Webserver for Aligning structural RNAs

Results

You can download the results in the following formats: fasta clustal stockholm col 


 
 CMfinder 


 CPU time:
 2.31
 

Average sequence ID:
 0.277108433735
 

Average free energy:
 14.244
 

Average covariation:
 -0.075
 

Average basepair probability:
 0.282557254397
 

Canonical basepairs:
 NA
 

Sequence and structure consensus for CMfinder 
acSDKWDMYMCSRGGURCRRUYMAGRRGCWKYCARGYYASUUGUCRGAWKUYRYWYWKSRSAUGARYGYSMGYURUYUYRRARCYUUGCC
YGGGUGCCURYMWarcmccagagcc

........(.....(.(((.(.....((..((((.((....(.(..(.........)..).)...)).)).))....)).....).))).
)...)....................


The alignment colored using colorrna.pl of the Vienna package 

Cluster tree of the methods Tree

Table