Cow genome map
| Conread name: | Emb1-C0005185_L09 |
| Conread position: | 3-339 |
| Cow position: | chr5:39246164-39245813 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 98, 221 |
| Conread position: | 6-317 |
| Cow position: | chr5:44460133-44460458 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 217 |
| Conread position: | 6-317 |
| Cow position: | chr5:45181494-45181169 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 95, 217 |
| Conread position: | 6-354 |
| Cow position: | chr5:35300749-35301116 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 95, 77 |
| Conread position: | 6-354 |
| Cow position: | chr5:38073682-38074049 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 95, 217 |
| Conread position: | 9-345 |
| Cow position: | chr5:51770290-51769950 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 101, 56 |
| Conread position: | 9-347 |
| Cow position: | chr5:4385896-4386251 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 9-347 |
| Cow position: | chr5:41956708-41956359 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 143, 36 |
| Conread position: | 11-339 |
| Cow position: | chr5:59282975-59283319 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 123, 98 |
| Conread position: | 11-340 |
| Cow position: | chr5:4069876-4070212 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 67 |
| Conread position: | 11-344 |
| Cow position: | chr5:73488901-73488552 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 90, 102 |
| Conread position: | 11-345 |
| Cow position: | chr5:57481883-57481530 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 90, 200 |
| Conread position: | 11-347 |
| Cow position: | chr5:10919482-10919831 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 90, 198 |
| Conread position: | 11-347 |
| Cow position: | chr5:34697259-34697612 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 237 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 90, 200 |
| Conread position: | 11-347 |
| Cow position: | chr5:46737918-46737566 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 90, 198 |
| Conread position: | 11-347 |
| Cow position: | chr5:48808083-48807728 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 11-347 |
| Cow position: | chr5:55628647-55629002 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 11-347 |
| Cow position: | chr5:64781360-64781005 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 11-354 |
| Cow position: | chr5:30579985-30580357 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 12-347 |
| Cow position: | chr5:41528117-41527785 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 89, 106 |
| Conread position: | 14-235 |
| Cow position: | chr5:32308735-32308504 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 14-347 |
| Cow position: | chr5:54791973-54791622 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 87, 29 |
| Conread position: | 17-347 |
| Cow position: | chr5:6154238-6153892 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 117, 202 |
| Conread position: | 19-285 |
| Cow position: | chr5:53703498-53703224 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 83, 193 |
| Conread position: | 24-328 |
| Cow position: | chr5:52613278-52612968 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 76, 93 |
| Conread position: | 25-345 |
| Cow position: | chr5:1341362-1341024 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 76, 185 |
| Conread position: | 25-347 |
| Cow position: | chr5:3786589-3786937 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 76, 321 |
| Conread position: | 26-259 |
| Cow position: | chr5:51313524-51313277 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 75, 135 |
| Conread position: | 43-347 |
| Cow position: | chr5:41929544-41929236 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 63 |
Show alignments to all cow chromosomes.