Genomic screen for structured RNAs in Drosophila melanogaster and related insects
Supplemental Data of
Identification and characterization of novel conserved RNA structures in Drosophila
Kirsch R, Seemann SE, Ruzzo WL, Cohen SM, Stadler PF, Gorodkin J*
BMC Genomics. 2018 Dec 11;19(1):899
[ PubMed | Paper | Dataresource ]
| DM.tab.gz | List of all individual CRSs | |
| DM-stk.tar.gz | Alignments for all CRS motifs in Stockholm format | |
| DC.tab.gz | List of all merged CRS regions | |
| DC-tiling.tab.gz | Expression of CRS regions in tiling array experiments [Graveley et al., Nature, 2011] | |
| tiling_v32.tab.gz | Original file with tiling array data [Graveley et al., Nature, 2011] downloaded from modMine (data there not available anymore) | |
| tiling_v32_dm6.bed.gz | Bed file used in the CMfinder screen, with all tiling array transcript regions, one entry per transcript region and modENCODE experiment, i.e. entries for stage, strain and compartment are merged |