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Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
B
A
D
A
V
G
G
OOD
mir-10a
A
U
C
U
G
U
C
U
G
U
C
U
U
C
U
G
U
A
-
-
U
A
U
A
C
C
C
U
G
U
A
G
A
U
C
C
G
A
A
U
U
U
G
U
G
U
A
A
G
G
A
-
A
U
U
U
U
G
U
G
mir-10b
G
U
U
G
U
A
A
C
G
U
U
G
U
C
U
A
U
A
-
-
U
A
U
A
C
C
C
U
G
U
A
G
A
A
C
C
G
A
A
U
U
U
G
U
G
U
G
G
U
A
U
-
-
C
C
G
U
A
U
A
mir-125b-1
C
A
U
U
G
U
U
G
C
G
C
-
U
C
C
U
C
U
C
-
A
G
U
C
C
C
U
-
G
A
G
A
C
C
C
U
A
A
C
U
U
G
U
G
A
U
G
U
U
U
A
C
C
G
U
U
U
A
A
A
mir-125b-2
U
C
A
-
A
A
C
C
A
G
A
C
U
U
U
U
C
C
-
-
U
A
G
-
U
C
C
C
U
G
A
G
A
C
C
C
U
A
A
C
U
U
G
U
G
A
G
G
U
A
U
U
U
U
A
G
U
A
A
C
mir-145
G
C
U
C
C
-
C
A
C
C
-
U
U
G
U
C
C
U
C
A
C
G
G
U
C
C
A
-
G
U
U
U
U
C
-
C
C
A
G
G
A
A
U
C
C
C
U
U
A
G
A
U
G
C
U
A
A
G
A
U
mir-584
U
G
A
C
U
U
A
G
G
G
U
G
A
C
C
A
G
C
-
-
C
A
U
U
A
U
G
-
G
U
U
U
G
C
C
U
G
G
G
A
C
U
G
A
G
G
A
A
U
U
-
U
G
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U
G
G
G
A
U
CONS STRUCTURE
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mir-10a
G
U
C
A
C
A
A
A
U
U
C
G
U
A
U
C
U
A
G
-
G
G
G
A
A
U
A
U
G
U
A
G
U
U
G
A
C
A
U
-
A
A
A
C
A
C
mir-10b
G
U
C
A
C
A
G
A
U
U
C
G
A
U
U
C
U
A
G
-
G
G
G
A
A
U
A
U
A
U
G
G
U
C
G
A
U
G
C
A
A
A
A
A
C
U
mir-125b-1
U
C
-
C
A
C
G
G
G
U
U
A
G
G
C
U
C
U
U
G
G
G
A
G
C
U
G
C
G
A
G
U
C
-
G
U
G
C
U
U
U
U
G
C
A
U
mir-125b-2
A
U
C
A
C
A
A
G
U
C
A
G
G
C
U
C
U
U
G
-
G
G
A
C
C
U
A
G
G
C
G
G
A
G
G
G
G
A
A
C
C
A
G
C
A
G
mir-145
G
G
G
G
A
U
U
C
C
U
G
G
-
A
A
A
U
A
C
U
G
U
U
C
U
U
G
A
G
G
U
C
A
U
G
G
U
U
U
C
A
C
A
G
C
U
mir-584
A
U
G
U
C
A
G
U
U
C
C
A
G
G
C
C
A
A
C
C
A
G
-
G
C
U
G
G
U
U
G
G
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C
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C
A
A
CONS STRUCTURE
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Consensus
CPU time:
0.00
Average sequence ID:
0.31589023612
Average free energy:
-20.025
Average covariation:
0.779666666667
Average basepair probability:
0.808760439629
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
KYWYKWMSSKYKUCYWYHcaYRKWCCCYGUWKACCYGARUUUKUGURDUDWYGYUKURWWRUSAMARRUYCRGRYCUWSBGGRVMURKGU GGWYGRBMUCAARCMU
.......((((..(((((...........((((((((((((((((.................)))))))))))))))).........))) ))..))))........
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR
