Home
Research
Resources
Publications
About
People
Events
Jobs
News
Contact
Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
B
A
D
A
V
G
G
OOD
hsa-mir-122
-
G
A
-
-
G
U
U
U
C
C
U
U
A
-
G
C
A
G
-
A
G
C
U
G
U
G
G
A
G
U
G
U
G
A
C
A
A
U
G
G
U
G
U
U
-
U
G
-
U
G
U
C
U
A
A
A
C
U
-
hsa-mir-32
U
C
U
-
G
C
U
U
G
C
-
U
C
U
-
G
G
U
G
G
A
G
A
U
A
U
U
G
C
A
C
A
U
U
A
C
U
A
A
G
U
U
G
C
A
-
U
G
U
U
G
U
C
A
C
G
G
C
C
-
hsa-mir-549
A
G
A
C
A
U
G
C
A
A
C
U
C
A
A
G
A
A
U
A
U
A
U
U
G
A
G
A
G
C
U
C
A
U
C
C
A
U
A
G
U
U
G
U
C
-
A
C
U
G
U
C
U
C
A
A
-
A
U
-
hsa-mir-552
A
A
C
C
A
U
U
C
A
A
-
A
U
A
-
U
A
C
C
A
C
A
G
U
U
U
G
U
U
U
A
A
C
C
U
U
U
U
G
C
C
U
G
U
U
-
G
G
U
U
G
A
A
G
A
U
G
C
C
-
hsa-mir-559
G
A
-
U
G
-
A
G
C
U
C
-
C
A
G
U
A
A
C
A
U
C
U
U
A
A
A
G
U
A
A
A
U
A
U
G
C
A
C
C
A
A
A
A
U
-
U
A
C
U
U
U
U
G
G
U
A
A
A
-
hsa-mir-561
U
U
C
A
U
C
C
A
C
C
-
A
G
U
-
C
C
U
C
C
A
G
G
A
A
C
A
U
C
A
A
G
G
A
U
C
U
U
A
A
A
C
U
U
U
-
G
C
C
A
G
A
G
C
U
A
C
A
A
-
hsa-mir-577
-
-
G
-
U
A
U
U
-
U
G
G
G
-
-
G
G
A
G
U
G
A
A
G
A
G
U
A
G
A
U
A
A
A
A
U
A
U
U
G
G
U
A
C
C
-
U
G
A
U
G
A
A
U
C
U
G
A
G
-
hsa-mir-579
A
U
U
A
G
-
G
U
U
A
-
A
U
G
-
C
A
A
A
A
G
U
A
A
U
C
G
C
G
G
U
U
U
G
U
G
-
C
C
A
G
A
U
G
A
C
G
A
U
U
U
G
A
A
U
U
A
A
U
-
hsa-mir-580
U
A
-
A
A
-
A
U
U
U
C
-
C
A
A
U
U
G
G
A
A
C
C
U
A
A
U
G
A
U
U
C
A
U
C
A
G
A
C
U
C
A
G
A
U
-
A
-
U
U
U
A
A
G
U
U
A
A
C
-
hsa-mir-586
-
A
A
-
-
G
A
C
A
U
G
G
G
G
U
-
-
A
A
A
A
C
C
A
U
U
A
U
G
C
A
U
U
G
U
A
U
U
U
U
U
-
A
G
G
-
U
C
C
C
A
A
U
A
C
A
U
G
U
-
hsa-mir-605
-
C
-
U
C
-
U
-
A
G
C
-
C
C
U
A
G
-
C
U
U
G
G
U
U
C
U
A
A
A
U
C
C
C
A
U
G
G
U
G
C
C
U
U
C
-
U
C
C
U
U
G
G
G
A
A
A
A
A
-
hsa-mir-606
-
-
-
-
-
-
-
-
-
-
-
U
G
U
A
U
C
C
U
U
G
G
U
U
U
U
U
A
G
U
A
G
U
U
U
U
A
C
U
A
U
G
A
U
G
-
A
G
G
U
G
U
G
C
-
C
A
U
C
-
hsa-mir-607
-
U
U
-
G
C
C
U
A
A
-
A
G
U
-
C
A
C
A
C
A
G
G
U
U
A
U
A
G
A
U
C
U
G
G
A
U
U
G
G
A
A
C
C
C
-
A
G
G
G
A
G
C
C
A
G
A
C
U
-
hsa-mir-609
C
A
U
G
-
C
U
G
C
U
C
-
G
G
-
C
U
G
U
U
C
C
U
A
G
G
G
U
G
U
U
U
C
U
C
U
C
A
U
C
U
C
U
G
G
U
C
U
A
U
A
A
U
G
G
G
U
U
A
-
hsa-mir-610
A
U
-
U
U
-
G
U
C
U
A
-
U
U
U
G
U
C
-
U
U
A
G
G
U
G
A
G
C
U
A
A
A
U
G
U
G
U
G
C
U
G
G
G
A
-
C
A
C
A
U
U
U
G
A
G
C
-
-
C
hsa-mir-624
-
U
A
-
-
U
A
U
A
A
-
U
G
C
-
U
G
U
U
U
C
A
A
G
G
U
A
G
U
A
C
C
A
G
U
-
A
C
C
U
U
G
U
G
U
-
U
C
A
G
U
G
G
A
A
C
C
A
A
-
hsa-mir-625
G
U
-
G
G
-
U
-
A
A
G
-
G
G
U
A
G
A
G
G
G
A
U
G
A
G
G
G
G
G
A
A
A
G
U
U
C
U
A
U
A
G
U
C
C
-
U
G
-
U
A
A
U
U
A
G
A
U
C
-
hsa-mir-627
U
G
-
A
A
-
U
U
A
C
U
-
U
A
U
U
A
C
-
U
G
G
U
A
G
U
G
A
G
U
C
U
C
U
A
A
G
A
A
A
A
G
A
G
G
-
A
G
G
U
G
G
U
U
G
U
U
-
-
U
hsa-mir-629
C
C
-
C
U
-
U
U
C
C
C
-
A
G
G
G
G
-
A
G
G
G
G
C
U
G
G
G
U
U
U
A
C
G
U
U
G
G
G
A
G
A
A
C
U
-
U
U
U
A
C
G
G
U
G
A
A
C
C
-
hsa-mir-642
-
A
-
-
-
G
U
U
U
A
U
-
C
U
-
G
A
G
U
U
G
G
G
A
G
G
G
U
C
C
C
U
C
U
C
C
A
A
A
U
G
U
G
U
C
U
U
G
-
G
G
G
U
G
G
G
G
G
A
-
hsa-mir-934
-
A
A
-
-
C
U
U
G
A
-
G
A
A
-
A
U
A
A
G
G
C
U
U
C
U
G
U
C
U
A
C
U
A
C
U
G
G
A
G
A
C
A
C
U
-
G
G
-
U
A
G
U
A
U
A
A
A
A
-
hsa-mir-942
C
A
-
G
C
-
A
A
A
C
A
-
U
U
A
G
G
A
G
A
G
U
A
U
C
U
U
C
U
C
U
G
U
U
U
U
G
G
C
C
A
U
G
U
G
-
U
G
-
U
A
C
U
C
A
C
A
G
C
C
hsa-mir-944
A
-
-
U
U
U
A
U
G
U
U
-
C
C
-
A
G
A
C
A
C
A
U
C
U
C
A
U
C
U
G
A
U
A
U
A
C
A
A
U
A
U
U
U
U
-
C
U
U
A
A
A
U
U
G
U
A
U
A
-
CONS STRUCTURE
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
(
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
hsa-mir-122
A
U
C
A
A
-
A
C
G
C
C
A
U
U
A
U
C
A
C
A
C
U
A
A
A
U
A
G
C
U
A
C
U
G
C
U
A
G
G
C
-
-
-
-
-
-
A
A
U
C
C
U
U
C
C
C
hsa-mir-32
U
C
A
A
-
U
G
C
A
A
U
U
U
A
G
U
G
-
U
G
U
G
U
G
A
U
A
U
U
U
U
C
-
A
C
A
U
G
A
G
U
-
-
-
-
-
G
C
A
U
-
G
C
-
A
C
hsa-mir-549
C
A
G
U
G
A
C
A
A
C
U
A
U
-
G
G
A
U
G
A
G
C
U
C
U
U
A
A
U
A
-
U
A
U
C
C
C
A
G
G
C
-
-
-
-
-
A
-
-
-
-
-
C
U
G
U
hsa-mir-552
U
U
U
C
-
A
A
C
A
G
G
U
G
A
C
U
G
G
U
U
A
G
A
C
A
A
A
C
U
G
-
U
G
G
U
A
U
A
U
A
C
-
-
-
-
-
A
C
-
-
-
-
A
G
G
A
hsa-mir-559
U
-
A
C
A
G
U
U
U
U
G
G
U
G
C
A
U
A
U
U
U
A
C
U
U
U
A
G
G
A
U
G
U
U
-
A
C
U
G
G
A
-
-
-
-
-
G
C
U
C
C
C
-
-
-
A
hsa-mir-561
A
G
G
C
A
-
A
A
G
U
U
U
A
A
G
A
U
C
C
U
U
G
A
A
G
U
U
C
C
U
-
G
G
G
G
G
A
A
C
C
A
-
-
-
-
-
U
G
G
-
-
-
-
A
U
G
hsa-mir-577
G
C
-
C
A
G
G
U
U
U
C
A
A
U
A
C
U
U
U
A
U
C
U
G
C
U
C
U
U
C
-
A
U
U
U
C
C
C
C
A
U
-
-
-
-
-
A
U
C
U
A
C
U
U
A
C
hsa-mir-579
A
A
A
U
-
-
U
C
A
U
U
U
G
G
U
A
U
A
A
A
C
C
G
C
G
A
U
U
A
U
-
U
U
U
U
G
C
A
U
C
-
-
-
-
-
-
A
A
C
U
U
A
C
U
A
-
hsa-mir-580
-
-
A
G
U
A
U
U
U
G
A
G
A
A
U
G
A
U
G
A
A
U
C
A
U
U
A
G
G
U
U
C
C
G
G
U
C
A
G
A
A
-
-
-
-
-
A
U
U
U
U
-
-
U
C
A
hsa-mir-586
G
G
G
-
C
C
-
C
U
A
A
A
A
A
U
A
C
A
A
U
G
C
A
U
A
A
U
G
G
U
U
U
U
-
U
C
A
C
U
C
U
-
-
U
U
-
A
U
C
U
U
C
U
U
A
-
hsa-mir-605
C
-
A
G
A
G
A
A
G
G
C
A
C
U
A
U
G
A
G
A
U
U
U
A
G
A
A
U
C
A
A
G
-
U
U
A
G
G
A
C
U
-
-
-
-
-
G
C
A
G
A
U
A
C
A
G
hsa-mir-606
C
A
C
C
C
C
A
U
C
A
U
A
G
U
A
-
A
A
C
U
A
C
U
G
A
A
A
A
U
C
A
A
A
G
A
U
A
C
A
A
G
U
G
C
C
U
G
A
C
C
A
C
U
U
C
U
hsa-mir-607
G
C
C
U
G
G
G
U
U
C
A
A
A
U
-
C
C
A
G
A
U
C
U
A
U
A
A
C
U
U
-
G
U
G
U
G
A
C
U
U
U
-
-
-
-
-
G
G
G
-
-
C
G
A
G
U
hsa-mir-609
A
A
U
A
G
-
U
A
G
A
G
A
U
G
A
G
G
G
C
A
A
C
A
C
C
C
U
A
G
G
-
A
A
C
A
G
C
A
G
A
G
-
-
-
-
-
G
A
A
-
-
-
-
C
C
C
hsa-mir-610
A
A
A
U
G
U
C
C
C
A
G
C
A
C
A
C
A
U
U
U
A
G
C
U
C
A
C
A
U
A
A
G
A
A
A
A
A
U
G
G
A
-
-
-
-
-
C
-
U
C
U
-
-
A
G
U
hsa-mir-624
G
G
U
A
-
A
A
C
A
C
A
A
G
G
U
A
U
U
G
G
U
A
U
U
A
C
C
U
U
G
-
A
G
A
U
A
G
C
A
U
U
-
-
-
-
-
A
C
A
C
C
U
A
A
G
U
hsa-mir-625
-
-
U
C
A
G
G
A
C
U
A
U
A
G
A
A
C
U
U
U
C
C
C
C
C
U
C
A
U
C
C
C
U
C
U
G
C
C
-
C
U
-
-
-
-
-
C
U
A
C
C
A
A
C
U
G
hsa-mir-627
U
C
-
C
U
C
C
U
C
U
U
U
U
C
U
U
U
G
A
G
A
C
U
C
A
C
U
A
C
C
A
A
U
A
A
U
A
A
G
A
A
-
-
-
-
-
A
U
A
C
U
-
-
A
C
U
hsa-mir-629
A
-
G
G
A
G
G
U
U
C
U
C
C
C
A
A
C
G
U
A
A
G
C
C
C
A
G
C
C
C
C
U
-
C
C
C
C
U
C
U
G
-
-
-
-
-
C
C
U
G
C
C
-
-
U
C
hsa-mir-642
U
C
A
A
G
-
A
C
A
C
A
U
U
U
G
G
A
G
A
G
G
G
A
A
C
C
U
C
C
C
-
A
A
C
U
C
G
G
C
C
U
-
-
-
-
-
C
U
G
C
C
A
U
C
A
U
hsa-mir-934
C
C
-
C
A
-
G
A
G
U
C
U
C
C
A
G
U
A
A
U
G
G
A
C
G
G
G
A
G
C
C
U
U
A
U
U
U
C
U
A
U
-
-
-
-
-
C
A
C
U
C
A
G
U
G
U
hsa-mir-942
C
C
U
C
A
C
A
C
A
U
G
G
C
C
G
A
A
A
C
A
G
A
G
A
A
G
U
U
A
C
U
U
U
C
-
C
U
A
A
U
A
-
-
-
-
-
U
U
U
G
C
-
-
-
-
C
hsa-mir-944
A
A
G
A
G
A
A
A
U
U
A
U
U
G
U
A
C
A
U
C
G
G
A
U
G
A
G
C
U
G
U
-
G
U
C
U
G
G
G
A
U
U
A
-
-
-
-
-
-
-
-
A
G
U
A
U
CONS STRUCTURE
.
.
.
.
.
.
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
)
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
.
Consensus
CPU time:
0.00
Average sequence ID:
0.229233694063
Average free energy:
-29.3030434783
Average covariation:
1.12574110672
Average basepair probability:
0.879188461562
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
MAWVKBUUMHCDSDwGRMSWGVKUKKGGSWWMYKYYGWMSRKRBByUSYURRKSRRAMMyMMRCRVRMRYRWWSRRCRBWRSHMVWAMBC HKUSYSMVGMWuryyuVYMYYMUYVY
....................((((((((((((((((((((((((......................)))))))))))))))))))))))) ..........................
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR
