Webserver for Aligning structural RNAs

Results

You can download the results in the following formats: fasta clustal stockholm col 


 
 CMfinder 


 CPU time:
 26.47
 

Average sequence ID:
 0.773060911481
 

Average free energy:
 -35.2881481481
 

Average covariation:
 -0.0672771672772
 

Average basepair probability:
 0.811831573931
 

Canonical basepairs:
 NA
 

Sequence and structure consensus for CMfinder 
aaGAAGAUCUCAKGCUGUGACCCUCYAGAGGuaaGAAGCRCUUUCUGUUGUuukuCURAAAGAAAASAAMGYGCUUCCYUUUAGAGKGUU
AmCYSUUUGAGAAAAGCAACruuua

.......(((((.((.(((((.(((((((((...((((((((((((....(....(.....))..))))))))))))))))))))).)))
).).)).))))).............


The alignment colored using colorrna.pl of the Vienna package 

Cluster tree of the methods Tree

Table