Home
Research
Resources
Publications
About
People
Events
Jobs
News
Contact
Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
B
A
D
A
V
G
G
OOD
mir-130a
-
-
-
-
-
-
U
G
C
U
G
-
-
-
C
U
G
G
C
C
A
G
A
G
C
U
C
U
U
U
U
C
-
-
-
A
C
A
U
U
G
U
G
C
U
-
-
-
A
C
U
G
U
C
U
G
C
A
C
C
mir-184
U
U
-
-
-
-
G
C
C
G
-
G
C
-
C
A
G
U
C
A
C
G
U
C
C
C
C
U
U
A
U
C
A
-
-
C
U
U
U
U
C
C
A
G
C
-
-
C
C
A
G
C
U
U
U
G
U
G
A
C
mir-19b-1
C
U
-
-
-
G
A
A
C
A
C
-
-
-
U
G
U
U
C
U
A
U
G
G
U
U
A
G
U
U
U
U
-
G
C
A
G
G
U
U
U
G
C
A
U
-
-
C
C
A
G
C
U
G
U
G
U
G
A
U
mir-19b-2
A
G
-
-
-
A
C
A
U
U
G
-
-
-
C
U
A
C
U
U
A
C
A
A
U
U
A
G
U
U
U
U
G
C
A
G
G
U
U
U
G
C
A
U
U
U
-
C
A
G
C
G
U
A
U
A
U
A
U
G
mir-29b-1
U
-
C
A
U
A
A
A
G
C
U
-
-
U
C
U
U
C
A
G
G
A
A
G
C
U
G
G
U
U
U
C
A
-
U
-
A
U
G
G
U
G
G
U
U
-
U
A
G
A
U
U
U
A
A
A
U
A
G
U
mir-29b-2
A
-
G
A
U
C
C
U
C
U
U
-
-
C
-
U
U
C
U
G
G
A
A
G
C
U
G
G
U
U
U
C
A
-
-
-
C
A
U
G
G
U
G
G
C
-
-
U
U
A
G
A
U
U
U
U
U
C
C
A
mir-504
U
U
G
A
A
U
C
A
G
C
U
-
-
G
-
-
-
-
C
U
G
U
U
G
G
G
A
G
A
C
C
C
U
-
G
-
G
U
C
U
G
C
A
C
U
-
-
C
U
A
U
C
U
G
U
A
U
U
C
U
mir-551a
G
-
-
-
G
G
G
A
C
U
G
-
-
-
C
C
G
G
G
U
G
A
C
C
C
U
G
G
A
A
A
U
C
-
C
A
G
A
G
U
G
G
G
U
G
G
G
G
C
C
A
G
U
C
U
G
-
A
C
C
mir-599
C
-
-
-
-
A
A
A
G
A
C
A
U
G
C
U
G
U
C
C
A
C
A
G
U
G
U
G
U
U
U
G
A
-
U
A
A
G
C
U
G
A
C
A
U
G
-
G
G
A
C
A
G
G
G
A
U
U
C
U
CONS STRUCTURE
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
(
(
(
(
(
(
(
(
(
(
(
(
(
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
mir-130a
U
G
U
C
A
C
U
A
G
-
C
A
G
U
G
C
A
A
U
G
-
-
U
-
-
-
-
U
A
A
A
A
G
G
G
C
A
U
U
G
G
-
-
C
C
G
U
G
U
A
G
U
G
C
U
A
C
C
C
A
mir-184
U
G
U
A
A
G
U
G
U
-
U
G
G
A
C
G
G
A
G
-
-
A
A
C
-
-
U
G
A
U
A
A
G
G
G
U
A
G
G
U
G
-
-
-
-
A
U
-
U
G
-
A
C
A
C
U
C
A
C
A
mir-19b-1
A
U
U
C
-
-
U
G
C
-
U
G
U
G
C
A
A
A
U
C
C
A
U
G
-
-
C
A
A
A
A
C
U
G
A
C
U
G
U
G
G
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
U
A
G
U
mir-19b-2
U
A
U
A
U
G
U
G
G
-
C
U
G
U
G
C
A
A
A
U
-
C
C
A
U
G
C
A
A
A
A
C
U
G
A
U
U
G
U
G
A
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
U
A
mir-29b-1
G
-
-
-
A
U
U
G
U
C
-
U
A
G
C
A
C
C
A
U
-
-
U
-
-
-
U
G
A
A
A
U
C
A
G
U
G
U
U
C
U
U
G
G
G
G
G
-
A
G
-
A
-
-
-
-
C
C
A
G
mir-29b-2
U
C
U
U
U
G
U
A
U
C
U
A
G
C
A
C
C
A
U
U
-
-
-
-
-
-
U
G
A
A
A
U
C
A
G
U
G
U
U
U
-
U
A
G
G
A
-
-
-
-
-
-
-
-
-
-
G
U
A
A
mir-504
U
A
C
U
G
A
A
G
G
G
-
A
G
U
G
C
A
G
G
G
-
-
C
-
-
-
A
G
G
G
U
U
U
C
C
C
A
-
-
-
-
U
A
C
A
G
-
-
-
-
-
-
-
-
-
-
A
G
G
G
mir-551a
G
U
U
U
C
U
A
G
G
-
C
G
A
C
C
C
A
C
U
C
-
-
U
U
-
-
G
G
U
U
U
C
C
A
G
G
G
-
-
-
-
U
U
G
C
-
-
-
-
-
-
-
-
-
-
-
C
C
U
G
mir-599
U
U
U
C
A
C
U
G
U
-
U
G
U
G
U
C
A
G
U
U
-
-
U
A
U
-
C
A
A
A
C
C
C
A
U
A
C
U
U
G
G
-
-
-
-
A
U
-
-
-
-
-
-
-
G
A
C
A
G
U
CONS STRUCTURE
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
)
)
)
)
)
)
)
)
)
)
)
)
)
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
mir-130a
G
-
-
-
-
-
-
-
C
G
C
U
mir-184
G
-
-
-
-
-
-
-
-
-
C
-
mir-19b-1
G
-
-
A
A
A
A
G
U
C
U
G
mir-19b-2
A
-
-
-
-
-
U
G
U
G
U
G
mir-29b-1
C
-
-
-
-
-
-
U
-
-
-
-
mir-29b-2
G
-
A
-
-
-
A
U
U
G
C
-
mir-504
C
-
A
C
A
G
A
C
U
A
C
C
mir-551a
G
A
A
-
-
-
A
C
C
A
C
A
mir-599
C
-
-
-
-
-
-
-
-
-
-
A
CONS STRUCTURE
.
.
.
.
.
.
.
.
.
.
.
.
Consensus
CPU time:
0.00
Average sequence ID:
0.267653482165
Average free energy:
-8.59555555556
Average covariation:
0.619658119658
Average basepair probability:
0.740080679733
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
HusawRMASYBrysCUKYCYRMASYUVGUUUYAsYASWYUGSVYYkkCCMBSUSURUACYUWUHASUGKsYRGBSCMMUYcmYAugYRAA AYYRGYRKUGGuaSSRugwrgwsmbwCMSRSaamarABYRCR
...................(((((((((((((.......................................................))) ))))))))))................................
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR