Cow genome map
| Conread name: | unkn-MI-P-AY0-nac-g-10-0-UI.s1 |
| Conread position: | 3-271 |
| Cow position: | chr1:49117051-49117314 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 18 |
| Conread position: | 1-296 |
| Cow position: | chr10:21374646-21374937 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 3-298 |
| Cow position: | chr10:45497677-45497978 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 1-293 |
| Cow position: | chr11:27698813-27698513 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 17 |
| Conread position: | 2-296 |
| Cow position: | chr11:15572339-15572630 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 0 |
| Conread position: | 27-298 |
| Cow position: | chr13:42853358-42853095 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 31-298 |
| Cow position: | chr13:5010833-5011091 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 49-296 |
| Cow position: | chr13:12608709-12608462 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-296 |
| Cow position: | chr14:40215025-40215320 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-226 |
| Cow position: | chr14:4814901-4814705 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 56-275 |
| Cow position: | chr14:3876523-3876301 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 58 |
| Conread position: | 9-180 |
| Cow position: | chr15:16480429-16480258 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 143 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-298 |
| Cow position: | chr15:31878780-31878519 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 69-296 |
| Cow position: | chr15:25698694-25698918 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 176-295 |
| Cow position: | chr15:16479879-16479760 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-282 |
| Cow position: | chr19:8228760-8228492 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 62-147 |
| Cow position: | chr19:13689414-13689329 (view UCSC Genome Browser custom track) |
| Alignm length: | 86 |
| Alignm identity: | 76 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 144-296 |
| Cow position: | chr19:13688928-13688776 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 137 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-99 |
| Cow position: | chr2:73624231-73624327 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 81 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-296 |
| Cow position: | chr2:76600290-76599997 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 191 |
| Conread position: | 89-289 |
| Cow position: | chr2:73624604-73624801 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1-296 |
| Cow position: | chr20:34867021-34867300 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 69 |
| Conread position: | 67-298 |
| Cow position: | chr21:12761912-12762127 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 31-298 |
| Cow position: | chr22:4377415-4377147 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 224 |
| Conread position: | 64-274 |
| Cow position: | chr22:23416382-23416580 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 5-296 |
| Cow position: | chr23:15601890-15602180 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 272 |
| Conread position: | 54-298 |
| Cow position: | chr23:34782284-34782527 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 51-175 |
| Cow position: | chr24:43883941-43884065 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 67-294 |
| Cow position: | chr24:662269-662047 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 30-298 |
| Cow position: | chr25:10725363-10725096 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 29, 98 |
| Conread position: | 54-296 |
| Cow position: | chr25:5634682-5634925 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 63-298 |
| Cow position: | chr25:25907667-25907441 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 186, 68 |
| Conread position: | 1-296 |
| Cow position: | chr29:38914912-38915207 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-238 |
| Cow position: | chr29:39259426-39259195 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 51-134 |
| Cow position: | chr29:36033130-36033213 (view UCSC Genome Browser custom track) |
| Alignm length: | 84 |
| Alignm identity: | 76 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-296 |
| Cow position: | chr3:39004972-39005264 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-298 |
| Cow position: | chr3:10450739-10451004 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 20 |
| Conread position: | 54-298 |
| Cow position: | chr3:84854965-84855204 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 2-293 |
| Cow position: | chr4:23038087-23037796 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-202 |
| Cow position: | chr5:41161339-41161141 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 19-293 |
| Cow position: | chr5:70058872-70058598 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-265 |
| Cow position: | chr5:69940643-69940413 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 92, 43 |
| Conread position: | 32-286 |
| Cow position: | chr5:28449054-28448805 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 73 |
| Conread position: | 189-298 |
| Cow position: | chr5:41159279-41159173 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1-298 |
| Cow position: | chr6:19935843-19936119 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 61 |
| Conread position: | 2-293 |
| Cow position: | chr7:26846174-26845885 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 3-246 |
| Cow position: | chr7:8798395-8798638 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-181 |
| Cow position: | chr7:46883668-46883822 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 1-295 |
| Cow position: | chr8:51909744-51909454 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 27-298 |
| Cow position: | chr8:30089692-30089951 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1-296 |
| Cow position: | chr9:20046989-20047284 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-296 |
| Cow position: | chr9:23430618-23430326 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 0 |
| Conread position: | 1-296 |
| Cow position: | chrX:2605672-2605378 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-296 |
| Cow position: | chrX:20993446-20993151 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |