| ID | Species Name | Sequence |
|---|---|---|
| ACID.CAPS. | Acidobacterium capsulatum strain ATCC 51196 | ANNNLALAA* |
| ACID.FERR.-1. | Acidithiobacillus ferroxidans strain ATCC 23270 | ANDSNYALAA* |
| ACID.FERR.-2. | Acidithiobacillus ferroxidans | ANDSNYALAA* |
| ACID.SPEC. | Acidobacterium Ellin6076 | ANTQFAYAA* |
| ACIN.ADP1. | Acinetobacter ADP1 | ANDETYALAA* |
| ACTI.ACTI. | Actinobacillus actinomycetemcomitans | ANDEQYALAA** |
| ACTI.NAES. | Actinomyces naeslundii strain MG1 | ADNTRTDFALAA* |
| ACTI.PLEU. | Actinobacillus pleuropneumoniae | ANDEQYALAA** |
| AERO.HYDR.-1. | Aeromonas hydrophila strain PPD134/91 | ANDENYALAA** |
| AERO.HYDR.-2. | Aeromonas hydrophila strain ATCC 7966 | ANDENYALAA** |
| AERO.SALM. | Aeromonas salmonicida | ANDENYALAA** |
| AGRO.TUME.-1 | Agrobacterium tumefaciens strain C58 | ANDNNAKEYALAA* |
| AGRO.TUME.-2. | Agrobacterium tumefaciens NTL4 | ANDNNAKECALAA* |
| AGRO.VITI. | Agrobacterium vitis S4 | ANDNNAQGYAVAA* |
| ALCA.EUTR. | Alcaligenes eutrophus | ANDERYALA* |
| ALCA.FAEC. | Alcaligenes faecalis | ANDERFALAA* |
| ALCA.VISC. | Alcaligenes viscolactis strain S-2 | ANDERFALAA* |
| ALPH.SAR1. | Alphaproteobacteria SAR-1 | ANDELALAA* |
| AMPH.COFF.CL. | Amphora coffaeformis chloroplast | ATIITWFISKIINRNACSLQFVV* |
| ANAB.SPEC. | Anabaena sp. PCC7120 | ANNIVKFARKDALVAA* |
| ANAB.VARI. | Anabaena variabilis | ANNIVKFARKDALVAA* |
| ANAP.MARG. | Anaplasma marginale strain St. Maries | ANDDFVAANDNMETAFVAAA* |
| ANAP.PHAG. | Anaplasma phagocytophila strain HZ | ANDDFVAANDNVETAFVAAA* |
| AQUI.AEOL. | Aquifex aeolicus | APEAELALAA* |
| ARTH.SPEC. | Arthrobacter species strain FB24 | AKQTRTDFALAA* |
| AZOA.SPEC.-1. | Azoarcus species BH72 | TNANDERFALAA* |
| AZOA.SPEC.-2. | Azoarcus species EbN1 | ANDERFAVAA* |
| AZOS.ORYZ. | Azospira oryzae strain PS | ANDERFAIAA* |
| AZOT.VINE. | Azotobacter vinelandii | ANDDNYALAA* |
| BACI.ANTH. | Bacillus anthracis strain Ames and A2012 | GKQNNLSLAA* |
| BACI.CERE. | Bacillus cereus strain 10987 | GKQNNLSLAA* |
| BACI.CLAU. | Bacillus clausii strain KSM-K16 | GKENNNFALAA* |
| BACI.HALO. | Bacillus halodurans | GKENNNFALAA* |
| BACI.LICH. | Bacillus licheniformis strain ATCC 14580 | GKSNQNLALAA* |
| BACI.MEGA. | Bacillus megaterium | GKSNNNFALAA*** |
| BACI.SPEC.PH.G. | Bacteriophage G of Bacillus | AKLNITNNELQVA* |
| BACI.STEA. | Bacillus stearothermophilus | GKQNYALAA* |
| BACI.SUBT. | Bacillus subtilis | GKTNSFNQNVALAA** |
| BACI.THUR. | Bacillus thuringiensis serovar konkukian strain 97-27 | GKQNNLSLAA* |
| BACT.FORS. | Bacteroides forsythus strain ATCC 43037 | GENNYALAA* |
| BACT.FRAG. | Bacteroides fragilis | GETNYALAA* |
| BACT.MARI. | Bacteriovorax marinus | AESNFAPAMAA* |
| BACT.SAR1.-2.PA. | Bacteria SAR-1 | ADNGQMAFA* |
| BACT.SPEC.PH.CP1639. | Bacteriophage CP1639 | ANDENYALAA** |
| BACT.THET. | Bacteroides thetaiotaomicron | GETNYALAA* |
| BART.HENS. | Bartonella henselae str. Houston-1 | ANDNYAEARLAA* |
| BART.QUIN. | Bartonella quintana str. Toulouse | ANDNYAEARLAA* |
| BDEL.BACT. | Bdellovibrio bacteriovorus HD100 | GNDYALAA* |
| BIFI.LONG. | Bifidobacterium longum | AKSNRTEFALAA* |
| BLOC.FLOR. | Blochmannia floridanus | AKNKYNEPVALAA* |
| BOLI.PACI.CL. | Bolidomonas pacifica chloroplast | ANNILAFNRKSLSFA* |
| BORD.AVIU. | Bordetella avium | ANDERFALAA* |
| BORD.BRON.AM. | Bordetella bronchiseptica (ambiguous residues) | ANDERXALAA* |
| BORD.PARA. | Bordetella parapertussis | ANDERFALAA* |
| BORD.PERT. | Bordetella pertussis | ANDERLALAA* |
| BORR.BURG. | Borrelia burgdorferi | AKNNNFTSSNLVMAA* |
| BORR.GARI. | Borrelia garinii Pbi | AKNNNFTSSNLVMAA* |
| BRAD.JAPO. | Bradyrhizobium japonicum | ANDNFAPVAQAA* |
| BREV.LINE. | Brevibacterium linens | AKSNNRTDFALAA* |
| BRUC.MELI. | Brucella melitensis 16M | ANDNNAQGYALAA* |
| BUCH.APHI.-1. | Buchnera aphicola strain Sg (Schizaphis graminum) | ANNKQNYALAA* |
| BUCH.APHI.-2. | Buchnera aphicola strain APS | ANNKQNYALAA* |
| BUCH.APHI.-3. | Buchnera aphidicola strain Bp (Baizongia pistaciae) | AKQNQYALAA** |
| BURK.CENO. | Burkholderia cenocepacia strain J2315 | ANDDTFALAA* |
| BURK.CEPA.-1. | Burkholderia cepacia strain R1808 | ANDDTFALAA* |
| BURK.CEPA.-2. | Burkholderia cepacia strain R18194 | ANDDTFALAA* |
| BURK.FUNG. | Burkholderia fungorum | ANDDTFALAA* |
| BURK.MALL. | Burkholderia mallei strain ATCC 23344 | ANDDTFALAA* |
| BURK.PSEU. | Burkholderia pseudomallei | ANDDTFALAA* |
| BURK.THAI. | Burkholderia thailandensis E264 | ANDDTFALAA* |
| CAMP.COLI.-1. | Campylobacter coli strain RM2228 | ANNVKFAPAYAKAA* |
| CAMP.COLI.-2. | Campylobacter coli strain BM2509 | APAYAKAA* |
| CAMP.FETU.-1. | Campylobacter fetus | APAYAKAA* |
| CAMP.FETU.-2. | Campylobacter fetus strain 23D | ANNVKFAPAYAKAA* |
| CAMP.JEJU. | Campylobacter jejuni | ANNVKFAPAYAKAA* |
| CAMP.LARI. | Campylobacter lari RM2100 | ANNVKFAPAYAKAA* |
| CARB.HYDR. | Carboxydothermus hydrogenoformans strain Z-2901 | ANENYALAA** |
| CAUL.CRES. | Caulobacter crescentus | ANDNFAEEFAVAA* |
| CHLA.ABOR. | Chlamydophila abortus | AEPKAKCEIISFSELSEQRLAA* |
| CHLA.MURI. | Chlamydia muridarum | AEPKAECEIISFADLNDLRVAA* |
| CHLA.PNEU. | Chlamydophila pneumoniae | AEPKAECEIISLFDSVEERLAA* |
| CHLA.PSIT. | Chlamydophila psittaci | AEPKAECEIISFSDLTEERLAA* |
| CHLA.TRAC. | Chlamydia trachomatis | AEPKAECEIISFADLEDLRVAA* |
| CHLO.AGGR. | Chlorochromatium aggregatus | ADDYSYAMAA* |
| CHLO.AURA. | Chloroflexus aurantiacus | ANTNTRAQARLALAA*** |
| CHLO.TEPI. | Chlorobium tepidum | ADDYSYAMAA* |
| CHRO.SALE. | Chromohalobacter salexigens strain DSM3043 | ANDDNYAQGALAA* |
| CHRO.SPEC. | Chroococcidiopsis species PCC6712 | ANNIVKFERQAVFA* |
| CHRO.VIOL.-1. | Chromobacterium violaceum strain ATCC 07461 | ANDETYALAA* |
| CHRO.VIOL.-2. | Chromobacterium violaceum strain ATCC12472 | ANDETYALAA* |
| CITR.RODE. | Citrobacter rodentium | ANDENYALAA** |
| CLAV.MICH. | Clavibacter michiganensis | ANNKQSSFVLAA* |
| CLOS.ACET. | Clostridium acetobutylicum | ALKIKDNENNLALAA* |
| CLOS.BOTU. | Clostridium botulinum | ANDNFALAA** |
| CLOS.DIFF. | Clostridium difficile | ADDNFAIAA* |
| CLOS.PERF.-1. | Clostridium perfringens strain ATCC13124 | AEDNFALAA* |
| CLOS.PERF.-2. | Clostridium perfringens strain 13 | AEDNFALAA* |
| CLOS.PERF.-3. | Clostridium perfringens | ARDNFALAA* |
| CLOS.TETA. | Clostridium tetani | ADDNFVLAA* |
| CLOS.THER. | Clostridium thermocellum | ANEDNYALAAA* |
| COLW.PSYC. | Colwellia psychrerythraea strain 34H | ANDDTFALAA* |
| COMA.TEST. | Comamonas testosteroni | ANDERFALAA* |
| COPR.PROT. | Coprothermobacter proteolyticus strain DSM 9218 | AEPEFALAA* |
| CORY.DIPH. | Corynebacterium diphtheriae | AENTQRDYALAA* |
| CORY.EFFI. | Corynebacterium efficiens | AEKTQRDYALAA* |
| CORY.GLUT. | Corynebacterium glutamicum | AEKSQRDYALAA* |
| COXI.BURN. | Coxiella burnetii | ANDSNYLQEAYA* |
| CROC.WATS. | Crocosphaera watsonii | ANNIVSFKRVAVAA* |
| CYAN.CALD.CL. | Cyanidium caldarium chloroplast | ANNIIEISNIRKPALVV* |
| CYAN.GRAC. | Cyanobium gracile | ANNIVRFSRQAAPVAA* |
| CYAN.MERO.CL. | Cyanidioschyzon merolae chloroplast | LFKFKDNLKTI* |
| CYAN.PARA.CY. | Cyanophora paradoxa cyanelle | ATNIVRFNRKAAFAV** |
| CYTO.HUTC. | Cytophaga hutchinsonii | GEESYAMAA* |
| DECH.AGIT. | Dechloromonas agitata strain CKB | ANDEQFAIAA* |
| DECH.AROM. | Dechloromonas aromatica | ANDEQFAIAA* |
| DEHA.ETHE. | Dehalococcoides ethenogenes strain 195 | ANVNSFLLAK* |
| DEIN.RADI. | Deinococcus radiodurans | GNQNYALAA* |
| DESU.ACET. | Desulfuromonas acetoxidans | ADTDVSYALAA* |
| DESU.DESU.-1. | Desulfovibrio desulfuricans | ANNDYDYAYAA** |
| DESU.DESU.-2. | Desulfovibrio desulfuricans strain G20 | ANNDYEYAMAA* |
| DESU.HAFN. | Desulfitobacterium hafniense | ANDDNYALAA* |
| DESU.PSYC. | Desulfotalea psychrophila strain LSv54 | ADDYNYAVAA** |
| DESU.VULG. | Desulfovibrio vulgaris strain Hildenborough | ANNYDYALAA* |
| DICH.NODO. | Dichelobacter nodosus | ANDDNYALAA* |
| DICT.THER. | Dictyoglomus thermophilum strain DSM 3960 | ANTNLALAA* |
| EHRL.CANI. | Ehrlichia canis | ANDNFVFANDNNSSVAGLVAA* |
| EHRL.CHAF. | Ehrlichia chaffeensis Arkansas | ANDNFVFANDNNSSANLVAA* |
| EHRL.RUMI. | Ehrlichia ruminantium strain Welgevonden | ANDNFVSANDNNSTANLVAA* |
| EMIL.HUXL.CL. | Emiliania huxleyi chloroplast | ANNILNFNSKLAIA* |
| ENTE.AERO. | Enterobacter aerogenes strain ATCC 13048 | ANDENYALAA** |
| ENTE.CLOA. | Enterobacter cloacae | ANDENYALAA** |
| ENTE.DURA. | Enterococcus durans | AKNENNSYALAA* |
| ENTE.FAEC.-1. | Enterococcus faecalis strain V583 | AKNENNSFALAA* |
| ENTE.FAEC.-2. | Enterococcus faecium | AKNENNSYALAA* |
| ENTE.SAKA. | Enterobacter sakazakii | ANDENYALAA** |
| ERWI.CARO. | Erwinia carotovora subsp. atroseptica | ANDENYALAA** |
| ERWI.CHRY. | Erwinia chrysanthemi | ANDENFAPAALAA* |
| ERYT.LITO. | Erythrobacter litoralis HTCC2594 | ANDNEALALAA* |
| ESCH.COLI.-1. | Escherichia coli K12 | ANDENYALAA** |
| ESCH.COLI.-2. | Escherichia coli strain CFT073 | ANDENYALAA** |
| ESCH.COLI.-3. | Escherichia coli O157:H7 strains EDL933 and RIMD050995 | ANDENYALAA** |
| EWRI.AMYL. | Erwinia amylovora | ANDENFAPAALAA* |
| EXIG.SPEC. | Exiguobacterium strain 255-15 | GKTNTQLAAA** |
| FIBR.SUCC. | Fibrobacter succinogenes strain S85 | ADENYALAA* |
| FRAG.PINN.CL. | Fragilaria pinnata chloroplast | ANNIIPFHFKTVNFNNSNLLQFAA* |
| FRAN.SPEC.-1. | Frankia sp. CcI3 | ANKTQPTTPTYALAA* |
| FRAN.SPEC.-2. | Frankia sp. EAN1pec | ATKTQPASSTFALAA* |
| FRAN.TULA. | Francisella tularensis | ANDSNFAAVAKAA* |
| FREM.DIPL. | Fremyella diplosiphon | ANNIVKFARKEALVAA** |
| FUSO.NUCL.-1. | Fusobacterium nucleatum ATCC 25586 | GNKDYALAA* |
| FUSO.NUCL.-2. | Fusobacterium nucleatum | GNKEYALAA* |
| FUSO.NUCL.-3. | Fusobacterium nucleatum ATCC 49256 | GNKEYALAA* |
| GAMM.SAR1. | Gammaproteobacteria SAR-1 | ANNYNYSLAA* |
| GEMM.OBSC. | Gemmata obscuriglobus strain UQM2246 | AEPQYSLAA* |
| GEOB.KAUS. | Geobacillus kaustophilus HTA426 | GKQNYALAA* |
| GEOB.META. | Geobacter metallireducens | ADNYDYAVAA* |
| GEOB.SULF. | Geobacter sulfurreducens strain PCA | ADNYDYAVAA** |
| GIGA.PAPI.CL. | Gigartina papillata chloroplast | AKHQIVPFSKRIIVV* |
| GLOE.VIOL. | Gloeobacter violaceus | ATNNVVPFARARATVAA* |
| GLUC.OXYD. | Gluconobacter oxydans 621H | ANDNSEVLAVAA* |
| GORD.RUBR. | Gordonia rubripertincta | ADSNQRDYALAA* |
| GRAC.TENU.CL. | Gracilaria tenuistipitata var. liui chloroplast | AKNNILTLSRRLIYA* |
| GUIL.THET.CL. | Guillardia theta chloroplast | ASNIVSFSSKRLVSFA* |
| HAEM.DUCR.-1. | Haemophilus ducreyi | ANDEQYALAA** |
| HAEM.DUCR.-2. | Haemophilus ducreyi strain NCTC 10945 | ANDEQYALAA** |
| HAEM.INFL.-1. | Haemophilus influenzae | ANDEQYALAA** |
| HAEM.INFL.-2. | Haemophilus influenzae strain R2866 | ANDEQYALAA** |
| HAEM.INFL.-3. | Haemophilus influenzae strain R2846 | ANDEQYALAA** |
| HAEM.INFL.-4. | Haemophilus influenzae strain 86-028NP | ANDEQYALAA** |
| HAEM.SOMN. | Haemophilus somnus | ANDEQYALAA** |
| HELI.HEPA. | Helicobacter hepaticus | ANNANYAPAYAKVA* |
| HELI.MOBI. | Heliobacillus mobilis | AEDNYALAA* |
| HELI.MUST. | Helicobacter mustelae | ANNKNYAPAYAKVA* |
| HELI.PYLO. | Helicobacter pylori | VNNTDYAPAYAKAA* |
| HYDR.PALL. | Hydrogenophaga palleronii | ANDERFALAA* |
| HYPH.NEPT. | Hyphomonas neptunium strain ATCC 15444 | ANDNFAEGELLAA* |
| IDIO.LOIH. | Idiomarina loihiensis L2TR | ANDDNYALAA** |
| JANN.SPEC. | Jannaschia sp. CCS1 | ANDNRAPAMALAA* |
| KINE.RADI. | Kineococcus radiotolerans | ADSKRTEFALAA* |
| KLEB.AERO. | Klebsiella aerogenes NTCT 9528 | ANDENYALAA** |
| KLEB.PNEU. | Klebsiella pneumoniae | ANDENYALAA** |
| LACT.ACID. | Lactobacillus acidophilus strain NCFM | ANNKNSYALAA* |
| LACT.BREV. | Lactobacillus brevis | AKNNNNSYALAA** |
| LACT.CASE. | Lactobacillus casei | AKNENSYALAA** |
| LACT.DELB.-1. | Lactobacillus delbrueckii subsp. lactis strain NCTC 662 | AKNENNSYALAA* |
| LACT.DELB.-2. | Lactobacillus delbrueckii strain ATCC BAA-365 | ANENSYAVAA* |
| LACT.GALL. | Lactobacillus gallinarum | ANNKNSYALAA* |
| LACT.GARV. | Lactococcus garvieae | AKNNTSYALAA* |
| LACT.GASS. | Lactobacillus gasseri | ANNENSYAVAA* |
| LACT.HELV. | Lactobacillus helveticus | ANNKNSYALAA* |
| LACT.JOHN. | Lactobacillus johnsonii | ANNENSYAVAA* |
| LACT.LACT.-1. | Lactococcus lactis subsp. lactis strain NCDO2118 | AKNNTQTYAMAA* |
| LACT.LACT.-2. | Lactococcus lactis subsp. lactis bv. diacetylactis strain IL1403 | AKNNTQTYAMAA* |
| LACT.LACT.-3. | Lactococcus lactis subsp. cremoris strain IL582 | AKNNTQTYAMAA* |
| LACT.LACT.-4. | Lactococcus lactis subsp. lactis strain IL2961 | AKNNTQTYAMAA* |
| LACT.PLAN.-1. | Lactobacillus plantarum strain CNRZ211 | AKNNNNSYALAA** |
| LACT.PLAN.-2. | Lactococcus plantarum strain CNRZ1322 | AKNTQTYALAA* |
| LACT.PLAN.-3. | Lactobacillus plantarum strain WCSF1 | AKNNNNSYALAA** |
| LACT.RAFF. | Lactococcus raffinolactis | AKNTQTYAVAA* |
| LACT.SAKE. | Lactobacillus sakei | ANNNNSYAVAA* |
| LAWS.INTR. | Lawsonia intracellularis | ANNNYDYALAA* |
| LEGI.PNEU. | Legionella pneumophila | ANDENFAGGEAIAA** |
| LEIF.XYLI. | Leifsonia xyli subsp. xyli strain CTCB07 | ANSKSTVSAKADFALAA* |
| LEPT.FERR.PA. | Leptospirillum ferrooxidans | ANNEMALAA* |
| LEPT.GIII. | Leptospirillum species group III | ANEELALAA* |
| LEPT.GRII. | Leptospirillum species group II | ANEELALAA* |
| LEPT.INTE. | Leptospira interrogans | ANNELALAA* |
| LEUC.LACT. | Leuconostoc lactis | AKNENSFAIAA* |
| LEUC.MESE. | Leuconostoc mesenteroides | AKNENSFAIAA* |
| LEUC.PSEU. | Leuconostoc pseudomesenteroides | AKNENSYAIAA* |
| LIST.GRAY.-1. | Listeria grayi strain NCTC 10812 | GKEKQNLAFAA** |
| LIST.GRAY.-2. | Listeria grayi strain NCTC 10815 | GKQNNNLAFAA** |
| LIST.INNO.-1. | Listeria innocua | GKEKQNLAFAA** |
| LIST.INNO.-2. | Listeria innocua strain ATCC 12210 (ATCC 12210) | GKEKQNLAFAA** |
| LIST.IVAN. | Listeria ivanovii | GKEKQNLAFAA** |
| LIST.MONO. | Listeria monocytogenes | GKEKQNLAFAA** |
| LIST.SEEL. | Listeria seeligeri | GKEKQNLAFAA** |
| LIST.WELS. | Listeria welshimeri | GKEKQNLAFAA** |
| MAGN.MAGN.-1. | Magnetospirillum magnetotacticum strain MS-1 | ANDNFAPVAVAA* |
| MAGN.MAGN.-2. | Magnetospirillum magnetotacticum strain MS-1 | ANDNVELAAAA* |
| MAGN.MC-1. | Magnetococcus MC-1 | ANDEHYAPAFAAA* |
| MANN.HAEM. | Mannheimia haemolytica | ANDEQYALAA** |
| MANN.SUCC. | Mannheimia succiniciproducens MBEL55E | ANDEQYALAA** |
| MARI.HYDR. | Marinobacter hydrocarbonoclasticus | ANDENYALAA* |
| MESO.FLOR. | Mesoplasma florum | ANKNEENTNEVPTFMLNAGQANYAFA* |
| MESO.LOTI. | Mesorhizobium loti | ANDNYAEARLAA* |
| MESO.SPEC. | Mesorhizobium species | ANDNYAEARLAA* |
| MESO.VIRI.CL. | Mesostigma viride chloroplast | ANNILPFNRKTAVAV* |
| METH.CAPS. | Methylococcus capsulatus strain Bath | ANDDVYALAA* |
| METH.EXTO. | Methylobacterium extorquens | ANDNFAPVAVAA* |
| METH.FLAG. | Methylobacillus flagellatus | ANDETYALAA* |
| METH.GLYC. | Methylobacillus glycogenes | ANDETYALAA* |
| MICR.DEGR. | Microbulbifer degradans | ANDDNYGAQLAA* |
| MOOR.THER. | Moorella thermoacetica | ADDNLALAA* |
| MORA.CATA. | Moraxella catarrhalis | ANDETYALAA* |
| MYCO.ARTH. | Mycoplasma arthridis | GNLETSEDKKLDLQFVMNSQTQQNLLFA* |
| MYCO.AVIU.-1. | Mycobacterium avium strain 104 | ADSHQRDYALAA* |
| MYCO.AVIU.-2. | Mycobacterium avium strain k10 | ADSHQRDYALAA* |
| MYCO.BOVI. | Mycobacterium bovis | ADSHQRDYALAA* |
| MYCO.CAPR. | Mycoplasma capricolum | ANKNEETFEMPAFMMNNASAGANFMFA** |
| MYCO.CHEL. | Mycobacterium chelonae | ADSHQRDYALAA* |
| MYCO.FLAV. | Mycobacterium flavescens | ADSNQRDYALAA* |
| MYCO.GALL. | Mycoplasma gallisepticum | DKTSKELADENFVLNQLASNNYALNF* |
| MYCO.GENI.-1. | Mycoplasma genitalium | DKENNEVLVEPNLIINQQASVNFAFA* |
| MYCO.GENI.-2. | Mycoplasma genitalium | DKENNEVLVDPNLIINQQASVNFAFA* |
| MYCO.GORD. | Mycobacterium gordonae | ADSHQRDYALAA* |
| MYCO.HYOP. | Mycoplasma hyopneumoniae strain 232 | AKNSKKSPNEAKIDYPFLSYNQLNFAYV* |
| MYCO.INTR. | Mycobacterium intracellulare | ADSHQRDYALAA* |
| MYCO.KANS. | Mycobacterium kansasii | ADSHQRDYALAA* |
| MYCO.LEPR. | Mycobacterium leprae | ADSYQRDYALAA* |
| MYCO.MALM. | Mycobacterium malmoense | AVSTQRDYALAA* |
| MYCO.MARI.-1. | Mycobacterium marinum | ADSHQRDYALAA* |
| MYCO.MARI.-2. | Mycobacterium marinum | ADSHQRDYALAA* |
| MYCO.MICR.-1. | Mycoplasma mycoides | ADSHQRDYALAA* |
| MYCO.MICR.-2. | Mycobacterium microti | ADSHQRDYALAA* |
| MYCO.MOBI. | Mycoplasma mobile | GKEKQLEVSPLLMSSSQSNLVFA* |
| MYCO.MYCO. | Mycoplasma mycoides | ADKNEENFEMPAFMINNASAGANYMFA** |
| MYCO.PENE. | Mycoplasma penetrans strain HF-2 | AKNNKNEAVEVELNDFEINALSQNANLALYA* |
| MYCO.PNEU. | Mycoplasma pneumoniae | DKNNDEVLVDPMLIANQQASINYAFA* |
| MYCO.PULM. | Mycoplasma pulmonis | EQKNKKMTIKI** |
| MYCO.SCRO. | Mycobacterium scrofulaceum | ADSHQRDYALAA* |
| MYCO.SMEG. | Mycobacterium smegmatis strain MC2 | ADSNQRDYALAA* |
| MYCO.SPEC.PH.BXZ1. | Mycobacteriophage bxz1 | ATDTDATVTDAEIEAFFAEEAAALV* |
| MYCO.SZUL. | Mycobacterium szulgai | AENTQRDFALAA* |
| MYCO.TUBE.-1. | Mycobacterium tuberculosis | ADSHQRLAA* |
| MYCO.TUBE.-2. | Mycobacterium tuberculosis strain 210 | ADSHQRDYALAA* |
| MYCO.XENO. | Mycobacterium xenopi | ADSHQRDYALAA* |
| MYXO.XANT. | Myxococcus xanthus strain DK 1622 | ANDNVELALAA* |
| NEIS.GONO. | Neisseria gonorrhoeae | ANDETYALAA* |
| NEIS.LACT. | Neisseria lactamica | ANDETYALAA* |
| NEIS.MENI.-1. | Neisseria meningitidis | ANDETYALAA* |
| NEIS.MENI.-2. | Neisseria meningitidis | ANDETYALAA* |
| NEOR.SENN. | Neorickettsia sennetsu strain Miyayama | ANDNFEAGSAEYAVAA* |
| NEPH.OLIV.CL. | Nephroselmis olivacea | ANQILPFSRRVAVAA* |
| NITR.CRYO. | Nitrosomonas cryotolerans | ANDENYALAA* |
| NITR.EURO. | Nitrosomonas europaea | ANDENYALAA* |
| NITR.MULT. | Nitrosospira multiformis | ANDENYALAA* |
| NITR.OCEA. | Nitrosococcus oceani ATCC 19707 | ANDDNYALAA* |
| NITR.WINO. | Nitrobacter winogradskyi | ANDNYAPVAQAA* |
| NOCA.ASTE.-1. | Nocardia asteroides 1 | ADSNQRDYALAA* |
| NOCA.ASTE.-2. | Nocardia asteroides 2 | ADSNQRDYALAA* |
| NOCA.FARC. | Nocardia farcinica | ADSHQREYALAA* |
| NOST.PUNC. | Nostoc punctiforme | ANNIVNFARKDALVAA* |
| OCEA.IHEY. | Oceanobacillus iheyensis | GKETNQPVLAAA* |
| ODON.SINE.CL. | Odontella sinensis chloroplast | ANNLISSVFKSLSTKQNSLNLSFAV* |
| OENO.OENI. | Oenococcus oeni | AKNNEPSYALAA* |
| OSCI.SANC. | Oscillatoria sancta | ANNIVPFARKQVAVA* |
| OSCI.SPEC. | Oscillatoria species PCC6304 | ANNIVPFARKAAPVAA* |
| PAEN.LARV. | Paenibacillus larvae | GKQQNNYALAA** |
| PAEN.MACE. | Paenibacillus macerans strain NRS277 | GKQQNNFALAA** |
| PANT.STEW. | Pantoea stewartii strain DC283 | ANDENYALAA** |
| PARA.DENI. | Paracoccus denitrificans strain 1222 | ANDNRAPVALAA* |
| PARA.UWE2. | Parachlamydia UWE25 (host: Acanthamoeba sp.) | ANNSNKIAKVDFQEGTFARAA* |
| PAST.MULT. | Pasteurella multocida | ANDEQYALAA** |
| PAVL.LUTH.CL.PA. | Pavlova lutheri chloroplast (partial sequence) | ANNILSFNRVAVAPYSYIALTPYGQKI* |
| PEDI.PENT. | Pediococcus pentosaceus | AKNNNNSYALAA*** |
| PHOT.ASYM. | Photorhabdus asymbiotica | ANDNEYALVA** |
| PHOT.LUMI. | Photorhabdus luminescens | ANDEKYALAA** |
| PHOT.PHOS. | Photobacterium phosphoreum | ANDENYALAA* |
| PHOT.PROF. | Photobacterium profundum strain SS9 | ANDENFALAA** |
| PHYT.ASTE. | Phytoplasma asteris (Onion yellows phytoplasma OY-M) | GNNKQTVTNTQDFAGQTPVYQMNFANSFSSQLAFA* |
| PLEC.BORY. | Plectonema boryanum | ANNIVPFARKTAPVAA* |
| POLA.SPEC. | Polaromonas species JS666 | ANDERFALAA** |
| PORP.GING. | Porphyromonas gingivalis | GENNYALAA* |
| PORP.PURP.CL. | Porphyra purpurea chloroplast | AENNIIAFSRKLAVA* |
| PREV.INTE. | Prevotella intermedia strain 17 | GENNYALAA* |
| PREV.RUMI. | Prevotella ruminicola strain 23 | GNNEYALAA* |
| PREV.RUMI. | Prevotella ruminicola strain 23 | GESNYAMAA |
| PRIO.LANC.CL. | Prionitis lanceolata chloroplast | AKHQILPLSRKIALA* |
| PROC.MARI.-1. | Prochlorococcus marinus MED4 | ANKIVSFSRQTAPVAA* |
| PROC.MARI.-2. | Prochlorococcus marinus MIT9313 | ANNIVRFSRQPALVAA* |
| PROC.MARI.-3. | Prochlorococcus marinus strain SS120 | ANKIVSFSRQTAPVAA* |
| PROP.ACNE.-1. | Propionibacterium acnes strain KPA171202 | AENTRTDFALAA* |
| PROP.ACNE.-2. | Propionibacterium acnes | AENTRTDFALAA* |
| PROT.SAR1.-1. | Proteobacteria SAR-1 | GENADYALAA* |
| PROT.SAR1.-2. | Proteobacteria SAR-1 | ANNYNYSLAA* |
| PROT.SAR1.-3. | Proteobacteria SAR-1 | ADNGYMAAA* |
| PROT.VULG. | Proteus vulgaris strain ATCC 13315 | ANDNQYEALAA** |
| PROV.RETT. | Providencia rettgeri | ANDENYALAA** |
| PRYM.PARV.CL. | Prymnesium parvum chloroplast | ANNILSFNTKLALA* |
| PSEU.AERU. | Pseudomonas aeruginosa | ANDDNYALAA* |
| PSEU.CHLO. | Pseudomonas chlororaphis strain 30-84 | ANDETYGEYALAA* |
| PSEU.FLUO.-1. | Pseudomonas fluorescens Strain Pf0-1 | ANDDQYGAALAA* |
| PSEU.FLUO.-2. | Pseudomonas fluorescens SBW25 | ANDENYGQEFALAA* |
| PSEU.FLUO.-3. | Pseudomonas fluorescens strain Pf-5 | ANDETYGDYALAA* |
| PSEU.FLUO.-4. | Pseudomonas fluorescens strain ATCC 17400 | ANDETYGEYALAA* |
| PSEU.HALO. | Pseudoalteromonas haloplanktis | ANDDNYSLAA* |
| PSEU.PUTI.-1. | Pseudomonas putida | ANDENYGAEYKLAA* |
| PSEU.PUTI.-2. | Pseudomonas putida strain ATCC 12633 (ATCC 12633) | ANDETYGEETYALAA* |
| PSEU.SYRI.-1. | Pseudomonas syringae strain DC3000 | ANDENYGAQLAA* |
| PSEU.SYRI.-2. | Pseudomonas syringae | ANDETYGEYALAA* |
| PSEU.SYRI.-3. | Pseudomonas syringae pathovar phaseolicola strain 1448A | ANDENYGAQLAA* |
| PSYC.273-. | Psychrobacter 273-4 | ANDENYALAA* |
| PSYC.URAT. | Psychrobacter urativorans | ANDENYALAA* |
| PYLA.LITT.CL. | Pylaiella littoralis chloroplast | ANNIMSFNKNQVFA* |
| RALS.EUTR. | Ralstonia eutropha | ANDERYALAA* |
| RALS.META. | Ralstonia metallidurans | ANDERYALAA* |
| RALS.PICK. | Ralstonia pickettii | ANDERYALAA* |
| RALS.SOLA. | Ralstonia solanacearum | ANDNRYQLAA* |
| RHIZ.LEGU. | Rhizobium leguminosarum bv. viciae 3841 | ANDNYAEARLAA* |
| RHOD.BALT. | Rhodopirellula baltica | AEENFALAA* |
| RHOD.EQUI. | Rhodococcus equi strain X | AESTQREYALAA* |
| RHOD.MARI.CL. | Rhodosorus marinus chloroplast | ANNILKFFTKSPVVAFA* |
| RHOD.PALU. | Rhodopseudomonas palustris | ANDNYAPVAQAA* |
| RHOD.RUBR. | Rhodospirillum rubrum | ANDNVELAAAA* |
| RHOD.SALI.CL. | Rhodomonas salina chloroplast | ANNIVPFSRKVALV* |
| RHOD.SPHA. | Rhodobacter sphaeroides | ANDNRAPVALAA* |
| RICK.AKAR. | Rickettsia akari str. Hartford | ANDNNRSVDLALAA* |
| RICK.CONO.-1. | Rickettsia conorii strain Malish 7 | ANDNNRSVGHLALAA* |
| RICK.PROW. | Rickettsia prowazekii | ANDNRYVGVPALAAA* |
| RICK.RICK. | Rickettsia rickettsii | ANDNNRSVGRLALAA* |
| RICK.TYPH. | Rickettsia typhi | ANDNKRYVGVAALAAA* |
| RUBR.GELA. | Rubrivivax gelatinosus strain PM1 | ANDERFALAA* |
| RUBR.XYLA. | Rubrobacter xylanophilus | ANDREMALAA* |
| RUMI.ALBU. | Ruminococcus albus strain 8 | AYVLKLGGHGYFAKAS* |
| SALI.RUBE. | Salinibacter ruber strain DSMZ 13855 | ADDYSYAMAA* |
| SALM.BONG. | Salmonella bongori | ANDENYALAA** |
| SALM.ENTE.-1. | Salmonella enterica serovars Enteritidis and Dublin | ANDETYALAA** |
| SALM.ENTE.-2. | Salmonella enterica subsp. Arizonae | ANDENYALAA** |
| SALM.ENTE.-3. | Salmonella enterica subsp. Diarizonae | ANDETYALAA** |
| SALM.ENTE.-4. | Salmonella enterica serovar Choleraesuis str. SC-B67 | ANDENYALAA** |
| SALM.PARA. | Salmonella paratyphi strains A and B | ANDENYALAA** |
| SALM.TYPH.-1. | Salmonella typhimurium | ANDETYALAA** |
| SALM.TYPH.-2. | Salmonella typhi | ANDETYALAA** |
| SERR.MARC.-1. | Serratia marcescens strain BH | ANDENYALAA* |
| SERR.MARC.-2. | Serratia marcescens strain Db11 | ANDENYALAA* |
| SHEW.DENI. | Shewanella denitrificans OS-217 | ANDSNYSLAA* |
| SHEW.PUTR.-1. | Shewanella putrefaciens | ANDDNYALAA* |
| SHEW.PUTR.-2. | Shewanella putrefaciens CN-32 | ANDDNYALAA* |
| SHEW.SAR1.-1. | Shewanella SAR-1 | ANDDNYALAA* |
| SHEW.SAR1.-2. | Shewanella SAR-1 | ANNDNYALAA* |
| SHEW.SAR2.-1. | Shewanella SAR-2 | ANDDNYALAA* |
| SHEW.SAR2.-2. | Shewanella SAR-2 | ADYGYMAAA* |
| SHEW.SPEC. | Shewanella species PV-4 | ANDDNYALAA* |
| SHIG.DYSE. | Shigella dysenteriae strain M131649 | ANDENYALAA** |
| SHIG.FLEX. | Shigella flexneri | ANDENYALAA** |
| SILI.POME. | Silicibacter pomeroyi DSS-3 | ANDNRAPVALAA* |
| SINO.MELI. | Sinorhizobium meliloti strain 2011 | ANDNYAEARLAA* |
| SKEL.COST.CL. | Skeletonema costatum chloroplast | ANNIMSFIFKTVTPKNHLNVLSFAV* |
| SPHI.ALAS. | Sphingopyxis alaskensis RB2256 | ANDNEALALAA* |
| SPHI.AROM. | Sphingomonas aromaticivorans | ANDNEALALAA* |
| SPHI.ELOD. | Sphingomonas elodea | ANDNEALAIAA* |
| SPIR.KUNK. | Spiroplasma kunkelii | ASKKQKEDKIEMPAFMMNNQLAVSMLAA* |
| STAP.AURE.-1. | Staphylococcus aureus strains COL and NCTC8325 | GKSNNNFAVAA* |
| STAP.AURE.-2. | Staphylococcus aureus strain EMRSA-16 | GKSNNNFAVAA* |
| STAP.AURE.-3. | Staphylococcus aureus strain MSSA 476 | GKSNNNFAVAA* |
| STAP.AURE.-4. | Staphylococcus aureus strains Mu50 and N315 | GKSNNNFAVAA* |
| STAP.AURE.-5. | Staphylococcus aureus sbsp. aureus MW2 | GKSNNNFAVAA* |
| STAP.EPID. | Staphylococcus epidermidis | DKSNNNFAVAA** |
| STAP.SAPR. | Staphylococcus saprophyticus | GKENNNFAVAA** |
| STAP.XYLO. | Staphylococcus xylosus | GKENNNFAVAA** |
| STEN.MALT. | Stenotrophomonas maltophilia | ANDDNYALAA* |
| STRE.AGAL.-1. | Streptococcus agalactiae strain A909 | AKNTNSYALAA* |
| STRE.AGAL.-2. | Streptococcus agalactiae strain NEM316 | AKNTNSYALAA* |
| STRE.AURE. | Streptomyces aureofaciens | ANSKRDSQQFALAA** |
| STRE.AVER. | Streptomyces avermitilis | ANTKSDSQSFALAA** |
| STRE.COEL. | Streptomyces coelicolor | ANTKRDSSQQAFALAA* |
| STRE.COLL. | Streptomyces collinus | ANTKRDSSSFALAA* |
| STRE.EQUI. | Streptococcus equi | AKNNTTYALAA* |
| STRE.GORD. | Streptococcus gordonii strain Challis NCTC7868 | AKNNTSYALAA* |
| STRE.MITI. | Streptococcus mitis strain NCTC 12261 | AKNNTSYALAA* |
| STRE.MUTA. | Streptococcus mutans strain UA159 | AKNTNSYAVAA* |
| STRE.PNEU. | Streptococcus pneumoniae strain 670 | AKNNTSYALAA* |
| STRE.PYOG. | Streptococcus pyogenes | AKNTNSYALAA* |
| STRE.SOBR. | Streptococcus sobrinus strain 6715 | AKNTNSYAVAA* |
| STRE.SUIS.-1.PA. | Streptococcus suis (partial sequence) | AKNTNTYALAA** |
| STRE.SUIS.-2. | Streptococcus suis strain 89/1591 | AKNTNTYALAA** |
| STRE.THER.-1. | Streptococcus thermophilus strain CNRZ1358 | AKNTNSYAVAA* |
| STRE.THER.-2. | Streptococcus thermophilus strain LMD-9 | AKNTNSYAVAA* |
| STRE.THER.-3. | Streptococcus thermophilus strains CNRZ1066 and LMG 18311 | AKNTNSYAVAA* |
| STRE.UBER. | Streptococcus uberis | AKNTNSYALAA* |
| STRE.ZOOE. | Streptococcus zooepidemicus | AKNNTTYALAA* |
| SULF.AZOR. | Sulfurihydrogenibium azorense Az-Ful | IPEREIALAA* |
| SYNE.SPEC.-1. | Synechocystis sp. PCC6803 | ANNIVSFKRVAIAA* |
| SYNE.SPEC.-2. | Synechococcus sp. PCC6301 | ANNIVPFARKAAPVAA* |
| SYNE.SPEC.-3. | Synechococcus sp. PCC6307 | ANNIVRFSRQAAPVAA* |
| SYNE.SPEC.-4. | Synechococcus sp. WH8102 | ANNIVRFSRHAAPVAA* |
| SYNE.SPEC.-5. | Synechococcus sp. PCC7009 | ANNIVRFSRQAAPVAA* |
| SYNE.SPEC.-6. | Synechococcus sp. PCC6904 | ANNIVRFSRQAAPVAA* |
| SYNE.SPEC.-7. | Synechococcus species CC9311 | ANNIVRFSRQAAPVAA* |
| THAL.PSEU.CL. | Thalassiosira pseudonana chloroplast | ANNIMPFMFNVVKTNRSLTTLNFAV* |
| THAL.WEIS.CL. | Thalassiosira weissflogii chloroplast | ANNIIPFIFKAVKTKKEAMALNFAV* |
| THER.COMM. | Thermodesulfobacterium commune strain DSM 2178 | ANEYAYALAA* |
| THER.ELON. | Thermosynechococcus elongatus | ANNIVPFARKAAAVA* |
| THER.FUSC. | Thermobifida fusca | ANSKRTEFALAA* |
| THER.MARI. | Thermotoga maritima | ANEPVAVAA** |
| THER.NEAP. | Thermotoga neapolitana strain DSM 4359 | ANEPVAVAA** |
| THER.ROSE. | Thermomicrobium roseum strain DSM 5159 | GERELALAA* |
| THER.TENG. | Thermoanaerobacter tengcongensis | ADRELAYAA* |
| THER.THER. | Thermus thermophilus | ANTNYALAA** |
| THIO.DENI. | Thiobacillus denitrificans | ANDENYALAA* |
| TREM.PRIN.-1. | Tremblaya princeps 1 | APSNRFTIVANDCIDALVRRAVV* |
| TREM.PRIN.-2. | Tremblaya princeps 2 | APSNRFTMVANDRTFALVGRAAV* |
| TREM.PRIN.-3. | Tremblaya princeps 3 | APRNRFTMVANDSMFALAGRAAV* |
| TREM.PRIN.-4. | Tremblaya princeps 4 | ATSNRFAMVANDCQFALVGRAAV* |
| TREM.PRIN.-5. | Tremblaya princeps 5 | APRNRFTRVTNDSKFALVGRAAV* |
| TREM.PRIN.-6. | Tremblaya princeps 6 | APSKRFTMVTNDSKFALVGRAAV* |
| TREP.DENT. | Treponema denticola | AENNDSFDYALAA* |
| TREP.PALL. | Treponema pallidum | ANSDSFDYALAA* |
| TRIC.ERYT. | Trichodesmium erythraeum | ANNIVPFARKQVAALA* |
| TROP.WHIP. | Tropheryma whipplei | ANLKRTDLSLAA* |
| UNCU.AED1. | Uncultured bacterium aedes1 | ANDERFALAA* |
| UNCU.BON2.PA. | Uncultured bacterium bone2 | ANDNRAPMAMAA* |
| UNCU.BON3. | Uncultured bacterium bone3 | ANDETYALAA* |
| UNCU.CION. | Uncultured bacterium ciona1 | ATLTTTGSANDEFFDARLRA* |
| UNCU.CRE1. | Uncultured bacterium c_remanei1 | ANDESYALAA* |
| UNCU.FAR1. | Uncultured bacterium farm1 | ANDNYAPVAQAA* |
| UNCU.FAR2. | Uncultured bacterium farm2 | ANNTQFAYAA* |
| UNCU.FAR3. | Uncultured bacterium farm3 | GETRFALAA* |
| UNCU.FAR4. | Uncultured bacterium farm4 | ANDNEALALAA* |
| UNCU.FAR5. | Uncultured bacterium farm5 | ANDNEALAIAA* |
| UNCU.FAR7. | Uncultured bacterium farm7 | ANDETYALAA* |
| UNCU.FAR8. | Uncultured bacterium farm8 | AKSNRTEFALAA* |
| UNCU.FLA1.PA. | Uncultured bacterium flatworm1 | ANDDNYGAQLAA* |
| UNCU.FS-1. | Uncultured FS1 | ANXETYALAA** |
| UNCU.FS-2. | Uncultured FS2 | ANDENYALAA** |
| UNCU.HOO2. | Uncultured bacterium hookworm2 | ADNKRTDFALAA* |
| UNCU.HUM3. | Uncultured bacterium human3 | ANKPAALAA** |
| UNCU.HUM4.PA. | Uncultured bacterium human4 | GKENKKEDYSLLMNASTQSNLAFAF* |
| UNCU.HUM5.PA. | Uncultured bacterium human5 | GKENKKEDYSLLMNASTQSNLAFAF* |
| UNCU.HUM6.PA. | Uncultured bacterium human6 | GKENKKEDYSLLMNASTQSNLAFAF* |
| UNCU.LEM1. | Uncultured LEM1 | ANDETYALAA** |
| UNCU.LEM2. | Uncultured LEM2 | RNDETHALAA* |
| UNCU.MAR1. | Uncultured marine gamma proteobacterium EBAC20E09 | ANNDNYALAA* |
| UNCU.POL1.PA. | Uncultured bacterium pollen1 | ANDNSYALAA* |
| UNCU.QL-1. | Uncultured QL1 | ANVENYALAA** |
| UNCU.RCA1. | Uncultured RCA1 | ANDENYALAA* |
| UNCU.RCA2. | Uncultured RCA2 | SNDENYALAA** |
| UNCU.RCA3. | Uncultured RCA3 | ANDENYALAA** |
| UNCU.RCA4. | Uncultured RCA4 | ANDETYALAA** |
| UNCU.RCA7. | Uncultured RCA7 | ANDETYALAA** |
| UNCU.RCA8. | Uncultured RCA8 | ANDETYALAA** |
| UNCU.RIC2. | Uncultured bacterium rice2 | ANDERFALAA* |
| UNCU.RIC4. | Uncultured bacterium rice4 | ANDDNYALAA* |
| UNCU.ROO1.PA. | Uncultured bacterium root1 | ANDERFALAA* |
| UNCU.STR1. | Uncultured bacterium stronglyoides1 | ANDERFALAA* |
| UNCU.TOX1.PA. | Uncultured bacterium Toxoplasma2 | GKENKKEDYSLLMNASTQSNLAFAF* |
| UNCU.TOX2.PA. | Uncultured bacterium Toxoplasma1 | GKENKKEDYSLLMNASTQSNLAFAF* |
| UNCU.U01A. | Uncultured U01a | ANDSNYALAA* |
| UNCU.U01B. | Uncultured U01b | ANDSNYALAA* |
| UNCU.U02-. | Uncultured U02 | ANDEQFALAA* |
| UNCU.U04-.PA. | Uncultured U04 (partial sequence) | ANDETYALAA* |
| UNCU.VLS1.-1. | Uncultured VLS1 | ANDENYALAA** |
| UNCU.VLS1.-3. | Uncultured VLS11 | ANDENYALAA** |
| UNCU.VLS1.-4. | Uncultured VLS13 | ANDENYALAA** |
| UNCU.VLS3. | Uncultured VLS3 | ANDENYALAA** |
| UNCU.VLS4. | Uncultured VLS4 | ANDENYALAA** |
| UNCU.VLS5. | Uncultured VLS5 | ANDETYALAA** |
| UNCU.VLS6. | Uncultured VLS6 | ANDENYALAA** |
| UNCU.VLS7. | Uncultured VLS7 | ANDENYALAA** |
| UNCU.VLS8. | Uncultured VLS8 | ANDENYALAA** |
| UNCU.VLS9. | Uncultured VLS9 | ANDENYALAA* |
| UNCU.VLW1. | Uncultured VLW1 | ANDENYALAA** |
| UNCU.VLW2. | Uncultured VLW2 | ANDENYALAA** |
| UNCU.VLW3. | Uncultured VLW3 | ANDENYALAA** |
| UNCU.VLW4. | Uncultured VLW4 | ANDENYALAA** |
| UNCU.VLW5. | Uncultured VLW5 | ANDENYALAA** |
| UNCU.VLW6. | Uncultured VLW6 | ANDENYALAA** |
| UNCU.WEE1.PA. | Uncultured bacterium weevil1 | ANDSQYESAVLAA* |
| UNCU.WHA1. | Uncultured bacterium whale1 | ANDDNYALAA |
| UNCU.WHA2. | Uncultured bacterium whale2 | ANDNRAPVALAA* |
| UNCU.WHA3. | Uncultured whale3 | ANDNTEALAVAA* |
| UNCU.WHA4. | Uncultured bacterium whale4 | ANDNFAEEVRLAA* |
| UNCU.WHA5.PA. | Uncultured whale5 | ANDNYAEARLA |
| UNCU.WHA6. | Uncultured bacterium whale6 | ANDNYAEARLAA* |
| UNCU.WW-1. | Uncultured WW1 | ANDENYALAA** |
| UNCU.WW10. | Uncultured WW10 | ANDENYALAV** |
| UNCU.WW11. | Uncultured WW11 | ANDDNYALAA* |
| UNCU.WW-2. | Uncultured WW2 | ANDENYALAA** |
| UNCU.WW-3. | Uncultured WW3 | ANDENYALAA** |
| UNCU.WW-4. | Uncultured WW4 | ANDGNYALAA** |
| UNCU.WW-5. | Uncultured WW5 | ANDENYALAA** |
| UNCU.WW-6. | Uncultured WW6 | ANDENYALAA** |
| UNCU.WW-7. | Uncultured WW7 | ANDENCALAA** |
| UNCU.WW-8. | Uncultured WW8 | ANDENYALAA** |
| UNCU.WW-9. | Uncultured WW9 | ANDENYALAA** |
| UREA.UREA. | Ureaplasma urealyticum | AENKKSSEVELNPAFMASATNANYAFAY* |
| VARI.PARA. | Variovorax paradoxus | ANDERFALAA* |
| VERR.SPIN. | Verrucomicrobium spinosum DSM4136 | ANSNELALAA* |
| VIBR.CHOL. | Vibrio cholerae | ANDENYALAA* |
| VIBR.FISC. | Vibrio fischeri | ANDENYALAA** |
| VIBR.PARA. | Vibrio parahaemolyticus RIMD 2210633 | ANDENYALAA* |
| VIBR.VULN. | Vibrio vulnificus | ANDENYALAA** |
| WIGG.BREV. | Wigglesworthia brevipalpis | AKHKYNEPALLAA* |
| WOLB.SPEC.-1. | Wolbachia pipientis (species wMel) endosymbiont of Drosophila melanogaster | ANDNFAAEDNVDAIAA* |
| WOLB.SPEC.-2. | Wolbachia species endosymbiont of Brugia malayi (nematode) | ANDNFAAEGDVAVAA* |
| WOLB.SPEC.-3. | Wolbachia pipientis endosymbiont of Culex quinquefasciatus | ANDNFAAEDNVALAA* |
| WOLI.SUCC. | Wolinella succinogenes | ANNANYAPAYAKAA* |
| XANT.AXON. | Xanthomonas axonpodis | ANDDNYGSDFAIAA* |
| XANT.CAMP. | Xanthomonas campestris | ANDDNYGSDFAIAA* |
| XANT.ORYZ. | Xanthomonas oryzae pv. oryzae KACC10331 | ANDDNYGSDFAIAA* |
| XYLE.FAST.-1. | Xylella fastidiosa strain 9a5c | ANEDNFAVAA* |
| XYLE.FAST.-2. | Xylella fastidiosa Dixon Strain | ANEDNFALAA* |
| XYLE.FAST.-3. | Xylella fastidiosa Ann-1 Strain | ANEDNFAIAA* |
| XYLE.FAST.-4. | Xylella fastidiosa strain Temecula1 (Temecula1) | ANEDNFALAA* |
| YERS.ENTE. | Yersinia entericolitica | ANDSQYESAALAA* |
| YERS.PEST. | Yersinia pestis | ANDENYALAA** |