INFERNAL1/a [1.1.1 | July 2014] NAME hg18chrX.15503936-15504123.fasta.motif.h1 STATES 151 NODES 38 CLEN 49 W 172 ALPH RNA RF no CONS yes MAP yes DATE Tue Oct 13 14:14:43 2015 COM [1] cmbuild hg18chrX.15503936-15504123.fasta.motif.h1.1.cm /home/people/seemann/projects/CMfinder/cm/f/chrX/hg18chrX.15503936-15504123/hg18chrX.15503936-15504123.fasta.motif.h1.1 COM [2] cmcalibrate --cpu 14 hg18chrX.15503936-15504123.fasta.motif.h1.1.cm PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 11 EFFN 9.026123 CKSUM 2654204508 NULL 0.000 0.000 0.000 0.000 EFP7GF -11.0229 0.72147 ECMLC 0.49877 -6.93293 4.86221 1600000 430687 0.002786 ECMGC 0.40583 -11.88205 3.09665 1600000 174608 0.002291 ECMLI 0.48945 -5.27565 6.24619 1600000 337531 0.003555 ECMGI 0.43471 -7.94707 5.32166 1600000 127972 0.003126 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 172 329 -8.540 -8.747 -0.017 -7.162 IL 1 1 2 1 4 1 9 175 331 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 9 174 331 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 9 173 329 -9.814 -0.007 -8.131 0.437 -2.002 -2.288 1.132 D 4 2 3 5 3 0 4 171 328 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 7 173 330 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 74 - A - - MR 6 5 3 8 5 1 8 172 328 -8.490 -0.015 -8.306 -8.518 -9.409 1.608 -1.437 -1.415 -2.273 D 7 5 3 8 5 0 3 170 326 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 6 172 328 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 73 G C - - MP 9 8 3 13 6 2 8 171 327 -9.930 -9.870 -0.012 -8.646 -8.926 -9.321 -6.845 -4.314 -7.398 -1.406 -8.298 -5.717 -3.084 -7.646 -5.681 3.850 -5.936 -0.318 -3.373 -5.927 -5.284 -6.245 ML 10 8 3 13 6 1 5 169 325 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 5 168 325 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 2 165 322 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 6 170 327 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 6 170 326 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 72 A U - - MP 15 14 6 19 6 2 6 169 325 -9.930 -9.870 -0.125 -8.646 -8.926 -3.705 -5.341 -4.009 -5.527 3.561 -7.520 -8.617 -2.990 -5.573 -5.103 -0.629 -5.766 1.593 -2.975 -6.777 -4.838 -4.134 ML 16 14 6 19 6 1 5 167 323 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 5 166 323 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 164 321 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 5 168 325 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 6 168 325 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 71 G C - - MP 21 20 6 25 6 2 8 167 324 -9.818 -9.757 -0.013 -8.534 -8.813 -9.208 -0.102 -3.217 -4.518 0.362 -5.663 -5.201 -0.847 -5.042 -4.651 3.268 -5.006 1.348 -1.090 -4.491 -2.833 -3.419 ML 22 20 6 25 6 1 4 165 321 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 4 164 321 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 2 164 321 -10.749 -9.447 -0.477 -5.926 -5.944 -2.019 IL 25 25 5 25 6 1 4 166 323 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 4 166 323 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 70 A U - - MP 27 26 6 31 6 2 8 165 322 -9.930 -9.870 -0.012 -8.646 -8.926 -9.321 -6.542 -5.260 -5.710 3.930 -7.957 -9.244 -3.594 -5.609 -6.299 -1.900 -6.925 -2.509 -3.890 -7.891 -5.479 -4.871 ML 28 26 6 31 6 1 4 163 320 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 4 162 319 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 159 316 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 4 164 321 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 4 164 321 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 69 A U - - MP 33 32 6 37 6 2 7 163 320 -9.930 -9.870 -0.012 -8.646 -8.926 -9.321 -5.090 -3.881 -5.213 3.447 -6.399 -7.142 -1.996 0.263 -4.949 1.412 -5.552 -1.257 -2.188 -5.986 -3.888 -3.928 ML 34 32 6 37 6 1 3 161 318 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 161 317 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 158 315 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 4 162 319 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 4 162 319 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 68 A U - - MP 39 38 6 43 4 2 5 161 318 -8.540 -8.747 -0.017 -7.162 -0.195 1.178 -5.262 3.476 -6.621 -7.526 -2.480 -5.366 -4.930 -0.476 -5.571 -1.277 -2.533 -6.195 -4.247 -3.967 ML 40 38 6 43 4 1 3 160 317 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 2 159 316 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 1 158 314 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 4 161 318 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 3 160 317 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 45 44 6 47 3 1 4 159 316 -9.486 -0.007 -8.140 -1.188 -2.557 -3.300 1.718 D 46 44 6 47 3 0 0 156 313 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 3 159 316 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - A - - - ML 48 47 3 50 3 1 3 158 315 -9.486 -0.007 -8.140 1.791 -3.687 -1.425 -3.481 D 49 47 3 50 3 0 0 156 312 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 3 159 315 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - - - ML 51 50 3 53 3 1 2 157 314 -9.486 -0.180 -3.106 -0.712 -0.662 -2.438 1.364 D 52 50 3 53 3 0 0 155 311 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 3 158 314 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 54 53 3 56 3 1 3 156 313 -9.314 -0.008 -7.968 -3.881 -3.535 -4.676 1.929 D 55 53 3 56 3 0 0 154 310 -8.170 -3.683 -0.122 IL 56 56 3 56 3 1 3 157 314 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 57 56 3 59 3 1 2 155 312 -9.314 -0.008 -7.968 -1.327 -3.877 1.781 -3.363 D 58 56 3 59 3 0 0 153 310 -8.170 -3.683 -0.122 IL 59 59 3 59 3 1 2 156 313 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 60 59 3 62 3 1 1 154 311 -9.314 -0.297 -2.439 1.596 -3.225 -0.437 -2.918 D 61 59 3 62 3 0 0 153 310 -8.170 -0.274 -2.562 IL 62 62 3 62 3 1 1 155 312 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - C - - - ML 63 62 3 65 3 1 2 154 310 -9.234 -0.009 -7.888 -4.364 1.936 -4.991 -3.436 D 64 62 3 65 3 0 0 152 309 -8.567 -0.203 -2.959 IL 65 65 3 65 3 1 1 154 311 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 66 65 3 68 3 1 1 153 309 -9.814 -0.007 -8.131 1.961 -5.114 -4.558 -4.820 D 67 65 3 68 3 0 0 151 308 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 1 153 310 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 67 - U - - MR 69 68 3 71 3 1 1 152 308 -9.814 -0.432 -1.957 -0.796 -1.017 -1.259 1.329 D 70 68 3 71 3 0 0 150 306 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 152 309 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 66 - A - - MR 72 71 3 74 3 1 1 151 308 -9.391 -0.009 -7.709 1.937 -4.431 -3.902 -4.147 D 73 71 3 74 3 0 0 149 305 -9.159 -1.754 -0.511 IR 74 74 3 74 3 1 1 151 308 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 65 - C - - MR 75 74 3 77 3 1 1 150 307 -9.527 -0.008 -7.844 -2.315 1.442 -3.282 -0.031 D 76 74 3 77 3 0 0 148 305 -8.750 -3.928 -0.102 IR 77 77 3 77 3 1 1 150 307 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 64 - U - - MR 78 77 3 80 3 1 1 149 306 -3.483 -0.403 -2.695 -0.207 -1.919 -2.372 1.420 D 79 77 3 80 3 0 0 148 305 -8.750 -0.199 -2.980 IR 80 80 3 80 3 1 1 150 307 -1.333 -0.789 -5.363 0.000 0.000 0.000 0.000 [ MATR 21 ] - 61 - U - - MR 81 80 3 83 3 1 1 148 305 -9.624 -0.008 -7.942 -0.763 -2.232 -2.857 1.613 D 82 80 3 83 3 0 0 146 302 -8.322 -3.500 -0.138 IR 83 83 3 83 3 1 1 149 305 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 60 - A - - MR 84 83 3 86 5 1 1 147 304 -8.306 -0.017 -8.121 -8.334 -9.225 1.773 -3.445 -1.392 -3.207 D 85 83 3 86 5 0 0 146 302 -6.719 -0.235 -4.345 -5.776 -3.770 IR 86 86 3 86 5 1 1 147 304 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 59 G U - - MP 87 86 3 91 6 2 2 146 303 -9.930 -9.870 -0.012 -8.646 -8.926 -9.321 -5.308 -3.951 -5.500 1.003 -7.490 -8.199 -2.898 -5.556 -5.075 1.350 -5.710 3.444 -2.901 -6.638 -4.766 -4.110 ML 88 86 3 91 6 1 1 142 298 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 140 297 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 131 287 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 145 302 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 145 301 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 58 u a - - MP 93 92 6 97 6 2 2 144 301 -9.930 -9.870 -0.012 -8.646 -8.926 -9.321 -3.595 -3.596 -3.689 -0.051 -3.108 -4.490 1.103 -3.648 -0.281 1.156 -4.211 -1.707 2.900 -3.862 0.379 -2.672 ML 94 92 6 97 6 1 1 137 293 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 135 292 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 123 280 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 143 299 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 143 299 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 57 G U - - MP 99 98 6 103 6 2 2 142 299 -2.101 -3.440 -0.581 -8.646 -8.926 -9.321 -5.228 -3.950 -5.398 1.802 -6.608 -7.596 -2.122 -5.420 -5.018 -0.476 -5.625 3.206 1.001 -6.373 -4.060 -4.039 ML 100 98 6 103 6 1 1 117 274 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 113 269 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 99 256 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 153 310 -0.170 -8.297 -3.246 -9.952 -10.728 -10.389 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 30 49 -3.379 -0.232 -6.890 -5.058 -6.164 0.000 0.000 0.000 0.000 [ MATP 26 ] 36 55 u a - - MP 105 104 6 109 6 2 2 29 48 -9.930 -2.907 -0.218 -8.646 -8.926 -9.321 -4.971 -4.002 -5.084 0.944 -5.256 -6.699 -0.819 -5.025 -4.827 -0.409 -5.419 2.365 2.833 -5.767 -2.842 -3.799 ML 106 104 6 109 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 28 47 -2.306 -0.395 -7.386 -5.554 -6.660 0.000 0.000 0.000 0.000 [ MATP 27 ] 37 52 A U - - MP 111 110 6 115 6 2 2 27 45 -9.930 -9.870 -0.012 -8.646 -8.926 -9.321 -4.620 0.173 -4.686 3.238 -5.631 -5.950 -1.359 -4.995 -4.636 1.645 -5.161 -1.060 -1.534 -5.040 -3.198 -0.434 ML 112 110 6 115 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 38 51 C G - - MP 117 116 6 121 6 2 2 25 43 -4.286 -9.870 -0.087 -8.646 -8.926 -9.321 -5.964 -6.079 -5.478 -2.220 0.280 -5.751 3.400 -4.825 -5.535 -2.113 -5.745 -4.177 -0.518 -5.911 1.492 -4.338 ML 118 116 6 121 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 24 43 -3.484 -3.747 -0.356 -5.402 -6.178 -5.839 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 40 50 A U - - MP 123 122 6 127 4 2 2 22 41 -8.540 -8.747 -0.017 -7.162 -6.542 -5.260 -5.710 3.930 -7.957 -9.244 -3.594 -5.609 -6.299 -1.900 -6.925 -2.509 -3.890 -7.891 -5.479 -4.871 ML 124 122 6 127 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 24 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 26 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 41 - U - - - ML 129 128 6 131 3 1 1 19 38 -9.486 -0.007 -8.140 -2.018 -1.443 -1.149 1.553 D 130 128 6 131 3 0 0 20 38 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 42 - A - - - ML 132 131 3 134 3 1 1 18 37 -9.486 -0.007 -8.140 1.646 -2.700 -2.841 -0.795 D 133 131 3 134 3 0 0 18 37 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 43 - A - - - ML 135 134 3 137 3 1 1 17 35 -2.097 -0.391 -8.140 1.356 -3.424 0.297 -3.071 D 136 134 3 137 3 0 0 16 34 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 17 35 -2.792 -0.263 -5.492 0.000 0.000 0.000 0.000 [ MATL 33 ] 45 - U - - - ML 138 137 3 140 3 1 1 15 34 -9.486 -0.007 -8.140 -2.972 -1.380 -3.715 1.771 D 139 137 3 140 3 0 0 16 35 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 46 - G - - - ML 141 140 3 143 3 1 1 14 32 -9.486 -0.747 -1.313 0.817 -3.331 1.003 -2.902 D 142 140 3 143 3 0 0 15 34 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 47 - a - - - ML 144 143 3 146 3 1 1 10 19 -1.038 -0.980 -7.405 0.685 -0.455 -0.480 -0.081 D 145 143 3 146 3 0 0 6 15 -9.710 -1.140 -0.876 IL 146 146 3 146 3 1 1 9 18 -2.998 -0.225 -5.699 0.000 0.000 0.000 0.000 [ MATL 36 ] 49 - A - - - ML 147 146 3 149 2 1 1 1 1 * 0.000 1.520 -2.943 -0.261 -2.576 D 148 146 3 149 2 0 0 0 0 * 0.000 IL 149 149 3 149 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 150 149 3 -1 0 0 0 0 0 // HMMER3/f [i1.1.1 | July 2014] NAME hg18chrX.15503936-15504123.fasta.motif.h1 LENG 49 MAXL 203 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Oct 13 14:14:43 2015 COM [1] cmbuild hg18chrX.15503936-15504123.fasta.motif.h1.1.cm /home/people/seemann/projects/CMfinder/cm/f/chrX/hg18chrX.15503936-15504123/hg18chrX.15503936-15504123.fasta.motif.h1.1 NSEQ 11 EFFN 9.810303 CKSUM 2654204508 STATS LOCAL MSV -7.4378 0.72147 STATS LOCAL VITERBI -8.3882 0.72147 STATS LOCAL FORWARD -3.0382 0.72147 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.11286 1.92737 1.65643 1.09353 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 0.00000 * 1 1.07750 2.85136 3.05429 0.58945 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 2 3.63074 4.72320 0.04589 4.65970 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 3 0.29146 4.63901 1.47447 4.25011 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.13734 4.88280 2.11402 1.46634 0.26236 1.09861 0.40547 4 1.92881 3.30520 0.25577 3.13111 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.01723 4.76269 4.76269 1.46634 0.26236 0.11821 2.19384 5 0.04419 4.92759 3.60580 4.73142 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 6 0.36119 2.39102 1.65955 3.84462 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 7 0.10379 4.37159 2.68586 4.02899 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 8 2.22054 3.23185 3.75646 0.18802 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 9 0.14022 4.02537 2.37962 3.89272 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 10 1.89599 1.85464 3.14510 0.43038 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.13734 4.88280 2.11402 1.46634 0.26236 1.09861 0.40547 11 4.18006 3.93068 4.73280 0.04471 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.01723 4.76269 4.76269 1.46634 0.26236 2.88699 0.05736 12 2.32060 4.15261 0.14664 3.79602 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.01723 4.76269 4.76269 1.46634 0.26236 2.88699 0.05736 13 0.27352 3.71759 1.68515 3.52008 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.22143 4.76269 1.66026 1.46634 0.26236 0.11821 2.19384 14 4.50549 0.04012 4.92367 3.86276 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.01822 4.70726 4.70726 1.46634 0.26236 0.08607 2.49535 15 0.02444 5.03440 4.64540 4.82493 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 16 2.03201 4.50220 0.17230 4.12813 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 17 2.65249 1.96362 1.54730 0.55103 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 18 1.49332 4.15674 0.46880 2.01019 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.45416 1.02878 4.88280 2.35617 0.09958 1.09861 0.40547 19 2.06128 3.37421 0.98342 0.76694 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 20 0.38445 3.67245 1.51787 2.59589 37 A - - < 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 21 4.06559 0.29833 3.94313 1.50776 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.09524 2.48568 4.88280 0.17297 1.83988 1.09861 0.40547 22 0.04584 4.86607 3.58833 4.66092 40 A - - < 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 23 2.86889 2.41581 2.18529 0.29908 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 24 0.23724 3.33264 3.43875 1.94217 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 25 0.44035 3.87260 1.17369 3.64358 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.28610 1.42196 4.88280 0.06166 2.81671 1.09861 0.40547 26 3.52460 2.35462 4.03933 0.15315 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 27 0.81367 3.79898 0.68404 3.51310 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.53847 4.88280 0.89457 1.46634 0.26236 1.09861 0.40547 28 0.90439 1.70319 1.72218 1.45058 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.72214 0.68988 4.36996 0.04970 3.02650 0.77623 0.61644 29 0.32405 3.52289 1.56171 3.28355 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01946 4.64237 4.64237 1.46634 0.26236 0.06623 2.74760 30 4.79143 3.99694 4.66895 0.03672 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 31 2.11276 4.07024 0.17421 3.82098 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 32 3.60276 1.33905 3.44489 0.38750 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.24137 1.57567 4.88280 0.28854 1.38372 1.09861 0.40547 33 0.78123 3.02403 3.18925 0.79330 55 a - - > 1.38629 1.38629 1.38629 1.38629 0.16533 1.93234 4.88280 0.10153 2.33770 1.09861 0.40547 34 2.03522 3.08021 3.95394 0.21788 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 35 0.60131 1.90052 1.53408 2.44459 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 36 4.35937 1.82209 4.33221 0.20778 59 U - - > 1.38629 1.38629 1.38629 1.38629 0.15290 4.88280 2.00839 1.46634 0.26236 1.09861 0.40547 37 0.15117 3.85740 2.35856 3.70417 60 A - - - 1.38629 1.38629 1.38629 1.38629 0.01750 4.74741 4.74741 1.46634 0.26236 2.98138 0.05205 38 1.92503 3.00901 3.45282 0.25731 61 U - - - 1.38629 1.38629 1.38629 1.38629 0.37866 2.36696 1.50752 0.75823 0.63204 0.10697 2.28824 39 1.53463 2.78862 3.11053 0.38804 64 U - - - 1.38629 1.38629 1.38629 1.38629 0.01879 4.67720 4.67720 1.46634 0.26236 3.31531 0.03700 40 3.07164 0.37578 3.74849 1.41326 65 C - - - 1.38629 1.38629 1.38629 1.38629 0.11831 4.67720 2.28008 1.46634 0.26236 3.31531 0.03700 41 0.03897 4.56328 4.19184 4.36820 66 A - - - 1.38629 1.38629 1.38629 1.38629 0.02073 4.57962 4.57962 1.46634 0.26236 0.05477 2.93179 42 1.95945 2.10967 2.27079 0.45483 67 U - - - 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 43 2.67903 1.68673 4.13684 0.31434 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 44 4.03055 1.78404 3.87892 0.23117 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 45 4.93837 4.03152 4.75303 0.03411 70 U - - > 1.38629 1.38629 1.38629 1.38629 0.13734 4.88280 2.11402 1.46634 0.26236 1.09861 0.40547 46 2.38392 0.48123 3.11149 1.40547 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.01723 4.76269 4.76269 1.46634 0.26236 0.11821 2.19384 47 4.42601 3.16679 4.39734 0.06872 72 U - - > 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 48 4.80719 0.09618 4.60943 2.60945 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.01527 4.88280 4.88280 1.46634 0.26236 1.09861 0.40547 49 0.26283 2.39298 2.38418 3.04482 74 A - - : 1.38629 1.38629 1.38629 1.38629 0.00766 4.87520 * 1.46634 0.26236 0.00000 * //