pairingmask                ----11111-111111-1111-1111--111111111---------------------------------------------------------------------------------111111111--11111111111111-11111----
AP004030.2/91144-91262     auguGcAUUgCaGGGC-AAcUaCUCCauUGGCAGAgGgauggauugg---------auauggauauggcug---------augcuuccauuugauccca--uccc-------------UaUCUGCCAaaGGAGAuUUGCCCaGcGAUuCacuc
AC111015.2/21804-21909     agcuGcAUUgCuGGGCaAGuU-gUCCuuUGGCAGaUGu------------------ugcaguucaucaucg---------augccug--gggguuacca----ga------------cUA-CUGCCAaaGGAaAuUUGCCCcGgAAUuCaucu
AK108715.1/1199-1094       agcuGcAUUgCuGGGC-AAGUugUCCuuUGGCAGaUGu------------------ugcaguucaucaucg---------augccug--gggguuacca----ga------------cUA-CUGCCAaaGGAaAUUUGCCCcGgAAUuCauuc
AC111015.2/16598-16489     cggcGAAUUaCAGGGC-GGUUuCUCCuuUGGCACGUAcggaggcaag---------gcaugcggugaaa----------aaucucua--------gcua--gcca-------------UGCGUGCCAaaGGAGAAUUGCCCUGcGAUUCacca
AP004030.2/79982-79886     gugaGAAUcaCAGuGC-GAUU-CUCCucUGGCAUGGC-------aug---------agaggccuaaaaaaga-------gacgcacu-------------------------------GCCGUGCCAaaGGAGAAUUGCcCUGccAUUCagaa
AP004030.2/66544-66659     gugaGAAUcaCAGuGC-AGUU-CUCCucUGGCAuGGA---gggcaag---------aggagcugaauagcu--------aauggauga-uaaacugcua--gccu------------uUCCcUGCCAaaGGAGAGCUGCcCUGccAUUCagug
AC111015.2/18487-18585     ccauGCAUUaCUGGGC-AGGU-CUCCcuUGGCAGUGG------ccga---------ucgagcugauca-----------aaccac----gcaaaag----------------------CCACUGCCAaaGGAGACUUGCCCAGcAAUGCagau
AP003142.2/100157-100305   cuguGAAUUaCAGGGC-AGUU-CaCCuuUGGCACaAGggcaagcaguagaaaccaugcgugcuugcuagagcuggaaaugaugcuggu-agcauugcaug-guucagggaucacagauCUcGUGCCAaaGGaGAAUUGCCCUGcGAUUUuguc
AP003142.2/99250-99133     acauGCAUUaCcGGGU-GAGU-CUUCcuUGGCAGUGuuc-gaaucgg---------caguaccggucugcaa-------gugaucgg--ucaaucacca--guuc------------acCGCUGCCAaaGGAGAUUUGCCCaGcAAUGCaacu
AC004481.3/13564-13465     gguuGGAUUaCuGGGC-GAAUaCUCCuaUGGCAGA---------------------ucgcauuggcuagau---------augcaag--uaaaaugcuu--------------------cUCUGCCAaaGGAGAUUUGCCCcGcAAUUCaucc
AC021043.4/36317-36195     aaauGcAUUaCAGGGUaAGAU-CUCUauUGGCAGGaAac-cauuacu---------uagaucuuugcaucucuu-----uaugcauu--gcuuuuaauuagugag------------uUaUCUGCCAaaGGAGAUUUGCCCUGuAAUuCuucu
AC004481.3/13991-14099     gaaaGCAUUaCaGGGC-GAAUcCUCUauUGGCAGuGG---aaguuga---------ugacccuuauauguu---------au---uu--ucucaucauu------u-----------uCCuCUGCCAaaGGAGAUUUGCCUcGcAAUGCuuca
AC004481.3/15484-15601     auauGcAUUaCaGGGCaAGAU-CaCCauUGGCAGAGAuc-uauuacu---------ucauucuu-gcauca--------uaugcaua--aauguuugugg-ugag------------cUCUCUGCCAaaGGaGAUUUGCCCgGuAAUuCucuu
