Foldalign: RNA Structural Alignment
Foldalign webserver parameters
- Alignment type: Local or Global. Local makes local alignments. Global makes global alignments
- Two sequences in fasta format. Maximum sequence length 30,000 nt for local alignment, 1,000 nt for global alignment
- E-mail: Your email. You will get a mail when the job is done
- Alignment id: You can add information about your sequences here. This information will be included in the output file, and on the result page
- Local alignment maximum motif length (lambda): This sets the maximum length of the alignments that can be found. Maximum value: 1,000 nt.
Citing
Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment
Sundfeld D, Havgaard JH, de Melo AC, Gorodkin J*
Bioinformatics. 2016 Apr 15;32(8):1238-40. Epub 2015 Dec 24
[ PubMed | Paper | Webserver | Software ]
The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search
Havgaard JH, Lyngso RB, Gorodkin J*
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W650-3
[ PubMed | Paper | Webserver | Software | Sup ]
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