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Cow genome map

           
Conread name:
           
rthg05_i6.y1
        

               
Conread position:
               
4-305
               

               
Cow position:
               
chr1:79286387-79286677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 31
               

               
Conread position:
               
9-382
               

               
Cow position:
               
chr1:60426800-60426435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
177, 43
               

               
Conread position:
               
12-258
               

               
Cow position:
               
chr1:26574981-26574746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
173, 52
               

               
Conread position:
               
12-280
               

               
Cow position:
               
chr1:26743523-26743266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
173, 37
               

               
Conread position:
               
13-316
               

               
Cow position:
               
chr1:85712892-85713185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
299, 42
               

               
Conread position:
               
55-384
               

               
Cow position:
               
chr1:93744858-93745181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
68, 49
               

               
Conread position:
               
57-343
               

               
Cow position:
               
chr1:28676761-28677040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
228, 11
               

               
Conread position:
               
66-489
               

               
Cow position:
               
chr1:73642694-73643109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 38
               

               
Conread position:
               
68-387
               

               
Cow position:
               
chr1:48695270-48694962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
117, 43
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr1:33364287-33363966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr1:92034783-92035101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-400
               

               
Cow position:
               
chr1:61343030-61342696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
85, 146
               

               
Conread position:
               
68-403
               

               
Cow position:
               
chr1:30649493-30649165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
117, 60
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr1:91901705-91902051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
68-444
               

               
Cow position:
               
chr1:49605755-49606128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
55, 51
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr1:53251218-53250803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
215, 93
               

               
Conread position:
               
75-351
               

               
Cow position:
               
chr1:83977255-83977523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
209, 26
               

               
Conread position:
               
75-485
               

               
Cow position:
               
chr1:61562726-61563141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
110, 138
               

               
Conread position:
               
78-419
               

               
Cow position:
               
chr1:56424603-56424944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
107, 136
               

               
Conread position:
               
85-453
               

               
Cow position:
               
chr1:73064635-73064266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-24
               

               
Alignm gaps (pig, cow):
               
100, 128
               

               
Conread position:
               
90-486
               

               
Cow position:
               
chr1:79987907-79988299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
105-359
               

               
Cow position:
               
chr1:94496536-94496275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
22, 28
               

               
Conread position:
               
107-418
               

               
Cow position:
               
chr1:78922289-78921981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 113
               

               
Conread position:
               
110-359
               

               
Cow position:
               
chr1:50421324-50421070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
170, 75
               

               
Conread position:
               
113-453
               

               
Cow position:
               
chr1:37677429-37677089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
68, 109
               

               
Conread position:
               
117-395
               

               
Cow position:
               
chr1:87738226-87738510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
57, 40
               

               
Conread position:
               
131-418
               

               
Cow position:
               
chr1:79553244-79553527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
184, 44
               

               
Conread position:
               
4-351
               

               
Cow position:
               
chr10:54892671-54892323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
157, 12
               

               
Conread position:
               
13-271
               

               
Cow position:
               
chr10:37520505-37520260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
172, 51
               

               
Conread position:
               
13-324
               

               
Cow position:
               
chr10:24100440-24100133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
173, 51
               

               
Conread position:
               
13-452
               

               
Cow position:
               
chr10:10685971-10686405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
19-396
               

               
Cow position:
               
chr10:922608-922251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
166, 45
               

               
Conread position:
               
64-453
               

               
Cow position:
               
chr10:20267762-20267376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
179, 151
               

               
Conread position:
               
68-417
               

               
Cow position:
               
chr10:52047094-52047433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 80
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr10:8292837-8293263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr10:14333134-14332707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
112, 145
               

               
Conread position:
               
75-418
               

               
Cow position:
               
chr10:19737826-19738158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
110, 31
               

               
Conread position:
               
75-451
               

               
Cow position:
               
chr10:7858609-7858240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 20
               

               
Conread position:
               
79-403
               

               
Cow position:
               
chr10:24737974-24737656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 39
               

               
Conread position:
               
90-490
               

               
Cow position:
               
chr10:39440899-39441304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
95, 123
               

               
Conread position:
               
101-382
               

               
Cow position:
               
chr10:8207297-8207022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
84, 97
               

               
Conread position:
               
105-306
               

               
Cow position:
               
chr10:12988571-12988370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
62, 80
               

               
Conread position:
               
107-451
               

               
Cow position:
               
chr10:10531967-10531623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
40, 111
               

               
Conread position:
               
128-490
               

               
Cow position:
               
chr10:37509236-37509601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
142-287
               

               
Cow position:
               
chr10:56449702-56449846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
159-388
               

               
Cow position:
               
chr10:8412817-8412588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
26, 39
               

               
Conread position:
               
227-486
               

               
Cow position:
               
chr10:23866951-23866690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
22, 8
               

               
Conread position:
               
7-490
               

               
Cow position:
               
chr11:20573924-20573460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
178, 65
               

               
Conread position:
               
13-368
               

               
Cow position:
               
chr11:76276966-76276615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
172, 68
               

               
Conread position:
               
63-451
               

               
Cow position:
               
chr11:66568395-66568780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
129, 22
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr11:72365533-72365854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-402
               

               
Cow position:
               
chr11:57625829-57625496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
68-450
               

               
Cow position:
               
chr11:25809398-25809016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
117, 166
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr11:35332472-35332088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
100, 53
               

               
Conread position:
               
73-277
               

               
Cow position:
               
chr11:35268720-35268917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
117, 28
               

               
Conread position:
               
75-311
               

               
Cow position:
               
chr11:72590301-72590532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
208, 82
               

               
Conread position:
               
75-453
               

               
Cow position:
               
chr11:16655723-16655352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
110, 38
               

               
Conread position:
               
78-489
               

               
Cow position:
               
chr11:50557475-50557073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
41, 6
               

               
Conread position:
               
102-400
               

               
Cow position:
               
chr11:63861257-63860957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
83, 134
               

               
Conread position:
               
104-418
               

               
Cow position:
               
chr11:35542687-35542373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
81, 116
               

               
Conread position:
               
130-366
               

               
Cow position:
               
chr11:43084006-43083774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
55, 19
               

               
Conread position:
               
190-480
               

               
Cow position:
               
chr11:4884246-4883955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
203-489
               

               
Cow position:
               
chr11:23884544-23884828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
227-418
               

               
Cow position:
               
chr11:42556023-42556214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
70, 107
               

               
Conread position:
               
13-230
               

               
Cow position:
               
chr12:23026315-23026526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
167, 56
               

               
Conread position:
               
13-490
               

               
Cow position:
               
chr12:34175936-34176420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
65, 49
               

               
Conread position:
               
26-490
               

               
Cow position:
               
chr12:806410-805956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
475
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
145, 29
               

               
Conread position:
               
57-402
               

               
Cow position:
               
chr12:41464170-41463826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
109, 7
               

               
Conread position:
               
57-490
               

               
Cow position:
               
chr12:10542422-10541989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
128, 7
               

               
Conread position:
               
62-418
               

               
Cow position:
               
chr12:37561628-37561988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
14, 174
               

               
Conread position:
               
68-268
               

               
Cow position:
               
chr12:12241699-12241897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
117, 36
               

               
Conread position:
               
68-417
               

               
Cow position:
               
chr12:25097635-25097286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
112, 145
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr12:35548497-35548148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
117, 152
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr12:62579-62192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr12:36406039-36405652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 166
               

               
Conread position:
               
68-464
               

               
Cow position:
               
chr12:24980350-24980748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
108, 98
               

               
Conread position:
               
75-400
               

               
Cow position:
               
chr12:3717634-3717312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
110, 100
               

               
Conread position:
               
75-454
               

               
Cow position:
               
chr12:7862194-7861827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
117-490
               

               
Cow position:
               
chr12:27958848-27958470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
68, 119
               

               
Conread position:
               
190-491
               

               
Cow position:
               
chr12:18156783-18157086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
93, 22
               

               
Conread position:
               
6-378
               

               
Cow position:
               
chr13:3183149-3183513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
180, 18
               

               
Conread position:
               
12-286
               

               
Cow position:
               
chr13:44149725-44149986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
173, 48
               

               
Conread position:
               
13-453
               

               
Cow position:
               
chr13:18122500-18122063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
13-489
               

               
Cow position:
               
chr13:15883471-15883001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
172, 51
               

               
Conread position:
               
15-484
               

               
Cow position:
               
chr13:393755-393298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
474
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
171, 43
               

               
Conread position:
               
57-485
               

               
Cow position:
               
chr13:46462071-46462491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
126, 7
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr13:21586967-21587345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
117, 149
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr13:49976089-49976477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
68-471
               

               
Cow position:
               
chr13:34039920-34039513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
117, 107
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr13:19637566-19638000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 48
               

               
Conread position:
               
75-402
               

               
Cow position:
               
chr13:34095486-34095161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
186, 110
               

               
Conread position:
               
75-451
               

               
Cow position:
               
chr13:60443090-60443453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
205, 32
               

               
Conread position:
               
75-471
               

               
Cow position:
               
chr13:32549187-32549588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
110, 138
               

               
Conread position:
               
106-452
               

               
Cow position:
               
chr13:38624695-38625024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
79, 18
               

               
Conread position:
               
111-444
               

               
Cow position:
               
chr13:34088789-34089121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
75, 39
               

               
Conread position:
               
134-316
               

               
Cow position:
               
chr13:569806-569986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
51, 81
               

               
Conread position:
               
143-382
               

               
Cow position:
               
chr13:30148806-30149046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
136, 147
               

               
Conread position:
               
235-486
               

               
Cow position:
               
chr13:58843299-58843557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
45, 172
               

               
Conread position:
               
4-490
               

               
Cow position:
               
chr14:12802368-12801888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 47
               

               
Conread position:
               
13-451
               

               
Cow position:
               
chr14:2288501-2288926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
128, 32
               

               
Conread position:
               
57-482
               

               
Cow position:
               
chr14:21047388-21046958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
15, 43
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr14:18977143-18977467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
117, 153
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr14:47578908-47579229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-452
               

               
Cow position:
               
chr14:41766367-41766748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 154
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr14:7226698-7227085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-457
               

               
Cow position:
               
chr14:9047128-9047519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
117, 165
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr14:27041093-27040666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
117, 96
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr14:28210208-28210633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
112, 19
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr14:31709150-31709575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 157
               

               
Conread position:
               
82-485
               

               
Cow position:
               
chr14:22027469-22027060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
103, 93
               

               
Conread position:
               
189-444
               

               
Cow position:
               
chr14:36173396-36173643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
97, 34
               

               
Conread position:
               
4-481
               

               
Cow position:
               
chr15:12269769-12270235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 63
               

               
Conread position:
               
4-539
               

               
Cow position:
               
chr15:34920417-34919906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
426
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
276, 91
               

               
Conread position:
               
7-442
               

               
Cow position:
               
chr15:16343585-16343157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
178, 6
               

               
Conread position:
               
12-452
               

               
Cow position:
               
chr15:46551844-46551419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
92, 52
               

               
Conread position:
               
13-326
               

               
Cow position:
               
chr15:22455762-22455463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
172, 39
               

               
Conread position:
               
13-396
               

               
Cow position:
               
chr15:42634907-42634545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
271, 36
               

               
Conread position:
               
13-402
               

               
Cow position:
               
chr15:6933080-6932716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
172, 40
               

               
Conread position:
               
13-418
               

               
Cow position:
               
chr15:42944363-42943962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr15:13389125-13388696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
161, 51
               

               
Conread position:
               
13-490
               

               
Cow position:
               
chr15:22540574-22540096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
17-453
               

               
Cow position:
               
chr15:40057873-40057446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
175, 35
               

               
Conread position:
               
55-418
               

               
Cow position:
               
chr15:7587501-7587137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
59, 169
               

               
Conread position:
               
68-324
               

               
Cow position:
               
chr15:13612401-13612153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
92, 55
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr15:480878-481199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
117, 147
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr15:7270635-7270953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr15:16800568-16800889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-407
               

               
Cow position:
               
chr15:7577434-7577777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-481
               

               
Cow position:
               
chr15:15787179-15787583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
105, 31
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr15:35751001-35750574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 166
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr15:52977251-52977678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
70-452
               

               
Cow position:
               
chr15:42729227-42729585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
9, 33
               

               
Conread position:
               
74-377
               

               
Cow position:
               
chr15:28784350-28784052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
99, 29
               

               
Conread position:
               
75-453
               

               
Cow position:
               
chr15:8628613-8628989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
112, 133
               

               
Conread position:
               
78-400
               

               
Cow position:
               
chr15:34517442-34517766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
45, 38
               

               
Conread position:
               
79-490
               

               
Cow position:
               
chr15:18660622-18661038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
105, 87
               

               
Conread position:
               
82-388
               

               
Cow position:
               
chr15:24090136-24090443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
92, 142
               

               
Conread position:
               
110-506
               

               
Cow position:
               
chr15:24287166-24286770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
75, 109
               

               
Conread position:
               
152-384
               

               
Cow position:
               
chr15:38678434-38678665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
167-378
               

               
Cow position:
               
chr15:21805638-21805848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 8
               

               
Conread position:
               
9-376
               

               
Cow position:
               
chr16:25886156-25886512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
189, 43
               

               
Conread position:
               
12-310
               

               
Cow position:
               
chr16:13378152-13378441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
127, 10
               

               
Conread position:
               
12-324
               

               
Cow position:
               
chr16:46529736-46529408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
20, 237
               

               
Conread position:
               
13-401
               

               
Cow position:
               
chr16:22852899-22853270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
172, 51
               

               
Conread position:
               
13-453
               

               
Cow position:
               
chr16:23719500-23719071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
271, 20
               

               
Conread position:
               
16-388
               

               
Cow position:
               
chr16:25180528-25180880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
169, 9
               

               
Conread position:
               
23-379
               

               
Cow position:
               
chr16:49766967-49767309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 24
               

               
Conread position:
               
68-400
               

               
Cow position:
               
chr16:12535990-12535659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
68-402
               

               
Cow position:
               
chr16:5663741-5664072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr16:5526159-5525808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
108, 94
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr16:24406862-24407206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
113, 31
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr16:56861256-56861606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-444
               

               
Cow position:
               
chr16:1565730-1565354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr16:13539478-13539091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr16:17111198-17111585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
119, 151
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr16:24621751-24621364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
117, 166
               

               
Conread position:
               
68-485
               

               
Cow position:
               
chr16:15980439-15980010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
117, 343
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr16:416842-417268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
117, 82
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr16:3770064-3769637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
119, 145
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr16:8814154-8813729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
113, 166
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr16:37478914-37478487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
117, 144
               

               
Conread position:
               
69-486
               

               
Cow position:
               
chr16:54698777-54699183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 54
               

               
Conread position:
               
74-313
               

               
Cow position:
               
chr16:32741330-32741567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
116, 158
               

               
Conread position:
               
75-444
               

               
Cow position:
               
chr16:14352727-14352359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
110, 138
               

               
Conread position:
               
75-454
               

               
Cow position:
               
chr16:52627325-52627685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
75-490
               

               
Cow position:
               
chr16:25343929-25344351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
109, 140
               

               
Conread position:
               
82-479
               

               
Cow position:
               
chr16:3346198-3345808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
22, 34
               

               
Conread position:
               
105-480
               

               
Cow position:
               
chr16:15538427-15538805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
80, 112
               

               
Conread position:
               
141-381
               

               
Cow position:
               
chr16:3593845-3593604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 83
               

               
Conread position:
               
13-380
               

               
Cow position:
               
chr17:20414094-20413737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
172, 33
               

               
Conread position:
               
13-418
               

               
Cow position:
               
chr17:27792318-27791917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
35-485
               

               
Cow position:
               
chr17:18849973-18850418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
8.00141e-43
               

               
Alignm gaps (pig, cow):
               
62, 29
               

               
Conread position:
               
57-316
               

               
Cow position:
               
chr17:12130455-12130711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
128, 7
               

               
Conread position:
               
66-453
               

               
Cow position:
               
chr17:15709489-15709102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
121, 170
               

               
Conread position:
               
67-451
               

               
Cow position:
               
chr17:15373917-15374301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
114, 146
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr17:15438311-15438631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-403
               

               
Cow position:
               
chr17:19789741-19790075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
112, 96
               

               
Conread position:
               
68-447
               

               
Cow position:
               
chr17:253334-253712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
114, 98
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr17:25738811-25739237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
117, 26
               

               
Conread position:
               
74-320
               

               
Cow position:
               
chr17:40302899-40303138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
111, 42
               

               
Conread position:
               
75-400
               

               
Cow position:
               
chr17:37459900-37460220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
75-453
               

               
Cow position:
               
chr17:15718856-15719234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
112, 161
               

               
Conread position:
               
95-418
               

               
Cow position:
               
chr17:5546850-5546523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
19, 130
               

               
Conread position:
               
107-481
               

               
Cow position:
               
chr17:20694746-20695124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 113
               

               
Conread position:
               
109-452
               

               
Cow position:
               
chr17:4569799-4570138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
71, 127
               

               
Conread position:
               
129-486
               

               
Cow position:
               
chr17:3606164-3605810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
56, 71
               

               
Conread position:
               
295-490
               

               
Cow position:
               
chr17:29820871-29821068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
159, 16
               

               
Conread position:
               
5-453
               

               
Cow position:
               
chr18:14422946-14423380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
185, 8
               

               
Conread position:
               
6-403
               

               
Cow position:
               
chr18:35442142-35442528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
93, 39
               

               
Conread position:
               
6-418
               

               
Cow position:
               
chr18:20691519-20691133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
180, 46
               

               
Conread position:
               
13-394
               

               
Cow position:
               
chr18:26740304-26739945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
172, 47
               

               
Conread position:
               
13-417
               

               
Cow position:
               
chr18:26649485-26649870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
172, 42
               

               
Conread position:
               
14-372
               

               
Cow position:
               
chr18:31381741-31382098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
112, 31
               

               
Conread position:
               
14-396
               

               
Cow position:
               
chr18:5994200-5994568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
51, 30
               

               
Conread position:
               
24-379
               

               
Cow position:
               
chr18:17960289-17959937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
68-276
               

               
Cow position:
               
chr18:6459601-6459798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
118, 33
               

               
Conread position:
               
68-382
               

               
Cow position:
               
chr18:37354819-37355134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
117, 16
               

               
Conread position:
               
68-452
               

               
Cow position:
               
chr18:52630528-52630146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr18:9981349-9981736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr18:37583729-37583342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-480
               

               
Cow position:
               
chr18:27989486-27989903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-485
               

               
Cow position:
               
chr18:54032441-54032869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
97, 153
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr18:16092549-16092976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
112, 171
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr18:23072338-23071928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
117, 33
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr18:25923123-25923542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
117, 48
               

               
Conread position:
               
71-400
               

               
Cow position:
               
chr18:38158808-38158479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
29, 10
               

               
Conread position:
               
72-374
               

               
Cow position:
               
chr18:26748210-26748503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
101, 135
               

               
Conread position:
               
74-316
               

               
Cow position:
               
chr18:13052035-13052276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
97, 152
               

               
Conread position:
               
12-316
               

               
Cow position:
               
chr19:55672066-55672367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
21, 52
               

               
Conread position:
               
12-407
               

               
Cow position:
               
chr19:4303242-4303633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
64-403
               

               
Cow position:
               
chr19:47189721-47189380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
19, 151
               

               
Conread position:
               
68-302
               

               
Cow position:
               
chr19:18359565-18359330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 166
               

               
Conread position:
               
68-312
               

               
Cow position:
               
chr19:47094958-47095201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 85
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr19:474761-474374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr19:436601-436175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
112, 174
               

               
Conread position:
               
73-403
               

               
Cow position:
               
chr19:39885472-39885144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
101, 43
               

               
Conread position:
               
75-377
               

               
Cow position:
               
chr19:12701544-12701841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
86, 71
               

               
Conread position:
               
77-306
               

               
Cow position:
               
chr19:13095799-13095572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
138, 13
               

               
Conread position:
               
78-443
               

               
Cow position:
               
chr19:30474401-30474038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
108, 135
               

               
Conread position:
               
78-490
               

               
Cow position:
               
chr19:207248-207662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
107, 57
               

               
Conread position:
               
108-451
               

               
Cow position:
               
chr19:42256668-42256318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
71, 61
               

               
Conread position:
               
5-419
               

               
Cow position:
               
chr2:10880217-10880612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
180, 8
               

               
Conread position:
               
11-480
               

               
Cow position:
               
chr2:25717453-25717899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
273, 54
               

               
Conread position:
               
12-402
               

               
Cow position:
               
chr2:14091809-14092192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
12-450
               

               
Cow position:
               
chr2:1660587-1661002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
171, 39
               

               
Conread position:
               
12-489
               

               
Cow position:
               
chr2:5991006-5991473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
172, 55
               

               
Conread position:
               
13-388
               

               
Cow position:
               
chr2:1735870-1735511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
13-490
               

               
Cow position:
               
chr2:44093496-44093973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
489
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
174, 32
               

               
Conread position:
               
41-490
               

               
Cow position:
               
chr2:11162964-11162516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
55-320
               

               
Cow position:
               
chr2:15499640-15499380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
62-381
               

               
Cow position:
               
chr2:26068854-26068538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 43
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr2:2456319-2455998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-400
               

               
Cow position:
               
chr2:4805555-4805222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 147
               

               
Conread position:
               
68-403
               

               
Cow position:
               
chr2:2182089-2181753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
117, 48
               

               
Conread position:
               
68-403
               

               
Cow position:
               
chr2:45918585-45918254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 38
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr2:50079742-50080130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-457
               

               
Cow position:
               
chr2:10609601-10609218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 145
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr2:13067824-13067399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
108, 96
               

               
Conread position:
               
69-450
               

               
Cow position:
               
chr2:62051758-62051375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
116, 144
               

               
Conread position:
               
74-320
               

               
Cow position:
               
chr2:4034360-4034114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
111, 27
               

               
Conread position:
               
75-418
               

               
Cow position:
               
chr2:10739656-10739316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 26
               

               
Conread position:
               
75-443
               

               
Cow position:
               
chr2:43876914-43877277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 100
               

               
Conread position:
               
75-471
               

               
Cow position:
               
chr2:32862437-32862035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 138
               

               
Conread position:
               
131-456
               

               
Cow position:
               
chr2:74172306-74172638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 236
               

               
Conread position:
               
150-453
               

               
Cow position:
               
chr2:69141391-69141698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
36, 257
               

               
Conread position:
               
226-480
               

               
Cow position:
               
chr2:62436195-62435937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 38
               

               
Conread position:
               
6-303
               

               
Cow position:
               
chr20:37927261-37926977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
179, 7
               

               
Conread position:
               
6-400
               

               
Cow position:
               
chr20:5936361-5935976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
16, 7
               

               
Conread position:
               
12-313
               

               
Cow position:
               
chr20:36704042-36704328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
171, 52
               

               
Conread position:
               
36-377
               

               
Cow position:
               
chr20:6020467-6020792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
150, 24
               

               
Conread position:
               
68-272
               

               
Cow position:
               
chr20:42872466-42872658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
68-328
               

               
Cow position:
               
chr20:15970100-15970351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
118, 53
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr20:16559843-16559522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-417
               

               
Cow position:
               
chr20:39233930-39234278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
119, 84
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr20:18355929-18356279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-452
               

               
Cow position:
               
chr20:7598159-7597773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 99
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr20:38956836-38957223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-471
               

               
Cow position:
               
chr20:25845922-25845517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
117, 35
               

               
Conread position:
               
71-418
               

               
Cow position:
               
chr20:9587467-9587814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
118, 112
               

               
Conread position:
               
75-418
               

               
Cow position:
               
chr20:13506853-13506510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
106, 140
               

               
Conread position:
               
75-490
               

               
Cow position:
               
chr20:23805172-23804755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
115, 100
               

               
Conread position:
               
91-507
               

               
Cow position:
               
chr20:30187563-30187973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
92, 50
               

               
Conread position:
               
113-453
               

               
Cow position:
               
chr20:33598221-33597879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
74, 123
               

               
Conread position:
               
189-388
               

               
Cow position:
               
chr20:3134520-3134719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
91, 179
               

               
Conread position:
               
4-400
               

               
Cow position:
               
chr21:47972391-47971996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
6-486
               

               
Cow position:
               
chr21:12910887-12911370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
495
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
7, 44
               

               
Conread position:
               
6-506
               

               
Cow position:
               
chr21:37085896-37086391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
176, 54
               

               
Conread position:
               
12-382
               

               
Cow position:
               
chr21:42453682-42454044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
174, 40
               

               
Conread position:
               
12-490
               

               
Cow position:
               
chr21:30872517-30872979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
488
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
171, 40
               

               
Conread position:
               
15-285
               

               
Cow position:
               
chr21:45455944-45456205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
170, 27
               

               
Conread position:
               
59-384
               

               
Cow position:
               
chr21:21173748-21174065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
126, 32
               

               
Conread position:
               
68-282
               

               
Cow position:
               
chr21:36651593-36651801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
117, 48
               

               
Conread position:
               
68-306
               

               
Cow position:
               
chr21:34551070-34550835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
61, 18
               

               
Conread position:
               
68-316
               

               
Cow position:
               
chr21:44874590-44874350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
216, 36
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr21:39428211-39428560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
106, 133
               

               
Conread position:
               
68-419
               

               
Cow position:
               
chr21:23340869-23340518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr21:30056896-30056509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
73-396
               

               
Cow position:
               
chr21:45640484-45640173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
112, 25
               

               
Conread position:
               
78-402
               

               
Cow position:
               
chr21:31506604-31506278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
82, 20
               

               
Conread position:
               
78-407
               

               
Cow position:
               
chr21:3781595-3781925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
88, 161
               

               
Conread position:
               
78-490
               

               
Cow position:
               
chr21:5019964-5020381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
103, 135
               

               
Conread position:
               
100-326
               

               
Cow position:
               
chr21:46391864-46391643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
18, 87
               

               
Conread position:
               
12-482
               

               
Cow position:
               
chr22:43877720-43878174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
91, 29
               

               
Conread position:
               
13-381
               

               
Cow position:
               
chr22:41158326-41157967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
172, 39
               

               
Conread position:
               
17-402
               

               
Cow position:
               
chr22:13866157-13865777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
105, 19
               

               
Conread position:
               
66-490
               

               
Cow position:
               
chr22:9461668-9462093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
17, 152
               

               
Conread position:
               
68-271
               

               
Cow position:
               
chr22:37997619-37997418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 149
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr22:32337958-32338279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-402
               

               
Cow position:
               
chr22:14337783-14337459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
57, 33
               

               
Conread position:
               
68-403
               

               
Cow position:
               
chr22:18196913-18197251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr22:8487238-8486853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr22:14629748-14629361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-478
               

               
Cow position:
               
chr22:15309328-15308912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr22:31110067-31110479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
124, 54
               

               
Conread position:
               
69-324
               

               
Cow position:
               
chr22:10626091-10625843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
210, 53
               

               
Conread position:
               
73-343
               

               
Cow position:
               
chr22:39453228-39453501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
73-402
               

               
Cow position:
               
chr22:3271466-3271139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 140
               

               
Conread position:
               
75-450
               

               
Cow position:
               
chr22:539777-540152 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
110, 161
               

               
Conread position:
               
76-417
               

               
Cow position:
               
chr22:30676085-30675743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
85-402
               

               
Cow position:
               
chr22:30754901-30755216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
100, 36
               

               
Conread position:
               
86-486
               

               
Cow position:
               
chr22:42069447-42069056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
100, 26
               

               
Conread position:
               
90-450
               

               
Cow position:
               
chr22:40364202-40363850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
18, 40
               

               
Conread position:
               
108-419
               

               
Cow position:
               
chr22:3714828-3714517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
79, 114
               

               
Conread position:
               
112-439
               

               
Cow position:
               
chr22:13827102-13826781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
108, 73
               

               
Conread position:
               
128-490
               

               
Cow position:
               
chr22:13653247-13653600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
57, 108
               

               
Conread position:
               
12-374
               

               
Cow position:
               
chr23:16702323-16702684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
148, 60
               

               
Conread position:
               
13-490
               

               
Cow position:
               
chr23:2792183-2791710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
171, 28
               

               
Conread position:
               
68-387
               

               
Cow position:
               
chr23:36720931-36720611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
118, 36
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr23:5396952-5396631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
68-394
               

               
Cow position:
               
chr23:22989248-22988922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
38, 44
               

               
Conread position:
               
68-400
               

               
Cow position:
               
chr23:5624947-5624611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 281
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr23:1248899-1248512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr23:4080773-4081160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
108, 97
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr23:19317116-19317503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
119, 166
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr23:21008976-21008591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
74-310
               

               
Cow position:
               
chr23:34889411-34889170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
43, 165
               

               
Conread position:
               
91-359
               

               
Cow position:
               
chr23:12829972-12829696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
99, 82
               

               
Conread position:
               
108-452
               

               
Cow position:
               
chr23:3844369-3844023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
79, 128
               

               
Conread position:
               
118-402
               

               
Cow position:
               
chr23:3146612-3146893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
67, 98
               

               
Conread position:
               
129-315
               

               
Cow position:
               
chr23:14117210-14117021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
5-235
               

               
Cow position:
               
chr24:6190823-6190596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
180, 49
               

               
Conread position:
               
7-287
               

               
Cow position:
               
chr24:14963309-14963577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
179, 46
               

               
Conread position:
               
13-400
               

               
Cow position:
               
chr24:22322736-22323117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
269, 51
               

               
Conread position:
               
13-453
               

               
Cow position:
               
chr24:6021408-6020970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
13-489
               

               
Cow position:
               
chr24:6503576-6503116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
5, 43
               

               
Conread position:
               
23-450
               

               
Cow position:
               
chr24:18867269-18866849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
163, 30
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr24:34373313-34373634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr24:29084944-29084594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
68-430
               

               
Cow position:
               
chr24:37232707-37232353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr24:20367084-20367475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr24:31842257-31842648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
24, 71
               

               
Conread position:
               
68-464
               

               
Cow position:
               
chr24:16857618-16858011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
118, 31
               

               
Conread position:
               
68-479
               

               
Cow position:
               
chr24:3850316-3850733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
7.9874e-44
               

               
Alignm gaps (pig, cow):
               
97, 102
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr24:9548988-9549413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
72-485
               

               
Cow position:
               
chr24:12578246-12578664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
114, 142
               

               
Conread position:
               
94-482
               

               
Cow position:
               
chr24:36735411-36735031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-24
               

               
Alignm gaps (pig, cow):
               
91, 137
               

               
Conread position:
               
97-490
               

               
Cow position:
               
chr24:9545922-9546320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
90, 139
               

               
Conread position:
               
200-400
               

               
Cow position:
               
chr24:27320679-27320878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
206-486
               

               
Cow position:
               
chr24:42584440-42584723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
74, 29
               

               
Conread position:
               
4-407
               

               
Cow position:
               
chr25:21276533-21276931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
145, 9
               

               
Conread position:
               
12-364
               

               
Cow position:
               
chr25:27850614-27850945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
173, 48
               

               
Conread position:
               
13-395
               

               
Cow position:
               
chr25:19337952-19337574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9e-35
               

               
Alignm gaps (pig, cow):
               
174, 59
               

               
Conread position:
               
14-324
               

               
Cow position:
               
chr25:27813859-27814164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
171, 29
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr25:24007326-24007713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-455
               

               
Cow position:
               
chr25:19016977-19016599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
103, 80
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr25:35755823-35755398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
71-490
               

               
Cow position:
               
chr25:20633189-20633612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
85-475
               

               
Cow position:
               
chr25:21542760-21543150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
28-389
               

               
Cow position:
               
chr26:9166744-9166386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
12, 150
               

               
Conread position:
               
68-400
               

               
Cow position:
               
chr26:28275036-28274704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 39
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr26:367307-367693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 48
               

               
Conread position:
               
68-471
               

               
Cow position:
               
chr26:19348820-19348417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
117, 185
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr26:4122342-4122769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr26:9114711-9115138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
117, 152
               

               
Conread position:
               
78-315
               

               
Cow position:
               
chr26:19564771-19564539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
107, 97
               

               
Conread position:
               
148-402
               

               
Cow position:
               
chr26:15912396-15912647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
4-443
               

               
Cow position:
               
chr27:23905380-23905808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
113, 9
               

               
Conread position:
               
12-395
               

               
Cow position:
               
chr27:2623439-2623813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
90, 52
               

               
Conread position:
               
19-485
               

               
Cow position:
               
chr27:6380648-6380182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 63
               

               
Conread position:
               
63-490
               

               
Cow position:
               
chr27:26621624-26621194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
66, 58
               

               
Conread position:
               
68-400
               

               
Cow position:
               
chr27:19524083-19523746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-403
               

               
Cow position:
               
chr27:1535814-1536146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 34
               

               
Conread position:
               
69-453
               

               
Cow position:
               
chr27:12555875-12555503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
116, 105
               

               
Conread position:
               
73-395
               

               
Cow position:
               
chr27:21291247-21290919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
100, 22
               

               
Conread position:
               
92-453
               

               
Cow position:
               
chr27:773428-773791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
95, 129
               

               
Conread position:
               
19-392
               

               
Cow position:
               
chr28:3563399-3563019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 15
               

               
Conread position:
               
37-490
               

               
Cow position:
               
chr28:7215253-7214818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
462
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
120, 12
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr28:14110746-14111067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-450
               

               
Cow position:
               
chr28:5749031-5748649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
113, 144
               

               
Conread position:
               
68-478
               

               
Cow position:
               
chr28:30534386-30533969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
117, 166
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr28:12407538-12407112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr28:32786747-32786324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 108
               

               
Conread position:
               
73-402
               

               
Cow position:
               
chr28:18178495-18178169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
71, 37
               

               
Conread position:
               
75-400
               

               
Cow position:
               
chr28:33255004-33255329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
99, 138
               

               
Conread position:
               
75-490
               

               
Cow position:
               
chr28:1812277-1811862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
109, 93
               

               
Conread position:
               
75-490
               

               
Cow position:
               
chr28:30097560-30097980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
105, 138
               

               
Conread position:
               
82-490
               

               
Cow position:
               
chr28:20935724-20935310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
103, 131
               

               
Conread position:
               
105-313
               

               
Cow position:
               
chr28:27240928-27240725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-26
               

               
Alignm gaps (pig, cow):
               
72, 128
               

               
Conread position:
               
128-402
               

               
Cow position:
               
chr28:12176641-12176914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
55, 43
               

               
Conread position:
               
4-402
               

               
Cow position:
               
chr29:5398883-5399270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
179, 9
               

               
Conread position:
               
12-418
               

               
Cow position:
               
chr29:22990872-22990475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
173, 48
               

               
Conread position:
               
17-287
               

               
Cow position:
               
chr29:321826-321558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
170, 74
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chr29:40293978-40294299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-32
               

               
Alignm gaps (pig, cow):
               
106, 154
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr29:45814-45428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
112, 145
               

               
Conread position:
               
76-277
               

               
Cow position:
               
chr29:30463103-30463302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
107, 52
               

               
Conread position:
               
76-418
               

               
Cow position:
               
chr29:44404370-44404699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 8
               

               
Conread position:
               
76-490
               

               
Cow position:
               
chr29:28710818-28710406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
96, 40
               

               
Conread position:
               
78-480
               

               
Cow position:
               
chr29:23979367-23979774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
107, 135
               

               
Conread position:
               
92-453
               

               
Cow position:
               
chr29:22745571-22745933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
93, 51
               

               
Conread position:
               
93-487
               

               
Cow position:
               
chr29:2417581-2417191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
92, 140
               

               
Conread position:
               
141-439
               

               
Cow position:
               
chr29:43303325-43303626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-23
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
4-490
               

               
Cow position:
               
chr3:33759910-33759445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
493
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
100, 9
               

               
Conread position:
               
5-438
               

               
Cow position:
               
chr3:33707121-33707540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
279, 8
               

               
Conread position:
               
12-396
               

               
Cow position:
               
chr3:58103099-58103473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
173, 52
               

               
Conread position:
               
12-402
               

               
Cow position:
               
chr3:43482292-43482674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
121, 34
               

               
Conread position:
               
13-281
               

               
Cow position:
               
chr3:65920353-65920608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
158, 39
               

               
Conread position:
               
13-387
               

               
Cow position:
               
chr3:69434509-69434138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
110, 52
               

               
Conread position:
               
13-403
               

               
Cow position:
               
chr3:25998623-25998235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
172, 51
               

               
Conread position:
               
20-394
               

               
Cow position:
               
chr3:66411717-66411355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
165, 41
               

               
Conread position:
               
57-316
               

               
Cow position:
               
chr3:78905956-78905699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 7
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr3:43190710-43190323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr3:53880707-53880280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
117, 152
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr3:56645771-56645344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
112, 166
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr3:59864115-59864541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr3:66028009-66028417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
169, 17
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr3:71513262-71512848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
117, 80
               

               
Conread position:
               
70-474
               

               
Cow position:
               
chr3:62837407-62836993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
76-376
               

               
Cow position:
               
chr3:36000117-36000410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
192, 8
               

               
Conread position:
               
78-402
               

               
Cow position:
               
chr3:24263262-24262933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
84, 143
               

               
Conread position:
               
82-400
               

               
Cow position:
               
chr3:31418106-31418428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
82-418
               

               
Cow position:
               
chr3:38886755-38887088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 122
               

               
Conread position:
               
84-453
               

               
Cow position:
               
chr3:5886073-5886446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
65, 131
               

               
Conread position:
               
117-402
               

               
Cow position:
               
chr3:50907902-50908192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
68, 99
               

               
Conread position:
               
127-490
               

               
Cow position:
               
chr3:73637900-73638266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
141-395
               

               
Cow position:
               
chr3:4810786-4811031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
47, 94
               

               
Conread position:
               
162-490
               

               
Cow position:
               
chr3:43230306-43230633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
15, 41
               

               
Conread position:
               
177-442
               

               
Cow position:
               
chr3:53908268-53908006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
132, 47
               

               
Conread position:
               
12-490
               

               
Cow position:
               
chr4:49827351-49827809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
262, 29
               

               
Conread position:
               
20-300
               

               
Cow position:
               
chr4:29320185-29319909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
109, 27
               

               
Conread position:
               
35-281
               

               
Cow position:
               
chr4:20889886-20889647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 88
               

               
Conread position:
               
64-371
               

               
Cow position:
               
chr4:43657247-43657546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
68-346
               

               
Cow position:
               
chr4:51958983-51959255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
117, 17
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr4:27519007-27518620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-38
               

               
Alignm gaps (pig, cow):
               
106, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr4:30578092-30578479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr4:56014249-56013862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr4:358249-358677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
112, 145
               

               
Conread position:
               
72-485
               

               
Cow position:
               
chr4:26626214-26625802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
113, 29
               

               
Conread position:
               
75-403
               

               
Cow position:
               
chr4:50871205-50870869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
75-490
               

               
Cow position:
               
chr4:36026898-36026478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
110, 164
               

               
Conread position:
               
78-490
               

               
Cow position:
               
chr4:43317274-43316857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
107, 161
               

               
Conread position:
               
85-418
               

               
Cow position:
               
chr4:54036319-54036654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
15, 139
               

               
Conread position:
               
87-485
               

               
Cow position:
               
chr4:33070457-33070054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
93, 166
               

               
Conread position:
               
89-453
               

               
Cow position:
               
chr4:58882992-58882633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
91, 44
               

               
Conread position:
               
91-490
               

               
Cow position:
               
chr4:59558051-59557664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
94, 90
               

               
Conread position:
               
128-314
               

               
Cow position:
               
chr4:49419915-49419732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
57, 108
               

               
Conread position:
               
129-384
               

               
Cow position:
               
chr4:23049448-23049199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 14
               

               
Conread position:
               
131-452
               

               
Cow position:
               
chr4:44381165-44380839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
25, 87
               

               
Conread position:
               
4-481
               

               
Cow position:
               
chr5:56960967-56961438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
97, 9
               

               
Conread position:
               
6-388
               

               
Cow position:
               
chr5:74475661-74476034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
27, 50
               

               
Conread position:
               
6-448
               

               
Cow position:
               
chr5:20553016-20552575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
457
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
179, 7
               

               
Conread position:
               
12-395
               

               
Cow position:
               
chr5:7678653-7679040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
173, 28
               

               
Conread position:
               
12-485
               

               
Cow position:
               
chr5:53944246-53944715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
13-208
               

               
Cow position:
               
chr5:67621641-67621832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
172, 51
               

               
Conread position:
               
57-399
               

               
Cow position:
               
chr5:5392234-5392576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 35
               

               
Conread position:
               
67-451
               

               
Cow position:
               
chr5:53150574-53150192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 101
               

               
Conread position:
               
68-287
               

               
Cow position:
               
chr5:18580965-18581179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
117, 53
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr5:46778983-46779331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
218, 153
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr5:7276299-7276725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
108, 100
               

               
Conread position:
               
73-326
               

               
Cow position:
               
chr5:68256068-68255818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 46
               

               
Conread position:
               
75-303
               

               
Cow position:
               
chr5:66981649-66981871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
103, 36
               

               
Conread position:
               
75-418
               

               
Cow position:
               
chr5:11153986-11153643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
112, 146
               

               
Conread position:
               
78-456
               

               
Cow position:
               
chr5:25929214-25928845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
107, 161
               

               
Conread position:
               
83-485
               

               
Cow position:
               
chr5:58771389-58770982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
97, 130
               

               
Conread position:
               
84-490
               

               
Cow position:
               
chr5:6152344-6151940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
87, 39
               

               
Conread position:
               
108-403
               

               
Cow position:
               
chr5:46003144-46002848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
66, 105
               

               
Conread position:
               
128-453
               

               
Cow position:
               
chr5:68484945-68485267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
57, 88
               

               
Conread position:
               
179-462
               

               
Cow position:
               
chr5:40225665-40225936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
8, 54
               

               
Conread position:
               
12-286
               

               
Cow position:
               
chr6:65944607-65944345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8e-29
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chr6:9389680-9389946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 35
               

               
Conread position:
               
12-418
               

               
Cow position:
               
chr6:17810781-17810382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
132, 34
               

               
Conread position:
               
13-269
               

               
Cow position:
               
chr6:60721575-60721318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
58, 221
               

               
Conread position:
               
13-287
               

               
Cow position:
               
chr6:23013769-23013489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
58, 36
               

               
Conread position:
               
13-450
               

               
Cow position:
               
chr6:55238249-55238680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
20-388
               

               
Cow position:
               
chr6:7941221-7940865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
163, 35
               

               
Conread position:
               
68-393
               

               
Cow position:
               
chr6:33810395-33810721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-465
               

               
Cow position:
               
chr6:39911930-39912328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
118, 80
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr6:8536689-8536264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
114, 107
               

               
Conread position:
               
75-400
               

               
Cow position:
               
chr6:39435310-39434979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
85-490
               

               
Cow position:
               
chr6:66511139-66511538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
100, 132
               

               
Conread position:
               
124-453
               

               
Cow position:
               
chr6:36230866-36230535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
63, 98
               

               
Conread position:
               
132-389
               

               
Cow position:
               
chr6:44586516-44586766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
53, 42
               

               
Conread position:
               
150-490
               

               
Cow position:
               
chr6:57730848-57730493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
212-443
               

               
Cow position:
               
chr6:46879363-46879591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 95
               

               
Conread position:
               
6-393
               

               
Cow position:
               
chr7:21228249-21227874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
179, 39
               

               
Conread position:
               
6-407
               

               
Cow position:
               
chr7:24527284-24527677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
177, 66
               

               
Conread position:
               
15-276
               

               
Cow position:
               
chr7:593171-592917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
18, 41
               

               
Conread position:
               
57-490
               

               
Cow position:
               
chr7:24805801-24805370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
441
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
277, 11
               

               
Conread position:
               
64-453
               

               
Cow position:
               
chr7:60758504-60758111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
19, 151
               

               
Conread position:
               
68-402
               

               
Cow position:
               
chr7:29744852-29744518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
79, 118
               

               
Conread position:
               
68-450
               

               
Cow position:
               
chr7:113313-113692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr7:7261220-7261644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
117, 23
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr7:59085623-59086046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 156
               

               
Conread position:
               
75-429
               

               
Cow position:
               
chr7:11738453-11738811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
112, 26
               

               
Conread position:
               
75-480
               

               
Cow position:
               
chr7:61825347-61824942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
99, 139
               

               
Conread position:
               
75-490
               

               
Cow position:
               
chr7:59774020-59774435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
211, 100
               

               
Conread position:
               
78-453
               

               
Cow position:
               
chr7:34151650-34152024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
107, 175
               

               
Conread position:
               
84-490
               

               
Cow position:
               
chr7:443548-443137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
101, 129
               

               
Conread position:
               
167-443
               

               
Cow position:
               
chr7:41324396-41324127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 59
               

               
Conread position:
               
6-233
               

               
Cow position:
               
chr8:32814787-32814566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
9-400
               

               
Cow position:
               
chr8:8103469-8103090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
176, 9
               

               
Conread position:
               
13-378
               

               
Cow position:
               
chr8:19576524-19576865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
172, 39
               

               
Conread position:
               
13-401
               

               
Cow position:
               
chr8:23597750-23598119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
172, 27
               

               
Conread position:
               
13-490
               

               
Cow position:
               
chr8:31569951-31569491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
218, 40
               

               
Conread position:
               
15-315
               

               
Cow position:
               
chr8:19443809-19444100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
112, 48
               

               
Conread position:
               
24-418
               

               
Cow position:
               
chr8:1582326-1582721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
27, 200
               

               
Conread position:
               
35-306
               

               
Cow position:
               
chr8:45059051-45058787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
37-388
               

               
Cow position:
               
chr8:41919469-41919127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
148, 27
               

               
Conread position:
               
68-381
               

               
Cow position:
               
chr8:47652916-47652603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
118, 48
               

               
Conread position:
               
68-399
               

               
Cow position:
               
chr8:58318608-58318939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
165, 244
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chr8:6748880-6748531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
117, 54
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr8:3955920-3956306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
112, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chr8:15865423-15865036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-465
               

               
Cow position:
               
chr8:14630347-14629948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
117, 154
               

               
Conread position:
               
73-482
               

               
Cow position:
               
chr8:26485278-26484868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
112, 238
               

               
Conread position:
               
75-438
               

               
Cow position:
               
chr8:4922794-4923158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
99, 138
               

               
Conread position:
               
75-453
               

               
Cow position:
               
chr8:41746657-41746291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
94-388
               

               
Cow position:
               
chr8:8017166-8016871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
91, 140
               

               
Conread position:
               
153-490
               

               
Cow position:
               
chr8:6259016-6258677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 61
               

               
Conread position:
               
153-515
               

               
Cow position:
               
chr8:20851388-20851749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
21, 80
               

               
Conread position:
               
189-464
               

               
Cow position:
               
chr8:47043100-47042831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
91, 43
               

               
Conread position:
               
4-402
               

               
Cow position:
               
chr9:26189016-26189395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
181, 5
               

               
Conread position:
               
4-480
               

               
Cow position:
               
chr9:40130386-40130856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
181, 60
               

               
Conread position:
               
12-381
               

               
Cow position:
               
chr9:23404921-23405282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
113, 29
               

               
Conread position:
               
12-402
               

               
Cow position:
               
chr9:29372097-29372479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 52
               

               
Conread position:
               
13-287
               

               
Cow position:
               
chr9:5573516-5573251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
177, 42
               

               
Conread position:
               
13-418
               

               
Cow position:
               
chr9:34240616-34240216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
55-316
               

               
Cow position:
               
chr9:16012379-16012125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
130, 9
               

               
Conread position:
               
68-396
               

               
Cow position:
               
chr9:60491564-60491886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
119, 52
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr9:28658516-28658089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
117, 166
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chr9:30674604-30675035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
86, 149
               

               
Conread position:
               
75-403
               

               
Cow position:
               
chr9:24723315-24723637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 26
               

               
Conread position:
               
75-418
               

               
Cow position:
               
chr9:778272-777931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
203, 31
               

               
Conread position:
               
75-446
               

               
Cow position:
               
chr9:51591169-51591538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
75-450
               

               
Cow position:
               
chr9:3935105-3934740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
110, 49
               

               
Conread position:
               
91-465
               

               
Cow position:
               
chr9:4940943-4940566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
94, 131
               

               
Conread position:
               
92-401
               

               
Cow position:
               
chr9:33675855-33676154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
93, 19
               

               
Conread position:
               
4-281
               

               
Cow position:
               
chrX:12077710-12077982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
109, 60
               

               
Conread position:
               
5-388
               

               
Cow position:
               
chrX:42043248-42042874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
180, 8
               

               
Conread position:
               
6-278
               

               
Cow position:
               
chrX:37945131-37944873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
180, 46
               

               
Conread position:
               
6-278
               

               
Cow position:
               
chrX:37950816-37951073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
180, 46
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chrX:14217735-14217392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
179, 29
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chrX:10823737-10823471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
173, 58
               

               
Conread position:
               
12-316
               

               
Cow position:
               
chrX:24764985-24764686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
12-490
               

               
Cow position:
               
chrX:10994180-10994661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
175, 52
               

               
Conread position:
               
13-301
               

               
Cow position:
               
chrX:18920036-18920318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
20, 40
               

               
Conread position:
               
13-388
               

               
Cow position:
               
chrX:5321320-5320951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
172, 53
               

               
Conread position:
               
13-402
               

               
Cow position:
               
chrX:24770463-24770080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
168, 51
               

               
Conread position:
               
13-418
               

               
Cow position:
               
chrX:2560556-2560156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
13-418
               

               
Cow position:
               
chrX:9010725-9011125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
161, 32
               

               
Conread position:
               
13-453
               

               
Cow position:
               
chrX:2578813-2579249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
161, 32
               

               
Conread position:
               
13-453
               

               
Cow position:
               
chrX:5333040-5332603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
172, 32
               

               
Conread position:
               
13-455
               

               
Cow position:
               
chrX:4327293-4326861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
172, 33
               

               
Conread position:
               
13-490
               

               
Cow position:
               
chrX:387530-388001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
484
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
174, 46
               

               
Conread position:
               
13-490
               

               
Cow position:
               
chrX:23327407-23326935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 33
               

               
Conread position:
               
13-515
               

               
Cow position:
               
chrX:21729712-21729223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
266, 51
               

               
Conread position:
               
14-388
               

               
Cow position:
               
chrX:1013481-1013845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
110, 38
               

               
Conread position:
               
14-402
               

               
Cow position:
               
chrX:48856140-48855780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
21-373
               

               
Cow position:
               
chrX:23586047-23586396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
166, 31
               

               
Conread position:
               
44-395
               

               
Cow position:
               
chrX:30540052-30539709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
142, 10
               

               
Conread position:
               
46-362
               

               
Cow position:
               
chrX:17986360-17986043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
30, 12
               

               
Conread position:
               
57-490
               

               
Cow position:
               
chrX:17488203-17487771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
128, 7
               

               
Conread position:
               
68-388
               

               
Cow position:
               
chrX:7754348-7754668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
108, 98
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chrX:5298799-5298449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
119, 154
               

               
Conread position:
               
68-418
               

               
Cow position:
               
chrX:12144540-12144890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
4e-37
               

               
Alignm gaps (pig, cow):
               
117, 168
               

               
Conread position:
               
68-440
               

               
Cow position:
               
chrX:39697210-39697579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
117, 145
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chrX:5426531-5426919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
119, 168
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chrX:15622090-15621703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
106, 154
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chrX:23453610-23453224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
122, 107
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chrX:37814592-37814979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
117, 152
               

               
Conread position:
               
68-453
               

               
Cow position:
               
chrX:37851587-37851966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
215, 113
               

               
Conread position:
               
68-490
               

               
Cow position:
               
chrX:22492478-22492903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
109, 145
               

               
Conread position:
               
71-453
               

               
Cow position:
               
chrX:5354855-5354472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
114, 10
               

               
Conread position:
               
72-395
               

               
Cow position:
               
chrX:31524239-31524562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
113, 42
               

               
Conread position:
               
73-450
               

               
Cow position:
               
chrX:13136902-13136534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
79, 106
               

               
Conread position:
               
75-372
               

               
Cow position:
               
chrX:2226382-2226689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
144, 112
               

               
Conread position:
               
76-388
               

               
Cow position:
               
chrX:39713002-39713313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
109, 158
               

               
Conread position:
               
76-403
               

               
Cow position:
               
chrX:11113693-11113368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
110, 17
               

               
Conread position:
               
77-490
               

               
Cow position:
               
chrX:37674509-37674100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
109, 22
               

               
Conread position:
               
88-402
               

               
Cow position:
               
chrX:2606884-2607195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
91-402
               

               
Cow position:
               
chrX:18276991-18277310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-34
               

               
Alignm gaps (pig, cow):
               
94, 125
               

               
Conread position:
               
101-490
               

               
Cow position:
               
chrX:39765037-39765430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
84, 216
               

               
Conread position:
               
126-451
               

               
Cow position:
               
chrX:36908458-36908140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
59, 30
               

               
Conread position:
               
129-443
               

               
Cow position:
               
chrX:36546293-36545980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
54, 84
               

               
Conread position:
               
173-482
               

               
Cow position:
               
chrX:17523681-17523366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 63
               

               
Conread position:
               
175-486
               

               
Cow position:
               
chrX:22963971-22963661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
10, 50
               

               
Conread position:
               
190-490
               

               
Cow position:
               
chrX:25449054-25449353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
24, 35
               

               
Conread position:
               
212-481
               

               
Cow position:
               
chrX:26877774-26878048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
49, 23