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Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
B
A
D
A
V
G
G
OOD
hsa-mir-516b-1
G
A
A
-
U
A
U
C
U
C
A
G
G
C
U
G
U
G
A
C
C
A
U
C
U
G
G
A
G
G
U
A
A
G
A
A
G
C
A
C
U
U
U
C
U
G
U
U
U
U
G
U
G
A
A
A
G
A
A
A
hsa-mir-516b-2
G
A
A
-
G
A
-
U
C
U
C
A
U
G
A
U
G
U
G
A
C
C
A
U
C
U
G
G
A
G
G
U
A
A
G
-
A
A
G
C
A
C
U
U
U
G
U
-
G
U
U
U
U
G
U
G
A
A
A
G
hsa-mir-517a
A
G
A
A
G
A
-
U
C
U
C
A
G
G
C
A
G
U
G
A
C
C
C
U
C
U
A
G
A
U
G
G
A
A
-
-
G
C
A
C
U
G
U
C
U
G
U
U
G
U
A
U
A
A
A
A
G
A
A
A
hsa-mir-517b
A
G
A
A
G
A
C
C
U
C
A
U
G
C
U
-
G
U
G
A
C
C
C
U
C
U
A
G
A
U
G
G
A
A
-
-
G
C
A
C
U
G
U
C
U
G
U
U
G
-
U
C
U
A
A
G
A
-
A
A
hsa-mir-517c
A
G
A
A
G
A
-
U
C
U
C
A
G
G
C
A
G
U
G
A
C
C
C
U
C
U
A
G
A
U
G
G
A
A
-
-
G
C
A
C
U
G
U
C
U
G
U
U
G
-
U
C
U
A
A
G
A
-
A
A
hsa-mir-518b
A
A
G
A
A
U
A
U
G
U
C
A
U
G
C
U
G
U
G
G
C
C
C
U
C
C
A
G
A
G
G
G
A
A
-
-
G
C
G
C
U
U
U
C
U
G
U
U
G
U
C
U
G
A
A
A
G
A
A
A
hsa-mir-518c
A
G
A
A
G
A
-
U
C
U
C
A
U
G
C
U
G
U
G
A
C
U
C
U
C
U
G
G
A
G
G
G
A
A
-
-
G
C
A
C
U
U
U
C
U
G
U
U
G
U
C
U
G
A
A
A
G
A
A
A
hsa-mir-518e
C
A
A
-
G
A
-
U
C
U
C
A
G
G
C
U
G
U
G
A
C
C
C
U
C
U
A
G
A
G
G
G
A
A
-
-
G
C
G
C
U
U
U
C
U
G
U
U
G
G
C
U
A
A
A
A
G
A
A
A
hsa-mir-518f
G
A
A
-
G
A
-
U
C
U
C
A
U
G
C
U
G
U
G
A
C
C
C
U
C
U
A
G
A
G
G
G
A
A
-
-
G
C
A
C
U
U
U
C
U
C
U
U
G
U
C
U
A
A
A
A
G
A
A
A
hsa-mir-519a-1
G
A
A
-
G
A
C
C
U
C
A
G
G
C
U
G
U
G
A
C
A
C
U
C
U
A
G
A
G
G
G
A
A
G
-
-
C
G
C
U
U
U
C
U
-
G
U
U
G
U
C
U
G
A
A
A
G
A
-
A
hsa-mir-519a-2
A
G
A
A
G
A
-
U
C
U
C
A
G
G
C
U
G
U
G
U
C
C
C
U
C
U
A
C
A
G
G
G
A
A
-
-
G
C
G
C
U
U
U
C
U
G
U
U
G
U
C
U
G
A
A
A
G
A
A
A
hsa-mir-519d
A
G
A
A
G
A
U
C
C
C
A
U
G
C
U
G
U
G
A
C
C
C
U
C
C
A
A
A
G
G
G
A
A
G
-
-
C
G
C
U
U
U
C
U
G
U
U
U
G
U
U
U
U
C
U
C
U
U
A
A
hsa-mir-519e
G
A
G
A
A
G
A
U
C
U
C
A
U
G
C
A
G
U
C
A
U
U
C
U
C
C
A
A
A
A
G
G
G
A
-
-
G
C
A
C
U
U
U
C
U
G
U
-
-
U
U
-
G
A
A
A
G
A
A
A
hsa-mir-520b
A
A
G
A
A
G
A
U
G
U
C
A
G
G
C
U
G
U
G
U
C
C
C
U
C
U
A
C
A
G
G
G
A
A
-
-
G
C
G
C
U
U
U
C
U
G
U
U
G
U
C
U
G
A
A
A
G
A
A
A
hsa-mir-520e
A
A
G
A
C
U
G
U
C
U
C
C
U
G
C
U
G
U
G
A
C
C
C
U
C
A
A
G
A
U
G
G
A
A
-
-
G
C
A
G
U
U
U
C
U
G
U
U
G
U
C
U
G
A
A
A
G
G
A
A
hsa-mir-520f
G
A
G
-
G
A
-
U
C
U
C
A
G
G
C
U
G
U
G
A
C
C
C
U
C
U
A
A
A
G
G
G
A
A
-
-
G
C
G
C
U
U
U
C
U
G
U
G
G
U
C
A
G
A
A
A
G
A
A
A
hsa-mir-520g
A
G
A
U
-
C
C
C
A
U
G
C
U
G
U
G
A
C
C
C
U
C
U
A
G
A
G
-
G
A
A
G
C
A
C
-
U
U
U
C
U
G
U
U
U
G
U
U
G
U
C
U
-
-
G
A
G
A
A
A
hsa-mir-520h
G
A
A
G
A
U
C
C
C
A
U
G
C
U
G
U
G
A
C
C
C
U
C
U
A
G
A
G
G
-
A
A
G
C
A
C
U
U
U
C
U
G
U
U
U
G
U
U
G
U
C
U
-
-
G
A
G
A
A
A
hsa-mir-521-1
A
G
A
A
G
A
-
U
C
U
C
A
G
G
C
U
G
U
G
A
C
C
C
U
C
C
A
A
A
G
G
G
A
A
-
-
G
A
A
C
U
U
U
C
U
G
U
U
G
U
C
U
A
A
A
A
G
A
A
A
hsa-mir-521-2
A
G
A
A
G
G
-
U
C
U
C
G
G
G
C
U
G
U
G
A
C
U
C
U
C
C
A
A
A
G
G
G
A
A
-
-
G
A
A
U
U
U
U
C
U
C
U
U
G
U
C
U
A
A
A
A
G
A
A
A
hsa-mir-522
G
A
A
-
G
A
-
U
C
U
C
A
G
G
C
U
G
U
G
U
C
C
C
U
C
U
A
G
A
G
G
G
A
A
-
-
G
C
G
C
U
U
U
C
U
G
U
U
G
U
C
U
G
A
A
A
G
A
A
A
hsa-mir-523
G
A
A
-
G
A
-
U
C
U
C
A
U
G
C
U
G
U
G
A
C
C
C
U
C
U
A
G
A
G
G
G
A
A
-
-
G
C
G
C
U
U
U
C
U
G
U
U
G
U
C
U
G
A
A
A
G
A
A
A
hsa-mir-526a-1
G
A
A
-
G
A
G
C
U
C
A
G
G
C
U
G
U
G
A
C
C
C
U
C
U
A
G
A
G
G
G
A
A
G
-
-
C
A
C
U
U
U
C
U
-
G
U
U
G
C
U
U
-
G
A
A
A
G
A
A
hsa-mir-526a-2
G
A
A
-
G
A
-
-
U
C
U
C
G
U
G
C
U
G
U
G
A
C
C
C
U
C
U
A
G
A
G
G
G
A
A
-
-
G
C
A
C
U
U
U
C
-
U
-
G
U
U
G
A
A
A
G
A
A
A
A
hsa-mir-526b
G
A
A
G
A
U
G
U
C
A
G
G
C
U
G
U
G
A
C
C
C
U
C
U
U
G
A
G
G
G
A
A
G
C
-
-
A
C
U
U
U
C
U
G
U
-
U
-
G
U
C
U
G
A
A
A
G
A
-
A
hsa-mir-527
A
A
G
A
A
G
A
U
C
U
C
A
A
G
C
U
G
U
G
A
C
-
U
G
-
C
A
A
A
G
G
G
A
A
-
-
G
C
C
C
U
U
U
C
U
G
U
U
G
U
C
U
A
A
A
A
G
A
A
A
CONS STRUCTURE
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hsa-mir-516b-1
A
G
A
A
A
G
U
G
C
U
U
C
C
-
U
U
U
C
A
G
A
G
G
G
U
U
A
C
-
U
C
U
U
U
G
A
G
-
-
A
A
A
A
G
C
-
A
-
-
hsa-mir-516b-2
A
A
A
G
U
G
C
U
U
-
-
C
C
U
U
U
C
A
G
A
G
G
G
U
U
A
C
U
-
C
U
U
U
G
A
G
A
A
A
A
G
C
A
G
C
-
A
U
U
hsa-mir-517a
A
G
A
U
C
G
U
G
C
A
U
C
C
C
U
U
U
A
G
A
G
U
G
U
U
A
C
U
G
U
-
U
U
G
A
G
A
-
C
-
-
A
A
G
C
A
A
C
-
hsa-mir-517b
A
G
A
U
C
G
U
G
C
A
U
C
C
C
U
U
U
A
G
A
G
U
G
U
U
A
C
-
-
U
G
U
U
U
G
A
G
-
A
A
A
A
G
C
A
A
C
G
U
hsa-mir-517c
A
G
A
U
C
G
U
G
C
A
U
C
C
U
U
U
U
A
G
A
G
U
G
U
U
A
C
U
G
U
-
U
U
G
A
G
A
A
A
A
U
C
A
A
C
-
G
U
-
hsa-mir-518b
A
C
A
A
A
G
C
G
C
U
C
C
C
C
U
U
U
A
G
A
G
G
U
U
U
A
C
G
G
U
-
U
U
G
A
-
G
-
U
-
A
A
A
G
C
-
A
G
-
hsa-mir-518c
A
C
A
A
A
G
C
G
C
U
U
C
U
C
U
U
U
A
G
A
G
U
G
U
U
A
C
G
G
U
-
U
U
G
A
G
A
-
-
-
A
A
A
G
C
A
A
C
-
hsa-mir-518e
A
G
A
A
A
G
C
G
C
U
U
C
C
C
U
U
C
A
G
A
G
U
G
U
U
A
A
C
G
C
U
U
U
G
A
G
A
-
-
-
A
A
A
G
C
A
A
C
-
hsa-mir-518f
A
G
A
A
A
G
C
G
C
U
U
C
U
C
U
U
U
A
G
A
G
G
A
U
U
A
C
-
U
C
U
U
U
G
A
G
A
-
-
-
A
A
A
G
C
A
A
C
G
hsa-mir-519a-1
A
G
G
A
A
A
G
U
G
C
A
U
C
C
U
U
U
U
A
G
A
G
U
G
U
U
A
C
-
U
G
U
U
U
G
A
G
-
-
A
A
A
A
G
C
A
A
C
A
hsa-mir-519a-2
G
G
A
A
A
G
U
G
C
A
U
C
C
U
U
U
U
A
G
A
G
U
G
U
U
A
C
U
G
U
-
U
U
G
A
G
A
-
-
-
A
A
A
G
C
A
A
C
-
hsa-mir-519d
A
-
C
A
A
A
G
U
G
C
C
U
C
C
C
U
U
U
A
G
A
G
U
G
U
U
A
C
C
G
-
U
U
U
G
G
G
-
-
A
A
A
A
G
C
-
-
C
A
hsa-mir-519e
A
C
A
A
A
G
U
G
C
C
U
C
C
U
U
U
U
A
G
A
G
U
G
U
U
A
C
U
G
U
-
U
U
G
A
G
A
-
-
A
A
A
A
C
C
A
C
G
U
hsa-mir-520b
A
G
A
A
A
G
U
G
C
U
U
C
C
U
U
U
U
A
G
A
G
G
G
U
U
A
C
C
G
U
-
U
U
-
-
-
A
A
G
A
A
A
A
G
C
A
A
-
-
hsa-mir-520e
A
G
A
A
A
G
U
G
C
U
U
C
C
U
U
U
U
U
G
A
G
G
G
U
U
A
C
U
G
-
U
U
U
G
A
G
A
-
-
-
A
A
A
G
C
A
A
-
-
hsa-mir-520f
A
G
C
A
A
G
U
G
C
U
U
C
C
U
U
U
U
A
G
A
G
G
G
U
U
A
C
C
G
U
-
U
U
G
G
G
A
-
-
-
A
A
A
G
C
A
A
U
G
hsa-mir-520g
A
A
A
C
A
-
A
A
G
U
G
C
U
U
C
C
C
U
U
U
A
G
A
G
U
G
U
U
A
-
C
C
G
U
U
U
G
G
G
A
A
A
A
G
C
A
G
-
U
hsa-mir-520h
A
A
A
C
A
A
A
G
U
G
C
U
U
C
C
C
U
U
U
A
G
A
-
-
G
U
U
A
C
-
U
G
U
U
U
G
G
-
G
A
A
A
A
G
C
A
G
-
U
hsa-mir-521-1
A
G
A
A
C
G
C
A
C
U
U
C
C
C
U
U
U
A
G
A
G
U
G
U
U
A
C
C
G
U
-
G
U
G
A
G
A
-
-
-
A
A
A
G
C
A
A
C
-
hsa-mir-521-2
A
G
A
A
C
G
C
A
C
U
U
C
C
C
U
U
U
A
G
A
G
U
G
U
U
A
C
C
G
U
-
G
U
G
A
G
A
-
-
-
A
A
A
G
C
A
A
U
-
hsa-mir-522
A
G
A
A
A
A
U
G
G
U
U
C
C
C
U
U
U
A
G
A
G
U
G
U
U
A
C
G
-
C
U
U
U
G
A
G
A
-
-
-
A
A
A
G
C
A
U
C
G
hsa-mir-523
A
G
A
A
C
G
C
G
C
U
U
C
C
C
U
A
U
A
G
A
G
G
G
U
U
A
C
C
C
-
U
U
U
G
A
G
A
-
-
-
A
A
A
G
C
A
G
C
A
hsa-mir-526a-1
G
A
G
A
A
A
G
C
G
C
U
U
C
C
U
U
U
U
A
G
A
G
G
A
U
U
A
C
-
U
C
U
U
U
G
A
G
-
A
A
A
A
A
-
C
A
A
C
A
hsa-mir-526a-2
G
A
A
C
A
U
G
C
A
U
C
C
U
U
U
C
A
G
A
G
G
G
U
U
A
C
U
C
-
U
U
U
G
A
G
A
A
G
A
G
C
A
A
C
G
U
U
U
A
hsa-mir-526b
G
-
A
G
A
A
A
G
U
G
C
U
U
C
C
U
U
U
U
A
G
A
G
G
C
U
U
A
C
-
U
G
U
C
U
G
A
-
G
A
A
A
A
G
C
A
A
C
G
hsa-mir-527
A
G
A
A
A
G
U
G
C
U
U
C
C
C
U
U
U
G
G
U
G
A
A
U
U
A
C
G
G
U
-
U
U
G
A
G
A
-
-
-
A
A
A
G
C
A
A
C
G
CONS STRUCTURE
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Consensus
CPU time:
0.00
Average sequence ID:
0.542926416031
Average free energy:
-26.9730769231
Average covariation:
0.353867521368
Average basepair probability:
0.742850019199
Canonical basepairs:
0.860664523044
Sequence and structure consensus for Consensus
RRAAGAMYCYCAKSCUGUGMCCCYCYARRGGGAAmmGCVCUUUYUGUUGUYURAAAGAAAAGAAMGYGCUYCCYUUUWGAGKGUUACYSY YUUKRGRrrAAAAGCAACD
.........((((..(((((((((((((((((((..(((((((((.(..(((...))).))))))))))))))))))))))))))))).. .))))..............
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR