Webserver for Aligning structural RNAs

Results

You can download the results in the following formats: fasta clustal stockholm col 


 
 CMfinder 


 CPU time:
 3.38
 

Average sequence ID:
 0.390259329538
 

Average free energy:
 -6.27666666667
 

Average covariation:
 0.228395061728
 

Average basepair probability:
 0.637313185389
 

Canonical basepairs:
 NA
 

Sequence and structure consensus for CMfinder 
rUCWUWYYGKSYUCYWYMYAKWCCYUGUAGRYCCKRAYUUGUGAKRWDUWYYUKURWWRUCcACRRDUYMGRYUCUWGGRRRMURKGURG
UYGVRCWYAWRCAYuyacagcu

........((...((.(.(((..(((..(((..((((((((((....(((....)))...).)))))))))..))).)))..))).).))
....))................


The alignment colored using colorrna.pl of the Vienna package 

Cluster tree of the methods Tree

Table