RNAcop
Downloads
RNAcop is available as standalone command-line tool (implemented in C in the ViennaRNA package framework). Furthermore, we provide utility scripts for data processsing and visualization, as well as the heuristic findgoodregion for selecting flanking regions. The RNAcop frame work can be downloaded as a bundle including utility scripts and findgoodregion.
RNAcop bundle:
| RNAcop-1.03-bundle.tar.gz | RNAcop frame work (using ViennaRNA 2.1.9) |
| RNAcop-1.02-bundle.tar.gz | RNAcop frame work |
RNAcop version history:
| RNAcop-1.03.tar.gz | changed to ViennaRNA 2.1.9 |
| RNAcop-1.02.tar.gz | uses ViennaRNA 2.1.1; changes in command-line options |
| RNAcop-1.01.tar.gz | a version only for test purposes excluding dangling end energy contributions; contains some minor changes |
| RNAcop-1.0.tar.gz | initial functional version |
RNAcop utility:
| utility.tar.gz | utility scripts for data processing and visualiziation |
RNAcop findgoodregion (heuristic for selecting flanking regions):
| findgoodregion-0.2.tar.gz | fixed output if only optimal solution present;changed default parameters |
| findgoodregion-0.1.tar.gz | initial release |
For comments, suggestions for improvement or bug reports contact Nikolai Hecker: hecker(at)rth.dk