#!/usr/bin/env perl   

#  -*- perl -*-

#use strict;
#use warnings FATAL => qw ( all );
use Data::Dumper;

# Ebbe Sloth Andersen, July 2005. Email: esa@mb.au.dk
#
# COL2ALI: Makes converts col-file to ali-file that can be loaded into RnaViz. 
# If col-file contains colors then a annotation line is added to the ali-file. 

# >>>>>>>>>>>>>>>>>> RUN PROGRAM <<<<<<<<<<<<<<<<<<<<

my ( @entries, $file, @print, $line, $header );

( $file ) = @ARGV;

@entries = &read_col ( $file );

#print Dumper ( @entries );
#exit;

&write_ali ( @entries );