Webserver for Aligning structural RNAs

Results

You can download the results in the following formats: fasta clustal stockholm col 


 
 CMfinder 


 CPU time:
 5.26
 

Average sequence ID:
 0.33871380989
 

Average free energy:
 -5.74555555556
 

Average covariation:
 0.262345679012
 

Average basepair probability:
 0.522167191557
 

Canonical basepairs:
 NA
 

Sequence and structure consensus for CMfinder 
umaRRRMRCUKCURCCBRMMGYUSGUUUYMCAKGSUGGYWUKBVMccguaURUCURWMYWUKUCWCURUdSYAGYWCCAUKYRAAAYYRR
YRUUGSYVGKGWcAAKVMCWSCcasmgcu

.......((......((((.(((((((((((((((((.(...........(((..............)).).).))))))))))))))))
).))))..))...................


The alignment colored using colorrna.pl of the Vienna package 

Cluster tree of the methods Tree

Table