D64126.1/3296-3352             gguaug-uauuuca------accccacga-ua-agccccggaa--cuua-uugug-----uug-------------------------------ugaa-auagaac
AE017333.1/151667-151724       gguaug-uauuucaa------ccccacga-ua-agccccggaa-acuua-uugug-----u-u------------------------------uugaa-auagaac
AE017264.1/139054-139114       gguau--uguuu--cuww--aacc-acga-uu-agccccggaa-ggaaa-ucgu-----guuua----------------------------agauaa-acaauag
BA000028.3/159658-159716       ggcauuuuauuucuaa-----acc-auga-uu-agccccggaa-ucuaa-uuau-----gu-u-------------------------------agaauauaaaua
AE017331.1/2451-2399           gguau--uguuu--------gccccacaa-ua-agccccggaa-gguug-uugug-----uuu---------------------------------aa-acaauaa
AP006716.1/838593-838662       gguau--uguuu-uauauccaccccauga-ua-agccccggaa-acuua-uugug-----u-u---------------------acaa-gauauauaa-gcaaauu
AP008934.1/716592-716659       gguau--uguuuuauauc--accc-acga-ua-agccccggaa-ucuua-uugu-----gua----------------------acac--gauauagaagcacgua
BA000017.4/2360375-2360306     gguau--uguuu-uauauccaccccacga-ua-agccccggaa-acuua-uugug-----u-u---------------------acaa-gauauauaa-gcagaaa
AE016957.1/59564-59510         gguau--uguuug--------ccc-cacaaug-agccccggaa-acuc-aagug----uaugu--------------------------------caa-acaucga
AE017201.1/99492-99543         cgua---uguuug--------ucc-acga-ua-ggccccggaa-acuua-uuguu-----ugu--------------------------------caa-acagaag
AL935254.1/311909-311963       gguau--uguuug--------ccccacga-ua-agccccggaaaucuua-uugag-----ugu--------------------------------caa-acaaaca
CP000033.1/307686-307736       agua---uguuug--------ucc-acga-ua-ggccccggaa-acuua-uugu-----uu-u--------------------------------caa-acugcaa
AE006454.1/9603-9525           gguau--uguuuac-------cccauuuu-uguggccccggaa-accca-aaaau---acuuu-gcagg-acucuuacaccugcu---------guaa-acaaauu
AL766844.1/88806-88887         gguau--uguuuac-------cccauuuguaa-ggccccggaa--ccuuucaaau---acucucgugga-ccggaaca-uccacaccu------guaa-acaaaaa
CP000003.1/1658075-1657991     gguau--uguuuac-------cccauuugaaa-ggccccggaa--ccuuccaaau--accu-ucgaugggacggaacacccaucaccuu-----guaa-acaaaua
AE007342.1/6830-6913           gguau--uguuuac-------cccauuugaaa-ggccccggaa--ccuuccaaau--acuuuucgaugggaaggaacacccaucacc-------guaa-acaaaaa
AE014868.1/4200-4279           gguau--uguuugc-------cccauuugaaa-ggccccggaa-cccuu-caaau---aau-u-uguggaccggaacauccacauu--------guaa-acauaaa
CP000024.1/101380-101466       gguau--uguuuac-------cccauuugaaa-ggccccggaa--ccuuccaaauauacuuuucgaugggaagggacacccaucacuc------guaa-acaaaaa
CP000056.1/1637088-1637004     gguau--uguuuac-------cccauuugaaa-ggccccggaa--ccuuccaaau--accu-ucgaugggauggaacacccaucaccuu-----guaa-acaaaua
SS_cons                        .......<<<<<<<<<<<<.....<<<<<.<<.<<..........>>>>.>>>>>.........<<<<<<<......>>>>>>>.....>>>>>>>>>.>>>....
