Webserver for Aligning structural RNAs

Results

You can download the results in the following formats: fasta clustal stockholm col 


 
 CMfinder 


 CPU time:
 9.73
 

Average sequence ID:
 0.335659356309
 

Average free energy:
 10.9075
 

Average covariation:
 0.018584280303
 

Average basepair probability:
 0.26680667424
 

Canonical basepairs:
 NA
 

Sequence and structure consensus for CMfinder 
crcacHMRGMWKWKYWYDYRYCUKYCCWWGUCYYCRGGACWGYKCYCDKDBWMKWRKWCKCAYMYRRSWGKKWGCAYMWWUSGCYRKKUC
HYYdGGMWCWKCGYYBRHUkmcu

.........(.....(.((...(((.(...((...(((...(..((.........))...).))).))...).)))...)).).....).
.......................


The alignment colored using colorrna.pl of the Vienna package 

Cluster tree of the methods Tree

Table