Webserver for Aligning structural RNAs

Results

You can download the results in the following formats: fasta clustal stockholm col 


 
 CMfinder 


 CPU time:
 6.71
 

Average sequence ID:
 0.384274873524
 

Average free energy:
 0.693
 

Average covariation:
 0.174758454106
 

Average basepair probability:
 0.488469268455
 

Canonical basepairs:
 NA
 

Sequence and structure consensus for CMfinder 
cagaahrRRDWHMARRKGCYHUGCUCKMSSWGKUMAYcARCGGAMCYWRAUBWRACUKUCYAWAYARUUWWGGYMCSCKKYRAMYRSCWA
KAGCDGKGCHUMYBRMUGCUCyu

................(((.(.((((((.((((((....(.(...(.((.((.............)).)).)...).)...)))))).))
)))).).))).............


The alignment colored using colorrna.pl of the Vienna package 

Cluster tree of the methods Tree

Table