Webserver for Aligning structural RNAs

Results

You can download the results in the following formats: fasta clustal stockholm col 


 
 CMfinder 


 CPU time:
 3.43
 

Average sequence ID:
 0.345782356729
 

Average free energy:
 1.36666666667
 

Average covariation:
 0.321825396825
 

Average basepair probability:
 0.566704872777
 

Canonical basepairs:
 NA
 

Sequence and structure consensus for CMfinder 
gSMBMRKGYYKYSMKKUSUCUKUMUSKCWAYWBKYGMHKAUGYGRUGYDMHBRCWCASYCRUACAGBRVKYGSWGRSRBRRMRWCACRRS
RGARMMMGKYMCMRgc

........(((((..((....((((((((.(.(.(.(....((.................))....)).).).))))))))....))..)
))))............


The alignment colored using colorrna.pl of the Vienna package 

Cluster tree of the methods Tree

Table