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Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
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hsa-let-7a-1
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hsa-let-7a-3
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hsa-let-7b
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hsa-let-7d
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hsa-let-7f-1
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hsa-let-7f-2
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hsa-let-7g
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hsa-let-7i
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hsa-mir-98
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CONS STRUCTURE
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hsa-let-7a-1
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hsa-let-7a-3
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hsa-let-7b
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hsa-let-7d
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hsa-let-7f-2
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hsa-let-7i
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hsa-mir-98
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CONS STRUCTURE
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Consensus
CPU time:
0.00
Average sequence ID:
0.589958158996
Average free energy:
-32.7511111111
Average covariation:
0.239703065134
Average basepair probability:
0.876388390239
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
MaMAYYCWCBKCMYYSYRGGVUGAGGUAGUAGGUUGUAYAGUUKgURGGGYMRKGAUWUUagRCCCChSWYYAGGAGAUAACUAUACAAY CUACUGYCUUYCCURASGukghug
................(((((.(((((((((((((((((((((....(((.............))).............))))))))))) ))))))))))))))).........
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR
