pairingmask          111-11111111111-11111---1111------11111111111111111111111222222222222222222------------22222-222222222222233333333333----------4444444--55555555-----------------------------55555555--------------------------------------------------------4---444444-----------------------6666-6666666---------6666666---6666----------7777------------7777-------------8-8888----88888----------------33-333333333
B_HXB2_K03455        GGUcUCUCUGGUUAGaCCAGAucuGAGCcugggaGCUCUCUGGCUAACUAGGGAACCCACUGCUU-AAGCCUCAAuaaa-gcuugccUUGAGuGCUUcAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagacccuuuuagucaguguggaaaAUCUCUAGcaguggcgcccgaacagggaccugaaag------------------cgaaagggaaA---CCAGAGga-gcu-cucucgacgca--ggaCUCGgCUUGCUGaagcgcgcaCGGCAAGaggCGAGggg------cGGCGacug-gugaguaCGCCaaaaauu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
B_JRCSF_M38429       GGUcUCUCUGGUUAGaCCAGAucuGAGCcugggaGCUCUCUGGCUAGCUAGGGAACCCACUGCUU-AAGCCUCAAuaaa-gcuugccUUGAGuGCUUcAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagacccuuuuagucaguguggaaaAUCUCUAGcaguggcgcccgaacagggaccggaaag------------------cgaaagagaaA---CCAGAGga-gau-cucucgacgca--ggaCUCGgCUUGCUGaagcgcgcaCAGCAAGaggCGAGggg------cGGCGacug-gugaguaCGCCgaaa-uu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
B_CAM1_D10112        GGUcUCUCUGGUUAGaCCAGAucuGAGCcugggaGCUCUCUGGCUGACUAGGGAACCCACUGCUU-AAGCCUCAAuaaa-gcuugccUUGAGuGCUUcAAGUAGUGUGUGCCCAUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagacccuuuuagucaguguggaaaAUCUCUAGcaguggcgcccgaacagggacuugaaaa------------------cgaaaguagaA---CCGGAGga-gcu-cucucgacgca--ggaCUCGgCUUGCUGaagcgcgcaCAGCAAGaggCGAGggg------cGGCGacug-gugaguaCGCCauuuauu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
B_MANC_U23487        GGUcUCUCUGGUUAGaCCaGAucuGAGCcugggaGCUCUCaGGCUAGCUAGGGAACCCACUGCUU-AAGCCUCAAuaaa-gcuugccUUGAGuGCUUuAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagacccuuuuagucaguguggaaaAUCUCUAGcaguggcgcccgaacagggaccugaaag------------------cgaaaguagaA---CCAGAGga-gcu-cucucgacgca--ggaCUCGgCUUGCUGaagcgcgcaCGGCAAGaggCGAGgga------cGGCGacug-gugaguaCGCCaaaaauu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
B_WEAU160_U21135     GGUcUCUCUGGUUAGaCCAGAucuGAGCcugggaGCUCUCUGGCUAGCUAGGGAACCCACUGCUU-AAGCCUCAAuaaa-gcuugccUUGAGuGCUUcAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagaccauuuuagucaguguggaaaAUCUCUAGcaguggcgcccgaacagggacccgaaag------------------cgaaagggaaA---CCAGAGga-gcu-cucucgacgca--ggaCUCGgCUUGCUGaagcgcgcaCGGCAAGaggCGAGggg------cGGCGacug-gugaguaCGCCgaaa-uu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
D_ELI_K03454         GGUcUCUCUGGUUAGaCCAGAuuuGAGCcugggaGCUCUCUGGCUAGCUAGGGAACCCACUGCUU-AAGCCUCAAuaaa-gcuugccUUGAGuGCUUcAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagaccccuuuagucagaguggaaaAUCUCUAGcaguggcgcccgaacagggaccugaaag------------------cgaaaguagaA---CCAGAGga-gcu-cucucgacgca--ggaCUCGgCUUGCUGaagcgcgcaCGGCAAGaggCGAGggg------cAGCGacug-gugaguaCGCUaaaauuu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
D_MB2059_AF133821    GGUcUCUCUuGUUAGaCCAGAuuuGAGCcugagaGCUCUCUGGCUAGCuAGGGAACCCACUGCUUaAG-CCUCAAuaaa-gcuugccUUGAGuGaCUcAAGCAGUGUGUGCCCAUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagaccucuuuagucaguguaaaaaAUCUCUAGcaguggcgcccgaacagggacuugaaag------------------cgaaaguagaA---CCAGAGga-gcu-cucucgacgca--ggaCUCGgCUUGCUGaagcgcgcaCAGCAAGaggCGAGggg------cAGCGaacg-gugaguaCGCUaaacaacuuuugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
D_94ZR80_AY118159    GGUcUCUCUAGGUAGaCCAGAucuGAGCccgggaGCUCUCUGGCUAUCUGGGGAACCCACUGCUUA-AGCCUCAAuaaaagcuugccUUGAGuGCUcUAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagacuacuuuugucaguguggaaaAUCUCUAGcaguggcgcccgaacagggacccgaaag------------------cgaaaguaagA---CCAGAGga-gau-cucucgacgca--ggaCUCGgCUUGCUGaagugcacuCGGCAAGaggCGAGgg-------ggGCGacug-gugaguaCGC-aaauuuu--uuaaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
C1_93ZM74_AY118157   GGUcUCUCUAGGUAGaCCAGAucuGAGCcugggaGCUCUCUGGCUAUCUGGGGAACCCACUGCUUA-AGCCUCAAuaaaagcuugccUUGAGuGCUcUAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaacUAGAGAUcccucagacu-cuguugucaguguggaaaAUCUCUAacaguggcgcccgaacagggacuugaaag------------------cgaaaguaagA---CCAGAGga-gau-cucucgacgca--ggaCUCGgCUUGCUGaagugcacuCGGCAAGaggCGAGag-------gGGCGgcug-gugaguaCGCCaaauuuu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
C2_93ZM45_AY118158   GGUcUCUCUGGUUAGaCCAGAuuuGAGCcugggaGCUCUCUGGCUAACUAGGGAACCCACUGCUU-AAGCCUCAAuaaa-gcuugccUUGAGuGCUUcAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagacccuuuuagucaguguggaaaAUCUCUAGcaguggcgcccgaacagggacuugaaag------------------cgaaagggaaA---CCAGAGga-gcu-cccucgacgca--ggaCUCGgCUUGCUGaagcgcgcaCGGCAAGaggCGAGggg------cAGCGaacg-gugaguaCGCUaaaaauu--uugaC-UAGCggugGCUAGaa--------ggagagAG-AUGGGUGCG
C_96BW06J4_AF290028  GGUcUCUCUAgGUAGgCCAGAucuGAGCccgggaGCUCUCUGGCUAUaUGGGGAACCCACUGCUUA-AGCCUCAAuaaa-gcuugccUUGAGuGCUaUAAGUAGUGUGUGCCCAUCUguuauauggagUCUGGUaaCUAGAGAUcccucaggc-ccuuuugguagugaggaaaAUCUCUAGcaguggcgcccgaacagggacuugaaag------------------cgaaaguaagA---CCAGAgga-ggg-cucucgacgca--ggaCUCGgCUUGCUGaagugcacuCGGCAAGaggCGAGggg------cGGCGacug-gugaguaCGCCaaauuuuauuugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
C_93IN101_AB023804   GGUcUCUCUAGGUAGaCCAGAucuGAGCcugggaGCUCUCUGGCUAUCUAGGGAACCCACUGCUUA-AGCCUCAAuaaa-gcuugccUUGAGuGCUcUGAGCAGUGUGUGCCCGUCUauugugug-aCUCUGGUaaCUAGAGAUcccucagac-ccuuuugguaguguggaaaAUCUCUAGcaguggcgcccgaacagggacuugaaag------------------cgaaaguaagA---CCAGAGaa-gauccucuagacgca--ggaCUCGgCUUGCUGaagugcacuCGGCAAGaggCGAGag-------cGGCGacug-gugaguaCGCCaa-uuuuauuugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
F1_94BR77_AY118160   GGUcUCUCUAGUUAGaCCAGAuuuGAGCcugggaGCUCUCUGGCUAGCUAGGGAACCCACUGCUUA-AGCCUCAAuaaa-gcuugccUUGAGuGCUuUAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagaccauucuagucaguguggaaaAUCUCUAGcaguggcgcccgaacagggacuugaa-------------ag-----cgaaaguagaA---CCAGAGaa-gau-cucucgacgca--ggaCUCGgCUUGCUGaagugcacaCGGCAAGaggCGAGag-------cGGCGacug-gugaguaCGCCaaa--uu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
G_93CB76_AY118161    GGUcUCUCUUGCUAGaCCAGAucuGAGCcugggaGCUCUCUGGCUAGCAGGAGAACCCACcGCUU-AAGCCUCAAuaaa-gcuugccUUGAGuGCUUcAAGUaGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagaccacucuagacagugua-aaaAUCUCUAGcaguggcgcccgaacagggacuugaaagugaaaguuaauagggacucgaaagcgaaAguuCCAGAGaa-guu-cucucgacgca--ggaCUCGgCUUGCUGaagugcacaCAGCAAGaggCGAGag-------cGGCGacug-gugaguaCGCCaaaauuu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
G_DRCBL_AF084936     GGUcUCUCUUGUUAGaCCAGAuuuGAGCcugggaGCUCUCUGGCUAGCAGGGGAACCCACUGCUUaGAGCCUCAAuaaa-gcuugccUUGAGuGCUUcAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagaccacucuagauagugua-aaaAUCUCUAGcaguggcgcccgaacagggacuugaaaacgaaaguuaauagggacucgaaagcgaaAguuCCAGAGaa-guu-cucucgacgca--ggaCUCGgCUUGCUGaggugcacaCAGCAAGaggCGAGag-------cGGCGacug-gugaguaCGCCaaaauuu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
AC_93UG66_AY118154   GGUcUCUCUAGGUAGaCCAGAucuGAGCcugggaGCUCUCUGGCUAUCUGGGGAACCCACUGCUUA-AGCCUCAAuaaa-gcuugccUUGAGuGCUcUAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagacaccuuuugucaguguggaaaAUCUCUAGcaguggcgcccgaacagggaccugaaag------------------cgaaaguaagA---CCAGAGaa-g-uucucucgacgca--ggaCUCGgCUUGCUGaggugcacuCGGCAAGaggCGAGag-------cGGCGgcug-gugaguaCGCCaaauuuuauuugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
ADK_MAL_X04415       GGUcUcUCUUGUUAGaCCAGGuc-GAGCccgggaGCUCUCUGGCUAGCAAGG-AACCCACUGCUUaA-GCCUCAAuaaa-gcuugccUUGAGuGCcUcAAGCAGUGUGUGCCCAUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagaccacucuagacggugua-aaaAUCUCUAGcaguggcgcccgaacagggacuuuaaagugaaagu-aacagggacucgaaagcggaAguuCCAGAGaa-guu-cucucgacgca--ggaCUCGgCUUGCUGaggugcacaCAGCAAGaggCGAGag-------cGGCGacug-gugaguaCGCCaau--uu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
AE_97TH87_AY118155   GGUcUCUCUUGUUAGacCAGGuc-GAGCccgggaGCUCCCUGaCUAGCAAGGGAACCCACUGCUUaAAGCCUCAAuaaa-gcuugccUUGAGuGCUUaAAGUGGUGUGUGCCCGUCUguguuagg-aCUCUGGUaaCUAGAGAUcccucagaccacucuagacugagua-aaaAUCUCUAGcaguggcgcccgaacagggacuugaaagcgaaaguuaaaagggacucgaaagcgaaAguuCCAGAGaa-guu-cucucgacgca--ggaCUCGgCUUGCUGaggugcacaCAGCAAGaggCGAGag-------cGGCuacug-gugaguacGCCaaa--uu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
AG_94LB12_AY118156   GGUcUCUCUUGCUAGacCAGAucuGAGCcugggaGCUCUCUGaCUAGCAGGGGAACCCACUGCUU-AAGCCUCAAuaaa-gcuugccUUGAGuGCUUcAAGUAGUGUGUGCCCGUCUguugugug-aCUCUGGUaaCUAGAGAUcccucagaccacucuagacugugua-aaaAUCUCUAGcaguggcgcccgaacagggacuugaa-------guuaauagggacucgaaagcgaaAguuCCAGAGaa-gau-cucucgacgcaa-ggaCUCGgCUUGCUGaagugcacaCAGCAAGaggCGAGag-------cGGCGacug-gugaguaCGCCaaa--uu--uugaC-UAGCggagGCUAGaa--------ggagagAG-AUGGGUGCG
N_YBF106_AJ271370    GGUcUCUCUuGUUAGaCCAGAuuaGAGCcugggaGCUCUCUGGCUAGC-AGGGAACCCACUGCUUa-AGCCUCAAuaaa-gcuugccUUGAGaGCUa-AAGUGGUGUGUGCCCAUCcauucggua-aCUCUGGUacCUAGAGAUcccucagauuaccauagacugagua-aaaAUCUCUAGcasuggcgcccgaacagggacuugaaaa------------------cgaaaguagaA---CCGGAGgcugaaucucucgacgcaa-ggaCUCGgCUCGUUG--gugcacaCAGCGAGaggCGAGg--------cgGCGgaagugugaguaCGCaa----uu--uugaC-UGGCggugGCCAGaaagu----aggagagaGgAUGGGUGCG
O_ANT70_L20587       GGUcUCGGUUAGAGGaCCAGGucuGAGCccgggaGCUCCCUGGCCUCUAGCUGAACCCGCUGCUUa-aCGCUCAAuaaa-gcuugccUUGAG-UG-agAAGCAGUGUGUGCUCAUcUguuca----aCCCUGGUguCUAGAGAUcccucagaucacuuagacugaagcagaaaAUCUCUAGcaguggcgcccgaacagggacuugaag-------------------ugaaagugaaA---CCAGGGaagaaaaccuccgacgcaacgggCUCGgCUUAGCGgagugcaccCGCUAAGaggCGAGaggaacucacAGaGggugaguaauuuUgCUggcgguggccagaCcuaggggaagggcGaagucucuaggggaggAagAUGGGUGCG
