The fasta files for the Duda clusters: duda_fasta.zip
The cluster tree in newick format (can be viewed with njplot): Cluster Tree
The results from running WAR on selected Duda clusters are available here:
Cluster 6
Cluster 8
Cluster 12
Cluster 15
Cluster 18
Cluster 21
Cluster 28
Cluster 29
Cluster 31
Cluster 34
Cluster 35
Cluster 36
Cluster 38
Cluster 41
Cluster 44
Cluster 60