![[Note!]](../tinynote.gif){kind=small}
| Group | ID | Species Name | Accessions |
|---|---|---|---|
| Bacteriophages | MYCO.SPEC.PH.BXZ1. | Mycobacteriophage bxz1 |
NC_004867
|
| BACI.SPEC.PH.G. | Bacteriophage G of Bacillus |
GSP
| |
| BACT.SPEC.PH.CP1639. | Bacteriophage CP1639 |
AJ304858
| |
| Aquificae | AQUI.AEOL. | Aquifex aeolicus |
AE000657
AE000749
|
| SULF.AZOR. | Sulfurihydrogenibium azorense Az-Ful | GSP | |
| Deinococcus-Thermus | THER.THER. | Thermus thermophilus |
Y15063
|
| UNCU.HUM3. | Uncultured bacterium human3 | AI752555 | |
| DEIN.RADI. | Deinococcus radiodurans |
GSP
| |
| Thermodesulfobacteria | THER.COMM. | Thermodesulfobacterium commune strain DSM 2178 | GSP |
| Thermotogae | THER.NEAP. | Thermotoga neapolitana strain DSM 4359 | GSP |
| THER.MARI. | Thermotoga maritima |
AE001726
AE001727
GSP
| |
| Planctomyctes | GEMM.OBSC. | Gemmata obscuriglobus strain UQM2246 | GSP |
| RHOD.BALT. | Rhodopirellula baltica | BX294141 | |
| Chlamydiae/Verrucomicrobia | CHLA.PSIT. | Chlamydophila psittaci | GSP
|
| CHLA.PNEU. | Chlamydophila pneumoniae |
AE001597
| |
| CHLA.ABOR. | Chlamydophila abortus | GSP
| |
| CHLA.TRAC. | Chlamydia trachomatis |
AE001276
AE001277
| |
| CHLA.MURI. | Chlamydia muridarum |
AE002296
| |
| PARA.UWE2. | Parachlamydia UWE25 (host: Acanthamoeba sp.) | BX908798 | |
| VERR.SPIN. | Verrucomicrobium spinosum DSM4136 | GSP | |
| Chloroflexi | THER.ROSE. | Thermomicrobium roseum strain DSM 5159 | GSP |
| CHLO.AURA. | Chloroflexus aurantiacus |
AY040836 | |
| DEHA.ETHE. | Dehalococcoides ethenogenes strain 195 |
GSP
| |
| Bacteroides/Chlorobi | PORP.GING. | Porphyromonas gingivalis |
GSP
|
| CHLO.TEPI. | Chlorobium tepidum | GSP
| |
| BACT.FORS. | Bacteroides forsythus strain ATCC 43037 |
GSP
| |
| UNCU.ANO1.PA. | Uncultured bacterium anopheles1 | BH400891 | |
| BACT.THET. | Bacteroides thetaiotaomicron |
AE16945
| |
| BACT.FRAG. | Bacteroides fragilis |
GSP
| |
| PREV.INTE. | Prevotella intermedia strain 17 |
GSP
| |
| PREV.RUMI. | Prevotella ruminicola strain 23 |
GSP
| |
| CYTO.HUTC. | Cytophaga hutchinsonii |
GSP
| |
| UNCU.FAR6.PA. | Uncultured bacterium farm6 | AAFX01065096 | |
| SALI.RUBE. | Salinibacter ruber strain DSMZ 13855 | GSP | |
| CHLO.AGGR. | Chlorochromatium aggregatus | GSP | |
| Cyanobacteria | OSCI.SPEC. | Oscillatoria species PCC6304 | AY082651 |
| OSCI.SANC. | Oscillatoria sancta | AY911518 | |
| ANAB.SPEC. | Anabaena sp. PCC7120 | M21659 | |
| ANAB.VARI. | Anabaena variabilis | GSP | |
| CHRO.SPEC. | Chroococcidiopsis species PCC6712 | AY082650 | |
| NOST.PUNC. | Nostoc punctiforme | GSP | |
| FREM.DIPL. | Fremyella diplosiphon | AY082653 | |
| PLEC.BORY. | Plectonema boryanum | AY082652 | |
| TRIC.ERYT. | Trichodesmium erythraeum | GSP | |
| SYNE.SPEC.-1. | Synechocystis sp. PCC6803 | D90916 | |
| SYNE.SPEC.-2. | Synechococcus sp. PCC6301 | AB003477 | |
| CROC.WATS. | Crocosphaera watsonii | GSP | |
| THER.ELON. | Thermosynechococcus elongatus | AP005369 | |
| CYAN.GRAC. | Cyanobium gracile | AF251551 | |
| SYNE.SPEC.-7. | Synechococcus species CC9311 | GSP | |
| SYNE.SPEC.-3. | Synechococcus sp. PCC6307 | AF251551 | |
| SYNE.SPEC.-4. | Synechococcus sp. WH8102 | BX548020 | |
| PROC.MARI.-2. | Prochlorococcus marinus MIT9313 | BX548175 | |
| PROC.MARI.-3. | Prochlorococcus marinus strain SS120 | AE017161 | |
| PROC.MARI.-1. | Prochlorococcus marinus MED4 | BX548174 | |
| SYNE.SPEC.-5. | Synechococcus sp. PCC7009 | AY082654 | |
| SYNE.SPEC.-6. | Synechococcus sp. PCC6904 | AY082655 | |
| GLOE.VIOL. | Gloeobacter violaceus | AP006575 | |
| Organelles/Chloroplasts | CYAN.PARA.CY. | Cyanophora paradoxa cyanelle | U30821 |
| PAVL.LUTH.CL.PA. | Pavlova lutheri chloroplast (partial sequence) | X65961 | |
| BOLI.PACI.CL. | Bolidomonas pacifica chloroplast | AF169626 | |
| GUIL.THET.CL. | Guillardia theta chloroplast | AF041468 | |
| THAL.WEIS.CL. | Thalassiosira weissflogii chloroplast | AF049491 | |
| SKEL.COST.CL. | Skeletonema costatum chloroplast | AF550357 | |
| PYLA.LITT.CL. | Pylaiella littoralis chloroplast | AF169625 | |
| GRAC.TENU.CL. | Gracilaria tenuistipitata var. liui chloroplast | AY673996 | |
| PORP.PURP.CL. | Porphyra purpurea chloroplast | U38804 | |
| CYAN.CALD.CL. | Cyanidium caldarium chloroplast | AF022186 | |
| ODON.SINE.CL. | Odontella sinensis chloroplast | Z67753 | |
| AMPH.COFF.CL. | Amphora coffaeformis chloroplast | AF550350 | |
| THAL.PSEU.CL. | Thalassiosira pseudonana chloroplast | AAFD01001440 | |
| FRAG.PINN.CL. | Fragilaria pinnata chloroplast | AF550351 | |
| EMIL.HUXL.CL. | Emiliania huxleyi chloroplast | GSP | |
| PRYM.PARV.CL. | Prymnesium parvum chloroplast | AF550354 | |
| RHOD.MARI.CL. | Rhodosorus marinus chloroplast | AF550356 | |
| GIGA.PAPI.CL. | Gigartina papillata chloroplast | AF550352 | |
| PRIO.LANC.CL. | Prionitis lanceolata chloroplast | AF550353 | |
| CYAN.MERO.CL. | Cyanidioschyzon merolae chloroplast | AB002583 | |
| RHOD.SALI.CL. | Rhodomonas salina chloroplast | AF550355 | |
| NEPH.OLIV.CL. | Nephroselmis olivacea | AF137379 | |
| MESO.VIRI.CL. | Mesostigma viride chloroplast
|
AF166114 | |
| Organelles/Mitochondria | RECL.AMER.MT.-1. | Reclinomonas americana mitochondrium | AF007261 |
| RECL.AMER.MT.-2. | Reclinomonas americana mitochondrium | tmRNA website | |
| RECL.AMER.MT.-3. | Reclinomonas americana mitochondrium | tmRNA website | |
| SECU.ECUA.MT. | Seculamonas ecuadoriensis mitochondrion | tmRNA website | |
| HIST.AROI.MT. | Histiona aroides mitochondrion | tmRNA website | |
| JAKO.LIBE.MT. | Jakoba libera mitochondrium | tmRNA website | |
| Fibrobacteres/Acidobacteria | UNCU.FAR2. | Uncultured bacterium farm2 | AAFX01031538 |
| ACID.SPEC. | Acidobacterium Ellin6076 | GSP | |
| FIBR.SUCC. | Fibrobacter succinogenes strain S85 | GSP | |
| ACID.CAPS. | Acidobacterium capsulatum strain ATCC 51196 | GSP | |
| Spirochaetes | BORR.GARI. | Borrelia garinii Pbi | CP000013 |
| BORR.BURG. | Borrelia burgdorferi | AE001118 | |
| TREP.DENT. | Treponema denticola | GSP | |
| TREP.PALL. | Treponema pallidum | GSP | |
| LEPT.INTE. | Leptospira interrogans | AE011207 | |
| Nitrospirae | LEPT.GRII. | Leptospirillum species group II | AADL01000021 |
| LEPT.GIII. | Leptospirillum species group III | AADL01000160 | |
| LEPT.FERR.PA. | Leptospirillum ferrooxidans | AY204390 | |
| Alphaproteobacteria | RHOD.PALU. | Rhodopseudomonas palustris | BX571963 |
| MAGN.MAGN.-1. | Magnetospirillum magnetotacticum strain MS-1 | GSP | |
| MAGN.MAGN.-2. | Magnetospirillum magnetotacticum strain MS-1 | GSP | |
| ALPH.SAR1. | Alphaproteobacteria SAR-1 | AACY01003734 | |
| UNCU.WHA3. | Uncultured whale3 | AAFZ01019330 | |
| MAGN.MC-1. | Magnetococcus MC-1 | GSP | |
| RHOD.RUBR. | Rhodospirillum rubrum | GSP | |
| GLUC.OXYD. | Gluconobacter oxydans 621H | CP000009 | |
| METH.EXTO. | Methylobacterium extorquens | tmRNA website | |
| NITR.WINO. | Nitrobacter winogradskyi | GSP | |
| UNCU.FAR1. | Uncultured bacterium farm1 | AAFX01020036 | |
| BRAD.JAPO. | Bradyrhizobium japonicum | M73823 | |
| MESO.LOTI. | Mesorhizobium loti | AP002997 | |
| AGRO.TUME.-1 | Agrobacterium tumefaciens strain C58 | AE008121 | |
| AGRO.TUME.-2. | Agrobacterium tumefaciens NTL4 | tmRNA Website | |
| AGRO.VITI. | Agrobacterium vitis S4 | tmRNA Website | |
| BRUC.MELI. | Brucella melitensis 16M | AE009503 | |
| SINO.MELI. | Sinorhizobium meliloti strain 2011 | M73824 | |
| RHIZ.LEGU. | Rhizobium leguminosarum bv. viciae 3841 | GSP | |
| UNCU.WHA6. | Uncultured bacterium whale6 | AAFZ01025482 | |
| UNCU.WHA5.PA. | Uncultured whale5 | AAFZ01023560 | |
| UNCU.WHA4. | Uncultured bacterium whale4 | AAFZ01020819 | |
| BART.HENS. | Bartonella henselae str. Houston-1 | BX897699 | |
| BART.QUIN. | Bartonella quintana str. Toulouse | BX897700 | |
| NEOR.SENN. | Neorickettsia sennetsu strain Miyayama | GSP | |
| CAUL.CRES. | Caulobacter crescentus | AF255738 | |
| MESO.SPEC. | Mesorhizobium species | GSP | |
| PARA.DENI. | Paracoccus denitrificans strain 1222 | GSP | |
| UNCU.BON2.PA. | Uncultured bacterium bone2 | AAGA01018614 | |
| JANN.SPEC. | Jannaschia sp. CCS1 | GSP | |
| UNCU.WHA2. | Uncultured bacterium whale2 | AAFZ01006233 | |
| SILI.POME. | Silicibacter pomeroyi DSS-3 | CP000031 | |
| RHOD.SPHA. | Rhodobacter sphaeroides | GSP | |
| HYPH.NEPT. | Hyphomonas neptunium strain ATCC 15444 | GSP | |
| SPHI.AROM. | Sphingomonas aromaticivorans | GSP | |
| SPHI.ALAS. | Sphingopyxis alaskensis RB2256 | GSP | |
| ERYT.LITO. | Erythrobacter litoralis HTCC2594 | AAGG01000004 | |
| UNCU.FAR4. | Uncultured bacterium farm4 | AAFX01039956 | |
| UNCU.FAR5. | Uncultured bacterium farm5 | AAFX01005130 | |
| SPHI.ELOD. | Sphingomonas elodea | tmRNA Website | |
| RICK.AKAR. | Rickettsia akari str. Hartford | AAFE01000001 | |
| RICK.RICK. | Rickettsia rickettsii | AADJ01000001 | |
| RICK.CONO.-2.PA. | Rickettsia conorii strain URRCMFEe5 | AY345095 | |
| RICK.CONO.-3.PA. | Rickettsia conorii strain URRCMFEe32 | AY345094 | |
| RICK.PROW. | Rickettsia prowazekii | AJ235273 | |
| RICK.TYPH. | Rickettsia typhi | GSP | |
| RICK.CONO.-1. | Rickettsia conorii strain Malish 7 | AE008661 | |
| ANAP.MARG. | Anaplasma marginale strain St. Maries | tmRNA Website | |
| ANAP.PHAG. | Anaplasma phagocytophila strain HZ | GSP | |
| EHRL.CHAF. | Ehrlichia chaffeensis Arkansas | GSP | |
| EHRL.RUMI. | Ehrlichia ruminantium strain Welgevonden | CR767821 | |
| EHRL.CANI. | Ehrlichia canis | GSP | |
| WOLB.SPEC.-3. | Wolbachia pipientis endosymbiont of Culex quinquefasciatus | GSP | |
| WOLB.SPEC.-1. | Wolbachia pipientis (species wMel) endosymbiont of Drosophila melanogaster | GSP | |
| WOLB.SPEC.-2. | Wolbachia species endosymbiont of Brugia malayi (nematode) | GSP | |
| Betaproteobacteria | DECH.AROM. | Dechloromonas aromatica | CP000089 |
| DECH.AGIT. | Dechloromonas agitata strain CKB | AY911531 | |
| AZOS.ORYZ. | Azospira oryzae strain PS | AY911532 | |
| AZOA.SPEC.-2. | Azoarcus species EbN1 | CR555306 | |
| TREM.PRIN.-1. | Tremblaya princeps 1 | AF481102 | |
| TREM.PRIN.-2. | Tremblaya princeps 2 | tmRNA Website | |
| TREM.PRIN.-3. | Tremblaya princeps 3 | tmRNA Website | |
| TREM.PRIN.-4. | Tremblaya princeps 4 | tmRNA Website | |
| TREM.PRIN.-5. | Tremblaya princeps 5 | tmRNA Website | |
| TREM.PRIN.-6. | Tremblaya princeps 6 | tmRNA Website | |
| AZOA.SPEC.-1. | Azoarcus species BH72 | tmRNA Website | |
| CHRO.VIOL.-1. | Chromobacterium violaceum strain ATCC 07461 | tmRNA website | |
| CHRO.VIOL.-2. | Chromobacterium violaceum strain ATCC12472 | AE016917 | |
| NEIS.GONO. | Neisseria gonorrhoeae | U68080 GSP | |
| NEIS.LACT. | Neisseria lactamica | GSP | |
| NEIS.MENI.-1. | Neisseria meningitidis | AL162755 | |
| NEIS.MENI.-2. | Neisseria meningitidis | AE002098 | |
| NITR.MULT. | Nitrosospira multiformis | GSP | |
| UNCU.FAR7. | Uncultured bacterium farm7 | AAFX01088509 | |
| UNCU.POL1.PA. | Uncultured bacterium pollen1 | CB818296 | |
| UNCU.U02-. | Uncultured U02 | tmRNA website | |
| NITR.EURO. | Nitrosomonas europaea | AL954747 | |
| METH.GLYC. | Methylobacillus glycogenes | tmRNA website | |
| METH.FLAG. | Methylobacillus flagellatus | GSP | |
| NITR.CRYO. | Nitrosomonas cryotolerans | tmRNA website | |
| UNCU.U04-.PA. | Uncultured U04 (partial sequence) | tmRNA website | |
| UNCU.ZEB1.PA. | Uncultured bacterium zebu1 | CB042349 | |
| ALCA.FAEC. | Alcaligenes faecalis | tmRNA website | |
| BORD.AVIU. | Bordetella avium | GSP | |
| UNCU.FAR3. | Uncultured bacterium farm3 | AAFX01035522 | |
| BORD.PARA. | Bordetella parapertussis | GSP | |
| BORD.PERT. | Bordetella pertussis | GSP | |
| BORD.BRON.AM. | Bordetella bronchiseptica (ambiguous residues) | GSP | |
| ALCA.VISC. | Alcaligenes viscolactis strain S-2 | AY911519 | |
| UNCU.ROO1.PA. | Uncultured bacterium root1 | CA305493 | |
| UNCU.HUM2.PA. | Uncultured bacterium human2 | AW835368 | |
| UNCU.STR1. | Uncultured bacterium stronglyoides1 | CZ539665 | |
| UNCU.RIC2. | Uncultured bacterium rice2 | AAAA02043629 | |
| UNCU.AED1. | Uncultured bacterium aedes1 | AAGE01398527 | |
| POLA.SPEC. | Polaromonas species JS666 | AAFQ02000000 | |
| RUBR.GELA. | Rubrivivax gelatinosus strain PM1 | AAEM01000001 | |
| THIO.DENI. | Thiobacillus denitrificans | AAFH01000001 | |
| COMA.TEST. | Comamonas testosteroni | tmRNA website | |
| HYDR.PALL. | Hydrogenophaga palleronii | tmRNA website | |
| VARI.PARA. | Variovorax paradoxus | tmRNA website | |
| BURK.PSEU. | Burkholderia pseudomallei | GSP | |
| BURK.MALL. | Burkholderia mallei strain ATCC 23344 | GSP | |
| BURK.THAI. | Burkholderia thailandensis E264 | GSP | |
| BURK.CENO. | Burkholderia cenocepacia strain J2315 | GSP | |
| BURK.CEPA.-1. | Burkholderia cepacia strain R1808 | GSP | |
| BURK.CEPA.-2. | Burkholderia cepacia strain R18194 | GSP | |
| BURK.FUNG. | Burkholderia fungorum | GSP | |
| ALCA.EUTR. | Alcaligenes eutrophus
|
X51902 | |
| RALS.EUTR. | Ralstonia eutropha
|
CP000090 | |
| RALS.META. | Ralstonia metallidurans
|
GSP | |
| RALS.SOLA. | Ralstonia solanacearum | NC_003295 AL646061 | |
| RALS.PICK. | Ralstonia pickettii | tmRNA website | |
| Gammaproteobacteria | ACID.FERR.-1. | Acidithiobacillus ferroxidans strain ATCC 23270
|
GSP |
| ACID.FERR.-2. | Acidithiobacillus ferroxidans
|
tmRNA website | |
| FRAN.TULA. | Francisella tularensis | GSP | |
| PROT.SAR1.-1. | Proteobacteria SAR-1 | AACY01013710 | |
| DICH.NODO. | Dichelobacter nodosus | U20246 | |
| XYLE.FAST.-1. | Xylella fastidiosa strain 9a5c | AE004078 | |
| XYLE.FAST.-2. | Xylella fastidiosa Dixon Strain | GSP | |
| XYLE.FAST.-3. | Xylella fastidiosa Ann-1 Strain | GSP | |
| XYLE.FAST.-4. | Xylella fastidiosa strain Temecula1 (Temecula1) | AE012561 | |
| STEN.MALT. | Stenotrophomonas maltophilia | GSP | |
| XANT.CAMP. | Xanthomonas campestris | AE012247 | |
| XANT.AXON. | Xanthomonas axonpodis | AE011783 | |
| XANT.ORYZ. | Xanthomonas oryzae pv. oryzae KACC10331 | AE013598 | |
| UNCU.RIC4. | Uncultured bacterium rice4 | AACV01028831 | |
| NITR.OCEA. | Nitrosococcus oceani ATCC 19707 | GSP | |
| UNCU.WHA1. | Uncultured bacterium whale1 | AAFZ01002114 | |
| LEGI.PNEU. | Legionella pneumophila | U68079 | |
| BACT.SAR1.-1.PA. | Bacteria SAR-1 | AACY01111840 | |
| BACT.SAR1.-2.PA. | Bacteria SAR-1 | AACY01029760 | |
| SHEW.SAR2.-2. | Shewanella SAR-2 | AACY01086943 | |
| PROT.SAR1.-3. | Proteobacteria SAR-1 | AACY01081395 | |
| COXI.BURN. | Coxiella burnetii | GSP | |
| METH.CAPS. | Methylococcus capsulatus strain Bath | AE017282 | |
| SHEW.SAR1.-2. | Shewanella SAR-1 | AACY01087071 | |
| UNCU.MAR1. | Uncultured marine gamma proteobacterium EBAC20E09 | AY552545 | |
| UNCU.U01A. | Uncultured U01a | tmRNA website | |
| UNCU.U01B. | Uncultured U01b | tmRNA website | |
| MICR.DEGR. | Microbulbifer degradans | GSP | |
| PSEU.AERU. | Pseudomonas aeruginosa | GSP | |
| AZOT.VINE. | Azotobacter vinelandii | GSP | |
| UNCU.BON1.PA. | Uncultured bacterium bone1 | AAGA01012173 | |
| PSEU.FLUO.-1. | Pseudomonas fluorescens Strain Pf0-1 | GSP | |
| PSEU.FLUO.-2. | Pseudomonas fluorescens SBW25 | GSP | |
| UNCU.HUM1.PA. | Uncultured bacterium human1 | BE092250 | |
| UNCU.CHI1.PA. | Uncultured bacterium chicken1 | CL280628 | |
| PSEU.FLUO.-3. | Pseudomonas fluorescens strain Pf-5 | GSP | |
| PSEU.FLUO.-4. | Pseudomonas fluorescens strain ATCC 17400 | AY911520 | |
| PSEU.CHLO. | Pseudomonas chlororaphis strain 30-84 | AY911521 | |
| PSEU.PUTI.-2. | Pseudomonas putida strain ATCC 12633 (ATCC 12633) | AY911522 | |
| PSEU.PUTI.-1. | Pseudomonas putida | GSP | |
| PSEU.SYRI.-1. | Pseudomonas syringae strain DC3000 | GSP | |
| PSEU.SYRI.-2. | Pseudomonas syringae | GSP | |
| PSEU.SYRI.-3. | Pseudomonas syringae pathovar phaseolicola strain 1448A | GSP | |
| MORA.CATA. | Moraxella catarrhalis | AX067460 | |
| ACIN.ADP1. | Acinetobacter ADP1 | GSP | |
| ACIN.BAUM.PA. | Acinetobacter baumannii | AR319033 | |
| UNCU.CRE1. | Uncultured bacterium c_remanei1 | AAGD01019434 | |
| UNCU.BON3. | Uncultured bacterium bone3 | AAGA01018978 | |
| PSYC.273-. | Psychrobacter 273-4 | GSP | |
| PSYC.URAT. | Psychrobacter urativorans | AY846305 | |
| CHRO.SALE. | Chromohalobacter salexigens strain DSM3043 | GSP | |
| MARI.HYDR. | Marinobacter hydrocarbonoclasticus | U68077 | |
| UNCU.FLA1.PA. | Uncultured bacterium flatworm1 | BU276175 | |
| GAMM.SAR1. | Gammaproteobacteria SAR-1 | AACY01081759 | |
| PROT.SAR1.-2. | Proteobacteria SAR-1 | AACY01117420 | |
| COLW.PSYC. | Colwellia psychrerythraea strain 34H | GSP | |
| PSEU.HALO. | Pseudoalteromonas haloplanktis | U68076 | |
| UNCU.WW11. | Uncultured WW11 | AF389985 | |
| IDIO.LOIH. | Idiomarina loihiensis L2TR | AE017340 | |
| PHOT.PHOS. | Photobacterium phosphoreum | AY040837 | |
| PHOT.PROF. | Photobacterium profundum strain SS9 | CR378665 | |
| SHEW.PUTR.-1. | Shewanella putrefaciens | GSP | |
| SHEW.PUTR.-2. | Shewanella putrefaciens CN-32 | GSP | |
| SHEW.SPEC. | Shewanella species PV-4 | GSP | |
| SHEW.DENI. | Shewanella denitrificans OS-217 | GSP | |
| SHEW.SAR1.-1. | Shewanella SAR-1 | AACY01043347 | |
| SHEW.SAR2.-1. | Shewanella SAR-2 | AACY01092819 | |
| VIBR.FISC. | Vibrio fischeri | GSP | |
| VIBR.CHOL. | Vibrio cholerae | U39068 U02372 GSP | |
| VIBR.PARA. | Vibrio parahaemolyticus RIMD 2210633 | AP005057 | |
| VIBR.VULN. | Vibrio vulnificus | AE016798 AP005333 | |
| AERO.HYDR.-1. | Aeromonas hydrophila strain PPD134/91 | AY442269 | |
| AERO.HYDR.-2. | Aeromonas hydrophila strain ATCC 7966 | GSP | |
| AERO.SALM. | Aeromonas salmonicida | U68075 | |
| UNCU.VLW3. | Uncultured VLW3 | AF389968 | |
| UNCU.VLW4. | Uncultured VLW4 | AF389969 | |
| UNCU.VLS1.-3. | Uncultured VLS11
|
AF389970 | |
| UNCU.RCA3. | Uncultured RCA3 | AF389971 | |
| UNCU.VLS1.-4. | Uncultured VLS13 | AF389973 | |
| UNCU.WW-9. | Uncultured WW9 | AF389974 | |
| UNCU.WW10. | Uncultured WW10 | AF389975 | |
| UNCU.VLW5. | Uncultured VLW5 | AF389976 | |
| UNCU.VLW6. | Uncultured VLW6 | AF389977 | |
| UNCU.RCA4. | Uncultured RCA4
|
AF389978 | |
| UNCU.RCA7. | Uncultured RCA7 | AF389981 | |
| UNCU.RCA8. | Uncultured RCA8 |
AF389982
|
|
| UNCU.LEM1. | Uncultured LEM1 | AF389983 | |
| UNCU.LEM2. | Uncultured LEM2 | AF389984 | |
| WIGG.BREV. | Wigglesworthia brevipalpis | BA000021 | |
| BLOC.FLOR. | Blochmannia floridanus | BX248583 | |
| EWRI.AMYL. | Erwinia amylovora | GSP | |
| MANN.SUCC. | Mannheimia succiniciproducens MBEL55E | AE016827 | |
| HAEM.DUCR.-2. | Haemophilus ducreyi strain NCTC 10945 | AX048594 | |
| HAEM.INFL.-2. | Haemophilus influenzae strain R2866 | AADP01000001 | |
| HAEM.INFL.-3. | Haemophilus influenzae strain R2846 | AADO01000004 | |
| HAEM.INFL.-4. | Haemophilus influenzae strain 86-028NP | CQ872938 | |
| PAST.MULT. | Pasteurella multocida | NC_002663 | |
| MANN.HAEM. | Mannheimia haemolytica | GSP | |
| HAEM.SOMN. | Haemophilus somnus | GSP | |
| HAEM.INFL.-1. | Haemophilus influenzae | U32753 U32808 | |
| HAEM.DUCR.-1. | Haemophilus ducreyi | AE017151 | |
| ACTI.PLEU. | Actinobacillus pleuropneumoniae | GSP | |
| ACTI.ACTI. | Actinobacillus actinomycetemcomitans | GSP | |
| BUCH.APHI.-1. | Buchnera aphicola strain Sg (Schizaphis graminum) | AE014094 | |
| BUCH.APHI.-2. | Buchnera aphicola strain APS | AP001118 | |
| BUCH.APHI.-3. | Buchnera aphidicola strain Bp (Baizongia pistaciae) | AE014016 | |
| PHOT.ASYM. | Photorhabdus asymbiotica | GSP | |
| PHOT.LUMI. | Photorhabdus luminescens | BX571870 | |
| SHIG.FLEX. | Shigella flexneri | GSP | |
| SHIG.DYSE. | Shigella dysenteriae strain M131649 | GSP | |
| ESCH.COLI.-1. | Escherichia coli K12 | D12501 X16382 | |
| ESCH.COLI.-2. | Escherichia coli strain CFT073 | AE014075 | |
| ESCH.COLI.-3. | Escherichia coli O157:H7 strains EDL933 and RIMD050995 | AE005174 BA000007 | |
| ENTE.CLOA. | Enterobacter cloacae | AY491434 | |
| ENTE.AERO. | Enterobacter aerogenes strain ATCC 13048 | AY491435 | |
| PROV.RETT. | Providencia rettgeri | AF440353 | |
| ENTE.SAKA. | Enterobacter sakazakii | tmRNA Website | |
| SERR.MARC.-1. | Serratia marcescens strain BH | tmRNA Website | |
| SERR.MARC.-2. | Serratia marcescens strain Db11 | GSP | |
| PANT.STEW. | Pantoea stewartii strain DC283 | GSP | |
| PROT.VULG. | Proteus vulgaris strain ATCC 13315 | AY846304 | |
| KLEB.AERO. | Klebsiella aerogenes NTCT 9528 | AX048500 | |
| KLEB.PNEU. | Klebsiella pneumoniae | GSP | |
| ERWI.CARO. | Erwinia carotovora subsp. atroseptica | GSP | |
| ERWI.CHRY. | Erwinia chrysanthemi | GSP | |
| SALM.PARA. | Salmonella paratyphi strains A and B | GSP GSP | |
| SALM.BONG. | Salmonella bongori | GSP | |
| SALM.ENTE.-3. | Salmonella enterica subsp. Diarizonae | GSP | |
| SALM.TYPH.-1. | Salmonella typhimurium | GSP | |
| SALM.TYPH.-2. | Salmonella typhi | GSP | |
| SALM.ENTE.-1. | Salmonella enterica serovars Enteritidis and Dublin | GSP | |
| SALM.ENTE.-4. | Salmonella enterica serovar Choleraesuis str. SC-B67 | AE017220 | |
| SALM.ENTE.-2. | Salmonella enterica subsp. Arizonae | AF389960 | |
| CITR.RODE. | Citrobacter rodentium | GSP | |
| UNCU.RCA1. | Uncultured RCA1 | AF389942 | |
| UNCU.VLS1.-1. | Uncultured VLS1
|
AF389943 | |
| UNCU.VLS3. | Uncultured VLS3 | AF389945 | |
| UNCU.VLS4. | Uncultured VLS4 | AF389946 | |
| UNCU.WW-1. | Uncultured WW1 | AF389947 | |
| UNCU.RCA2. | Uncultured RCA2 | AF389948 | |
| UNCU.WW-2. | Uncultured WW2 | AF389949 | |
| UNCU.WW-3. | Uncultured WW3 | AF389950 | |
| UNCU.QL-1. | Uncultured QL1 | AF389951 | |
| UNCU.WW-4. | Uncultured WW4 | AF389952 | |
| UNCU.VLS1.-2.PA. | Uncultured VLS10 (partial sequence) | AF389967 | |
| UNCU.VLS5. | Uncultured VLS5 | AF389953 | |
| UNCU.FS-1. | Uncultured FS1 | AF389954 | |
| UNCU.VLS6. | Uncultured VLS6 | AF389955 | |
| UNCU.FS-2. | Uncultured FS2 | AF389956 | |
| UNCU.WW-5. | Uncultured WW5 | AF389957 | |
| UNCU.WW-6. | Uncultured WW6 | AF389958 | |
| UNCU.VLW1. | Uncultured VLW1 | AF389959 | |
| UNCU.VLS7. | Uncultured VLS7 | AF389961 | |
| UNCU.VLS8. | Uncultured VLS8 | AF389962 | |
| UNCU.VLS9. | Uncultured VLS9 | AF389963 | |
| UNCU.VLW2. | Uncultured VLW2 | AF389966 | |
| UNCU.WW-7. | Uncultured WW7 | AF389964 | |
| UNCU.WW-8. | Uncultured WW8 | AF389965 | |
| YERS.ENTE. | Yersinia entericolitica | GSP | |
| YERS.PEST. | Yersinia pestis | GSP | |
| UNCU.WEE1.PA. | Uncultured bacterium weevil1 | CN612381 | |
| Deltaproteobacteria | LAWS.INTR. | Lawsonia intracellularis | GSP |
| DESU.VULG. | Desulfovibrio vulgaris strain Hildenborough | GSP | |
| DESU.DESU.-2. | Desulfovibrio desulfuricans strain G20 | AABN02000009 GSP | |
| DESU.DESU.-1. | Desulfovibrio desulfuricans | U68081 | |
| DESU.PSYC. | Desulfotalea psychrophila strain LSv54 | CR522870 | |
| UNCU.CION. | Uncultured bacterium ciona1 | AACT01039607 | |
| BDEL.BACT. | Bdellovibrio bacteriovorus HD100 | ACBX842656 | |
| UNCU.FAR8. | Uncultured bacterium farm8 | AAFX01004374 | |
| DESU.ACET. | Desulfuromonas acetoxidans | GSP | |
| GEOB.SULF. | Geobacter sulfurreducens strain PCA | GSP | |
| GEOB.META. | Geobacter metallireducens | GSP | |
| BACT.MARI. | Bacteriovorax marinus | GSP | |
| MYXO.XANT. | Myxococcus xanthus strain DK 1622 | GSP | |
| Epsilonproteobacteria | WOLI.SUCC. | Wolinella succinogenes | BX571661 |
| CAMP.LARI. | Campylobacter lari RM2100 | AAFK01000004 | |
| CAMP.FETU.-2. | Campylobacter fetus strain 23D | AY2112269 | |
| CAMP.FETU.-1. | Campylobacter fetus | AX048586 | |
| CAMP.COLI.-1. | Campylobacter coli strain RM2228 | AAFL01000002 | |
| CAMP.COLI.-2. | Campylobacter coli strain BM2509 | AX048589 | |
| CAMP.JEJU. | Campylobacter jejuni | GSP | |
| HELI.PYLO. | Helicobacter pylori | AE000590 | |
| HELI.HEPA. | Helicobacter hepaticus | AE017149 | |
| HELI.MUST. | Helicobacter mustelae | GSP | |
| Fusobacteria | FUSO.NUCL.-1. | Fusobacterium nucleatum ATCC 25586 | GSP |
| FUSO.NUCL.-2. | Fusobacterium nucleatum | GSP | |
| FUSO.NUCL.-3. | Fusobacterium nucleatum ATCC 49256 | GSP | |
| Dictyoglomi | DICT.THER. | Dictyoglomus thermophilum strain DSM 3960 | GSP |
| Actinomycetes | ACTI.NAES. | Actinomyces naeslundii strain MG1 | GSP |
| UNCU.HOO2. | Uncultured bacterium hookworm2 | BM130131 | |
| BIFI.LONG. | Bifidobacterium longum | AABM00000000
| |
| ARTH.SPEC. | Arthrobacter species strain FB24 | GSP | |
| RUBR.XYLA. | Rubrobacter xylanophilus | GSP | |
| PROP.ACNE.-1. | Propionibacterium acnes strain KPA171202 | AE017283 | |
| PROP.ACNE.-2. | Propionibacterium acnes | CQ363774 | |
| STRE.AURE. | Streptomyces aureofaciens | AY616521 | |
| STRE.COEL. | Streptomyces coelicolor | AL939114 | |
| STRE.AVER. | Streptomyces avermitilis | BA000030 | |
| STRE.COLL. | Streptomyces collinus | AY485228 | |
| CLAV.MICH. | Clavibacter michiganensis | GSP | |
| BREV.LINE. | Brevibacterium linens | GSP | |
| THER.FUSC. | Thermobifida fusca | GSP | |
| TROP.WHIP. | Tropheryma whipplei | GSP | |
| KINE.RADI. | Kineococcus radiotolerans | GSP | |
| FRAN.SPEC.-1. | Frankia sp. CcI3 | GSP | |
| FRAN.SPEC.-2. | Frankia sp. EAN1pec | GSP | |
| LEIF.XYLI. | Leifsonia xyli subsp. xyli strain CTCB07 | AE016822 | |
| GORD.RUBR. | Gordonia rubripertincta | AY911523 | |
| NOCA.FARC. | Nocardia farcinica | AP006618 | |
| NOCA.ASTE.-1. | Nocardia asteroides 1 | AX048666 | |
| NOCA.ASTE.-2. | Nocardia asteroides 2 | AX048665 | |
| RHOD.EQUI. | Rhodococcus equi strain X | AY846303 | |
| MYCO.AVIU.-2. | Mycobacterium avium strain k10 | AE017238 | |
| MYCO.SCRO. | Mycobacterium scrofulaceum | AX048664 | |
| MYCO.INTR. | Mycobacterium intracellulare | AX048662 | |
| MYCO.XENO. | Mycobacterium xenopi | AX048660 | |
| MYCO.FLAV. | Mycobacterium flavescens | AX048652 | |
| MYCO.MALM. | Mycobacterium malmoense | AX048650 | |
| MYCO.SZUL. | Mycobacterium szulgai | AX048648 | |
| MYCO.CHEL. | Mycobacterium chelonae | AX048646 | |
| MYCO.KANS. | Mycobacterium kansasii | AX048644 | |
| MYCO.GORD. | Mycobacterium gordonae | AX048642 | |
| MYCO.MICR.-2. | Mycobacterium microti | AX048656 | |
| MYCO.TUBE.-2. | Mycobacterium tuberculosis strain 210 | GSP | |
| MYCO.MARI.-2. | Mycobacterium marinum | AX048654 | |
| MYCO.LEPR. | Mycobacterium leprae | Z98271 | |
| MYCO.AVIU.-1. | Mycobacterium avium strain 104 | GSP | |
| MYCO.TUBE.-1. | Mycobacterium tuberculosis | X60301 | |
| MYCO.BOVI. | Mycobacterium bovis | GSP | |
| MYCO.MARI.-1. | Mycobacterium marinum | GSP | |
| MYCO.SMEG. | Mycobacterium smegmatis strain MC2 | GSP | |
| CORY.DIPH. | Corynebacterium diphtheriae | GSP | |
| CORY.GLUT. | Corynebacterium glutamicum | BA000036 | |
| CORY.EFFI. | Corynebacterium efficiens | BA000035 | |
| Firmicutes/Bacilli | PAEN.LARV. | Paenibacillus larvae | GSP |
| PAEN.MACE. | Paenibacillus macerans strain NRS277 | AY911524 | |
| BACI.THUR. | Bacillus thuringiensis serovar konkukian strain 97-27 | AE017355 | |
| BACI.MEGA. | Bacillus megaterium | AF019911 | |
| BACI.HALO. | Bacillus halodurans | BA000004 | |
| BACI.CLAU. | Bacillus clausii strain KSM-K16 | AP006627 | |
| BACI.SUBT. | Bacillus subtilis | D25231 | |
| BACI.LICH. | Bacillus licheniformis strain ATCC 14580 | CP000002 | |
| BACI.STEA. | Bacillus stearothermophilus | GSP | |
| GEOB.KAUS. | Geobacillus kaustophilus HTA426 | BA000043 | |
| OCEA.IHEY. | Oceanobacillus iheyensis | BA000028 | |
| EXIG.SPEC. | Exiguobacterium strain 255-15 | GSP | |
| STAP.SAPR. | Staphylococcus saprophyticus | AF375585 | |
| STAP.EPID. | Staphylococcus epidermidis | AF269456 | |
| STAP.AURE.-1. | Staphylococcus aureus strains COL and NCTC8325 | GSP | |
| STAP.AURE.-2. | Staphylococcus aureus strain EMRSA-16 | GSP | |
| STAP.AURE.-3. | Staphylococcus aureus strain MSSA 476 | GSP | |
| STAP.AURE.-4. | Staphylococcus aureus strains Mu50 and N315 | BA000017 BA000018 | |
| STAP.AURE.-5. | Staphylococcus aureus sbsp. aureus MW2 | BA000033 | |
| STAP.XYLO. | Staphylococcus xylosus | AF375587 | |
| BACI.ANTH. | Bacillus anthracis strain Ames and A2012 | GSP GSP | |
| BACI.CERE. | Bacillus cereus strain 10987 | GSP | |
| LIST.INNO.-1. | Listeria innocua | AL596172 | |
| LIST.INNO.-2. | Listeria innocua strain ATCC 12210 (ATCC 12210) | AX048603 | |
| LIST.MONO. | Listeria monocytogenes | AF375584 | |
| LIST.GRAY.-1. | Listeria grayi strain NCTC 10812 | AF440349 | |
| LIST.GRAY.-2. | Listeria grayi strain NCTC 10815 | AF440336 | |
| LIST.IVAN. | Listeria ivanovii | AF440342 | |
| LIST.SEEL. | Listeria seeligeri | AF440350 | |
| LIST.WELS. | Listeria welshimeri | AF440351 | |
| LEUC.MESE. | Leuconostoc mesenteroides
|
AF375571 | |
| LEUC.PSEU. | Leuconostoc pseudomesenteroides | AF375570 | |
| LEUC.LACT. | Leuconostoc lactis | AF375569 | |
| LACT.DELB.-1. | Lactobacillus delbrueckii subsp. lactis strain NCTC 662 | AF440335 | |
| LACT.DELB.-2. | Lactobacillus delbrueckii strain ATCC BAA-365 | GSP | |
| LACT.GASS. | Lactobacillus gasseri | GSP | |
| LACT.JOHN. | Lactobacillus johnsonii | AE017202 | |
| LACT.CASE. | Lactobacillus casei | GSP | |
| LACT.ACID. | Lactobacillus acidophilus strain NCFM | CP000033 | |
| LACT.BREV. | Lactobacillus brevis | AL935259 | |
| LACT.SAKE. | Lactobacillus sakei | AF400065 | |
| LACT.HELV. | Lactobacillus helveticus | AF375575 | |
| LACT.GALL. | Lactobacillus gallinarum | AF375577 | |
| LACT.PLAN.-1. | Lactobacillus plantarum strain CNRZ211 | AF375576 | |
| LACT.PLAN.-3. | Lactobacillus plantarum strain WCSF1 | AL935259 | |
| CARN.PISC.PA. | Carnobacterium piscicola (Partial Sequence) | AF275938 | |
| ENTE.FAEC.-1. | Enterococcus faecalis strain V583 | GSP | |
| ENTE.FAEC.-2. | Enterococcus faecium | AF375581 GSP | |
| ENTE.DURA. | Enterococcus durans | AF375582 | |
| OENO.OENI. | Oenococcus oeni | GSP | |
| LACT.LACT.-1. | Lactococcus lactis subsp. lactis strain NCDO2118
|
AF375552 | |
| LACT.LACT.-2. | Lactococcus lactis subsp. lactis bv. diacetylactis strain IL1403
|
AF375553 | |
| LACT.LACT.-3. | Lactococcus lactis subsp. cremoris strain IL582
|
AF375556 | |
| LACT.LACT.-4. | Lactococcus lactis subsp. lactis strain IL2961
|
AF375554 | |
| LACT.GARV. | Lactococcus garvieae | AF375579 | |
| LACT.PLAN.-2. | Lactococcus plantarum strain CNRZ1322 | AF375567 | |
| PEDI.PENT. | Pediococcus pentosaceus | GSP | |
| LACT.RAFF. | Lactococcus raffinolactis | AF375578 | |
| STRE.AGAL.-1. | Streptococcus agalactiae strain A909 | GSP | |
| STRE.AGAL.-2. | Streptococcus agalactiae strain NEM316 | AL766848 | |
| STRE.SOBR. | Streptococcus sobrinus strain 6715 | GSP | |
| STRE.ZOOE. | Streptococcus zooepidemicus | GSP | |
| STRE.EQUI. | Streptococcus equi | GSP | |
| STRE.UBER. | Streptococcus uberis | GSP | |
| STRE.PYOG. | Streptococcus pyogenes | GSP | |
| STRE.SUIS.-1.PA. | Streptococcus suis (partial sequence) | GSP | |
| STRE.SUIS.-2. | Streptococcus suis strain 89/1591 | AAFA01000032 | |
| STRE.THER.-3. | Streptococcus thermophilus strains CNRZ1066 and LMG 18311 | CP000024 | |
| STRE.THER.-1. | Streptococcus thermophilus strain CNRZ1358 | AF375568 | |
| STRE.THER.-2. | Streptococcus thermophilus strain LMD-9 | GSP | |
| STRE.GORD. | Streptococcus gordonii strain Challis NCTC7868 | GSP | |
| STRE.MITI. | Streptococcus mitis strain NCTC 12261 | GSP | |
| STRE.PNEU. | Streptococcus pneumoniae strain 670 | GSP | |
| STRE.MUTA. | Streptococcus mutans strain UA159 | GSP | |
| Firmicutes/Clostridia | DESU.HAFN. | Desulfitobacterium hafniense | GSP |
| HELI.MOBI. | Heliobacillus mobilis | AY040838 | |
| CLOS.THER. | Clostridium thermocellum | AABG00000000 | |
| THER.TENG. | Thermoanaerobacter tengcongensis | AE013063 | |
| COPR.PROT. | Coprothermobacter proteolyticus strain DSM 9218 | GSP | |
| MOOR.THER. | Moorella thermoacetica | GSP | |
| CLOS.PERF.-1. | Clostridium perfringens strain ATCC13124 | GSP | |
| CLOS.PERF.-2. | Clostridium perfringens strain 13 | BA000016 | |
| CLOS.PERF.-3. | Clostridium perfringens | AX048592 | |
| CLOS.BOTU. | Clostridium botulinum | GSP | |
| CLOS.TETA. | Clostridium tetani | tmRNA Website | |
| CLOS.DIFF. | Clostridium difficile | GSP | |
| CLOS.ACET. | Clostridium acetobutylicum | AE007587 | |
| RUMI.ALBU. | Ruminococcus albus strain 8 | GSP | |
| CARB.HYDR. | Carboxydothermus hydrogenoformans strain Z-2901 | GSP | |
| Firmitutes/Mollicutes | MYCO.MICR.-1. | Mycoplasma mycoides | BX842642 |
| MESO.FLOR. | Mesoplasma florum | AE017263 | |
| MYCO.CAPR. | Mycoplasma capricolum | D13067 | |
| UREA.UREA. | Ureaplasma urealyticum | AE002154 | |
| SPIR.KUNK. | Spiroplasma kunkelii | GSP | |
| MYCO.GENI.-1. | Mycoplasma genitalium | U39714 | |
| MYCO.GENI.-2. | Mycoplasma genitalium | AY911530 | |
| MYCO.MYCO. | Mycoplasma mycoides | BX842642 | |
| MYCO.MOBI. | Mycoplasma mobile | AE017308 | |
| MYCO.PENE. | Mycoplasma penetrans strain HF-2 | BA000026 | |
| MYCO.ARTH. | Mycoplasma arthridis | GSP | |
| UNCU.TOX1.PA. | Uncultured bacterium Toxoplasma2 | AF092791 | |
| UNCU.TOX2.PA. | Uncultured bacterium Toxoplasma1 | AF092786 | |
| UNCU.HUM4.PA. | Uncultured bacterium human4 | AF120328 | |
| UNCU.HUM5.PA. | Uncultured bacterium human5 | CB113832 | |
| UNCU.HUM6.PA. | Uncultured bacterium human6 | BF990150 | |
| MYCO.PNEU. | Mycoplasma pneumoniae | AE000035 | |
| MYCO.HYOP. | Mycoplasma hyopneumoniae strain 232 | AE017332 | |
| MYCO.GALL. | Mycoplasma gallisepticum | AE016968 | |
| MYCO.PULM. | Mycoplasma pulmonis | AL445565 | |
| PHYT.ASTE. | Phytoplasma asteris (Onion yellows phytoplasma OY-M) | AP006628 |