Cow genome map
| Conread name: | rtra17_a20r1.y1 |
| Conread position: | 249-509 |
| Cow position: | chr1:42278883-42278624 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 282-519 |
| Cow position: | chr1:15947499-15947738 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 14 |
| Conread position: | 293-499 |
| Cow position: | chr1:71671460-71671254 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 46 |
| Conread position: | 1-265 |
| Cow position: | chr10:28898485-28898221 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 264-495 |
| Cow position: | chr10:24640684-24640917 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 21, 76 |
| Conread position: | 276-509 |
| Cow position: | chr10:29738304-29738540 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 7, 65 |
| Conread position: | 303-519 |
| Cow position: | chr10:34539623-34539840 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 304-507 |
| Cow position: | chr10:5289305-5289503 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 304-526 |
| Cow position: | chr10:51099863-51099644 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 109, 34 |
| Conread position: | 327-518 |
| Cow position: | chr10:28898198-28898009 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 82, 11 |
| Conread position: | 264-508 |
| Cow position: | chr11:26131691-26131445 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 273-520 |
| Cow position: | chr11:26862326-26862574 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 21, 87 |
| Conread position: | 281-517 |
| Cow position: | chr11:57584884-57585121 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 59 |
| Conread position: | 303-508 |
| Cow position: | chr11:46112710-46112913 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 304-519 |
| Cow position: | chr12:21786573-21786363 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 276-512 |
| Cow position: | chr13:59643950-59644188 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 161 |
| Conread position: | 282-507 |
| Cow position: | chr13:37107018-37107246 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 309-516 |
| Cow position: | chr13:58788693-58788895 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 123, 29 |
| Conread position: | 274-507 |
| Cow position: | chr15:23416378-23416149 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 20 |
| Conread position: | 282-540 |
| Cow position: | chr15:47918327-47918067 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 57 |
| Conread position: | 294-503 |
| Cow position: | chr15:29717759-29717962 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 16, 104 |
| Conread position: | 296-508 |
| Cow position: | chr16:24936209-24936001 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 263-519 |
| Cow position: | chr17:40664550-40664808 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 11 |
| Conread position: | 301-508 |
| Cow position: | chr17:13279740-13279534 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 112, 5 |
| Conread position: | 323-501 |
| Cow position: | chr17:26850374-26850549 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 96, 18 |
| Conread position: | 266-516 |
| Cow position: | chr18:13232748-13232497 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 274-517 |
| Cow position: | chr18:11405742-11405494 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 28, 66 |
| Conread position: | 279-459 |
| Cow position: | chr18:9908411-9908591 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 29, 61 |
| Conread position: | 282-508 |
| Cow position: | chr18:2314914-2314684 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 288-499 |
| Cow position: | chr19:7119293-7119082 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 273-516 |
| Cow position: | chr2:64730647-64730885 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 31, 67 |
| Conread position: | 281-521 |
| Cow position: | chr2:46311565-46311325 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 289-503 |
| Cow position: | chr2:72102701-72102917 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 303-508 |
| Cow position: | chr20:7548524-7548323 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 35 |
| Conread position: | 303-508 |
| Cow position: | chr20:14356639-14356438 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 303-518 |
| Cow position: | chr21:2244544-2244334 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 116, 35 |
| Conread position: | 306-504 |
| Cow position: | chr21:35581660-35581854 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 118, 27 |
| Conread position: | 274-505 |
| Cow position: | chr22:35328240-35328007 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 288-499 |
| Cow position: | chr22:12231576-12231788 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 294-512 |
| Cow position: | chr22:26132820-26133031 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 47 |
| Conread position: | 296-504 |
| Cow position: | chr22:15716698-15716495 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 127, 21 |
| Conread position: | 282-509 |
| Cow position: | chr25:11545505-11545733 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 65 |
| Conread position: | 303-507 |
| Cow position: | chr25:40920415-40920211 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 94, 75 |
| Conread position: | 303-519 |
| Cow position: | chr25:7589103-7588897 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 303-542 |
| Cow position: | chr25:28185582-28185818 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 35 |
| Conread position: | 309-508 |
| Cow position: | chr25:32353515-32353316 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 104, 29 |
| Conread position: | 293-509 |
| Cow position: | chr27:2340807-2340589 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 302-509 |
| Cow position: | chr27:26891660-26891455 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 111, 15 |
| Conread position: | 277-513 |
| Cow position: | chr28:2861686-2861917 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 136, 11 |
| Conread position: | 293-516 |
| Cow position: | chr29:36812192-36812411 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 294-507 |
| Cow position: | chr29:7741036-7741248 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 132, 44 |
| Conread position: | 303-513 |
| Cow position: | chr29:2632200-2631994 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 267-520 |
| Cow position: | chr3:17070021-17069772 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 7 |
| Conread position: | 245-498 |
| Cow position: | chr4:11892273-11892528 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 99 |
| Conread position: | 289-513 |
| Cow position: | chr4:45553270-45553045 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 303-500 |
| Cow position: | chr5:18477760-18477564 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 131, 35 |
| Conread position: | 303-505 |
| Cow position: | chr5:38874486-38874285 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 128, 35 |
| Conread position: | 324-508 |
| Cow position: | chr6:30715805-30715621 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 92, 12 |
| Conread position: | 291-513 |
| Cow position: | chr7:68110714-68110935 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 139, 12 |
| Conread position: | 293-508 |
| Cow position: | chr7:51926530-51926318 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 309-508 |
| Cow position: | chr7:8046993-8046796 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 125, 39 |
| Conread position: | 322-505 |
| Cow position: | chr7:48663124-48663305 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 288-503 |
| Cow position: | chr8:14601313-14601529 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 280-520 |
| Cow position: | chr9:35737928-35737685 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 30, 129 |
| Conread position: | 281-478 |
| Cow position: | chr9:5485093-5484894 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 158 |
| Conread position: | 265-528 |
| Cow position: | chrX:41998884-41999151 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 274-513 |
| Cow position: | chrX:39130257-39130493 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 51 |
| Conread position: | 276-513 |
| Cow position: | chrX:38203257-38203021 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 8, 65 |
| Conread position: | 294-507 |
| Cow position: | chrX:46084253-46084463 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 124, 20 |
| Conread position: | 303-503 |
| Cow position: | chrX:41193505-41193704 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 113, 43 |