Home
Research
Resources
Publications
About
People
Events
Jobs
News
Contact
Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
B
A
D
A
V
G
G
OOD
hsa-mir-506
-
U
C
A
G
C
C
A
U
A
C
U
A
U
G
U
G
U
A
G
U
G
C
C
U
U
A
U
U
C
A
G
G
A
A
G
G
U
G
U
U
A
C
U
U
A
A
U
A
G
A
U
-
U
A
A
U
A
U
U
hsa-mir-507
-
-
C
C
G
C
U
G
U
G
C
U
G
U
G
U
G
U
A
G
U
G
C
U
U
C
A
C
U
U
C
A
A
G
A
A
G
U
G
C
C
A
U
G
C
A
U
G
U
G
U
C
U
A
G
A
A
A
U
A
hsa-mir-510
-
U
-
-
-
-
G
U
G
U
A
U
G
U
G
U
G
U
G
G
U
G
U
C
C
U
A
C
U
C
A
G
G
A
G
A
G
U
G
G
C
A
A
U
C
A
C
A
U
G
U
A
A
U
U
A
G
G
U
G
hsa-mir-514-1
-
-
U
A
A
A
C
A
U
G
U
U
G
U
C
U
G
U
G
G
U
A
C
C
C
U
A
C
U
C
U
G
G
A
G
A
G
U
G
A
C
A
A
U
C
A
U
G
U
A
U
A
A
U
U
A
A
A
U
U
hsa-mir-514-2
-
-
U
A
A
A
C
A
U
G
U
U
G
U
C
U
G
U
G
G
U
A
C
C
C
U
A
C
U
C
U
G
G
A
G
A
G
U
G
A
C
A
A
U
C
A
U
G
U
A
U
A
A
C
U
A
A
A
U
U
hsa-mir-514-3
-
-
U
A
A
A
C
A
U
G
U
U
G
U
C
U
G
U
G
G
U
A
C
C
C
U
A
C
U
C
U
G
G
A
G
A
G
U
G
A
C
A
A
U
C
A
U
G
U
A
U
A
A
C
U
A
A
A
U
U
hsa-mir-888
-
-
-
-
-
C
C
A
U
G
U
U
G
U
G
G
G
C
A
G
U
G
C
U
C
U
A
C
U
C
A
A
A
A
A
G
C
U
G
U
C
A
G
U
C
A
C
U
U
A
G
A
-
U
U
A
C
A
U
G
hsa-mir-890
-
-
-
-
-
A
C
A
U
G
C
U
G
U
G
G
G
A
A
G
U
G
C
C
C
U
A
C
U
U
G
G
A
A
A
G
G
C
A
U
C
A
G
U
U
G
C
U
U
A
G
A
-
U
U
A
C
A
U
G
hsa-mir-892a
A
U
C
A
G
C
C
A
U
G
C
U
G
U
G
G
G
C
A
G
U
G
C
C
U
U
A
C
U
C
A
G
A
A
A
G
G
U
G
C
C
A
G
U
C
A
C
U
U
A
C
A
C
-
U
A
C
A
U
G
hsa-mir-892b
-
U
C
A
G
C
C
A
U
G
C
U
G
U
G
U
G
C
A
A
U
G
C
C
C
U
A
C
U
C
A
G
A
A
A
G
G
U
G
C
C
A
U
U
U
A
U
G
U
A
G
A
U
-
U
U
U
A
U
G
CONS STRUCTURE
.
.
.
.
.
.
.
.
.
.
.
.
.
(
(
(
(
(
.
.
(
(
(
.
(
(
(
(
(
(
.
(
(
.
(
(
(
.
(
.
(
(
(
(
(
(
(
(
(
.
.
.
.
.
.
.
.
)
)
)
hsa-mir-506
U
G
U
A
A
G
G
C
A
C
C
C
U
U
C
U
G
A
G
U
A
G
A
G
U
A
A
U
G
U
G
C
A
A
C
A
U
G
G
A
C
A
A
-
-
-
-
hsa-mir-507
U
G
U
U
U
U
G
C
A
C
C
U
U
U
U
G
G
A
G
U
G
A
A
A
U
A
A
U
G
C
A
C
A
A
C
A
G
A
U
A
C
A
A
-
-
-
-
hsa-mir-510
U
G
A
U
U
G
A
A
A
C
C
U
C
U
A
A
G
A
G
U
G
G
A
G
U
A
A
C
A
C
A
U
G
A
C
A
U
G
U
A
C
U
A
C
-
A
U
hsa-mir-514-1
U
G
A
U
U
G
A
C
A
C
U
U
C
U
G
U
G
A
G
U
A
G
A
G
U
A
A
C
G
C
A
U
G
A
C
A
C
G
U
A
C
G
A
-
-
-
-
hsa-mir-514-2
U
G
A
U
U
G
A
C
A
C
U
U
C
U
G
U
G
A
G
U
A
G
A
G
U
A
A
C
G
C
A
U
G
A
C
A
C
U
U
A
C
G
A
-
-
-
-
hsa-mir-514-3
U
G
A
U
U
G
A
C
A
C
U
U
C
U
G
U
G
A
G
U
A
G
A
G
U
A
A
C
G
C
A
U
G
A
C
A
C
U
U
A
C
G
A
-
-
-
-
hsa-mir-888
U
G
A
C
U
G
A
C
A
C
C
U
C
U
U
U
G
G
G
U
G
A
A
G
G
A
A
G
G
C
U
C
A
C
C
A
A
G
U
A
C
A
C
U
U
U
U
hsa-mir-890
U
A
A
C
U
A
U
U
C
C
C
U
U
U
C
U
G
A
G
U
A
G
A
G
U
A
A
G
U
C
U
U
A
C
C
A
A
G
U
A
C
A
A
G
U
U
C
hsa-mir-892a
U
C
A
C
U
G
U
G
U
C
C
U
U
U
C
U
G
C
G
U
A
G
A
G
U
A
A
G
G
C
U
C
A
C
U
A
A
G
U
A
C
A
-
-
-
-
-
hsa-mir-892b
U
C
A
C
U
G
G
C
U
C
C
U
U
U
C
U
G
G
G
U
A
G
A
G
C
A
A
G
G
C
U
C
A
C
C
A
U
G
U
A
U
A
U
-
-
-
-
CONS STRUCTURE
)
)
)
)
)
)
.
)
.
)
)
)
.
)
)
.
)
)
)
)
)
)
.
)
)
)
.
.
)
)
)
)
)
.
.
.
.
.
.
.
.
.
.
.
.
.
.
Consensus
CPU time:
0.00
Average sequence ID:
0.6169527897
Average free energy:
-16.81
Average covariation:
0.157567049808
Average basepair probability:
0.743815747342
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
auYARMCAUGYUGUSKGYRGURCCCUACUCAGRARRGUGMCARUCAYKURKAAYUAMAUKUSAYUGRCACCUYUSUGAGURGAGUAASGC WYRMCAMGUACRAbuwy
.............(((((..(((.((((((.((.(((.(.(((((((((........))))))))).).))).)).)))))).)))..)) )))..............
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR
