Cow genome map
| Conread name: | unkn-MI-P-AY0-nah-f-02-0-UI.s1 |
| Conread position: | 3-289 |
| Cow position: | chr1:43452022-43452303 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 9-219 |
| Cow position: | chr1:73000091-72999882 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 102, 78 |
| Conread position: | 39-189 |
| Cow position: | chr1:57268736-57268589 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 172-288 |
| Cow position: | chr1:57268379-57268262 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-162 |
| Cow position: | chr10:63810441-63810599 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 10-288 |
| Cow position: | chr10:49577187-49576924 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 34-288 |
| Cow position: | chr10:27427876-27427615 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 53 |
| Conread position: | 3-289 |
| Cow position: | chr11:8088258-8088543 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 1-289 |
| Cow position: | chr12:36190567-36190851 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 1-289 |
| Cow position: | chr13:57446165-57445882 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 113-289 |
| Cow position: | chr13:30335195-30335018 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-165 |
| Cow position: | chr14:47646258-47646100 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-289 |
| Cow position: | chr14:40765956-40766241 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 34 |
| Conread position: | 1-278 |
| Cow position: | chr16:4810603-4810878 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 1-289 |
| Cow position: | chr16:42015432-42015718 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 8-288 |
| Cow position: | chr17:14363051-14362763 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 19, 27 |
| Conread position: | 1-288 |
| Cow position: | chr18:28965260-28964961 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 24, 89 |
| Conread position: | 23-289 |
| Cow position: | chr18:48134594-48134332 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 70-288 |
| Cow position: | chr18:48796960-48797185 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 7-158 |
| Cow position: | chr2:15272252-15272101 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 2-289 |
| Cow position: | chr20:31844148-31843862 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 21 |
| Conread position: | 4-209 |
| Cow position: | chr20:39632415-39632214 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 165 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 1-289 |
| Cow position: | chr21:47002665-47002949 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 35-288 |
| Cow position: | chr21:31307823-31307573 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 23-139 |
| Cow position: | chr22:37737049-37736935 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 58-288 |
| Cow position: | chr22:26292174-26291945 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 182-288 |
| Cow position: | chr22:37736930-37736825 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 5-289 |
| Cow position: | chr23:22236333-22236053 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-286 |
| Cow position: | chr24:27204541-27204257 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 78 |
| Conread position: | 1-289 |
| Cow position: | chr24:40277948-40278229 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 3-273 |
| Cow position: | chr24:39172401-39172669 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 84 |
| Conread position: | 122-273 |
| Cow position: | chr24:38465283-38465434 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-288 |
| Cow position: | chr28:17516948-17516666 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 3-289 |
| Cow position: | chr28:25598269-25598548 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 4-289 |
| Cow position: | chr29:25665013-25664729 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 1-127 |
| Cow position: | chr3:16292792-16292669 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 109, 59 |
| Conread position: | 5-289 |
| Cow position: | chr3:8193992-8194283 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 5-289 |
| Cow position: | chr3:27171505-27171784 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 30 |
| Conread position: | 17-139 |
| Cow position: | chr3:76264056-76263936 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 23-289 |
| Cow position: | chr3:43331071-43331329 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 135-289 |
| Cow position: | chr3:16292593-16292440 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 1-289 |
| Cow position: | chr4:44408653-44408937 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 78 |
| Conread position: | 1-284 |
| Cow position: | chr5:39888754-39888464 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 1-289 |
| Cow position: | chr5:62643192-62642911 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 3-139 |
| Cow position: | chr5:44765809-44765942 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 8-257 |
| Cow position: | chr5:43891885-43892130 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 4-137 |
| Cow position: | chr6:6780475-6780607 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 1-154 |
| Cow position: | chr7:40162811-40162659 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 34 |
| Conread position: | 3-254 |
| Cow position: | chr7:44481118-44480873 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 5-288 |
| Cow position: | chr7:56669904-56670198 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 77, 152 |
| Conread position: | 23-288 |
| Cow position: | chr8:26863517-26863250 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 203, 14 |
| Conread position: | 1-289 |
| Cow position: | chr9:51908559-51908844 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 9-288 |
| Cow position: | chr9:34159622-34159883 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 178, 25 |
| Conread position: | 4-288 |
| Cow position: | chrX:20170848-20170579 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |