Webserver for Aligning structural RNAs

Results

You can download the results in the following formats: fasta clustal stockholm col 


 
 CMfinder 


 CPU time:
 4.37
 

Average sequence ID:
 0.424375
 

Average free energy:
 -0.816666666667
 

Average covariation:
 0.180357142857
 

Average basepair probability:
 0.537623531
 

Canonical basepairs:
 NA
 

Sequence and structure consensus for CMfinder 
ggSSYCVYSMYUGKSCWKYKGRRuguSYSRRGKUCYGWWAYACWSUCCGcASWSWGRSUMWSAKDKMWSWCAGUGCAUWACMGRWCUYUK
UCYCDRMWGSYUYMYRGYMRCyg

............((((.((((((...(((((((.(.((....((.(..(..((((.........)).)).)).))....)).).))))))
))))))).))))...........


The alignment colored using colorrna.pl of the Vienna package 

Cluster tree of the methods Tree

Table