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Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
B
A
D
A
V
G
G
OOD
mir-103-1
G
G
A
A
G
U
U
U
U
C
U
U
A
C
U
G
C
C
C
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C
G
G
C
U
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C
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A
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A
G
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C
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C
C
U
U
G
U
U
G
C
A
U
A
U
G
G
A
U
C
A
A
-
mir-103-2
G
A
G
C
U
G
C
G
U
C
U
U
U
G
U
G
C
U
U
U
C
A
G
C
U
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C
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U
U
A
C
A
G
U
G
C
U
G
C
C
U
U
G
U
A
G
C
A
U
U
C
A
G
G
U
C
A
A
-
mir-107
U
U
C
G
A
U
A
U
U
C
U
C
U
C
U
G
C
U
U
U
C
A
G
C
U
U
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U
U
U
A
C
A
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U
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U
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C
C
U
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G
U
G
G
C
A
U
G
G
A
G
U
U
C
A
A
-
mir-217
A
U
-
A
G
U
U
U
U
U
G
A
U
G
U
C
G
C
A
G
A
U
A
C
U
G
C
A
U
-
C
A
G
G
A
A
C
U
G
A
U
U
G
G
A
U
A
A
G
A
A
U
C
A
G
U
C
A
C
C
mir-660
A
U
-
G
A
A
C
U
G
C
U
C
C
U
U
C
U
C
C
C
A
U
A
C
C
C
A
U
U
-
G
C
A
U
A
U
C
G
G
A
G
U
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A
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CONS STRUCTURE
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mir-103-1
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G
C
A
G
C
A
U
U
G
U
A
C
A
G
G
G
C
U
A
U
G
A
A
G
G
C
A
U
U
G
A
-
G
A
C
C
U
G
U
U
C
-
-
U
U
mir-103-2
-
G
C
A
G
C
A
U
U
G
U
A
C
A
G
G
G
C
U
A
U
G
A
A
A
G
A
A
C
C
A
A
-
G
A
A
U
G
G
G
C
U
-
-
G
C
mir-107
-
G
C
A
G
C
A
U
U
G
U
A
C
A
G
G
G
C
U
A
U
C
A
A
A
G
C
A
C
A
G
A
-
G
A
G
C
U
U
G
C
U
-
-
A
C
mir-217
A
U
C
A
G
U
U
C
C
-
U
A
A
U
G
C
A
U
U
-
G
C
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C
A
G
C
A
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A
A
-
A
C
A
A
G
C
A
C
C
A
mir-660
C
U
C
C
U
G
U
G
U
-
G
C
-
A
U
G
G
A
U
U
A
C
A
G
G
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CONS STRUCTURE
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Consensus
CPU time:
0.00
Average sequence ID:
0.426371511068
Average free energy:
-21.698
Average covariation:
0.401612903226
Average basepair probability:
0.768919628374
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
RUVRRUYUUCUYUSUSCYYUMWRCUUCUUUACAGWGCUGMCUUGUKRMAUAUMRRUCAAcmKCAGCWUUGUAMAGGGCUAUSAARGMRCW GAuGAVYUGKCYwcGY
........((((((((((((..((.(((.(((((((((((.(((............)))..))))))))))).)))))....)))))))) )).))...........
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR
