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Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
B
A
D
A
V
G
G
OOD
mir-130b
C
A
C
U
G
G
C
-
A
G
G
C
C
U
G
C
C
-
C
G
A
C
A
C
U
C
U
U
U
C
C
C
U
G
U
-
U
G
C
A
C
U
A
C
U
A
-
U
A
G
G
C
C
G
C
U
G
G
G
A
mir-181a-1
G
U
U
U
U
G
A
G
G
U
U
G
C
U
U
C
A
G
U
G
A
A
C
A
U
U
C
A
A
C
G
C
U
G
-
U
C
G
G
U
G
A
G
U
U
U
-
G
G
A
A
U
U
A
A
A
A
U
C
A
mir-181a-2
G
C
C
U
U
C
A
G
A
G
G
A
C
U
C
C
A
A
G
G
A
A
C
A
U
U
C
A
A
C
G
C
U
G
-
U
C
G
G
U
-
G
A
G
U
U
-
U
G
G
G
A
U
U
U
G
A
A
A
A
mir-181b-1
U
U
U
U
U
U
A
A
A
A
G
G
U
C
A
C
A
A
U
C
A
A
C
A
U
U
C
A
U
U
G
C
U
G
-
U
C
G
G
U
G
G
G
U
U
-
-
G
A
A
C
U
G
U
G
U
G
G
A
C
mir-181b-2
A
A
A
C
A
C
U
G
A
U
G
G
C
U
G
C
A
C
U
C
A
A
C
A
U
U
C
A
U
U
G
C
U
G
-
U
C
G
G
U
G
-
G
G
U
U
-
U
G
A
-
G
U
C
U
G
A
A
U
C
mir-181c
A
U
U
U
G
C
C
A
A
G
G
G
U
U
U
G
G
G
G
G
A
A
C
A
U
U
C
A
A
C
C
-
U
G
-
U
C
G
G
U
G
A
G
U
U
U
-
G
G
G
C
A
G
C
U
C
A
G
G
C
mir-181d
C
C
A
C
A
G
C
C
G
A
G
G
U
C
A
C
A
A
U
C
A
A
C
A
U
U
C
A
U
U
G
U
U
G
-
U
C
G
G
U
G
G
G
U
U
G
U
G
A
G
G
A
C
U
G
A
G
G
C
C
mir-30a
U
G
C
U
G
U
U
G
A
C
A
G
U
G
A
G
C
G
A
C
U
G
U
A
A
A
C
A
U
C
C
U
C
G
A
-
C
U
G
G
A
A
G
C
U
G
U
G
A
A
G
C
C
A
-
C
A
G
A
U
mir-30b
U
U
A
A
A
C
C
A
A
G
U
U
U
C
A
G
U
U
C
A
U
G
U
A
A
A
C
A
U
C
C
-
U
A
-
-
C
A
C
U
C
A
G
C
U
-
G
U
A
A
U
A
C
A
U
G
-
G
A
U
mir-30c-1
U
A
U
A
A
C
C
A
U
G
C
U
G
U
A
G
U
G
U
G
U
G
U
A
A
A
C
A
U
C
C
U
A
C
A
-
C
U
C
U
C
A
G
C
U
G
-
-
U
G
A
G
C
U
C
A
A
G
-
G
mir-30c-2
G
A
G
C
A
C
U
G
A
G
C
G
A
C
A
G
A
U
A
C
U
G
U
A
A
A
C
A
U
C
C
U
A
C
A
-
C
U
C
U
C
A
G
C
U
G
U
G
G
A
A
A
-
G
U
A
A
G
-
A
mir-30d
U
U
G
U
U
C
A
G
A
A
A
G
U
C
U
G
U
U
G
U
U
G
U
A
A
A
C
A
U
C
C
C
C
G
A
-
C
U
G
G
A
A
G
C
U
G
-
U
A
A
G
A
C
A
-
C
A
G
C
U
mir-30e
U
U
C
U
G
G
G
C
A
G
U
C
U
U
U
G
C
U
A
C
U
G
U
A
A
A
C
A
U
C
C
U
U
G
A
-
C
U
G
G
A
A
G
C
U
G
U
A
A
G
G
U
G
U
U
C
A
G
A
G
mir-500
U
G
U
G
U
U
C
U
G
C
U
C
C
C
C
C
U
C
U
C
-
U
A
A
U
C
C
U
U
G
C
U
A
C
C
U
G
G
G
U
-
G
A
G
A
G
U
G
C
U
G
U
C
U
G
A
A
U
G
C
CONS STRUCTURE
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mir-130b
A
G
C
A
G
U
G
C
A
A
U
G
A
U
G
A
A
A
G
G
G
C
A
U
C
G
-
G
U
C
A
G
G
U
C
C
A
G
C
C
U
G
C
U
A
C
-
mir-181a-1
A
-
A
A
C
-
C
A
U
C
G
A
C
C
G
U
U
G
A
U
U
G
U
A
-
C
C
C
U
A
U
G
G
C
U
-
A
A
C
C
A
U
C
A
U
C
U
mir-181a-2
A
-
A
C
-
-
C
A
C
U
G
A
C
C
G
U
U
G
A
C
U
G
U
A
C
C
U
U
G
G
G
G
U
C
C
U
U
A
C
A
G
A
C
G
A
C
A
mir-181b-1
A
-
A
G
C
U
C
A
C
U
G
A
A
C
A
A
U
G
A
A
U
G
C
A
-
A
C
-
U
G
U
G
G
C
C
C
C
G
C
U
U
U
U
U
G
C
U
mir-181b-2
A
-
A
C
-
U
C
A
C
U
G
A
U
C
A
A
U
G
A
A
U
G
C
A
A
A
C
U
G
C
G
G
A
C
C
A
A
A
C
A
A
C
C
C
A
A
A
mir-181c
A
-
A
A
-
C
C
A
U
C
G
A
C
C
G
U
U
G
A
G
U
G
G
A
C
C
C
U
G
A
G
G
C
C
U
G
G
A
A
U
U
G
C
C
A
U
-
mir-181d
A
-
G
A
C
C
C
A
C
C
G
G
G
G
G
A
U
G
A
A
U
G
U
C
-
A
C
-
U
G
U
G
G
C
U
G
G
-
-
G
C
C
A
G
A
C
A
mir-30a
G
-
G
G
C
U
U
U
C
A
G
U
C
G
G
A
U
G
U
U
U
G
C
A
G
C
U
G
C
C
U
A
C
U
-
-
G
C
C
-
U
C
G
G
A
C
U
mir-30b
U
-
G
G
C
U
G
G
G
A
G
G
U
G
G
A
U
G
U
U
U
A
C
U
U
C
A
G
C
U
G
A
C
U
U
G
G
A
A
U
G
U
C
A
A
C
C
mir-30c-1
U
-
G
G
C
U
G
G
G
A
G
A
G
G
G
U
U
G
U
U
U
A
C
U
C
C
U
U
C
U
G
C
C
A
U
G
G
A
A
-
A
A
C
A
U
C
A
mir-30c-2
A
-
A
G
C
U
G
G
G
A
G
A
A
G
G
C
U
G
U
U
U
A
C
U
C
U
U
U
C
U
G
C
C
U
U
G
G
A
A
-
G
U
C
A
A
C
-
mir-30d
A
-
A
G
C
U
U
U
C
A
G
U
C
A
G
A
U
G
U
U
U
G
C
U
G
C
U
A
C
C
G
G
C
U
A
-
U
U
C
A
-
C
A
G
A
C
A
mir-30e
G
-
A
G
C
U
U
U
C
A
G
U
C
G
G
A
U
G
U
U
U
A
C
A
G
C
G
G
C
-
-
A
G
G
C
U
G
C
C
-
A
C
G
G
U
C
-
mir-500
A
-
A
U
G
-
C
A
C
C
U
G
G
G
C
A
A
G
G
A
U
U
C
U
G
A
G
A
G
C
G
A
G
A
G
C
U
U
C
-
A
U
C
U
U
C
-
CONS STRUCTURE
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Consensus
CPU time:
0.00
Average sequence ID:
0.38132132761
Average free energy:
-18.4564285714
Average covariation:
0.355720172684
Average basepair probability:
0.720191324018
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
UWYUDSMRAGKGYYWSWKUSWRYAWWCAUCSYUGAUCKSUVRGYUKuKRRGWCWUMAGMMAgRRCUSACMGRCSGWUGWWURCWSMYKBC KRSYYSGAMWWYCRWCW
............((((((.((((((((((((..(..(((((((((.................))))))))).))))))))))))).)))) ))...............
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR
