               
13-157
               

               
Cow position:
               
chr6:10053777-10053925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
16-380
               

               
Cow position:
               
chr6:16622375-16622735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
105, 51
               

               
Conread position:
               
16-488
               

               
Cow position:
               
chr6:66538499-66538970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
332
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
43-474
               

               
Cow position:
               
chr6:51584804-51584367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 204
               

               
Conread position:
               
50-502
               

               
Cow position:
               
chr6:7180457-7180007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 313
               

               
Conread position:
               
88-289
               

               
Cow position:
               
chr6:49946831-49946621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 163
               

               
Conread position:
               
91-363
               

               
Cow position:
               
chr6:60511690-60511967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
32, 56
               

               
Conread position:
               
104-501
               

               
Cow position:
               
chr6:62489469-62489054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
24, 151
               

               
Conread position:
               
139-459
               

               
Cow position:
               
chr6:10053934-10054239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
68, 30
               

               
Conread position:
               
147-502
               

               
Cow position:
               
chr6:3890185-3889829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
56, 25
               

               
Conread position:
               
150-468
               

               
Cow position:
               
chr6:40555308-40554986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
25, 256
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr6:15281241-15280885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
25, 195
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr6:21970980-21971331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
45, 185
               

               
Conread position:
               
168-502
               

               
Cow position:
               
chr6:38231587-38231937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
35, 252
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr6:65840915-65841233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
21, 171
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr6:28274319-28274646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
21, 213
               

               
Conread position:
               
178-488
               

               
Cow position:
               
chr6:28508964-28509276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
238-485
               

               
Cow position:
               
chr6:52735790-52736045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 172
               

               
Conread position:
               
243-501
               

               
Cow position:
               
chr6:17100504-17100246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 84
               

               
Conread position:
               
262-467
               

               
Cow position:
               
chr6:48367856-48368052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
275-492
               

               
Cow position:
               
chr6:51189982-51190195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
83, 127
               

               
Conread position:
               
306-498
               

               
Cow position:
               
chr6:59741554-59741371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
307-500
               

               
Cow position:
               
chr6:42360196-42360013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
317-501
               

               
Cow position:
               
chr6:1384366-1384185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
143, 84
               

               
Conread position:
               
332-502
               

               
Cow position:
               
chr6:1101307-1101149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
335-488
               

               
Cow position:
               
chr6:2885740-2885889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr7:22680758-22680422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 15
               

               
Conread position:
               
1-501
               

               
Cow position:
               
chr7:53014758-53015242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
518
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 71
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chr7:47049677-47050171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
507
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 137
               

               
Conread position:
               
10-160
               

               
Cow position:
               
chr7:18936508-18936358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
111, 18
               

               
Conread position:
               
10-319
               

               
Cow position:
               
chr7:63961450-63961137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 164
               

               
Conread position:
               
10-500
               

               
Cow position:
               
chr7:49289836-49290341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 13
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chr7:20429748-20429254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 179
               

               
Conread position:
               
12-184
               

               
Cow position:
               
chr7:47113846-47113675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
108, 144
               

               
Conread position:
               
16-344
               

               
Cow position:
               
chr7:52805377-52805054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
102, 93
               

               
Conread position:
               
16-499
               

               
Cow position:
               
chr7:31864141-31864600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 80
               

               
Conread position:
               
16-502
               

               
Cow position:
               
chr7:68556186-68556661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 42
               

               
Conread position:
               
23-353
               

               
Cow position:
               
chr7:39556957-39556626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 158
               

               
Conread position:
               
24-240
               

               
Cow position:
               
chr7:1737289-1737064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
24-502
               

               
Cow position:
               
chr7:60858076-60857601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
25-248
               

               
Cow position:
               
chr7:25249841-25250069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
32-335
               

               
Cow position:
               
chr7:49445575-49445883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 149
               

               
Conread position:
               
33-382
               

               
Cow position:
               
chr7:23447837-23447500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 33
               

               
Conread position:
               
34-277
               

               
Cow position:
               
chr7:54868152-54867910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
99, 14
               

               
Conread position:
               
48-280
               

               
Cow position:
               
chr7:62680545-62680305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
65, 116
               

               
Conread position:
               
59-498
               

               
Cow position:
               
chr7:26883443-26883886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
450
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 185
               

               
Conread position:
               
66-247
               

               
Cow position:
               
chr7:54886824-54887008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
73-419
               

               
Cow position:
               
chr7:37020980-37021323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 68
               

               
Conread position:
               
88-358
               

               
Cow position:
               
chr7:26457797-26457520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
88-501
               

               
Cow position:
               
chr7:68327897-68328319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
35, 82
               

               
Conread position:
               
91-501
               

               
Cow position:
               
chr7:750270-750673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 122
               

               
Conread position:
               
126-502
               

               
Cow position:
               
chr7:55281422-55281042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 184
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chr7:39791116-39791484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
17, 48
               

               
Conread position:
               
139-502
               

               
Cow position:
               
chr7:20107158-20106796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
64, 139
               

               
Conread position:
               
146-502
               

               
Cow position:
               
chr7:54602238-54602597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
49, 198
               

               
Conread position:
               
148-315
               

               
Cow position:
               
chr7:35288232-35288061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
150-500
               

               
Cow position:
               
chr7:18936166-18935802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
17, 250
               

               
Conread position:
               
152-502
               

               
Cow position:
               
chr7:3154173-3154529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
69, 162
               

               
Conread position:
               
158-488
               

               
Cow position:
               
chr7:29371353-29371021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 77
               

               
Conread position:
               
165-452
               

               
Cow position:
               
chr7:3729477-3729764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
44, 82
               

               
Conread position:
               
171-485
               

               
Cow position:
               
chr7:68084239-68084553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
33, 119
               

               
Conread position:
               
172-474
               

               
Cow position:
               
chr7:1611988-1611683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
31, 169
               

               
Conread position:
               
172-488
               

               
Cow position:
               
chr7:27786048-27786365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
174-474
               

               
Cow position:
               
chr7:10431974-10431666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 164
               

               
Conread position:
               
261-502
               

               
Cow position:
               
chr7:1736666-1736431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
123, 74
               

               
Conread position:
               
10-315
               

               
Cow position:
               
chr8:45693944-45693633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 13
               

               
Conread position:
               
13-502
               

               
Cow position:
               
chr8:42466848-42467334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 136
               

               
Conread position:
               
18-489
               

               
Cow position:
               
chr8:12664578-12664098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 42
               

               
Conread position:
               
25-502
               

               
Cow position:
               
chr8:25542067-25542533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 62
               

               
Conread position:
               
30-502
               

               
Cow position:
               
chr8:13735111-13735588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 173
               

               
Conread position:
               
50-502
               

               
Cow position:
               
chr8:44692806-44693237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
455
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
72, 58
               

               
Conread position:
               
58-488
               

               
Cow position:
               
chr8:45161879-45161438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 311
               

               
Conread position:
               
61-488
               

               
Cow position:
               
chr8:53426820-53427254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 20
               

               
Conread position:
               
88-489
               

               
Cow position:
               
chr8:46633878-46633467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
121, 215
               

               
Conread position:
               
91-488
               

               
Cow position:
               
chr8:8904975-8904585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
112, 17
               

               
Conread position:
               
92-426
               

               
Cow position:
               
chr8:23766823-23766488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
95-501
               

               
Cow position:
               
chr8:42658928-42658526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 27
               

               
Conread position:
               
121-424
               

               
Cow position:
               
chr8:11590196-11590498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
82, 111
               

               
Conread position:
               
136-500
               

               
Cow position:
               
chr8:8534447-8534105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
73, 29
               

               
Conread position:
               
136-501
               

               
Cow position:
               
chr8:48783595-48783949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
28, 199
               

               
Conread position:
               
137-421
               

               
Cow position:
               
chr8:12715571-12715838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
122, 25
               

               
Conread position:
               
137-488
               

               
Cow position:
               
chr8:4685965-4686316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 34
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chr8:47662755-47662391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
38, 27
               

               
Conread position:
               
142-450
               

               
Cow position:
               
chr8:38607953-38607639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
8, 236
               

               
Conread position:
               
146-488
               

               
Cow position:
               
chr8:44077446-44077099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
8, 92
               

               
Conread position:
               
147-502
               

               
Cow position:
               
chr8:24916751-24916397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
48, 194
               

               
Conread position:
               
149-502
               

               
Cow position:
               
chr8:8909817-8910171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 23
               

               
Conread position:
               
150-502
               

               
Cow position:
               
chr8:45796163-45795808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
25, 195
               

               
Conread position:
               
154-488
               

               
Cow position:
               
chr8:33429509-33429837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
47, 190
               

               
Conread position:
               
154-502
               

               
Cow position:
               
chr8:11757292-11757657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 155
               

               
Conread position:
               
158-488
               

               
Cow position:
               
chr8:42162064-42161730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
45, 157
               

               
Conread position:
               
158-502
               

               
Cow position:
               
chr8:27984224-27983864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
45, 266
               

               
Conread position:
               
172-485
               

               
Cow position:
               
chr8:59263289-59262975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 8
               

               
Conread position:
               
174-502
               

               
Cow position:
               
chr8:29441220-29440892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
175-502
               

               
Cow position:
               
chr8:36638052-36637722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
20, 169
               

               
Conread position:
               
180-488
               

               
Cow position:
               
chr8:24421171-24420867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
27, 144
               

               
Conread position:
               
181-502
               

               
Cow position:
               
chr8:36636927-36636607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
81, 159
               

               
Conread position:
               
204-502
               

               
Cow position:
               
chr8:9264632-9264343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
27, 106
               

               
Conread position:
               
280-502
               

               
Cow position:
               
chr8:5873348-5873574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
48, 83
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr9:23400731-23401073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 27
               

               
Conread position:
               
1-487
               

               
Cow position:
               
chr9:20310623-20310143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
347
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 9
               

               
Conread position:
               
10-398
               

               
Cow position:
               
chr9:26103487-26103104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 24
               

               
Conread position:
               
10-487
               

               
Cow position:
               
chr9:2051576-2052032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 146
               

               
Conread position:
               
12-267
               

               
Cow position:
               
chr9:6973183-6973443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
12-353
               

               
Cow position:
               
chr9:52569533-52569877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
108, 16
               

               
Conread position:
               
12-354
               

               
Cow position:
               
chr9:2196084-2196419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
66, 37
               

               
Conread position:
               
12-364
               

               
Cow position:
               
chr9:18835824-18836177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 91
               

               
Conread position:
               
12-382
               

               
Cow position:
               
chr9:10318610-10318988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 140
               

               
Conread position:
               
13-322
               

               
Cow position:
               
chr9:8167122-8166802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 166
               

               
Conread position:
               
13-455
               

               
Cow position:
               
chr9:26237225-26237653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 79
               

               
Conread position:
               
15-419
               

               
Cow position:
               
chr9:34107758-34107348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 34
               

               
Conread position:
               
18-484
               

               
Cow position:
               
chr9:26713180-26712720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 60
               

               
Conread position:
               
19-284
               

               
Cow position:
               
chr9:3579983-3579714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 214
               

               
Conread position:
               
19-501
               

               
Cow position:
               
chr9:4027986-4027497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 24
               

               
Conread position:
               
27-502
               

               
Cow position:
               
chr9:6756678-6757157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 113
               

               
Conread position:
               
33-177
               

               
Cow position:
               
chr9:35885310-35885455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
33-451
               

               
Cow position:
               
chr9:6111805-6111402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 67
               

               
Conread position:
               
34-501
               

               
Cow position:
               
chr9:31776076-31776538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
333
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 119
               

               
Conread position:
               
35-502
               

               
Cow position:
               
chr9:64117988-64118431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 128
               

               
Conread position:
               
58-455
               

               
Cow position:
               
chr9:13219507-13219888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
64, 36
               

               
Conread position:
               
69-502
               

               
Cow position:
               
chr9:59424897-59425299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
134, 52
               

               
Conread position:
               
74-288
               

               
Cow position:
               
chr9:240919-240701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
48, 26
               

               
Conread position:
               
84-501
               

               
Cow position:
               
chr9:14962264-14961843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
41, 71
               

               
Conread position:
               
88-321
               

               
Cow position:
               
chr9:5425567-5425332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
37, 61
               

               
Conread position:
               
88-501
               

               
Cow position:
               
chr9:52289799-52290226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
37, 355
               

               
Conread position:
               
91-455
               

               
Cow position:
               
chr9:35657167-35657528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
34, 74
               

               
Conread position:
               
92-492
               

               
Cow position:
               
chr9:9563502-9563107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
33, 57
               

               
Conread position:
               
130-502
               

               
Cow position:
               
chr9:8969823-8969456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 184
               

               
Conread position:
               
136-289
               

               
Cow position:
               
chr9:28002389-28002549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
147-323
               

               
Cow position:
               
chr9:17527519-17527333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
158-315
               

               
Cow position:
               
chr9:3802756-3802914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
160-501
               

               
Cow position:
               
chr9:42904431-42904090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 18
               

               
Conread position:
               
172-421
               

               
Cow position:
               
chr9:22650178-22650430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 163
               

               
Conread position:
               
172-488
               

               
Cow position:
               
chr9:18510469-18510151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
23, 117
               

               
Conread position:
               
174-488
               

               
Cow position:
               
chr9:9012366-9012681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
29, 168
               

               
Conread position:
               
250-500
               

               
Cow position:
               
chr9:39992271-39992527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
11, 162
               

               
Conread position:
               
271-502
               

               
Cow position:
               
chr9:3579598-3579376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
174, 76
               

               
Conread position:
               
271-502
               

               
Cow position:
               
chr9:6973532-6973751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
224, 37
               

               
Conread position:
               
1-440
               

               
Cow position:
               
chrX:13051676-13052116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
452
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 160
               

               
Conread position:
               
1-502
               

               
Cow position:
               
chrX:21271180-21270673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 10
               

               
Conread position:
               
10-502
               

               
Cow position:
               
chrX:31079536-31080028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 208
               

               
Conread position:
               
11-500
               

               
Cow position:
               
chrX:34987663-34988136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 37
               

               
Conread position:
               
12-243
               

               
Cow position:
               
chrX:20699403-20699168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
50, 87
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chrX:2142317-2142806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 165
               

               
Conread position:
               
12-502
               

               
Cow position:
               
chrX:12998566-12998092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
498
               

               
Alignm identity:
               
348
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 38
               

               
Conread position:
               
13-502
               

               
Cow position:
               
chrX:19185938-19185451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
373
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 324
               

               
Conread position:
               
16-502
               

               
Cow position:
               
chrX:24376372-24376866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
502
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
104, 143
               

               
Conread position:
               
16-502
               

               
Cow position:
               
chrX:30369972-30369480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
351
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 147
               

               
Conread position:
               
28-502
               

               
Cow position:
               
chrX:22131684-22131194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 365
               

               
Conread position:
               
58-399
               

               
Cow position:
               
chrX:17669358-17669011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 257
               

               
Conread position:
               
81-501
               

               
Cow position:
               
chrX:24139905-24139486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
6, 16
               

               
Conread position:
               
85-501
               

               
Cow position:
               
chrX:6887256-6886862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
40, 7
               

               
Conread position:
               
88-501
               

               
Cow position:
               
chrX:22894295-22893869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 328
               

               
Conread position:
               
91-353
               

               
Cow position:
               
chrX:24175718-24175453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
34, 25
               

               
Conread position:
               
91-375
               

               
Cow position:
               
chrX:31885113-31884833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
118, 45
               

               
Conread position:
               
94-374
               

               
Cow position:
               
chrX:21316265-21316540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 61
               

               
Conread position:
               
137-502
               

               
Cow position:
               
chrX:23456437-23456078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 36
               

               
Conread position:
               
142-319
               

               
Cow position:
               
chrX:12974534-12974351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
142-502
               

               
Cow position:
               
chrX:28549029-28549396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
60, 267
               

               
Conread position:
               
149-374
               

               
Cow position:
               
chrX:17887732-17887958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-33
               

               
Alignm gaps (pig, cow):
               
60, 34
               

               
Conread position:
               
149-500
               

               
Cow position:
               
chrX:2788077-2787722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
54, 100
               

               
Conread position:
               
154-312
               

               
Cow position:
               
chrX:31034837-31035001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
156-319
               

               
Cow position:
               
chrX:31372099-31372268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
158-485
               

               
Cow position:
               
chrX:29283878-29284211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
45, 252
               

               
Conread position:
               
162-502
               

               
Cow position:
               
chrX:30710509-30710847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 9
               

               
Conread position:
               
164-501
               

               
Cow position:
               
chrX:19927464-19927805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
29, 242
               

               
Conread position:
               
171-500
               

               
Cow position:
               
chrX:31192601-31192269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
32, 37
               

               
Conread position:
               
172-502
               

               
Cow position:
               
chrX:15128080-15127750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
23, 58
               

               
Conread position:
               
238-501
               

               
Cow position:
               
chrX:20699036-20698771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
26, 168
               

               
Conread position:
               
262-500
               

               
Cow position:
               
chrX:37757055-37757280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
273-502
               

               
Cow position:
               
chrX:18532262-18532498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
276-502
               

               
Cow position:
               
chrX:18955245-18955022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
41, 62