Cow genome map
| Conread name: | Emb1-C0005185_L09 |
| Conread position: | 3-267 |
| Cow position: | chrX:13082384-13082114 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 98, 116 |
| Conread position: | 3-347 |
| Cow position: | chrX:5304777-5305142 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 3-347 |
| Cow position: | chrX:24195769-24195425 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 95, 32 |
| Conread position: | 3-347 |
| Cow position: | chrX:44388394-44388748 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 98, 27 |
| Conread position: | 3-348 |
| Cow position: | chrX:18767797-18768156 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 99, 170 |
| Conread position: | 5-350 |
| Cow position: | chrX:21269437-21269066 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 6-347 |
| Cow position: | chrX:30183291-30182953 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 95, 67 |
| Conread position: | 6-347 |
| Cow position: | chrX:41102839-41102480 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 98, 215 |
| Conread position: | 6-349 |
| Cow position: | chrX:34345861-34346213 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 93, 43 |
| Conread position: | 6-354 |
| Cow position: | chrX:979222-979589 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 95, 217 |
| Conread position: | 6-354 |
| Cow position: | chrX:35530489-35530846 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 96, 276 |
| Conread position: | 7-322 |
| Cow position: | chrX:25612686-25613009 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 95, 123 |
| Conread position: | 8-344 |
| Cow position: | chrX:17613394-17613041 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 115, 93 |
| Conread position: | 9-345 |
| Cow position: | chrX:29996568-29996225 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 9-349 |
| Cow position: | chrX:1391570-1391929 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 90, 255 |
| Conread position: | 11-207 |
| Cow position: | chrX:9093190-9093395 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 11-215 |
| Cow position: | chrX:15599597-15599811 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 90, 200 |
| Conread position: | 11-347 |
| Cow position: | chrX:2481998-2481645 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 11-347 |
| Cow position: | chrX:13412500-13412147 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 11-347 |
| Cow position: | chrX:15126604-15126240 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 11-347 |
| Cow position: | chrX:18553062-18553416 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 90, 40 |
| Conread position: | 11-347 |
| Cow position: | chrX:22488777-22489130 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 90, 207 |
| Conread position: | 11-347 |
| Cow position: | chrX:23277658-23278010 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 11-347 |
| Cow position: | chrX:23389885-23389532 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 90, 200 |
| Conread position: | 11-347 |
| Cow position: | chrX:23455385-23455031 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 90, 200 |
| Conread position: | 11-347 |
| Cow position: | chrX:26528610-26528961 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 91, 32 |
| Conread position: | 11-347 |
| Cow position: | chrX:29852933-29852582 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 11-347 |
| Cow position: | chrX:38148225-38148582 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 91, 48 |
| Conread position: | 11-348 |
| Cow position: | chrX:18953049-18952695 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 90, 289 |
| Conread position: | 12-307 |
| Cow position: | chrX:16015805-16015500 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 89, 220 |
| Conread position: | 12-347 |
| Cow position: | chrX:17491330-17490985 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 90, 185 |
| Conread position: | 13-349 |
| Cow position: | chrX:13182483-13182139 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 34, 141 |
| Conread position: | 14-347 |
| Cow position: | chrX:12315121-12314765 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 17-347 |
| Cow position: | chrX:27315913-27316262 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 19-346 |
| Cow position: | chrX:6014283-6013965 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 82, 177 |
| Conread position: | 20-236 |
| Cow position: | chrX:16699944-16700166 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 81, 5 |
| Conread position: | 20-306 |
| Cow position: | chrX:39563294-39562994 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 82, 276 |
| Conread position: | 26-214 |
| Cow position: | chrX:20720642-20720844 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.