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Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAforester
RNASampler
T-coffee consensus alignment
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OOD
mir-124-1
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mir-124-2
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mir-124-3
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mir-133a-1
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mir-133a-2
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mir-133b
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mir-215
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mir-216b
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mir-452
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mir-488
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CONS STRUCTURE
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mir-124-1
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mir-124-2
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mir-124-3
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mir-133a-1
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mir-133a-2
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mir-133b
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mir-215
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mir-216b
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mir-452
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mir-488
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CONS STRUCTURE
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Consensus
CPU time:
0.00
Average sequence ID:
0.325605900948
Average free energy:
-6.132
Average covariation:
0.654166666667
Average basepair probability:
0.81246636167
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
CAKMAMWRARRMGCYYYKCUMMRKSUKSUAMARSGRAuMCYWRAwUYKAmMUKUCYRWaAYRAUUHRGKCMCSYKBWWSMAKSYSHAGMW GKSsGMYDKCDUBCGYMYY
..........(..(........((((((..........((((((.((..............)))))))).........))))))...... ..)..).............
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR
