Cow genome map
Conread name: | Emb1-C0005194_P05 |
Conread position: | 1-418 |
Cow position: | chr1:69536631-69537048 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 117 |
Conread position: | 1-422 |
Cow position: | chr1:33711789-33712216 (view UCSC Genome Browser custom track) |
Alignm length: | 431 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 33 |
Conread position: | 2-420 |
Cow position: | chr1:57656289-57656695 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 17 |
Conread position: | 2-422 |
Cow position: | chr1:62244916-62244495 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 16 |
Conread position: | 2-422 |
Cow position: | chr1:89770953-89770532 (view UCSC Genome Browser custom track) |
Alignm length: | 426 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 93 |
Conread position: | 2-422 |
Cow position: | chr1:97123562-97123964 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 67 |
Conread position: | 4-242 |
Cow position: | chr1:55323788-55323550 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 179 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 109, 63 |
Conread position: | 4-422 |
Cow position: | chr1:52359547-52359125 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 205 |
Conread position: | 5-292 |
Cow position: | chr1:5501707-5501996 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 219 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 202 |
Conread position: | 5-309 |
Cow position: | chr1:13253699-13253400 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 296, 81 |
Conread position: | 5-334 |
Cow position: | chr1:40953443-40953762 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 67 |
Conread position: | 5-376 |
Cow position: | chr1:69922731-69922361 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 198 |
Conread position: | 5-410 |
Cow position: | chr1:25549795-25550197 (view UCSC Genome Browser custom track) |
Alignm length: | 411 |
Alignm identity: | 301 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 242 |
Conread position: | 5-413 |
Cow position: | chr1:33550655-33551062 (view UCSC Genome Browser custom track) |
Alignm length: | 414 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 180 |
Conread position: | 5-415 |
Cow position: | chr1:69402724-69403134 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 202 |
Conread position: | 5-420 |
Cow position: | chr1:56194199-56193781 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 150 |
Conread position: | 5-420 |
Cow position: | chr1:63606051-63605631 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 203 |
Conread position: | 5-421 |
Cow position: | chr1:18244657-18244233 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 341 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 241 |
Conread position: | 5-421 |
Cow position: | chr1:22000225-21999806 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 203 |
Conread position: | 5-421 |
Cow position: | chr1:87244531-87244962 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 304, 104 |
Conread position: | 5-422 |
Cow position: | chr1:8824794-8825203 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 309 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 372, 195 |
Conread position: | 5-422 |
Cow position: | chr1:25180299-25179878 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 24 |
Conread position: | 5-422 |
Cow position: | chr1:28872809-28873226 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 202 |
Conread position: | 5-422 |
Cow position: | chr1:42736189-42736605 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 202 |
Conread position: | 5-422 |
Cow position: | chr1:49974456-49974038 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 20 |
Conread position: | 5-422 |
Cow position: | chr1:52233367-52232963 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 372, 34 |
Conread position: | 5-422 |
Cow position: | chr1:57567682-57568103 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 202 |
Conread position: | 5-422 |
Cow position: | chr1:62854095-62853693 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 377, 110 |
Conread position: | 5-422 |
Cow position: | chr1:68607816-68607391 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 202 |
Conread position: | 5-422 |
Cow position: | chr1:72187139-72186720 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 105, 200 |
Conread position: | 5-422 |
Cow position: | chr1:72656715-72657139 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 103, 29 |
Conread position: | 5-422 |
Cow position: | chr1:76545808-76545387 (view UCSC Genome Browser custom track) |
Alignm length: | 425 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 194, 199 |
Conread position: | 5-422 |
Cow position: | chr1:76623213-76622805 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 372, 195 |
Conread position: | 5-422 |
Cow position: | chr1:79336072-79335652 (view UCSC Genome Browser custom track) |
Alignm length: | 423 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 201 |
Conread position: | 5-422 |
Cow position: | chr1:79457235-79456820 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 168 |
Conread position: | 5-422 |
Cow position: | chr1:88130490-88130923 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 198 |
Conread position: | 5-422 |
Cow position: | chr1:88635110-88635524 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 325 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 372, 29 |
Conread position: | 5-422 |
Cow position: | chr1:89899969-89899551 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 64 |
Conread position: | 5-422 |
Cow position: | chr1:93854252-93854673 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 202 |
Conread position: | 5-422 |
Cow position: | chr1:100597650-100597221 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 202 |
Conread position: | 5-422 |
Cow position: | chr1:101858248-101857833 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 77 |
Conread position: | 6-422 |
Cow position: | chr1:87207679-87207275 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 104 |
Conread position: | 8-422 |
Cow position: | chr1:76752915-76752501 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 314 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 187, 196 |
Conread position: | 8-422 |
Cow position: | chr1:89740509-89740111 (view UCSC Genome Browser custom track) |
Alignm length: | 418 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 220 |
Conread position: | 9-355 |
Cow position: | chr1:102548971-102549311 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 36, 16 |
Conread position: | 9-370 |
Cow position: | chr1:62806070-62805707 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 194 |
Conread position: | 9-422 |
Cow position: | chr1:86699482-86699065 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 129 |
Conread position: | 9-422 |
Cow position: | chr1:102435292-102434886 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 312 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 195 |
Conread position: | 22-422 |
Cow position: | chr1:40307816-40308215 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 308 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 223, 302 |
Conread position: | 29-269 |
Cow position: | chr1:85881497-85881741 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 175 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 24, 18 |
Conread position: | 62-422 |
Cow position: | chr1:72080561-72080931 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 185 |
Conread position: | 71-315 |
Cow position: | chr1:21541359-21541600 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 170 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 37, 21 |
Conread position: | 102-301 |
Cow position: | chr1:79885000-79884800 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 144 |
Alignm E-value: | 9e-29 |
Alignm gaps (pig, cow): | 22, 144 |
Conread position: | 102-420 |
Cow position: | chr1:99910783-99911109 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 165, 142 |
Conread position: | 103-422 |
Cow position: | chr1:11863403-11863092 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 274, 75 |
Conread position: | 103-422 |
Cow position: | chr1:23050673-23050989 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 219 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 238, 116 |
Conread position: | 109-422 |
Cow position: | chr1:12062355-12062044 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 18 |
Conread position: | 128-422 |
Cow position: | chr1:48245669-48245964 (view UCSC Genome Browser custom track) |
Alignm length: | 298 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 76 |
Show alignments to all cow chromosomes.