RNAdbtools version 4

See the http://www.bioinf.au.dk/rnadbtool/ for further info.

This version of the RNAdbtools package has been extended with Perl scripts 
for doing various manipulations and analysis. Two Perl packages are used: 
Formats and Errors. The perl scripts are found in the perl dir with the 
following sub-directories:

- coloring
- formats
- perl_modules
- plotting
- RNA
- sequence

The perl scripts have also been copied to the bin directory. Feel free to 
write your own Perl scripts using the perl modules Formats and errors. You 
can update bin directory on the commandline by writing: 2bin.pl 2bin.bash

The src directory contains the source code for the C++ programs that the
package provides. Write make in this directory to build to the bin dir.

In the bin directory there are some awk scripts:

- al2seqbp
- fasta2col
- gethead
- getseqs
- merge_head2col

To make the ".awk" files 
work, check where your gawk version is located by typing "which gawk". 
Then replace the first line in each .awk file with right path, eg. 
#!/bin/gawk -f


Some of the original RNAdbtools programs cannot be build for Mac: 
gb2col, joincol, extendlist, ct2col, colorpos, blast2col

