Cow genome map
| Conread name: | rthg26_c5.y1 |
| Conread position: | 23-411 |
| Cow position: | chr1:19993187-19992803 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 61 |
| Conread position: | 36-387 |
| Cow position: | chr1:39482696-39482345 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 108-411 |
| Cow position: | chr1:11292531-11292230 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 70, 88 |
| Conread position: | 108-411 |
| Cow position: | chr1:82564080-82564378 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 185-412 |
| Cow position: | chr1:80556400-80556180 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 115, 158 |
| Conread position: | 29-408 |
| Cow position: | chr10:39881754-39881379 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 199 |
| Conread position: | 29-411 |
| Cow position: | chr10:24978633-24978233 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 340 |
| Conread position: | 31-411 |
| Cow position: | chr10:21075896-21076259 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 11 |
| Conread position: | 97-409 |
| Cow position: | chr10:281035-280724 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 6, 100 |
| Conread position: | 29-411 |
| Cow position: | chr11:10218398-10218024 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 272 |
| Conread position: | 37-411 |
| Cow position: | chr11:36761260-36761629 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 44 |
| Conread position: | 108-411 |
| Cow position: | chr11:1496825-1496535 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 184-411 |
| Cow position: | chr11:40777420-40777195 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 149, 25 |
| Conread position: | 195-411 |
| Cow position: | chr11:41171371-41171157 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 29-256 |
| Cow position: | chr13:21130515-21130742 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-395 |
| Cow position: | chr13:30261480-30261841 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 186-411 |
| Cow position: | chr13:34143279-34143057 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 207-411 |
| Cow position: | chr13:21130731-21130930 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 219-414 |
| Cow position: | chr13:34326264-34326072 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 40-411 |
| Cow position: | chr14:30707570-30707190 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 78 |
| Conread position: | 108-409 |
| Cow position: | chr15:50124756-50124458 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 180, 87 |
| Conread position: | 108-409 |
| Cow position: | chr15:50144677-50144983 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 77, 66 |
| Conread position: | 135-411 |
| Cow position: | chr16:55080493-55080223 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 145 |
| Conread position: | 54-411 |
| Cow position: | chr17:13894160-13893826 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 108-412 |
| Cow position: | chr17:14217617-14217314 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 244 |
| Conread position: | 186-412 |
| Cow position: | chr18:51257678-51257901 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 241-411 |
| Cow position: | chr18:16393890-16393724 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 32-406 |
| Cow position: | chr2:11724832-11725201 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 55, 50 |
| Conread position: | 108-411 |
| Cow position: | chr2:25031400-25031112 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 41 |
| Conread position: | 115-411 |
| Cow position: | chr2:36990969-36991252 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 210, 19 |
| Conread position: | 184-411 |
| Cow position: | chr2:56438580-56438357 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 87, 73 |
| Conread position: | 29-411 |
| Cow position: | chr21:993408-993019 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 271 |
| Conread position: | 29-341 |
| Cow position: | chr22:36581641-36581337 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 53 |
| Conread position: | 34-411 |
| Cow position: | chr22:293703-293338 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 48-478 |
| Cow position: | chr22:41237029-41237464 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 93 |
| Conread position: | 195-411 |
| Cow position: | chr22:44353337-44353123 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 185, 150 |
| Conread position: | 200-411 |
| Cow position: | chr22:5307733-5307942 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 145, 0 |
| Conread position: | 169-406 |
| Cow position: | chr23:13508657-13508887 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 29-408 |
| Cow position: | chr24:14873810-14873434 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 137 |
| Conread position: | 108-411 |
| Cow position: | chr26:9112053-9112354 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 77, 66 |
| Conread position: | 29-411 |
| Cow position: | chr28:10591870-10591508 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 103 |
| Conread position: | 53-411 |
| Cow position: | chr28:17387994-17388350 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 53-411 |
| Cow position: | chr28:17667999-17667643 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 50, 34 |
| Conread position: | 29-408 |
| Cow position: | chr29:16017672-16017304 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 54 |
| Conread position: | 19-405 |
| Cow position: | chr3:18729779-18729385 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 287, 64 |
| Conread position: | 33-455 |
| Cow position: | chr3:32618528-32618103 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 32, 63 |
| Conread position: | 46-411 |
| Cow position: | chr3:17936673-17936311 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 108-411 |
| Cow position: | chr3:19938365-19938666 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 41, 51 |
| Conread position: | 108-411 |
| Cow position: | chr3:57856188-57856489 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 243, 0 |
| Conread position: | 186-411 |
| Cow position: | chr3:19757429-19757207 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 216-411 |
| Cow position: | chr3:7168164-7168356 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 20-409 |
| Cow position: | chr4:41427789-41428178 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 53, 92 |
| Conread position: | 29-411 |
| Cow position: | chr4:1497563-1497195 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 140 |
| Conread position: | 108-411 |
| Cow position: | chr4:6269365-6269071 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 70, 88 |
| Conread position: | 21-411 |
| Cow position: | chr5:28569961-28570349 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 114, 81 |
| Conread position: | 75-411 |
| Cow position: | chr5:24109717-24109385 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 195 |
| Conread position: | 3-421 |
| Cow position: | chr6:34024224-34024634 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 125 |
| Conread position: | 108-411 |
| Cow position: | chr6:57870511-57870210 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 237, 0 |
| Conread position: | 29-411 |
| Cow position: | chr7:30120032-30119654 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 265, 105 |
| Conread position: | 23-411 |
| Cow position: | chr8:39160001-39160388 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 197 |
| Conread position: | 29-411 |
| Cow position: | chr8:24876997-24876632 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 104 |
| Conread position: | 29-411 |
| Cow position: | chr8:38579604-38579221 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 134 |
| Conread position: | 23-411 |
| Cow position: | chr9:59509942-59510329 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 21 |
| Conread position: | 32-411 |
| Cow position: | chr9:54994648-54995005 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 56, 51 |
| Conread position: | 154-408 |
| Cow position: | chr9:64158596-64158843 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 54 |
| Conread position: | 58-411 |
| Cow position: | chrX:29812992-29813338 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 108-411 |
| Cow position: | chrX:3376891-3376595 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 108-411 |
| Cow position: | chrX:28506610-28506310 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 223, 66 |