Webserver for Aligning structural RNAs

Results

You can download the results in the following formats: fasta clustal stockholm col 


 
 CMfinder 


 CPU time:
 22.63
 

Average sequence ID:
 0.297970230041
 

Average free energy:
 0.137647058824
 

Average covariation:
 0.100919117647
 

Average basepair probability:
 0.427218110214
 

Canonical basepairs:
 NA
 

Sequence and structure consensus for CMfinder 
uuwysYyvwagrAWGKGMUCCYMUSYRSUsUCAWrYRYRGARGURCCUcKCUGAkUSWSMWrbragARCAVAARKgMRGURYKUCYWYSU
WKKRSYGGARGURAKKCYWMYYYCYCMMvmmrcacuaaac

..............(.(.((.((.(.(((...((..((((((((((((.((((..((...........)).)))).)))))))))))).)
)..))).).)).)).).)......................


The alignment colored using colorrna.pl of the Vienna package 

Cluster tree of the methods Tree

Table