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Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
B
A
D
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V
G
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OOD
mir-135a-1
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mir-150
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mir-183
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mir-214
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mir-216a
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mir-592
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CONS STRUCTURE
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mir-135a-1
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mir-150
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mir-183
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mir-214
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mir-216a
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mir-592
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CONS STRUCTURE
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Consensus
CPU time:
0.00
Average sequence ID:
0.336532309661
Average free energy:
-5.68833333333
Average covariation:
0.655208333333
Average basepair probability:
0.825285960646
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
SgRYVWKRYYcSYSMUGUGUCUYWRUSUCWMYWKuVYWAYURUSWGWUGYDMMBKCWCASYCWBAYARYGRYCKSWGRSRYRRMRWCACR RSRGARMMMGKYMCcgWV
......................((((((((.............................................))))))))....... ..................
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR
