Cow genome map

Conread name: rtra05_e3r1.y1

Conread position: 1-325
Cow position: chr1:37409073-37408734 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 248
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 29, 83

Conread position: 14-263
Cow position: chr1:9441486-9441216 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 34, 126

Conread position: 28-257
Cow position: chr1:2344407-2344633 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 160, 45

Conread position: 40-270
Cow position: chr1:21372449-21372673 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 46

Conread position: 125-285
Cow position: chr1:39486862-39487024 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 22, 135

Conread position: 1-263
Cow position: chr10:32123554-32123301 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 194
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 31, 66

Conread position: 40-256
Cow position: chr10:28771109-28770883 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 175
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 42, 31

Conread position: 40-263
Cow position: chr10:3739273-3739486 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 175
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 46, 0

Conread position: 40-302
Cow position: chr10:40623714-40623978 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 192
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 45, 0

Conread position: 3-271
Cow position: chr11:24246722-24247004 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 202
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 206

Conread position: 40-271
Cow position: chr11:47174589-47174362 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 171
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 107, 176

Conread position: 40-325
Cow position: chr11:22727823-22728097 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 174

Conread position: 2-243
Cow position: chr12:20221122-20221360 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 173
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 61, 28

Conread position: 34-260
Cow position: chr12:23423421-23423200 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 174
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 48, 6

Conread position: 37-271
Cow position: chr12:374451-374691 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 183
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 98, 49

Conread position: 37-291
Cow position: chr12:26723424-26723686 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 243

Conread position: 1-221
Cow position: chr13:21117673-21117444 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 64, 120

Conread position: 32-222
Cow position: chr13:14823619-14823424 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 96, 8

Conread position: 37-271
Cow position: chr13:12450063-12450296 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 49

Conread position: 45-261
Cow position: chr13:51917381-51917606 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 175
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 37, 69

Conread position: 46-299
Cow position: chr13:41263600-41263353 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 84

Conread position: 37-257
Cow position: chr14:4723902-4724116 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 162
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 50, 0

Conread position: 37-271
Cow position: chr14:22088069-22087843 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 175
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 50, 0

Conread position: 37-322
Cow position: chr14:13983415-13983129 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 80

Conread position: 32-324
Cow position: chr16:27144017-27144303 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 8

Conread position: 37-260
Cow position: chr16:46530913-46530691 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 110, 47

Conread position: 69-260
Cow position: chr16:27961563-27961763 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 13, 5

Conread position: 175-312
Cow position: chr16:5017957-5017826 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 144-271
Cow position: chr17:24603987-24603860 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 37-243
Cow position: chr18:24452061-24451850 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 163
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 101, 30

Conread position: 37-260
Cow position: chr18:43024713-43024930 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 60, 101

Conread position: 1-243
Cow position: chr19:1800273-1800027 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 194
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 48, 141

Conread position: 32-256
Cow position: chr19:32215054-32215274 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 110, 5

Conread position: 1-271
Cow position: chr2:26194497-26194226 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 48, 96

Conread position: 3-252
Cow position: chr2:36131129-36131389 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 193
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 46, 144

Conread position: 6-325
Cow position: chr2:72560357-72560665 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 227
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 26, 10

Conread position: 34-325
Cow position: chr2:79191883-79191594 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 83

Conread position: 37-263
Cow position: chr2:7139894-7140117 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 104, 50

Conread position: 87-240
Cow position: chr2:16282240-16282089 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 98

Conread position: 1-188
Cow position: chr20:36935555-36935741 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 132
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 62, 136

Conread position: 2-263
Cow position: chr20:27359178-27359441 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 45, 79

Conread position: 32-260
Cow position: chr20:15313255-15313025 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 5

Conread position: 37-257
Cow position: chr20:27192543-27192327 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 167
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 111, 68

Conread position: 1-321
Cow position: chr21:36445765-36446072 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 236
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 28, 93

Conread position: 100-324
Cow position: chr21:29071127-29070899 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 162, 52

Conread position: 37-260
Cow position: chr22:41102-40881 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 168
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 110, 36

Conread position: 2-256
Cow position: chr23:25398875-25398606 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 195
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 30, 209

Conread position: 37-261
Cow position: chr23:12894559-12894337 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 150, 0

Conread position: 34-263
Cow position: chr24:36849452-36849227 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 172
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 11, 106

Conread position: 37-324
Cow position: chr24:37176588-37176301 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 210
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 104, 54

Conread position: 87-238
Cow position: chr24:6133901-6133752 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 25

Conread position: 149-263
Cow position: chr24:7291821-7291934 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 88, 0

Conread position: 45-260
Cow position: chr25:18346853-18347068 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 165
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 37, 110

Conread position: 1-213
Cow position: chr26:2954489-2954699 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 155
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 55, 88

Conread position: 1-322
Cow position: chr26:3000322-3000008 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 51

Conread position: 57-325
Cow position: chr26:30281177-30280930 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 92-271
Cow position: chr26:29174711-29174532 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 144
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 51, 38

Conread position: 93-222
Cow position: chr26:4267062-4266930 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 0

Conread position: 1-271
Cow position: chr27:4595275-4595547 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 201
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 31, 8

Conread position: 1-271
Cow position: chr27:8415958-8416224 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 57, 17

Conread position: 34-260
Cow position: chr27:27157081-27156847 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 11, 153

Conread position: 1-263
Cow position: chr29:36188007-36187732 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 97

Conread position: 87-279
Cow position: chr29:38012022-38012208 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 60, 37

Conread position: 1-260
Cow position: chr3:2879857-2880120 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 27, 217

Conread position: 1-271
Cow position: chr3:28152026-28151738 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 22

Conread position: 32-226
Cow position: chr3:83629303-83629490 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 112, 8

Conread position: 37-325
Cow position: chr3:31080941-31080659 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 45, 102

Conread position: 6-224
Cow position: chr4:57079010-57078795 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 21

Conread position: 32-254
Cow position: chr4:43754842-43754616 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 13, 113

Conread position: 1-257
Cow position: chr5:53952790-53953050 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 87

Conread position: 1-292
Cow position: chr5:55421140-55420839 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 214
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 45, 165

Conread position: 32-257
Cow position: chr5:38636494-38636720 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 167
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 5

Conread position: 34-207
Cow position: chr5:12579135-12578967 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 37, 0

Conread position: 144-263
Cow position: chr5:53687944-53687823 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 85, 0

Conread position: 1-260
Cow position: chr6:44643278-44643531 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 182
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 62, 29

Conread position: 6-257
Cow position: chr6:33398705-33398457 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 33, 83

Conread position: 15-260
Cow position: chr6:32132625-32132883 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 30, 15

Conread position: 37-324
Cow position: chr6:36498291-36498567 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 135, 42

Conread position: 40-256
Cow position: chr6:38260650-38260427 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 57, 196

Conread position: 88-325
Cow position: chr6:11450074-11449838 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 56, 150

Conread position: 119-260
Cow position: chr6:42045693-42045836 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 119
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 28, 0

Conread position: 144-271
Cow position: chr6:41636794-41636667 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 37-255
Cow position: chr7:51022783-51022554 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 36, 136

Conread position: 47-325
Cow position: chr7:62524715-62524997 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 45, 227

Conread position: 131-243
Cow position: chr7:51630236-51630124 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 96
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1-226
Cow position: chr8:14372752-14372515 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 174
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 32, 190

Conread position: 54-226
Cow position: chr8:24204936-24205110 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 90, 150

Conread position: 15-239
Cow position: chr9:41856276-41856040 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 176
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 25, 0

Conread position: 32-250
Cow position: chr9:61310009-61309793 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 166
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 115, 5

Conread position: 37-313
Cow position: chr9:26234348-26234630 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 242

Conread position: 40-260
Cow position: chr9:1480314-1480522 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 46, 0

Conread position: 45-271
Cow position: chr9:2105913-2105691 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 97