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Cow genome map

           
Conread name:
           
rthg15_e22.y1
        

               
Conread position:
               
26-426
               

               
Cow position:
               
chr10:13220595-13220198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 145
               

               
Conread position:
               
171-501
               

               
Cow position:
               
chr10:13839027-13839355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
9e-30
               

               
Alignm gaps (pig, cow):
               
44, 26
               

               
Conread position:
               
215-551
               

               
Cow position:
               
chr10:19544354-19544021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
68, 110
               

               
Conread position:
               
220-509
               

               
Cow position:
               
chr10:9945250-9944968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
65, 102
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr11:35132536-35132955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
439
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
112, 30
               

               
Conread position:
               
10-436
               

               
Cow position:
               
chr11:27374314-27374731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
195, 53
               

               
Conread position:
               
11-438
               

               
Cow position:
               
chr11:16985879-16985454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
58, 34
               

               
Conread position:
               
28-545
               

               
Cow position:
               
chr11:42522974-42522470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
531
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
126, 162
               

               
Conread position:
               
29-551
               

               
Cow position:
               
chr11:9303301-9302775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
545
               

               
Alignm identity:
               
360
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
191, 10
               

               
Conread position:
               
77-281
               

               
Cow position:
               
chr11:80792481-80792279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
207-550
               

               
Cow position:
               
chr11:42363408-42363742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
72, 20
               

               
Conread position:
               
213-501
               

               
Cow position:
               
chr11:12159983-12159691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
8, 72
               

               
Conread position:
               
213-509
               

               
Cow position:
               
chr11:15943684-15943386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
229, 108
               

               
Conread position:
               
214-497
               

               
Cow position:
               
chr11:52314877-52314594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
156, 52
               

               
Conread position:
               
215-458
               

               
Cow position:
               
chr11:65980293-65980056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
67, 6
               

               
Conread position:
               
215-489
               

               
Cow position:
               
chr11:23127234-23126965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
227-549
               

               
Cow position:
               
chr11:66438451-66438132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 119
               

               
Conread position:
               
262-497
               

               
Cow position:
               
chr11:28420850-28421082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
29, 60
               

               
Conread position:
               
27-546
               

               
Cow position:
               
chr12:25100315-25099786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
539
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 88
               

               
Conread position:
               
30-420
               

               
Cow position:
               
chr12:11871020-11871423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
6e-30
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
213-444
               

               
Cow position:
               
chr12:19221937-19222165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
8, 115
               

               
Conread position:
               
213-501
               

               
Cow position:
               
chr12:41465543-41465257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
8, 46
               

               
Conread position:
               
220-416
               

               
Cow position:
               
chr12:25624390-25624194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
62, 102
               

               
Conread position:
               
10-509
               

               
Cow position:
               
chr13:24745702-24745214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
510
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
183, 16
               

               
Conread position:
               
20-508
               

               
Cow position:
               
chr13:28262713-28263197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
156, 47
               

               
Conread position:
               
31-425
               

               
Cow position:
               
chr13:34206245-34205845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
84-389
               

               
Cow position:
               
chr13:56023147-56023443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
138, 22
               

               
Conread position:
               
124-551
               

               
Cow position:
               
chr13:50462038-50461598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
449
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
102, 12
               

               
Conread position:
               
129-547
               

               
Cow position:
               
chr13:21602340-21602763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
23, 107
               

               
Conread position:
               
213-482
               

               
Cow position:
               
chr13:11740154-11739888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
71, 41
               

               
Conread position:
               
213-509
               

               
Cow position:
               
chr13:44653085-44652788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
215-483
               

               
Cow position:
               
chr13:46527187-46527460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
67, 30
               

               
Conread position:
               
20-426
               

               
Cow position:
               
chr14:148032-148450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 7
               

               
Conread position:
               
24-516
               

               
Cow position:
               
chr14:16883441-16882935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
335
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
48, 107
               

               
Conread position:
               
78-406
               

               
Cow position:
               
chr14:22868625-22868307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
125, 46
               

               
Conread position:
               
122-513
               

               
Cow position:
               
chr14:24522435-24522838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
86, 203
               

               
Conread position:
               
