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Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
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hsa-mir-19b-1
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hsa-mir-19b-2
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hsa-mir-29b-1
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hsa-mir-29b-2
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hsa-mir-504
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hsa-mir-551a
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hsa-mir-599
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CONS STRUCTURE
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hsa-mir-130a
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hsa-mir-19b-1
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hsa-mir-19b-2
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hsa-mir-29b-1
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hsa-mir-504
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hsa-mir-551a
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hsa-mir-599
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CONS STRUCTURE
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hsa-mir-130a
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C
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hsa-mir-19b-1
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hsa-mir-19b-2
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hsa-mir-29b-1
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hsa-mir-29b-2
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hsa-mir-504
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hsa-mir-551a
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hsa-mir-599
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CONS STRUCTURE
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Consensus
CPU time:
0.00
Average sequence ID:
0.291326209931
Average free energy:
2.675
Average covariation:
-0.316964285714
Average basepair probability:
0.259458675647
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
MUgaADVMACUGyCUKSCYRMAGYURGWUUYRcWRSWYUGCRYYSkRACAGHsURkWKYMHYWWUHRHWKGYAGYGCAMWUcYAUSHRAA AYYRRYDUUSAgwSSGBdGWRuGhdaAcMcASYRCM
..............................................(........................).................. ....................................
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR
