# Makefile.in generated by automake 1.11.3 from Makefile.am.
# man/Makefile.  Generated from Makefile.in by configure.

# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011 Free Software
# Foundation, Inc.
# This Makefile.in is free software; the Free Software Foundation
# gives unlimited permission to copy and/or distribute it,
# with or without modifications, as long as this notice is preserved.

# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
# PARTICULAR PURPOSE.



pkgdatadir = $(datadir)/RNAcop
pkgincludedir = $(includedir)/RNAcop
pkglibdir = $(libdir)/RNAcop
pkglibexecdir = $(libexecdir)/RNAcop
am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
install_sh_DATA = $(install_sh) -c -m 644
install_sh_PROGRAM = $(install_sh) -c
install_sh_SCRIPT = $(install_sh) -c
INSTALL_HEADER = $(INSTALL_DATA)
transform = $(program_transform_name)
NORMAL_INSTALL = :
PRE_INSTALL = :
POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
build_triplet = x86_64-unknown-linux-gnu
host_triplet = x86_64-unknown-linux-gnu
subdir = man
DIST_COMMON = $(dist_man_MANS) $(srcdir)/Makefile.am \
	$(srcdir)/Makefile.in $(srcdir)/cmdlopt.sh.in texinfo.tex
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
am__aclocal_m4_deps = $(top_srcdir)/acinclude.m4 \
	$(top_srcdir)/m4/package.m4 $(top_srcdir)/configure.ac
am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
	$(ACLOCAL_M4)
mkinstalldirs = $(install_sh) -d
CONFIG_HEADER = $(top_builddir)/config.h
CONFIG_CLEAN_FILES = cmdlopt.sh
CONFIG_CLEAN_VPATH_FILES =
AM_V_GEN = $(am__v_GEN_$(V))
am__v_GEN_ = $(am__v_GEN_$(AM_DEFAULT_VERBOSITY))
am__v_GEN_0 = @echo "  GEN   " $@;
AM_V_at = $(am__v_at_$(V))
am__v_at_ = $(am__v_at_$(AM_DEFAULT_VERBOSITY))
am__v_at_0 = @
SOURCES =
DIST_SOURCES =
INFO_DEPS = $(srcdir)/RNAlib.info
am__TEXINFO_TEX_DIR = $(srcdir)
DVIS = RNAlib.dvi
PDFS = RNAlib.pdf
PSS = RNAlib.ps
HTMLS = RNAlib.html
TEXINFOS = RNAlib.texinfo
TEXI2DVI = texi2dvi
TEXI2PDF = $(TEXI2DVI) --pdf --batch
MAKEINFOHTML = $(MAKEINFO) --html
AM_MAKEINFOHTMLFLAGS = $(AM_MAKEINFOFLAGS)
DVIPS = dvips
am__installdirs = "$(DESTDIR)$(infodir)" "$(DESTDIR)$(man1dir)"
am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
am__vpath_adj = case $$p in \
    $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
    *) f=$$p;; \
  esac;
am__strip_dir = f=`echo $$p | sed -e 's|^.*/||'`;
am__install_max = 40
am__nobase_strip_setup = \
  srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*|]/\\\\&/g'`
am__nobase_strip = \
  for p in $$list; do echo "$$p"; done | sed -e "s|$$srcdirstrip/||"
am__nobase_list = $(am__nobase_strip_setup); \
  for p in $$list; do echo "$$p $$p"; done | \
  sed "s| $$srcdirstrip/| |;"' / .*\//!s/ .*/ ./; s,\( .*\)/[^/]*$$,\1,' | \
  $(AWK) 'BEGIN { files["."] = "" } { files[$$2] = files[$$2] " " $$1; \
    if (++n[$$2] == $(am__install_max)) \
      { print $$2, files[$$2]; n[$$2] = 0; files[$$2] = "" } } \
    END { for (dir in files) print dir, files[dir] }'
am__base_list = \
  sed '$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;$$!N;s/\n/ /g' | \
  sed '$$!N;$$!N;$$!N;$$!N;s/\n/ /g'
am__uninstall_files_from_dir = { \
  test -z "$$files" \
    || { test ! -d "$$dir" && test ! -f "$$dir" && test ! -r "$$dir"; } \
    || { echo " ( cd '$$dir' && rm -f" $$files ")"; \
         $(am__cd) "$$dir" && rm -f $$files; }; \
  }
man1dir = $(mandir)/man1
NROFF = nroff
MANS = $(dist_man_MANS)
DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
ACLOCAL = ${SHELL} /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02/missing --run aclocal-1.11
AMTAR = $${TAR-tar}
AM_DEFAULT_VERBOSITY = 0
AUTOCONF = ${SHELL} /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02/missing --run autoconf
AUTOHEADER = ${SHELL} /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02/missing --run autoheader
AUTOMAKE = ${SHELL} /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02/missing --run automake-1.11
AWK = mawk
CC = gcc
CCDEPMODE = depmode=gcc3
CFLAGS = -g -O2
CPP = gcc -E
CPPFLAGS = 
CXX = g++
CXXCPP = g++ -E
CXXDEPMODE = depmode=gcc3
CXXFLAGS = -g -O2
CYGPATH_W = echo
DEFS = -DHAVE_CONFIG_H
DEPDIR = .deps
DOXYGEN_CMD_LATEX = 
DOXYGEN_CMD_MAKEINDEX = 
DOXYGEN_CONF = doxygen.conf
DOXYGEN_DOCDIR = doc
DOXYGEN_GENERATE_HTML = 
DOXYGEN_GENERATE_LATEX = 
DOXYGEN_HAVE_DOT = 
DOXYGEN_PROJECT_NAME = RNAlib-1.0
DOXYGEN_SRCDIR = .
DOXYGEN_WITH_PDFLATEX = 
ECHO_C = 
ECHO_N = -n
ECHO_T = 
EGREP = /bin/grep -E
EXEEXT = 
FPIC = -fpic
GREP = /bin/grep
INSTALL = /usr/bin/install -c
INSTALL_DATA = ${INSTALL} -m 644
INSTALL_PROGRAM = ${INSTALL}
INSTALL_SCRIPT = ${INSTALL}
INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
ISODATE = 2015-01-14
LDFLAGS = 
LIBOBJS = 
LIBS = -lm 
LTLIBOBJS = 
MAKEINFO = ${SHELL} /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02/missing --run makeinfo
MKDIR_P = /bin/mkdir -p
OBJEXT = o
OPENMP_CFLAGS = -fopenmp
PACKAGE = RNAcop
PACKAGE_BUGREPORT = rna@tbi.univie.ac.at
PACKAGE_NAME = RNAcop
PACKAGE_STRING = RNAcop 1.0
PACKAGE_TARNAME = RNAcop
PACKAGE_URL = 
PACKAGE_VERSION = 1.0
PATH_SEPARATOR = :
PERLPREFIX = 
PERL_INTERFACE = Perl
POW_LIB = 
PerlCmd = /usr/bin/perl
RANLIB = ranlib
REFERENCE_MANUAL_PDF_NAME = RNAlib-1.0.pdf
REFERENCE_MANUAL_TAGFILE = RNAlib-1.0.tag
SET_MAKE = 
SHELL = /bin/bash
STRIP = 
VERSION = 1.0
abs_builddir = /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02/man
abs_srcdir = /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02/man
abs_top_builddir = /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02
abs_top_srcdir = /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02
ac_ct_CC = gcc
ac_ct_CXX = g++
am__include = include
am__leading_dot = .
am__quote = 
am__tar = $${TAR-tar} chof - "$$tardir"
am__untar = $${TAR-tar} xf -
bindir = ${exec_prefix}/bin
build = x86_64-unknown-linux-gnu
build_alias = 
build_cpu = x86_64
build_os = linux-gnu
build_vendor = unknown
builddir = .
datadir = ${datarootdir}
datarootdir = ${prefix}/share
docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
dot = /usr/bin/dot
doxygen = no
dvidir = ${docdir}
egrep = /bin/egrep
exec_prefix = ${prefix}
host = x86_64-unknown-linux-gnu
host_alias = 
host_cpu = x86_64
host_os = linux-gnu
host_vendor = unknown
htmldir = ${docdir}
includedir = ${prefix}/include
infodir = ${datarootdir}/info
install_sh = ${SHELL} /home/hecker/rnacf/software/RNAcop-1.02-bundle/RNAcop-1.02/install-sh
latex = /usr/bin/latex
libdir = ${exec_prefix}/lib
libexecdir = ${exec_prefix}/libexec
localedir = ${datarootdir}/locale
localstatedir = ${prefix}/var
makeindex = /usr/bin/makeindex
mandir = ${datarootdir}/man
mkdir_p = /bin/mkdir -p
oldincludedir = /usr/include
pdfdir = ${docdir}
pdflatex = /usr/bin/pdflatex
perl = /usr/bin/perl
prefix = /usr/local
program_transform_name = s,x,x,
psdir = ${docdir}
sbindir = ${exec_prefix}/sbin
sharedstatedir = ${prefix}/com
srcdir = .
sysconfdir = ${prefix}/etc
target_alias = 
top_build_prefix = ../
top_builddir = ..
top_srcdir = ..
info_TEXINFOS = RNAlib.texinfo
dist_man_MANS = RNAcop.1
all: all-am

.SUFFIXES:
.SUFFIXES: .dvi .html .info .pdf .ps .texinfo
$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
	@for dep in $?; do \
	  case '$(am__configure_deps)' in \
	    *$$dep*) \
	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
	        && { if test -f $@; then exit 0; else break; fi; }; \
	      exit 1;; \
	  esac; \
	done; \
	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu man/Makefile'; \
	$(am__cd) $(top_srcdir) && \
	  $(AUTOMAKE) --gnu man/Makefile
.PRECIOUS: Makefile
Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
	@case '$?' in \
	  *config.status*) \
	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
	  *) \
	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
	esac;

$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh

$(top_srcdir)/configure:  $(am__configure_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
$(am__aclocal_m4_deps):
cmdlopt.sh: $(top_builddir)/config.status $(srcdir)/cmdlopt.sh.in
	cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@

.texinfo.info:
	restore=: && backupdir="$(am__leading_dot)am$$$$" && \
	am__cwd=`pwd` && $(am__cd) $(srcdir) && \
	rm -rf $$backupdir && mkdir $$backupdir && \
	if ($(MAKEINFO) --version) >/dev/null 2>&1; then \
	  for f in $@ $@-[0-9] $@-[0-9][0-9] $(@:.info=).i[0-9] $(@:.info=).i[0-9][0-9]; do \
	    if test -f $$f; then mv $$f $$backupdir; restore=mv; else :; fi; \
	  done; \
	else :; fi && \
	cd "$$am__cwd"; \
	if $(MAKEINFO) $(AM_MAKEINFOFLAGS) $(MAKEINFOFLAGS) -I $(srcdir) \
	 -o $@ $<; \
	then \
	  rc=0; \
	  $(am__cd) $(srcdir); \
	else \
	  rc=$$?; \
	  $(am__cd) $(srcdir) && \
	  $$restore $$backupdir/* `echo "./$@" | sed 's|[^/]*$$||'`; \
	fi; \
	rm -rf $$backupdir; exit $$rc

.texinfo.dvi:
	TEXINPUTS="$(am__TEXINFO_TEX_DIR)$(PATH_SEPARATOR)$$TEXINPUTS" \
	MAKEINFO='$(MAKEINFO) $(AM_MAKEINFOFLAGS) $(MAKEINFOFLAGS) -I $(srcdir)' \
	$(TEXI2DVI) $<

.texinfo.pdf:
	TEXINPUTS="$(am__TEXINFO_TEX_DIR)$(PATH_SEPARATOR)$$TEXINPUTS" \
	MAKEINFO='$(MAKEINFO) $(AM_MAKEINFOFLAGS) $(MAKEINFOFLAGS) -I $(srcdir)' \
	$(TEXI2PDF) $<

.texinfo.html:
	rm -rf $(@:.html=.htp)
	if $(MAKEINFOHTML) $(AM_MAKEINFOHTMLFLAGS) $(MAKEINFOFLAGS) -I $(srcdir) \
	 -o $(@:.html=.htp) $<; \
	then \
	  rm -rf $@; \
	  if test ! -d $(@:.html=.htp) && test -d $(@:.html=); then \
	    mv $(@:.html=) $@; else mv $(@:.html=.htp) $@; fi; \
	else \
	  if test ! -d $(@:.html=.htp) && test -d $(@:.html=); then \
	    rm -rf $(@:.html=); else rm -Rf $(@:.html=.htp) $@; fi; \
	  exit 1; \
	fi
$(srcdir)/RNAlib.info: RNAlib.texinfo 
RNAlib.dvi: RNAlib.texinfo 
RNAlib.pdf: RNAlib.texinfo 
RNAlib.html: RNAlib.texinfo 
.dvi.ps:
	TEXINPUTS="$(am__TEXINFO_TEX_DIR)$(PATH_SEPARATOR)$$TEXINPUTS" \
	$(DVIPS) -o $@ $<

uninstall-dvi-am:
	@$(NORMAL_UNINSTALL)
	@list='$(DVIS)'; test -n "$(dvidir)" || list=; \
	for p in $$list; do \
	  $(am__strip_dir) \
	  echo " rm -f '$(DESTDIR)$(dvidir)/$$f'"; \
	  rm -f "$(DESTDIR)$(dvidir)/$$f"; \
	done

uninstall-html-am:
	@$(NORMAL_UNINSTALL)
	@list='$(HTMLS)'; test -n "$(htmldir)" || list=; \
	for p in $$list; do \
	  $(am__strip_dir) \
	  echo " rm -rf '$(DESTDIR)$(htmldir)/$$f'"; \
	  rm -rf "$(DESTDIR)$(htmldir)/$$f"; \
	done

uninstall-info-am:
	@$(PRE_UNINSTALL)
	@if test -d '$(DESTDIR)$(infodir)' && \
	    (install-info --version && \
	     install-info --version 2>&1 | sed 1q | grep -i -v debian) >/dev/null 2>&1; then \
	  list='$(INFO_DEPS)'; \
	  for file in $$list; do \
	    relfile=`echo "$$file" | sed 's|^.*/||'`; \
	    echo " install-info --info-dir='$(DESTDIR)$(infodir)' --remove '$(DESTDIR)$(infodir)/$$relfile'"; \
	    if install-info --info-dir="$(DESTDIR)$(infodir)" --remove "$(DESTDIR)$(infodir)/$$relfile"; \
	    then :; else test ! -f "$(DESTDIR)$(infodir)/$$relfile" || exit 1; fi; \
	  done; \
	else :; fi
	@$(NORMAL_UNINSTALL)
	@list='$(INFO_DEPS)'; \
	for file in $$list; do \
	  relfile=`echo "$$file" | sed 's|^.*/||'`; \
	  relfile_i=`echo "$$relfile" | sed 's|\.info$$||;s|$$|.i|'`; \
	  (if test -d "$(DESTDIR)$(infodir)" && cd "$(DESTDIR)$(infodir)"; then \
	     echo " cd '$(DESTDIR)$(infodir)' && rm -f $$relfile $$relfile-[0-9] $$relfile-[0-9][0-9] $$relfile_i[0-9] $$relfile_i[0-9][0-9]"; \
	     rm -f $$relfile $$relfile-[0-9] $$relfile-[0-9][0-9] $$relfile_i[0-9] $$relfile_i[0-9][0-9]; \
	   else :; fi); \
	done

uninstall-pdf-am:
	@$(NORMAL_UNINSTALL)
	@list='$(PDFS)'; test -n "$(pdfdir)" || list=; \
	for p in $$list; do \
	  $(am__strip_dir) \
	  echo " rm -f '$(DESTDIR)$(pdfdir)/$$f'"; \
	  rm -f "$(DESTDIR)$(pdfdir)/$$f"; \
	done

uninstall-ps-am:
	@$(NORMAL_UNINSTALL)
	@list='$(PSS)'; test -n "$(psdir)" || list=; \
	for p in $$list; do \
	  $(am__strip_dir) \
	  echo " rm -f '$(DESTDIR)$(psdir)/$$f'"; \
	  rm -f "$(DESTDIR)$(psdir)/$$f"; \
	done

dist-info: $(INFO_DEPS)
	@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
	list='$(INFO_DEPS)'; \
	for base in $$list; do \
	  case $$base in \
	    $(srcdir)/*) base=`echo "$$base" | sed "s|^$$srcdirstrip/||"`;; \
	  esac; \
	  if test -f $$base; then d=.; else d=$(srcdir); fi; \
	  base_i=`echo "$$base" | sed 's|\.info$$||;s|$$|.i|'`; \
	  for file in $$d/$$base $$d/$$base-[0-9] $$d/$$base-[0-9][0-9] $$d/$$base_i[0-9] $$d/$$base_i[0-9][0-9]; do \
	    if test -f $$file; then \
	      relfile=`expr "$$file" : "$$d/\(.*\)"`; \
	      test -f "$(distdir)/$$relfile" || \
		cp -p $$file "$(distdir)/$$relfile"; \
	    else :; fi; \
	  done; \
	done

mostlyclean-aminfo:
	-rm -rf RNAlib.aux RNAlib.cp RNAlib.cps RNAlib.fn RNAlib.fns RNAlib.ky \
	  RNAlib.kys RNAlib.log RNAlib.pg RNAlib.pgs RNAlib.tmp \
	  RNAlib.toc RNAlib.tp RNAlib.tps RNAlib.vr RNAlib.vrs

clean-aminfo:
	-test -z "RNAlib.dvi RNAlib.pdf RNAlib.ps RNAlib.html" \
	|| rm -rf RNAlib.dvi RNAlib.pdf RNAlib.ps RNAlib.html

maintainer-clean-aminfo:
	@list='$(INFO_DEPS)'; for i in $$list; do \
	  i_i=`echo "$$i" | sed 's|\.info$$||;s|$$|.i|'`; \
	  echo " rm -f $$i $$i-[0-9] $$i-[0-9][0-9] $$i_i[0-9] $$i_i[0-9][0-9]"; \
	  rm -f $$i $$i-[0-9] $$i-[0-9][0-9] $$i_i[0-9] $$i_i[0-9][0-9]; \
	done
install-man1: $(dist_man_MANS)
	@$(NORMAL_INSTALL)
	test -z "$(man1dir)" || $(MKDIR_P) "$(DESTDIR)$(man1dir)"
	@list=''; test -n "$(man1dir)" || exit 0; \
	{ for i in $$list; do echo "$$i"; done; \
	l2='$(dist_man_MANS)'; for i in $$l2; do echo "$$i"; done | \
	  sed -n '/\.1[a-z]*$$/p'; \
	} | while read p; do \
	  if test -f $$p; then d=; else d="$(srcdir)/"; fi; \
	  echo "$$d$$p"; echo "$$p"; \
	done | \
	sed -e 'n;s,.*/,,;p;h;s,.*\.,,;s,^[^1][0-9a-z]*$$,1,;x' \
	      -e 's,\.[0-9a-z]*$$,,;$(transform);G;s,\n,.,' | \
	sed 'N;N;s,\n, ,g' | { \
	list=; while read file base inst; do \
	  if test "$$base" = "$$inst"; then list="$$list $$file"; else \
	    echo " $(INSTALL_DATA) '$$file' '$(DESTDIR)$(man1dir)/$$inst'"; \
	    $(INSTALL_DATA) "$$file" "$(DESTDIR)$(man1dir)/$$inst" || exit $$?; \
	  fi; \
	done; \
	for i in $$list; do echo "$$i"; done | $(am__base_list) | \
	while read files; do \
	  test -z "$$files" || { \
	    echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(man1dir)'"; \
	    $(INSTALL_DATA) $$files "$(DESTDIR)$(man1dir)" || exit $$?; }; \
	done; }

uninstall-man1:
	@$(NORMAL_UNINSTALL)
	@list=''; test -n "$(man1dir)" || exit 0; \
	files=`{ for i in $$list; do echo "$$i"; done; \
	l2='$(dist_man_MANS)'; for i in $$l2; do echo "$$i"; done | \
	  sed -n '/\.1[a-z]*$$/p'; \
	} | sed -e 's,.*/,,;h;s,.*\.,,;s,^[^1][0-9a-z]*$$,1,;x' \
	      -e 's,\.[0-9a-z]*$$,,;$(transform);G;s,\n,.,'`; \
	dir='$(DESTDIR)$(man1dir)'; $(am__uninstall_files_from_dir)
tags: TAGS
TAGS:

ctags: CTAGS
CTAGS:


distdir: $(DISTFILES)
	@list='$(MANS)'; if test -n "$$list"; then \
	  list=`for p in $$list; do \
	    if test -f $$p; then d=; else d="$(srcdir)/"; fi; \
	    if test -f "$$d$$p"; then echo "$$d$$p"; else :; fi; done`; \
	  if test -n "$$list" && \
	    grep 'ab help2man is required to generate this page' $$list >/dev/null; then \
	    echo "error: found man pages containing the \`missing help2man' replacement text:" >&2; \
	    grep -l 'ab help2man is required to generate this page' $$list | sed 's/^/         /' >&2; \
	    echo "       to fix them, install help2man, remove and regenerate the man pages;" >&2; \
	    echo "       typically \`make maintainer-clean' will remove them" >&2; \
	    exit 1; \
	  else :; fi; \
	else :; fi
	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
	list='$(DISTFILES)'; \
	  dist_files=`for file in $$list; do echo $$file; done | \
	  sed -e "s|^$$srcdirstrip/||;t" \
	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
	case $$dist_files in \
	  */*) $(MKDIR_P) `echo "$$dist_files" | \
			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
			   sort -u` ;; \
	esac; \
	for file in $$dist_files; do \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  if test -d $$d/$$file; then \
	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
	    if test -d "$(distdir)/$$file"; then \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -fpR $(srcdir)/$$file "$(distdir)$$dir" || exit 1; \
	      find "$(distdir)/$$file" -type d ! -perm -700 -exec chmod u+rwx {} \;; \
	    fi; \
	    cp -fpR $$d/$$file "$(distdir)$$dir" || exit 1; \
	  else \
	    test -f "$(distdir)/$$file" \
	    || cp -p $$d/$$file "$(distdir)/$$file" \
	    || exit 1; \
	  fi; \
	done
	$(MAKE) $(AM_MAKEFLAGS) \
	  top_distdir="$(top_distdir)" distdir="$(distdir)" \
	  dist-info
check-am: all-am
check: check-am
all-am: Makefile $(INFO_DEPS) $(MANS)
installdirs:
	for dir in "$(DESTDIR)$(infodir)" "$(DESTDIR)$(man1dir)"; do \
	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
	done
install: install-am
install-exec: install-exec-am
install-data: install-data-am
uninstall: uninstall-am

install-am: all-am
	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am

installcheck: installcheck-am
install-strip:
	if test -z '$(STRIP)'; then \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	      install; \
	else \
	  $(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
	    install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
	    "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'" install; \
	fi
mostlyclean-generic:

clean-generic:

distclean-generic:
	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
	-test . = "$(srcdir)" || test -z "$(CONFIG_CLEAN_VPATH_FILES)" || rm -f $(CONFIG_CLEAN_VPATH_FILES)

maintainer-clean-generic:
	@echo "This command is intended for maintainers to use"
	@echo "it deletes files that may require special tools to rebuild."
clean: clean-am

clean-am: clean-aminfo clean-generic mostlyclean-am

distclean: distclean-am
	-rm -f Makefile
distclean-am: clean-am distclean-generic

dvi: dvi-am

dvi-am: $(DVIS)

html: html-am

html-am: $(HTMLS)

info: info-am

info-am: $(INFO_DEPS)

install-data-am: install-info-am install-man

install-dvi: install-dvi-am

install-dvi-am: $(DVIS)
	@$(NORMAL_INSTALL)
	test -z "$(dvidir)" || $(MKDIR_P) "$(DESTDIR)$(dvidir)"
	@list='$(DVIS)'; test -n "$(dvidir)" || list=; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  echo "$$d$$p"; \
	done | $(am__base_list) | \
	while read files; do \
	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(dvidir)'"; \
	  $(INSTALL_DATA) $$files "$(DESTDIR)$(dvidir)" || exit $$?; \
	done
install-exec-am:

install-html: install-html-am

install-html-am: $(HTMLS)
	@$(NORMAL_INSTALL)
	test -z "$(htmldir)" || $(MKDIR_P) "$(DESTDIR)$(htmldir)"
	@list='$(HTMLS)'; list2=; test -n "$(htmldir)" || list=; \
	for p in $$list; do \
	  if test -f "$$p" || test -d "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  $(am__strip_dir) \
	  d2=$$d$$p; \
	  if test -d "$$d2"; then \
	    echo " $(MKDIR_P) '$(DESTDIR)$(htmldir)/$$f'"; \
	    $(MKDIR_P) "$(DESTDIR)$(htmldir)/$$f" || exit 1; \
	    echo " $(INSTALL_DATA) '$$d2'/* '$(DESTDIR)$(htmldir)/$$f'"; \
	    $(INSTALL_DATA) "$$d2"/* "$(DESTDIR)$(htmldir)/$$f" || exit $$?; \
	  else \
	    list2="$$list2 $$d2"; \
	  fi; \
	done; \
	test -z "$$list2" || { echo "$$list2" | $(am__base_list) | \
	while read files; do \
	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(htmldir)'"; \
	  $(INSTALL_DATA) $$files "$(DESTDIR)$(htmldir)" || exit $$?; \
	done; }
install-info: install-info-am

install-info-am: $(INFO_DEPS)
	@$(NORMAL_INSTALL)
	test -z "$(infodir)" || $(MKDIR_P) "$(DESTDIR)$(infodir)"
	@srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`; \
	list='$(INFO_DEPS)'; test -n "$(infodir)" || list=; \
	for file in $$list; do \
	  case $$file in \
	    $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
	  esac; \
	  if test -f $$file; then d=.; else d=$(srcdir); fi; \
	  file_i=`echo "$$file" | sed 's|\.info$$||;s|$$|.i|'`; \
	  for ifile in $$d/$$file $$d/$$file-[0-9] $$d/$$file-[0-9][0-9] \
	               $$d/$$file_i[0-9] $$d/$$file_i[0-9][0-9] ; do \
	    if test -f $$ifile; then \
	      echo "$$ifile"; \
	    else : ; fi; \
	  done; \
	done | $(am__base_list) | \
	while read files; do \
	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(infodir)'"; \
	  $(INSTALL_DATA) $$files "$(DESTDIR)$(infodir)" || exit $$?; done
	@$(POST_INSTALL)
	@am__run_installinfo=yes; \
	case $$AM_UPDATE_INFO_DIR in \
	  n|no|NO) am__run_installinfo=no;; \
	  *) (install-info --version) >/dev/null 2>&1 \
	       || am__run_installinfo=no;; \
	esac; \
	if test $$am__run_installinfo = yes; then \
	  list='$(INFO_DEPS)'; test -n "$(infodir)" || list=; \
	  for file in $$list; do \
	    relfile=`echo "$$file" | sed 's|^.*/||'`; \
	    echo " install-info --info-dir='$(DESTDIR)$(infodir)' '$(DESTDIR)$(infodir)/$$relfile'";\
	    install-info --info-dir="$(DESTDIR)$(infodir)" "$(DESTDIR)$(infodir)/$$relfile" || :;\
	  done; \
	else : ; fi
install-man: install-man1

install-pdf: install-pdf-am

install-pdf-am: $(PDFS)
	@$(NORMAL_INSTALL)
	test -z "$(pdfdir)" || $(MKDIR_P) "$(DESTDIR)$(pdfdir)"
	@list='$(PDFS)'; test -n "$(pdfdir)" || list=; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  echo "$$d$$p"; \
	done | $(am__base_list) | \
	while read files; do \
	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(pdfdir)'"; \
	  $(INSTALL_DATA) $$files "$(DESTDIR)$(pdfdir)" || exit $$?; done
install-ps: install-ps-am

install-ps-am: $(PSS)
	@$(NORMAL_INSTALL)
	test -z "$(psdir)" || $(MKDIR_P) "$(DESTDIR)$(psdir)"
	@list='$(PSS)'; test -n "$(psdir)" || list=; \
	for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  echo "$$d$$p"; \
	done | $(am__base_list) | \
	while read files; do \
	  echo " $(INSTALL_DATA) $$files '$(DESTDIR)$(psdir)'"; \
	  $(INSTALL_DATA) $$files "$(DESTDIR)$(psdir)" || exit $$?; done
installcheck-am:

maintainer-clean: maintainer-clean-am
	-rm -f Makefile
maintainer-clean-am: distclean-am maintainer-clean-aminfo \
	maintainer-clean-generic maintainer-clean-local

mostlyclean: mostlyclean-am

mostlyclean-am: mostlyclean-aminfo mostlyclean-generic

pdf: pdf-am

pdf-am: $(PDFS)

ps: ps-am

ps-am: $(PSS)

uninstall-am: uninstall-dvi-am uninstall-html-am uninstall-info-am \
	uninstall-man uninstall-pdf-am uninstall-ps-am

uninstall-man: uninstall-man1

.MAKE: install-am install-strip

.PHONY: all all-am check check-am clean clean-aminfo clean-generic \
	dist-info distclean distclean-generic distdir dvi dvi-am html \
	html-am info info-am install install-am install-data \
	install-data-am install-dvi install-dvi-am install-exec \
	install-exec-am install-html install-html-am install-info \
	install-info-am install-man install-man1 install-pdf \
	install-pdf-am install-ps install-ps-am install-strip \
	installcheck installcheck-am installdirs maintainer-clean \
	maintainer-clean-aminfo maintainer-clean-generic \
	maintainer-clean-local mostlyclean mostlyclean-aminfo \
	mostlyclean-generic pdf pdf-am ps ps-am uninstall uninstall-am \
	uninstall-dvi-am uninstall-html-am uninstall-info-am \
	uninstall-man uninstall-man1 uninstall-pdf-am uninstall-ps-am


# remove all generated man pages
maintainer-clean-local:
	-rm -f $(dist_man_MANS)

RNAcop.1: ../Progs/RNAcop.ggo
	help2man -N -S "ViennaRNA package 2.1.1" ../Progs/RNAcop > RNAcop.1

# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