213-548
               

               
Cow position:
               
chr14:23823734-23823411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 109
               

               
Conread position:
               
215-508
               

               
Cow position:
               
chr14:28124377-28124090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
155, 51
               

               
Conread position:
               
229-508
               

               
Cow position:
               
chr14:37984206-37984486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
216, 92
               

               
Conread position:
               
10-550
               

               
Cow position:
               
chr15:37457027-37457565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
65, 17
               

               
Conread position:
               
31-334
               

               
Cow position:
               
chr15:16341929-16341629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
161, 41
               

               
Conread position:
               
126-422
               

               
Cow position:
               
chr15:17684828-17684536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
90, 131
               

               
Conread position:
               
215-502
               

               
Cow position:
               
chr15:814967-814677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
69, 103
               

               
Conread position:
               
229-551
               

               
Cow position:
               
chr15:46052306-46052630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
60, 36
               

               
Conread position:
               
10-316
               

               
Cow position:
               
chr16:53271428-53271731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
62, 40
               

               
Conread position:
               
21-482
               

               
Cow position:
               
chr16:48912300-48911838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
473
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
19, 110
               

               
Conread position:
               
27-381
               

               
Cow position:
               
chr16:42671743-42672110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
45, 85
               

               
Conread position:
               
115-489
               

               
Cow position:
               
chr16:56119825-56120207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
95, 21
               

               
Conread position:
               
215-482
               

               
Cow position:
               
chr16:49471925-49472185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr16:36160725-36161015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
67, 180
               

               
Conread position:
               
225-423
               

               
Cow position:
               
chr16:17028012-17027817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
60, 102
               

               
Conread position:
               
229-504
               

               
Cow position:
               
chr16:43954524-43954250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
135, 54
               

               
Conread position:
               
1-504
               

               
Cow position:
               
chr17:3325895-3326383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
68, 7
               

               
Conread position:
               
100-536
               

               
Cow position:
               
chr17:39452823-39453281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
64, 20
               

               
Conread position:
               
229-551
               

               
Cow position:
               
chr17:12978345-12978036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
216, 64
               

               
Conread position:
               
250-520
               

               
Cow position:
               
chr17:4604744-4605005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-22
               

               
Alignm gaps (pig, cow):
               
192, 51
               

               
Conread position:
               
12-509
               

               
Cow position:
               
chr18:32726530-32726055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
322
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
270, 52
               

               
Conread position:
               
27-551
               

               
Cow position:
               
chr18:40081567-40081025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
558
               

               
Alignm identity:
               
368
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
28-498
               

               
Cow position:
               
chr18:6061956-6061473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
68-542
               

               
Cow position:
               
chr18:19405683-19405196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
328
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
147, 54
               

               
Conread position:
               
81-491
               

               
Cow position:
               
chr18:15850335-15850740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
135, 41
               

               
Conread position:
               
131-294
               

               
Cow position:
               
chr18:38173008-38173169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
151, 90
               

               
Conread position:
               
213-509
               

               
Cow position:
               
chr18:30848628-30848330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
69, 113
               

               
Conread position:
               
215-426
               

               
Cow position:
               
chr18:44402747-44402953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
76, 12
               

               
Conread position:
               
215-508
               

               
Cow position:
               
chr18:33142298-33142594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
230-509
               

               
Cow position:
               
chr18:207355-207075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 61
               

               
Conread position:
               
34-379
               

               
Cow position:
               
chr19:43432013-43432351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
213-549
               

               
Cow position:
               
chr19:5652675-5652345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
72, 14
               

               
Conread position:
               
215-491
               

               
Cow position:
               
chr19:23965321-23965591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
159, 63
               

               
Conread position:
               
219-551
               

               
Cow position:
               
chr19:23359702-23360032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 78
               

               
Conread position:
               
10-416
               

               
Cow position:
               
chr2:64580617-64580200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
62, 10
               

               
Conread position:
               
20-377
               

               
Cow position:
               
chr2:18197572-18197225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
79, 7
               

               
Conread position:
               
20-426
               

               
Cow position:
               
chr2:19077090-19077481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
20-497
               

               
Cow position:
               
chr2:44649568-44650052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 101
               

               
Conread position:
               
81-426
               

               
Cow position:
               
chr2:85360452-85360117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
144, 5
               

               
Conread position:
               
119-426
               

               
Cow position:
               
chr2:32372981-32372690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
105, 60
               

               
Conread position:
               
212-497
               

               
Cow position:
               
chr2:33088606-33088888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
213-497
               

               
Cow position:
               
chr2:31899605-31899329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
7, 66
               

               
Conread position:
               
215-504
               

               
Cow position:
               
chr2:38013144-38013427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
63, 71
               

               
Conread position:
               
220-543
               

               
Cow position:
               
chr2:24454003-24453677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
116, 19
               

               
Conread position:
               
229-425
               

               
Cow position:
               
chr2:3593200-3593387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 26
               

               
Conread position:
               
229-426
               

               
Cow position:
               
chr2:44993280-44993474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 60
               

               
Conread position:
               
232-516
               

               
Cow position:
               
chr2:31662586-31662868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
48, 41
               

               
Conread position:
               
20-491
               

               
Cow position:
               
chr20:8367113-8366646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
486
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
198, 35
               

               
Conread position:
               
163-483
               

               
Cow position:
               
chr20:5938201-5937865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 157
               

               
Conread position:
               
213-489
               

               
Cow position:
               
chr20:20410549-20410276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
68, 147
               

               
Conread position:
               
12-421
               

               
Cow position:
               
chr21:45909062-45908661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
213, 52
               

               
Conread position:
               
213-482
               

               
Cow position:
               
chr21:40080418-40080683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 57
               

               
Conread position:
               
214-514
               

               
Cow position:
               
chr21:4789522-4789227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
215-509
               

               
Cow position:
               
chr21:21138607-21138896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
67, 12
               

               
Conread position:
               
249-509
               

               
Cow position:
               
chr21:35774100-35774360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
33, 76
               

               
Conread position:
               
20-546
               

               
Cow position:
               
chr22:40721212-40721768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
567
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
52, 195
               

               
Conread position:
               
23-406
               

               
Cow position:
               
chr22:37210855-37211211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
259, 51
               

               
Conread position:
               
30-501
               

               
Cow position:
               
chr22:41843424-41842962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
42, 20
               

               
Conread position:
               
148-545
               

               
Cow position:
               
chr22:10503108-10503516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
155-536
               

               
Cow position:
               
chr22:13547888-13547496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
72, 174
               

               
Conread position:
               
215-499
               

               
Cow position:
               
chr22:38176047-38176324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
227, 106
               

               
Conread position:
               
36-436
               

               
Cow position:
               
chr23:17186464-17186875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
36, 63
               

               
Conread position:
               
84-518
               

               
Cow position:
               
chr23:18127478-18127036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
460
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
6e-31
               

               
Alignm gaps (pig, cow):
               
110, 38
               

               
Conread position:
               
213-509
               

               
Cow position:
               
chr23:30563370-30563666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
69, 78
               

               
Conread position:
               
229-497
               

               
Cow position:
               
chr23:29402756-29402488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
53, 93
               

               
Conread position:
               
10-468
               

               
Cow position:
               
chr24:17279663-17279217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
469
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 78
               

               
Conread position:
               
216-509
               

               
Cow position:
               
chr24:1490701-1491000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
27, 108
               

               
Conread position:
               
220-414
               

               
Cow position:
               
chr24:16876155-16875958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-22
               

               
Alignm gaps (pig, cow):
               
77, 70
               

               
Conread position:
               
225-500
               

               
Cow position:
               
chr24:43810002-43810275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
220, 51
               

               
Conread position:
               
302-508
               

               
Cow position:
               
chr24:36480832-36480625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
64, 22
               

               
Conread position:
               
11-509
               

               
Cow position:
               
chr25:30150010-30149524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
336
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
207, 44
               

               
Conread position:
               
20-502
               

               
Cow position:
               
chr25:23848879-23848398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
499
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
27-424
               

               
Cow position:
               
chr26:5675935-5676328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
45, 99
               

               
Conread position:
               
213-457
               

               
Cow position:
               
chr26:16162201-16161956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
68, 83
               

               
Conread position:
               
213-547
               

               
Cow position:
               
chr26:8614211-8613884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 75
               

               
Conread position:
               
213-550
               

               
Cow position:
               
chr26:12558591-12558258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
13-543
               

               
Cow position:
               
chr27:28892329-28892882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
564
               

               
Alignm identity:
               
364
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
69, 37
               

               
Conread position:
               
20-426
               

               
Cow position:
               
chr27:17319756-17319342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
195, 62
               

               
Conread position:
               
25-422
               

               
Cow position:
               
chr27:21287131-21286737 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
58, 106
               

               
Conread position:
               
78-537
               

               
Cow position:
               
chr27:1848538-1848068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
482
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
44, 63
               

               
Conread position:
               
20-551
               

               
Cow position:
               
chr28:27678343-27678865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
544
               

               
Alignm identity:
               
340
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
16, 183
               

               
Conread position:
               
122-547
               

               
Cow position:
               
chr28:28749901-28750314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
103, 210
               

               
Conread position:
               
215-497
               

               
Cow position:
               
chr28:34313964-34314243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
74, 65
               

               
Conread position:
               
233-438
               

               
Cow position:
               
chr28:23725436-23725240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
49, 25
               

               
Conread position:
               
1-426
               

               
Cow position:
               
chr29:6213254-6213692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
451
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
10-549
               

               
Cow position:
               
chr29:39368623-39369161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
565
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
183, 10
               

               
Conread position:
               
82-547
               

               
Cow position:
               
chr29:41475900-41475439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
479
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
66, 42
               

               
Conread position:
               
213-550
               

               
Cow position:
               
chr29:24336038-24335699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-29
               

               
Alignm gaps (pig, cow):
               
214, 65
               

               
Conread position:
               
215-403
               

               
Cow position:
               
chr29:37883829-37884008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
215-412
               

               
Cow position:
               
chr29:40445062-40445248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
71, 45
               

               
Conread position:
               
10-426
               

               
Cow position:
               
chr3:63945746-63946163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
62, 53
               

               
Conread position:
               
10-501
               

               
Cow position:
               
chr3:79432050-79431545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
138, 17
               

               
Conread position:
               
20-509
               

               
Cow position:
               
chr3:42052482-42051988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
506
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
52, 105
               

               
Conread position:
               
20-509
               

               
Cow position:
               
chr3:58165747-58166261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
52, 33
               

               
Conread position:
               
137-482
               

               
Cow position:
               
chr3:43306169-43305814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
60, 198
               

               
Conread position:
               
215-412
               

               
Cow position:
               
chr3:43429748-43429550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 12
               

               
Conread position:
               
215-468
               

               
Cow position:
               
chr3:67778985-67779230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
67, 21
               

               
Conread position:
               
215-491
               

               
Cow position:
               
chr3:57537411-57537687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
39, 10
               

               
Conread position:
               
241-551
               

               
Cow position:
               
chr3:6662260-6662574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
37, 50
               

               
Conread position:
               
257-524
               

               
Cow position:
               
chr3:78909246-78908976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
20-403
               

               
Cow position:
               
chr4:50984638-50985002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
202, 52
               

               
Conread position:
               
20-424
               

               
Cow position:
               
chr4:45527332-45527729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
179, 52
               

               
Conread position:
               
29-489
               

               
Cow position:
               
chr4:4438819-4439285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
13, 89
               

               
Conread position:
               
215-550
               

               
Cow position:
               
chr4:47462500-47462837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
67, 128
               

               
Conread position:
               
216-540
               

               
Cow position:
               
chr4:11836976-11836671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
158, 11
               

               
Conread position:
               
229-509
               

               
Cow position:
               
chr4:38930102-38930385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
56, 31
               

               
Conread position:
               
24-437
               

               
Cow position:
               
chr5:72956499-72956084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 24
               

               
Conread position:
               
213-551
               

               
Cow position:
               
chr5:21116531-21116871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 115
               

               
Conread position:
               
27-426
               

               
Cow position:
               
chr6:29312237-29312629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 88
               

               
Conread position:
               
88-547
               

               
Cow position:
               
chr6:54415147-54415633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
47, 82
               

               
Conread position:
               
213-511
               

               
Cow position:
               
chr6:65833575-65833275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 14
               

               
Conread position:
               
219-492
               

               
Cow position:
               
chr6:19336818-19336545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
64, 103
               

               
Conread position:
               
28-411
               

               
Cow position:
               
chr7:63555761-63556147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
85-545
               

               
Cow position:
               
chr7:22758237-22758717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
492
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
112, 37
               

               
Conread position:
               
114-509
               

               
Cow position:
               
chr7:45651716-45652104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
135, 15
               

               
Conread position:
               
212-501
               

               
Cow position:
               
chr7:40124365-40124660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
20, 9
               

               
Conread position:
               
213-509
               

               
Cow position:
               
chr7:66020518-66020231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
152, 69
               

               
Conread position:
               
231-499
               

               
Cow position:
               
chr7:9860816-9860547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
12-471
               

               
Cow position:
               
chr8:31213407-31212954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
477
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
60, 120
               

               
Conread position:
               
28-423
               

               
Cow position:
               
chr8:38391648-38392044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
55, 87
               

               
Conread position:
               
50-545
               

               
Cow position:
               
chr8:13491385-13491894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
28, 82
               

               
Conread position:
               
168-497
               

               
Cow position:
               
chr8:31255776-31256124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 154
               

               
Conread position:
               
215-516
               

               
Cow position:
               
chr8:19865450-19865740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
231, 79
               

               
Conread position:
               
238-538
               

               
Cow position:
               
chr8:21230306-21230605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
208, 53
               

               
Conread position:
               
20-550
               

               
Cow position:
               
chr9:48808699-48808166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
552
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
40, 110
               

               
Conread position:
               
28-425
               

               
Cow position:
               
chr9:7039992-7040384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
57, 93
               

               
Conread position:
               
83-497
               

               
Cow position:
               
chr9:9646830-9647257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
131, 39
               

               
Conread position:
               
130-482
               

               
Cow position:
               
chr9:17070135-17069784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
92, 205
               

               
Conread position:
               
11-390
               

               
Cow position:
               
chrX:18687062-18686680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5e-39
               

               
Alignm gaps (pig, cow):
               
61, 39
               

               
Conread position:
               
20-318
               

               
Cow position:
               
chrX:7540638-7540937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
201, 44
               

               
Conread position:
               
20-433
               

               
Cow position:
               
chrX:27121260-27120830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
52, 87
               

               
Conread position:
               
20-481
               

               
Cow position:
               
chrX:17613475-17613002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
52, 30
               

               
Conread position:
               
21-507
               

               
Cow position:
               
chrX:27344901-27344418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
503
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
51, 67
               

               
Conread position:
               
26-524
               

               
Cow position:
               
chrX:23909873-23909390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
516
               

               
Alignm identity:
               
358
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
189, 48
               

               
Conread position:
               
132-509
               

               
Cow position:
               
chrX:18900446-18900044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
90, 169
               

               
Conread position:
               
169-549
               

               
Cow position:
               
chrX:16405351-16405721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
113, 153
               

               
Conread position:
               
213-425
               

               
Cow position:
               
chrX:1391695-1391903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
69, 109
               

               
Conread position:
               
213-437
               

               
Cow position:
               
chrX:13416680-13416458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
69, 28
               

               
Conread position:
               
213-497
               

               
Cow position:
               
chrX:4411408-4411687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
214-425
               

               
Cow position:
               
chrX:18842214-18842009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-23
               

               
Alignm gaps (pig, cow):
               
75, 68
               

               
Conread position:
               
215-508
               

               
Cow position:
               
chrX:26578429-26578721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
67, 136
               

               
Conread position:
               
215-545
               

               
Cow position:
               
chrX:24080666-24080986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
22, 109
               

               
Conread position:
               
219-424
               

               
Cow position:
               
chrX:27006254-27006455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
63, 103
               

               
Conread position:
               
227-402
               

               
Cow position:
               
chrX:35940482-35940310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
7e-21
               

               
Alignm gaps (pig, cow):
               
55, 101
               

               
Conread position:
               
234-421
               

               
Cow position:
               
chrX:38890768-38890951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 74
               

               
Conread position:
               
238-509
               

               
Cow position:
               
chrX:18553208-18553482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 83