Cow genome map

Conread name: Emb1-C0005194_P05

Conread position: 1-418
Cow position: chr1:69536631-69537048 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 117

Conread position: 1-422
Cow position: chr1:33711789-33712216 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 33

Conread position: 2-420
Cow position: chr1:57656289-57656695 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 17

Conread position: 2-422
Cow position: chr1:62244916-62244495 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 16

Conread position: 2-422
Cow position: chr1:89770953-89770532 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 93

Conread position: 2-422
Cow position: chr1:97123562-97123964 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 67

Conread position: 4-242
Cow position: chr1:55323788-55323550 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 109, 63

Conread position: 4-422
Cow position: chr1:52359547-52359125 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 205

Conread position: 5-292
Cow position: chr1:5501707-5501996 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 202

Conread position: 5-309
Cow position: chr1:13253699-13253400 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 81

Conread position: 5-334
Cow position: chr1:40953443-40953762 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 67

Conread position: 5-376
Cow position: chr1:69922731-69922361 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 198

Conread position: 5-410
Cow position: chr1:25549795-25550197 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 242

Conread position: 5-413
Cow position: chr1:33550655-33551062 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 180

Conread position: 5-415
Cow position: chr1:69402724-69403134 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 202

Conread position: 5-420
Cow position: chr1:56194199-56193781 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 150

Conread position: 5-420
Cow position: chr1:63606051-63605631 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 203

Conread position: 5-421
Cow position: chr1:18244657-18244233 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 241

Conread position: 5-421
Cow position: chr1:22000225-21999806 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 203

Conread position: 5-421
Cow position: chr1:87244531-87244962 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 104

Conread position: 5-422
Cow position: chr1:8824794-8825203 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 195

Conread position: 5-422
Cow position: chr1:25180299-25179878 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 24

Conread position: 5-422
Cow position: chr1:28872809-28873226 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 202

Conread position: 5-422
Cow position: chr1:42736189-42736605 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 202

Conread position: 5-422
Cow position: chr1:49974456-49974038 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 20

Conread position: 5-422
Cow position: chr1:52233367-52232963 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 34

Conread position: 5-422
Cow position: chr1:57567682-57568103 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 202

Conread position: 5-422
Cow position: chr1:62854095-62853693 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 110

Conread position: 5-422
Cow position: chr1:68607816-68607391 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 202

Conread position: 5-422
Cow position: chr1:72187139-72186720 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 200

Conread position: 5-422
Cow position: chr1:72656715-72657139 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 29

Conread position: 5-422
Cow position: chr1:76545808-76545387 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 199

Conread position: 5-422
Cow position: chr1:76623213-76622805 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 195

Conread position: 5-422
Cow position: chr1:79336072-79335652 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 201

Conread position: 5-422
Cow position: chr1:79457235-79456820 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 168

Conread position: 5-422
Cow position: chr1:88130490-88130923 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 198

Conread position: 5-422
Cow position: chr1:88635110-88635524 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 29

Conread position: 5-422
Cow position: chr1:89899969-89899551 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 64

Conread position: 5-422
Cow position: chr1:93854252-93854673 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 202

Conread position: 5-422
Cow position: chr1:100597650-100597221 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 202

Conread position: 5-422
Cow position: chr1:101858248-101857833 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 77

Conread position: 6-422
Cow position: chr1:87207679-87207275 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 104

Conread position: 8-422
Cow position: chr1:76752915-76752501 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 196

Conread position: 8-422
Cow position: chr1:89740509-89740111 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 220

Conread position: 9-355
Cow position: chr1:102548971-102549311 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 16

Conread position: 9-370
Cow position: chr1:62806070-62805707 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 194

Conread position: 9-422
Cow position: chr1:86699482-86699065 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 129

Conread position: 9-422
Cow position: chr1:102435292-102434886 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 195

Conread position: 22-422
Cow position: chr1:40307816-40308215 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 302

Conread position: 29-269
Cow position: chr1:85881497-85881741 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 175
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 18

Conread position: 62-422
Cow position: chr1:72080561-72080931 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 185

Conread position: 71-315
Cow position: chr1:21541359-21541600 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 170
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 37, 21

Conread position: 102-301
Cow position: chr1:79885000-79884800 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 22, 144

Conread position: 102-420
Cow position: chr1:99910783-99911109 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 142

Conread position: 103-422
Cow position: chr1:11863403-11863092 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 75

Conread position: 103-422
Cow position: chr1:23050673-23050989 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 219
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 238, 116

Conread position: 109-422
Cow position: chr1:12062355-12062044 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 18

Conread position: 128-422
Cow position: chr1:48245669-48245964 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 76

Show alignments to all cow chromosomes.