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Webserver for Aligning structural RNAs
Results
You can download the results in the following formats:
fasta
clustal
stockholm
col
The consensus is based on:
CMfinder
FoldalignM
LaRA
MASTR
RNAalifold
RNAforester
RNASampler
T-coffee consensus alignment
B
A
D
A
V
G
G
OOD
hsa-mir-143
C
G
C
C
-
-
C
U
G
U
C
U
C
C
C
-
A
-
G
C
-
C
U
G
-
A
G
G
U
G
C
A
G
U
G
-
-
C
U
G
C
A
U
C
U
C
U
G
G
-
U
C
A
G
U
U
G
G
G
A
hsa-mir-297
C
A
U
A
C
U
U
U
A
U
G
A
A
C
A
U
A
U
G
U
A
U
G
U
-
A
U
G
U
G
U
G
C
A
U
-
-
-
G
U
G
C
A
U
G
U
A
U
G
-
U
G
U
A
-
U
A
U
A
C
hsa-mir-302a
C
C
A
A
G
A
C
U
G
G
G
C
U
C
C
C
-
C
-
A
C
C
A
C
-
U
U
A
A
A
C
G
U
G
G
-
-
A
U
G
U
A
C
U
U
G
C
U
U
-
U
G
A
A
A
C
U
A
A
A
hsa-mir-302b
U
G
U
U
G
G
G
-
-
U
G
G
G
C
U
C
C
C
-
U
U
C
A
A
-
C
U
U
U
A
A
C
A
U
G
-
-
G
A
A
G
U
G
C
U
U
U
C
U
G
U
G
A
C
U
U
-
U
A
A
hsa-mir-302c
U
U
U
G
A
A
G
-
-
G
G
A
U
C
C
C
-
C
-
U
-
U
U
G
-
C
U
U
U
A
A
C
A
U
G
-
-
G
G
G
G
U
A
C
C
U
G
C
U
G
U
G
U
G
A
A
A
C
A
A
hsa-mir-302d
U
C
U
G
-
-
U
U
A
A
G
G
G
G
C
C
C
C
C
U
C
U
A
C
-
U
U
U
A
A
C
A
U
G
G
-
-
A
G
G
C
A
C
U
U
G
C
U
-
G
U
G
A
C
A
U
G
A
C
A
hsa-mir-372
A
U
G
G
A
G
C
U
G
C
U
C
A
C
C
C
U
G
-
U
G
G
G
C
-
C
U
C
A
A
A
U
G
U
-
-
-
G
G
A
G
C
A
C
U
A
U
U
C
U
G
A
U
G
U
C
C
A
A
G
hsa-mir-374a
A
A
G
A
A
A
U
U
U
U
A
C
A
U
C
-
G
G
-
C
C
A
U
U
-
A
U
-
A
A
U
A
C
A
A
-
-
C
C
U
G
A
U
A
A
G
U
G
U
-
U
-
A
-
-
-
-
-
-
U
hsa-mir-374b
A
A
G
A
A
A
-
U
-
C
C
U
A
C
-
-
U
C
-
G
G
A
U
G
-
G
A
U
A
U
A
A
U
A
C
-
-
A
A
C
C
U
G
C
U
A
A
G
U
G
U
-
C
C
-
U
-
-
A
G
hsa-mir-378
G
G
U
G
A
C
A
G
A
G
C
C
A
C
C
C
A
G
-
G
G
C
U
C
-
C
U
-
G
A
C
U
C
C
A
-
-
G
G
U
C
C
U
G
U
G
U
-
G
U
U
-
A
C
C
U
A
G
A
A
hsa-mir-421
C
C
U
A
A
U
C
C
G
G
U
G
C
A
C
-
A
U
U
G
U
A
G
G
-
C
C
U
C
A
U
U
A
A
A
-
-
U
G
U
U
U
G
U
U
G
A
A
U
G
A
A
A
A
A
A
U
G
A
A
hsa-mir-544
C
U
A
A
G
A
U
U
U
U
C
A
U
C
A
C
C
U
A
G
G
G
A
U
-
C
U
U
G
U
U
A
A
A
A
A
-
-
-
G
C
A
G
A
U
U
C
U
G
A
U
U
C
A
G
-
G
G
A
C
hsa-mir-553
-
-
-
-
-
-
-
-
-
A
C
A
U
U
C
-
U
U
C
A
A
U
U
U
-
U
A
U
U
U
U
A
A
A
A
C
G
G
U
G
A
G
A
U
U
U
U
G
-
-
U
U
U
U
G
-
-
U
C
U
hsa-mir-563
-
U
U
-
-
-
U
U
U
A
C
A
G
G
A
A
G
C
A
A
A
-
G
-
-
-
-
-
A
A
G
U
G
U
G
-
-
U
U
G
C
C
-
C
U
C
U
A
G
G
A
A
A
U
G
U
G
U
G
U
hsa-mir-600
G
U
C
A
C
G
U
G
C
U
G
U
G
G
C
U
C
C
A
G
C
U
U
C
A
U
A
G
G
A
A
G
G
C
U
-
-
C
U
U
G
U
C
U
G
U
C
A
G
G
C
A
G
U
G
G
A
G
U
U
hsa-mir-616
U
U
A
C
C
U
U
A
G
G
U
A
A
U
U
C
C
U
-
C
C
A
C
U
-
C
A
A
A
A
C
C
C
U
U
-
-
C
A
G
U
G
A
C
U
U
C
C
A
-
U
G
A
C
A
U
G
A
A
A
hsa-mir-633
C
C
U
C
U
-
C
U
U
A
G
C
C
U
C
U
G
U
U
U
C
U
U
U
-
A
U
U
G
C
G
G
U
A
G
-
-
A
U
A
C
U
A
U
U
A
A
C
C
-
U
A
A
A
A
U
G
A
G
A
hsa-mir-659
A
C
C
G
A
C
C
C
U
C
G
A
U
U
U
G
G
U
-
U
C
A
G
G
-
A
C
C
U
U
C
C
C
U
G
-
-
A
A
C
C
A
A
G
G
A
A
G
A
G
U
C
A
C
A
-
-
G
-
U
hsa-mir-802
C
U
C
G
U
-
U
C
U
G
U
U
A
U
U
-
U
G
-
C
A
G
U
C
-
A
G
U
A
A
C
A
A
A
G
-
-
A
U
U
C
A
U
C
C
U
U
G
U
G
U
C
C
A
U
C
A
U
G
C
hsa-mir-873
-
G
A
A
U
A
A
G
U
U
U
G
U
G
-
-
U
G
C
A
-
U
U
U
-
G
C
A
G
G
A
A
C
U
U
-
-
G
U
G
A
G
U
C
U
C
C
U
A
U
U
G
A
A
A
A
U
G
A
A
CONS STRUCTURE
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hsa-mir-143
G
U
C
U
G
A
G
A
U
G
A
A
G
C
-
-
A
C
U
G
U
A
G
C
-
-
-
-
-
-
-
-
-
-
-
-
-
-
U
C
A
G
G
A
-
-
A
G
A
G
A
G
A
A
G
U
U
G
U
U
hsa-mir-297
A
U
A
U
A
U
A
U
G
U
A
U
U
A
-
-
U
G
U
A
C
U
C
A
-
U
A
U
A
U
C
A
A
G
-
-
-
-
-
-
-
-
-
G
-
A
G
A
U
U
U
C
A
U
U
-
-
-
-
-
hsa-mir-302a
G
A
A
G
U
A
A
G
U
G
C
U
U
C
-
-
C
A
U
G
U
U
U
-
U
G
G
U
G
A
-
-
U
G
-
-
-
-
-
-
-
-
-
-
-
-
G
U
A
A
G
U
C
U
U
-
-
-
-
-
hsa-mir-302b
A
A
G
U
A
A
G
U
G
C
U
U
C
C
-
-
A
U
G
U
U
U
U
A
-
G
U
A
G
-
-
-
-
-
-
-
-
-
G
-
-
-
-
A
G
U
G
A
A
U
C
C
A
A
U
-
-
-
-
-
hsa-mir-302c
A
A
G
U
A
A
G
U
G
C
U
U
C
C
-
-
A
U
G
U
U
U
C
A
-
G
U
G
G
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A
G
G
U
G
U
C
U
C
C
A
A
-
-
-
-
-
hsa-mir-302d
A
A
A
A
U
A
A
G
U
G
C
U
U
C
-
-
C
A
U
G
U
U
U
G
-
A
G
U
G
-
-
-
-
-
-
-
-
-
-
-
-
-
U
G
-
-
G
U
G
G
U
U
C
C
U
-
-
-
-
-
hsa-mir-372
U
G
G
A
A
A
G
U
G
C
U
G
C
G
-
-
A
C
A
U
U
U
G
A
G
C
G
U
C
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A
C
C
G
G
U
G
A
C
G
-
-
-
-
-
hsa-mir-374a
A
G
C
A
C
U
U
A
U
C
A
G
A
U
-
-
U
G
U
A
U
U
-
G
-
U
A
A
U
-
-
-
-
-
-
-
-
-
U
G
U
C
U
G
-
-
-
U
G
U
A
U
A
U
G
-
-
C
C
U
hsa-mir-374b
C
A
C
U
U
A
G
C
A
G
G
U
U
G
-
-
U
A
U
U
A
U
C
A
-
U
U
G
U
C
-
-
C
G
-
-
-
-
-
-
-
-
U
G
-
-
U
C
U
A
U
G
G
C
U
-
-
-
-
C
hsa-mir-378
A
U
A
G
C
A
C
U
G
G
A
C
U
U
-
-
G
G
A
G
U
C
-
A
-
G
A
A
G
G
-
-
-
-
-
-
-
-
C
C
U
G
A
-
-
-
-
-
G
U
G
G
A
G
-
U
-
-
-
-
hsa-mir-421
U
C
A
U
C
A
A
C
A
G
A
C
A
U
-
-
U
A
A
U
U
G
G
G
-
-
-
-
C
-
-
-
-
-
-
-
-
-
G
C
C
U
G
C
-
U
C
U
G
U
G
A
U
C
U
-
-
-
-
-
hsa-mir-544
C
A
A
G
A
U
U
C
U
G
C
A
-
-
U
U
U
U
U
A
G
C
A
A
-
G
U
U
C
-
-
-
-
-
-
-
-
-
-
-
U
C
A
-
-
-
A
G
U
G
A
U
G
C
U
-
-
-
-
-
hsa-mir-553
G
A
G
A
A
A
A
U
C
U
C
G
C
U
G
U
U
U
U
A
G
A
C
U
-
G
A
G
G
-
-
-
-
-
-
-
-
-
-
-
C
-
A
G
U
G
U
G
U
U
A
U
G
A
U
-
-
-
-
-
hsa-mir-563
U
G
C
U
C
U
G
A
U
G
U
A
A
U
-
-
U
A
G
G
U
U
G
A
C
A
U
A
-
C
-
-
G
U
U
U
C
C
C
U
G
G
U
A
-
G
C
C
A
A
U
A
U
-
-
-
-
-
-
-
hsa-mir-600
A
C
U
U
A
C
A
G
A
C
A
A
G
A
-
-
G
C
C
U
U
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
G
C
U
C
A
G
G
C
C
A
G
C
C
C
-
U
-
-
-
G
C
hsa-mir-616
U
A
G
G
A
A
G
U
C
A
U
U
G
G
-
-
A
G
G
G
U
U
-
U
-
G
A
G
C
A
-
-
G
A
G
G
A
-
-
-
-
-
-
-
-
-
-
A
-
U
G
A
C
C
U
-
G
-
-
-
hsa-mir-633
A
G
G
C
U
A
A
U
A
G
U
A
U
C
-
-
U
A
C
C
A
C
A
A
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
U
A
A
A
-
A
-
U
U
G
U
U
G
U
G
-
-
-
A
G
hsa-mir-659
C
U
C
U
U
C
C
U
U
G
G
U
U
C
-
-
A
G
G
G
A
G
G
G
-
U
C
C
C
C
-
-
A
A
C
A
A
-
-
-
-
-
-
-
-
-
-
-
-
U
G
U
C
C
U
-
-
-
-
-
hsa-mir-802
A
A
C
A
A
G
G
A
-
G
A
A
U
C
-
-
U
U
U
G
U
C
A
C
U
U
A
G
U
-
-
-
G
U
-
-
-
-
-
-
-
-
-
A
-
A
U
U
A
A
U
A
G
C
U
-
-
-
-
-
hsa-mir-873
-
C
A
G
G
A
G
A
C
U
G
A
U
G
-
-
A
G
U
U
C
C
-
-
-
C
G
G
G
A
-
-
A
C
-
-
-
-
-
-
-
-
A
C
-
-
-
C
C
A
C
A
A
A
U
-
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CONS STRUCTURE
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hsa-mir-143
C
-
-
-
U
G
C
A
G
-
-
-
-
-
-
C
C
hsa-mir-297
-
-
-
-
-
-
-
-
-
-
-
-
U
C
U
A
U
hsa-mir-302a
-
-
-
-
C
C
U
U
U
-
-
-
U
A
-
C
A
hsa-mir-302b
-
-
-
-
-
-
U
U
A
-
-
C
U
U
C
U
C
hsa-mir-302c
-
-
-
-
G
C
C
A
G
-
-
C
A
C
A
C
C
hsa-mir-302d
A
-
-
-
C
C
U
A
A
-
-
-
-
U
C
A
G
hsa-mir-372
-
-
-
-
-
C
C
C
A
-
-
-
U
A
U
C
A
hsa-mir-374a
G
U
C
-
U
C
U
C
U
-
-
-
U
C
C
U
G
hsa-mir-374b
U
-
-
-
C
G
U
C
U
-
-
A
C
C
A
G
A
hsa-mir-378
C
-
-
-
-
-
-
A
C
-
C
U
U
C
C
C
C
hsa-mir-421
-
-
C
C
-
-
A
-
-
-
-
-
-
-
U
G
G
hsa-mir-544
-
-
-
-
-
-
A
A
U
A
-
-
-
C
C
G
C
hsa-mir-553
A
-
-
-
G
A
G
A
G
C
A
C
U
A
A
A
C
hsa-mir-563
-
-
-
-
-
-
A
A
G
-
-
-
-
G
A
A
U
hsa-mir-600
-
-
C
C
-
-
-
-
-
-
-
-
C
U
G
C
C
hsa-mir-616
U
-
-
-
U
U
U
A
A
-
-
-
-
-
-
-
A
hsa-mir-633
-
-
G
A
U
-
A
-
-
-
-
-
A
A
A
A
A
hsa-mir-659
C
-
-
-
A
U
G
G
U
-
-
-
-
C
C
U
U
hsa-mir-802
-
-
-
-
-
-
G
G
-
-
-
A
C
C
U
U
G
hsa-mir-873
-
-
-
-
-
C
U
U
C
C
U
A
C
U
C
A
U
CONS STRUCTURE
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Consensus
CPU time:
0.00
Average sequence ID:
0.224725859436
Average free energy:
-19.726
Average covariation:
0.838296398892
Average basepair probability:
0.799869747939
Canonical basepairs:
NA
Sequence and structure consensus for Consensus
CYURAAYUKKSMACCCCBMKSWKBaMUURAMAMWRmgVKGSAAYUKYKKGURAMRURRAAAAVKAARUKSAWUCkuWRKKUYSRbKDKSm cargbdmcbsysWRgRSYDKKUVMUukssycusmYCUADmhmYCMMC
............................(((((((..((((((((((((............)))))))))))))..))))))........ ...............................................
The alignment colored using colorrna.pl of the Vienna package
Cluster tree of the methods
Table
WAR