CRS M2544001
+ Summary
+ Consensus structure
100 species tree
Structure as dot-bracket notation:
(((................................((.(((.........................................)))..))......((.(((.(((..............))))))))..................)))
Structure as
forna illustration (bases are named as consensus sequence and colored by relative entropy):
17 species tree
Structure with human sequence and color coding of conservation: [PNG]
+ Alignment
+ Overlap with RNAcentral
CRS M2544001 is not included in RNAcentral.
+ Annotation
Strand | Genomic context | Gene identifier | Distance (0 if overlap) |
Forward | Intergenic | exon|ENSG00000102010|BMX | -14052 |
Reverse | MRNA_Intron | mrna_intron|ENSG00000130234|ACE2 | 0 |
Biotype | Rfam | PhyloCSF |
intronic | NULL | NULL |
Repeat Masker | Tandem Repeats |
NULL | NULL |
CpG island | Exon-Intron Junction |
NULL | 1 |
Common SNP (dbSNP 147) | Flagged SNP (dbSNP 147) |
NULL | NULL |
Disease association from GWAS |
NULL |
+ Evolutionary selection
+ Covarying base pairs
100 species tree
Consensus structure with covarying base pairs (estimated by R-scape with E-value<0.05) highlighted in green (R2R drawing): [PDF]
Number base pairs (bps) | Expected covarying bps | Observed covarying bps | 16 | 1.5 +/- 1.1 | 3 |
Significant covarying base pairs (E-value<0.05)
Left pos | Right pos | Score |
E-value |
Substitutions |
Power |
2 | 147 | 37.28 | 7.0990e-4 | 11 | 0.09 |
3 | 146 | 67.17 | 3.6657e-8 | 22 | 0.23 |
36 | 89 | 27.79 | 1.0554e-2 | 11 | 0.09 |
+ Chromatin signatures
DNase hypersensitive sites (95 cell types from ENCODE) | score | cell types |
| NULL | NULL |
+ Protein binding sites
+ Expression
Poly-A selected RNA (Human Body Map 2.0) | Total RNA (Human ENCODE phase 3) |
Tissue | Expression level (CPM/RLE) | Tissue | Expression level (CPM/RLE) |
Adipose | 0 | Skin of body | 0.106072 |
Colon | 0 | Stomach | 0 |
Heart | 0.483589 | Heart | 7.55823 |
Liver | 0 | Liver | 0.51733 |
Lung | 0 | Lung | 0.353362 |
Ovary | 0 | Uterus | 1.43818 |
Prostate | 0 | Urinary bladder | 0 |
Muscle | 0 | Skeletal muscle | 0 |
Thyroid | 0 | Thyroid gland | 0.223309 |
Brain | 0 | Frontal cortex | 0 |
Lymph | 0 | Temporal lobe | 0 |
Testes | 0 | Cerebellum | 0 |
Blood | 0 | Spinal cord | 0.0830789 |
Kidney | 0 | Diencephalon | 0.349188 |
Breast | 0 | Parietal lobe | 0.0704761 |
Adrenalin | 0 | Occipital | 0.191624 |
| | Metanephros | 0 |
| | Tongue | 0 |
| | Camera type eye | 0.156201 |
+ Transcript boundaries and stability